AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene060060

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060060.t1 MTR_3g101030 80.706 425 65 3 39 446 5 429 0.0 678
MS.gene060060.t1 MTR_3g101050 72.991 448 67 7 1 445 1 397 0.0 607
MS.gene060060.t1 MTR_3g101010 80.679 383 70 2 66 446 9 389 0.0 598
MS.gene060060.t1 MTR_8g027395 67.000 400 121 4 49 446 7 397 0.0 524
MS.gene060060.t1 MTR_3g018740 69.974 383 108 3 65 444 8 386 0.0 521
MS.gene060060.t1 MTR_4g045707 67.347 392 120 5 57 446 3 388 1.54e-179 507
MS.gene060060.t1 MTR_8g461160 65.816 392 130 2 57 444 1 392 1.18e-177 502
MS.gene060060.t1 MTR_8g027420 66.494 385 110 5 64 446 8 375 5.57e-175 494
MS.gene060060.t1 MTR_3g101180 64.573 398 129 4 57 444 3 398 4.04e-173 491
MS.gene060060.t1 MTR_3g048000 63.402 388 117 5 60 444 25 390 1.02e-168 479
MS.gene060060.t1 MTR_4g088525 65.940 367 117 3 81 445 8 368 4.34e-167 474
MS.gene060060.t1 MTR_7g451890 62.078 385 142 2 66 446 18 402 5.68e-167 475
MS.gene060060.t1 MTR_4g088535 65.026 386 109 6 58 441 5 366 3.11e-165 470
MS.gene060060.t1 MTR_7g050810 61.697 389 137 3 66 446 20 404 2.39e-164 469
MS.gene060060.t1 MTR_2g046030 63.896 385 126 5 66 444 9 386 3.20e-164 468
MS.gene060060.t1 MTR_7g047780 62.338 385 141 2 66 446 18 402 5.00e-164 468
MS.gene060060.t1 MTR_2g045980 63.896 385 126 5 66 444 9 386 1.02e-163 467
MS.gene060060.t1 MTR_7g050750 61.299 385 145 2 66 446 12 396 7.97e-162 462
MS.gene060060.t1 MTR_3g101130 60.622 386 148 3 62 446 7 389 2.11e-160 458
MS.gene060060.t1 MTR_3g015620 60.938 384 120 6 66 444 20 378 2.72e-150 432
MS.gene060060.t1 MTR_3g102920 58.575 379 117 4 70 444 66 408 1.64e-139 406
MS.gene060060.t1 MTR_3g100995 75.294 255 62 1 192 446 11 264 5.69e-139 399
MS.gene060060.t1 MTR_3g101200 55.556 369 139 4 78 444 45 390 6.96e-127 373
MS.gene060060.t1 MTR_3g101190 54.076 368 102 4 83 446 8 312 2.96e-124 363
MS.gene060060.t1 MTR_3g018747 68.846 260 63 3 188 444 9 253 5.39e-121 353
MS.gene060060.t1 MTR_3g100010 58.075 322 87 2 85 373 38 344 2.78e-116 344
MS.gene060060.t1 MTR_7g050830 55.340 309 107 2 68 356 22 319 1.80e-111 331
MS.gene060060.t1 MTR_3g015760 58.423 279 102 4 173 444 8 279 1.08e-98 297
MS.gene060060.t1 MTR_3g111160 68.571 210 61 2 240 446 13 220 1.63e-90 274
MS.gene060060.t1 MTR_3g100520 60.811 222 70 3 229 446 1 209 2.70e-86 263
MS.gene060060.t1 MTR_3g101110 60.251 239 63 4 188 420 68 280 4.33e-86 265
MS.gene060060.t1 MTR_3g114310 42.250 400 204 12 64 446 21 410 2.20e-85 268
MS.gene060060.t1 MTR_3g099970 66.667 195 48 2 188 381 20 198 8.84e-84 256
MS.gene060060.t1 MTR_2g046410 64.532 203 64 3 248 444 147 347 1.38e-79 250
MS.gene060060.t1 MTR_3g101020 66.486 185 37 2 262 446 1 160 2.94e-76 235
MS.gene060060.t1 MTR_3g111150 58.757 177 47 2 66 242 3 153 6.20e-62 198
MS.gene060060.t1 MTR_3g101150 62.420 157 53 2 294 444 1 157 1.26e-59 192
MS.gene060060.t1 MTR_3g102870 57.764 161 66 1 251 409 1 161 1.09e-56 185
MS.gene060060.t1 MTR_3g100990 58.784 148 58 2 66 213 9 153 2.19e-44 162
MS.gene060060.t1 MTR_4g093550 63.415 82 28 1 66 147 10 89 1.65e-24 97.4
MS.gene060060.t1 MTR_6g046890 64.474 76 24 1 80 155 15 87 5.80e-20 86.3
MS.gene060060.t1 MTR_3g101140 61.538 65 24 1 383 446 52 116 2.45e-16 75.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene060060.t1 AT1G47710 51.852 405 186 5 44 444 18 417 9.36e-143 414
MS.gene060060.t1 AT1G47710 52.551 392 178 4 57 444 3 390 2.16e-142 412
MS.gene060060.t1 AT3G45220 48.072 389 184 6 66 443 9 390 5.92e-120 355
MS.gene060060.t1 AT2G25240 47.656 384 185 7 66 443 9 382 6.55e-115 342
MS.gene060060.t1 AT2G26390 46.770 387 188 6 66 443 9 386 5.24e-113 338
MS.gene060060.t1 AT1G62170 42.779 367 183 4 85 445 88 433 5.13e-96 296
MS.gene060060.t1 AT2G14540 44.792 384 183 6 66 443 37 397 7.87e-95 291
MS.gene060060.t1 AT1G64030 42.708 384 193 7 66 443 9 371 7.10e-92 283
MS.gene060060.t1 AT2G35580 41.823 373 188 8 81 443 18 371 4.57e-89 276
MS.gene060060.t1 AT1G62170 39.250 400 183 5 85 445 88 466 4.75e-89 279
MS.gene060060.t1 AT1G64010 46.759 216 93 4 229 443 1 195 1.12e-59 194
MS.gene060060.t1 AT1G64010 46.766 201 85 4 244 443 2 181 1.18e-53 177
MS.gene060060.t1 AT1G62160 40.110 182 86 4 266 445 60 220 9.74e-35 129
MS.gene060060.t1 AT1G63280 52.174 115 51 2 188 300 8 120 4.69e-32 119
MS.gene060060.t1 AT1G51330 49.550 111 53 2 187 294 30 140 5.52e-24 99.4
MS.gene060060.t1 AT1G64020 32.432 111 72 3 70 179 13 121 2.13e-12 64.3

Find 102 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTAATGCGCTGTACTTTAA+AGG 0.166787 7.2:-69023997 MS.gene060060:CDS
TGACCAATGAAGTGAATTTA+TGG 0.210594 7.2:-69024098 MS.gene060060:CDS
TTATCTTCACCTTGCTTATA+AGG 0.268250 7.2:+69023829 None:intergenic
CTTGTCTTGATAAGATTCTT+TGG 0.269178 7.2:+69024578 None:intergenic
CAATGGAGGTCTTACTAAAA+TGG 0.273021 7.2:-69023593 MS.gene060060:CDS
ATCGATTTGGATATTGCTTA+TGG 0.285955 7.2:+69024701 None:intergenic
CCAAAGTTCAATATTTCATT+TGG 0.296966 7.2:-69023667 MS.gene060060:CDS
CAGGTGCTCAATCCTCTTGC+TGG 0.306550 7.2:-69023358 MS.gene060060:CDS
GTTGAGTTGATCGGTGGATT+TGG 0.319346 7.2:+69024455 None:intergenic
CAAATGAAATATTGAACTTT+GGG 0.323605 7.2:+69023668 None:intergenic
GCCAACTTTGCTTGAGAAGC+TGG 0.324647 7.2:-69023758 MS.gene060060:CDS
ACTGAAACAATCATCTTTGT+TGG 0.329190 7.2:-69023382 MS.gene060060:CDS
GGCTTCCGAATCTGAGTTAC+TGG 0.338294 7.2:-69023737 MS.gene060060:CDS
AGCCCATAAATTCACTTCAT+TGG 0.342189 7.2:+69024095 None:intergenic
TATCTTTCGTCGATGGTGTA+TGG 0.345495 7.2:-69024368 MS.gene060060:CDS
AAGTGGAAGTAGGTGACTTT+AGG 0.367192 7.2:-69023693 MS.gene060060:CDS
TTCCTTCCAAATGCAAAAGA+TGG 0.367541 7.2:-69023784 MS.gene060060:CDS
CCAAATGAAATATTGAACTT+TGG 0.376715 7.2:+69023667 None:intergenic
TTCTTTGGAGAAAAGATGTT+TGG 0.376879 7.2:+69024593 None:intergenic
TGCGGTGGCTGCAACAGCTT+CGG 0.384988 7.2:+69023498 None:intergenic
ATTCAAAAGGTGAAAATCAT+AGG 0.391490 7.2:+69023936 None:intergenic
GAAAGAAGGTTGAAGAGAAA+GGG 0.417612 7.2:+69024335 None:intergenic
TGAAAGAAGGTTGAAGAGAA+AGG 0.419511 7.2:+69024334 None:intergenic
ATCTTATCAAGACAAGAATA+TGG 0.421750 7.2:-69024571 MS.gene060060:CDS
GACACAATTCCTTTGAAAGA+AGG 0.426001 7.2:+69024321 None:intergenic
ATTAAAGAACTTCTTCCTCT+AGG 0.427888 7.2:-69024051 MS.gene060060:CDS
TTTGAATGGAAACTCAGTTA+AGG 0.440673 7.2:-69023920 MS.gene060060:CDS
TAACTGAGTTTCCATTCAAA+AGG 0.441115 7.2:+69023923 None:intergenic
AACAATCATCTTTGTTGGAC+AGG 0.442686 7.2:-69023377 MS.gene060060:CDS
TCTCTAATCATAAACAAGAA+AGG 0.443816 7.2:+69023412 None:intergenic
TTAAAGAACTTCTTCCTCTA+GGG 0.444956 7.2:-69024050 MS.gene060060:CDS
CAAGCTTCCTCTTGATAAAG+TGG 0.447424 7.2:-69023710 MS.gene060060:CDS
GATGTTGAGTGGGATCGATT+TGG 0.447564 7.2:+69024688 None:intergenic
TTTATTGACGTAAATGAAGA+AGG 0.449783 7.2:-69023523 MS.gene060060:CDS
CTCTAATCATAAACAAGAAA+GGG 0.468439 7.2:+69023413 None:intergenic
ATCATCGCTGCTGGCTCCGA+GGG 0.472440 7.2:-69024513 MS.gene060060:CDS
TCTCTTCAACCTTCTTTCAA+AGG 0.474212 7.2:-69024330 MS.gene060060:CDS
GTGTTCCAGTAACTCAGATT+CGG 0.474362 7.2:+69023732 None:intergenic
TCCTTCCAAATGCAAAAGAT+GGG 0.485174 7.2:-69023783 MS.gene060060:CDS
GCCAGCTTCTCAAGCAAAGT+TGG 0.489801 7.2:+69023757 None:intergenic
ATCTTTCGTCGATGGTGTAT+GGG 0.491547 7.2:-69024367 MS.gene060060:CDS
GATAGATGAGGCCCGCCTGC+GGG 0.493469 7.2:+69024387 None:intergenic
GTGCTAAGCATCATCGCTGC+TGG 0.494658 7.2:-69024522 MS.gene060060:CDS
TTGAGAAGTTGTTGTTGTGT+GGG 0.494908 7.2:+69024489 None:intergenic
GACCAATGAAGTGAATTTAT+GGG 0.495263 7.2:-69024097 MS.gene060060:CDS
GTTGATCGGTGGATTTGGAT+TGG 0.496620 7.2:+69024460 None:intergenic
CTTCACCTTGCTTATAAGGA+AGG 0.497179 7.2:+69023833 None:intergenic
ATATTGCTTATGGTTCTCTT+CGG 0.500550 7.2:+69024711 None:intergenic
AGGTGCTCAATCCTCTTGCT+GGG 0.503743 7.2:-69023357 MS.gene060060:CDS
TTGTTGTTGTGTGGGGCCCT+CGG 0.506763 7.2:+69024497 None:intergenic
GTTGAGAAGTTGTTGTTGTG+TGG 0.516014 7.2:+69024488 None:intergenic
GCTATGGTTGTTTGCGAGGG+AGG 0.521590 7.2:+69024635 None:intergenic
TGCAGTCACTAGCAGTGGCA+TGG 0.521843 7.2:-69023470 MS.gene060060:CDS
GCTACAAAGTCTAGTCGAGT+TGG 0.522053 7.2:+69023442 None:intergenic
AAAGATGTTTGGCGATGGTG+AGG 0.524270 7.2:+69024604 None:intergenic
AGCACAACTTGTAGTGAAAG+TGG 0.525473 7.2:+69024540 None:intergenic
GCAGTCACTAGCAGTGGCAT+GGG 0.532869 7.2:-69023469 MS.gene060060:CDS
CTTGGCCTTCCTTATAAGCA+AGG 0.532934 7.2:-69023838 MS.gene060060:CDS
CATCATCGCTGCTGGCTCCG+AGG 0.533411 7.2:-69024514 MS.gene060060:CDS
CGCTGTACTTTAAAGGAGAG+TGG 0.534492 7.2:-69023990 MS.gene060060:CDS
GATCGGTGGATTTGGATTGG+AGG 0.535140 7.2:+69024463 None:intergenic
AATGACGGAGACGAGGATAG+AGG 0.536198 7.2:+69024425 None:intergenic
GGAGACGAGGATAGAGGCGA+AGG 0.536431 7.2:+69024431 None:intergenic
TCTGATATGCTGAAGGAGCT+AGG 0.542423 7.2:-69023634 MS.gene060060:CDS
GAAGAAGCAGAGAACAACTT+TGG 0.549721 7.2:+69024785 None:intergenic
AAAACGGTGCTCCCGCAGGC+GGG 0.550168 7.2:-69024398 MS.gene060060:CDS
CTACAAAACGGTGCTCCCGC+AGG 0.550410 7.2:-69024402 MS.gene060060:CDS
CGTTGCTATGGTTGTTTGCG+AGG 0.559095 7.2:+69024631 None:intergenic
CCTACTTCCACTTTATCAAG+AGG 0.564451 7.2:+69023703 None:intergenic
GAGAAGCTGTTGATGTTGAG+TGG 0.565808 7.2:+69024677 None:intergenic
CCTCATCTATCTTTCGTCGA+TGG 0.565945 7.2:-69024375 MS.gene060060:CDS
CCTCTTGATAAAGTGGAAGT+AGG 0.566916 7.2:-69023703 MS.gene060060:CDS
TTCTGTCGATTTCAAGAACA+AGG 0.572001 7.2:-69024274 MS.gene060060:intron
GTCTCCGTCATTCTACAAAA+CGG 0.572969 7.2:-69024414 MS.gene060060:CDS
GTTGCTATGGTTGTTTGCGA+GGG 0.577691 7.2:+69024632 None:intergenic
TGAGAAGTTGTTGTTGTGTG+GGG 0.577961 7.2:+69024490 None:intergenic
GTAAGACCTCCATTGGTGAA+AGG 0.579413 7.2:+69023601 None:intergenic
CACTAAAATCACCCAGCAAG+AGG 0.587700 7.2:+69023346 None:intergenic
CAAAACGGTGCTCCCGCAGG+CGG 0.589050 7.2:-69024399 MS.gene060060:CDS
TTTGTAGAATGACGGAGACG+AGG 0.590002 7.2:+69024418 None:intergenic
AAGATGTTTGGCGATGGTGA+GGG 0.596429 7.2:+69024605 None:intergenic
GCAGAGAACAACTTTGGCGA+TGG 0.601250 7.2:+69024791 None:intergenic
GGCGAAGGAGTTGAGTTGAT+CGG 0.602516 7.2:+69024446 None:intergenic
TGAAACTTCTGATATGCTGA+AGG 0.602682 7.2:-69023641 MS.gene060060:CDS
AGATAGATGAGGCCCGCCTG+CGG 0.604970 7.2:+69024386 None:intergenic
TGGTGAGGGAAACGTTGCTA+TGG 0.613033 7.2:+69024619 None:intergenic
AGAACTTCTTCCTCTAGGGT+CGG 0.613652 7.2:-69024046 MS.gene060060:CDS
TTGCGAGGGAGGATTCTGAT+CGG 0.616661 7.2:+69024646 None:intergenic
CTTCTTCGTGCTCAACATCG+TGG 0.619017 7.2:-69024769 MS.gene060060:CDS
AGAAGCTGTTGATGTTGAGT+GGG 0.619685 7.2:+69024678 None:intergenic
TTTCGTCGATGGTGTATGGG+TGG 0.629419 7.2:-69024364 MS.gene060060:CDS
TGGGCTGAAAGAGAGACAAA+CGG 0.636800 7.2:-69024078 MS.gene060060:CDS
CGAGGGAGGATTCTGATCGG+AGG 0.645667 7.2:+69024649 None:intergenic
AGTGACTGCATCAGATGCGG+TGG 0.649976 7.2:+69023483 None:intergenic
TCTGATGCAGTCACTAGCAG+TGG 0.651539 7.2:-69023475 MS.gene060060:CDS
GGAGAAAAGATGTTTGGCGA+TGG 0.656877 7.2:+69024599 None:intergenic
GGTCGGTCGACAACTTAACT+CGG 0.659941 7.2:-69024029 MS.gene060060:CDS
GAAGGAGTTGAGTTGATCGG+TGG 0.668064 7.2:+69024449 None:intergenic
GCTAGTGACTGCATCAGATG+CGG 0.677841 7.2:+69023480 None:intergenic
TATGCTGAAGGAGCTAGGCG+TGG 0.693931 7.2:-69023629 MS.gene060060:CDS
CCATCGACGAAAGATAGATG+AGG 0.714591 7.2:+69024375 None:intergenic
AAGTTGTCGACCGACCCTAG+AGG 0.749625 7.2:+69024036 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTGATTTTAAATTTTGATA+TGG - chr7.2:69024031-69024050 MS.gene060060:CDS 10.0%
!! TACAAAAATTTAACAAAATC+AGG + chr7.2:69023970-69023989 None:intergenic 15.0%
!! CAAATGAAATATTGAACTTT+GGG + chr7.2:69024505-69024524 None:intergenic 20.0%
!!! AAATTTTGATATGGTTTGAA+AGG - chr7.2:69024040-69024059 MS.gene060060:CDS 20.0%
! ATCTTATCAAGACAAGAATA+TGG - chr7.2:69023599-69023618 MS.gene060060:CDS 25.0%
! ATTCAAAAGGTGAAAATCAT+AGG + chr7.2:69024237-69024256 None:intergenic 25.0%
! CCAAAGTTCAATATTTCATT+TGG - chr7.2:69024503-69024522 MS.gene060060:CDS 25.0%
! CCAAATGAAATATTGAACTT+TGG + chr7.2:69024506-69024525 None:intergenic 25.0%
! CTCTAATCATAAACAAGAAA+GGG + chr7.2:69024760-69024779 None:intergenic 25.0%
! TCTCTAATCATAAACAAGAA+AGG + chr7.2:69024761-69024780 None:intergenic 25.0%
! TTTATTGACGTAAATGAAGA+AGG - chr7.2:69024647-69024666 MS.gene060060:CDS 25.0%
!! AAGTATTTTGTAGTGAAAAG+AGG + chr7.2:69023939-69023958 None:intergenic 25.0%
!! AGTATTTTGTAGTGAAAAGA+GGG + chr7.2:69023938-69023957 None:intergenic 25.0%
!! TATGATTTTCACCTTTTGAA+TGG - chr7.2:69024236-69024255 MS.gene060060:intron 25.0%
!!! GAATGATAATTTTGATGCTT+CGG - chr7.2:69024202-69024221 MS.gene060060:intron 25.0%
!!! GAATGATTTTAGAAATGCAT+AGG + chr7.2:69024619-69024638 None:intergenic 25.0%
!!! TTCGATGATTTTAAAGTTCT+TGG - chr7.2:69024314-69024333 MS.gene060060:CDS 25.0%
ACTGAAACAATCATCTTTGT+TGG - chr7.2:69024788-69024807 MS.gene060060:CDS 30.0%
ATATTGCTTATGGTTCTCTT+CGG + chr7.2:69023462-69023481 None:intergenic 30.0%
ATTAAAGAACTTCTTCCTCT+AGG - chr7.2:69024119-69024138 MS.gene060060:intron 30.0%
CTTGTCTTGATAAGATTCTT+TGG + chr7.2:69023595-69023614 None:intergenic 30.0%
GACCAATGAAGTGAATTTAT+GGG - chr7.2:69024073-69024092 MS.gene060060:CDS 30.0%
TAACTGAGTTTCCATTCAAA+AGG + chr7.2:69024250-69024269 None:intergenic 30.0%
TGACCAATGAAGTGAATTTA+TGG - chr7.2:69024072-69024091 MS.gene060060:CDS 30.0%
TTAAAGAACTTCTTCCTCTA+GGG - chr7.2:69024120-69024139 MS.gene060060:intron 30.0%
TTATCTTCACCTTGCTTATA+AGG + chr7.2:69024344-69024363 None:intergenic 30.0%
TTTGAATGGAAACTCAGTTA+AGG - chr7.2:69024250-69024269 MS.gene060060:intron 30.0%
! GAAAAATGACTTTTGGATCA+AGG + chr7.2:69023440-69023459 None:intergenic 30.0%
! GTATTTTGTAGTGAAAAGAG+GGG + chr7.2:69023937-69023956 None:intergenic 30.0%
! TTCTTTGGAGAAAAGATGTT+TGG + chr7.2:69023580-69023599 None:intergenic 30.0%
!! ATCGATTTGGATATTGCTTA+TGG + chr7.2:69023472-69023491 None:intergenic 30.0%
AACAATCATCTTTGTTGGAC+AGG - chr7.2:69024793-69024812 MS.gene060060:CDS 35.0%
AGCCCATAAATTCACTTCAT+TGG + chr7.2:69024078-69024097 None:intergenic 35.0%
CAATGGAGGTCTTACTAAAA+TGG - chr7.2:69024577-69024596 MS.gene060060:CDS 35.0%
GAAAGAAGGTTGAAGAGAAA+GGG + chr7.2:69023838-69023857 None:intergenic 35.0%
TCCTTCCAAATGCAAAAGAT+GGG - chr7.2:69024387-69024406 MS.gene060060:CDS 35.0%
TCTCTTCAACCTTCTTTCAA+AGG - chr7.2:69023840-69023859 MS.gene060060:CDS 35.0%
TGAAACTTCTGATATGCTGA+AGG - chr7.2:69024529-69024548 MS.gene060060:CDS 35.0%
TGAAAGAAGGTTGAAGAGAA+AGG + chr7.2:69023839-69023858 None:intergenic 35.0%
TTCCTTCCAAATGCAAAAGA+TGG - chr7.2:69024386-69024405 MS.gene060060:CDS 35.0%
! CTCTTCGGAAAAATGACTTT+TGG + chr7.2:69023447-69023466 None:intergenic 35.0%
! GACACAATTCCTTTGAAAGA+AGG + chr7.2:69023852-69023871 None:intergenic 35.0%
! TTGAGAAGTTGTTGTTGTGT+GGG + chr7.2:69023684-69023703 None:intergenic 35.0%
!! CATTTTAGTAAGACCTCCAT+TGG + chr7.2:69024579-69024598 None:intergenic 35.0%
!! TTCTGTCGATTTCAAGAACA+AGG - chr7.2:69023896-69023915 MS.gene060060:CDS 35.0%
AAGTGGAAGTAGGTGACTTT+AGG - chr7.2:69024477-69024496 MS.gene060060:CDS 40.0%
AGAAGCTGTTGATGTTGAGT+GGG + chr7.2:69023495-69023514 None:intergenic 40.0%
AGCACAACTTGTAGTGAAAG+TGG + chr7.2:69023633-69023652 None:intergenic 40.0%
ATCTTTCGTCGATGGTGTAT+GGG - chr7.2:69023803-69023822 MS.gene060060:CDS 40.0%
CAAGCTTCCTCTTGATAAAG+TGG - chr7.2:69024460-69024479 MS.gene060060:CDS 40.0%
CCTACTTCCACTTTATCAAG+AGG + chr7.2:69024470-69024489 None:intergenic 40.0%
CCTCTTGATAAAGTGGAAGT+AGG - chr7.2:69024467-69024486 MS.gene060060:CDS 40.0%
CTTCACCTTGCTTATAAGGA+AGG + chr7.2:69024340-69024359 None:intergenic 40.0%
GAAGAAGCAGAGAACAACTT+TGG + chr7.2:69023388-69023407 None:intergenic 40.0%
GCTAATGCGCTGTACTTTAA+AGG - chr7.2:69024173-69024192 MS.gene060060:intron 40.0%
GTCTCCGTCATTCTACAAAA+CGG - chr7.2:69023756-69023775 MS.gene060060:CDS 40.0%
GTGTTCCAGTAACTCAGATT+CGG + chr7.2:69024441-69024460 None:intergenic 40.0%
TATCTTTCGTCGATGGTGTA+TGG - chr7.2:69023802-69023821 MS.gene060060:CDS 40.0%
! AGCACCGTTTTGTAGAATGA+CGG + chr7.2:69023763-69023782 None:intergenic 40.0%
! GTTGAGAAGTTGTTGTTGTG+TGG + chr7.2:69023685-69023704 None:intergenic 40.0%
! GTTTTACCTTTCACCAATGG+AGG - chr7.2:69024563-69024582 MS.gene060060:CDS 40.0%
! TGAGAAGTTGTTGTTGTGTG+GGG + chr7.2:69023683-69023702 None:intergenic 40.0%
!! GTGGTTTTACCTTTCACCAA+TGG - chr7.2:69024560-69024579 MS.gene060060:CDS 40.0%
AAAGATGTTTGGCGATGGTG+AGG + chr7.2:69023569-69023588 None:intergenic 45.0%
AAGATGTTTGGCGATGGTGA+GGG + chr7.2:69023568-69023587 None:intergenic 45.0%
CCATCGACGAAAGATAGATG+AGG + chr7.2:69023798-69023817 None:intergenic 45.0%
CCTCATCTATCTTTCGTCGA+TGG - chr7.2:69023795-69023814 MS.gene060060:CDS 45.0%
GAGAAGCTGTTGATGTTGAG+TGG + chr7.2:69023496-69023515 None:intergenic 45.0%
GATGTTGAGTGGGATCGATT+TGG + chr7.2:69023485-69023504 None:intergenic 45.0%
GCTACAAAGTCTAGTCGAGT+TGG + chr7.2:69024731-69024750 None:intergenic 45.0%
GGAGAAAAGATGTTTGGCGA+TGG + chr7.2:69023574-69023593 None:intergenic 45.0%
GTAAGACCTCCATTGGTGAA+AGG + chr7.2:69024572-69024591 None:intergenic 45.0%
GTTGCTATGGTTGTTTGCGA+GGG + chr7.2:69023541-69023560 None:intergenic 45.0%
TCTGATATGCTGAAGGAGCT+AGG - chr7.2:69024536-69024555 MS.gene060060:CDS 45.0%
TGGGCTGAAAGAGAGACAAA+CGG - chr7.2:69024092-69024111 MS.gene060060:CDS 45.0%
! CGCTGTACTTTAAAGGAGAG+TGG - chr7.2:69024180-69024199 MS.gene060060:intron 45.0%
! CTTGGCCTTCCTTATAAGCA+AGG - chr7.2:69024332-69024351 MS.gene060060:CDS 45.0%
! GCCCATCTTTTGCATTTGGA+AGG + chr7.2:69024391-69024410 None:intergenic 45.0%
! GTTGATCGGTGGATTTGGAT+TGG + chr7.2:69023713-69023732 None:intergenic 45.0%
! TTTGTAGAATGACGGAGACG+AGG + chr7.2:69023755-69023774 None:intergenic 45.0%
!! AGAACTTCTTCCTCTAGGGT+CGG - chr7.2:69024124-69024143 MS.gene060060:intron 45.0%
!! GTTGAGTTGATCGGTGGATT+TGG + chr7.2:69023718-69023737 None:intergenic 45.0%
AGGTGCTCAATCCTCTTGCT+GGG - chr7.2:69024813-69024832 MS.gene060060:CDS 50.0%
CGTTGCTATGGTTGTTTGCG+AGG + chr7.2:69023542-69023561 None:intergenic 50.0%
CTTCTTCGTGCTCAACATCG+TGG - chr7.2:69023401-69023420 MS.gene060060:CDS 50.0%
GCAGAGAACAACTTTGGCGA+TGG + chr7.2:69023382-69023401 None:intergenic 50.0%
GCCAACTTTGCTTGAGAAGC+TGG - chr7.2:69024412-69024431 MS.gene060060:CDS 50.0%
GCCAGCTTCTCAAGCAAAGT+TGG + chr7.2:69024416-69024435 None:intergenic 50.0%
GCTAGTGACTGCATCAGATG+CGG + chr7.2:69024693-69024712 None:intergenic 50.0%
GGCTTCCGAATCTGAGTTAC+TGG - chr7.2:69024433-69024452 MS.gene060060:CDS 50.0%
GGTCGGTCGACAACTTAACT+CGG - chr7.2:69024141-69024160 MS.gene060060:intron 50.0%
TCTGATGCAGTCACTAGCAG+TGG - chr7.2:69024695-69024714 MS.gene060060:CDS 50.0%
TGGTGAGGGAAACGTTGCTA+TGG + chr7.2:69023554-69023573 None:intergenic 50.0%
TTGCGAGGGAGGATTCTGAT+CGG + chr7.2:69023527-69023546 None:intergenic 50.0%
TTTCGTCGATGGTGTATGGG+TGG - chr7.2:69023806-69023825 MS.gene060060:CDS 50.0%
! AATGACGGAGACGAGGATAG+AGG + chr7.2:69023748-69023767 None:intergenic 50.0%
! GATCGGTGGATTTGGATTGG+AGG + chr7.2:69023710-69023729 None:intergenic 50.0%
! GGCAGCCCATCTTTTGCATT+TGG + chr7.2:69024395-69024414 None:intergenic 50.0%
!! GAAGGAGTTGAGTTGATCGG+TGG + chr7.2:69023724-69023743 None:intergenic 50.0%
!! GGCGAAGGAGTTGAGTTGAT+CGG + chr7.2:69023727-69023746 None:intergenic 50.0%
AAGTTGTCGACCGACCCTAG+AGG + chr7.2:69024137-69024156 None:intergenic 55.0%
AGTGACTGCATCAGATGCGG+TGG + chr7.2:69024690-69024709 None:intergenic 55.0%
CAGGTGCTCAATCCTCTTGC+TGG - chr7.2:69024812-69024831 MS.gene060060:CDS 55.0%
GCAGTCACTAGCAGTGGCAT+GGG - chr7.2:69024701-69024720 MS.gene060060:CDS 55.0%
GCTATGGTTGTTTGCGAGGG+AGG + chr7.2:69023538-69023557 None:intergenic 55.0%
GTGCTAAGCATCATCGCTGC+TGG - chr7.2:69023648-69023667 MS.gene060060:CDS 55.0%
TATGCTGAAGGAGCTAGGCG+TGG - chr7.2:69024541-69024560 MS.gene060060:CDS 55.0%
TGCAGTCACTAGCAGTGGCA+TGG - chr7.2:69024700-69024719 MS.gene060060:CDS 55.0%
! TTGTTGTTGTGTGGGGCCCT+CGG + chr7.2:69023676-69023695 None:intergenic 55.0%
AGATAGATGAGGCCCGCCTG+CGG + chr7.2:69023787-69023806 None:intergenic 60.0%
CGAGGGAGGATTCTGATCGG+AGG + chr7.2:69023524-69023543 None:intergenic 60.0%
CTACAAAACGGTGCTCCCGC+AGG - chr7.2:69023768-69023787 MS.gene060060:CDS 60.0%
GGAGACGAGGATAGAGGCGA+AGG + chr7.2:69023742-69023761 None:intergenic 60.0%
TGCGGTGGCTGCAACAGCTT+CGG + chr7.2:69024675-69024694 None:intergenic 60.0%
!! ATCATCGCTGCTGGCTCCGA+GGG - chr7.2:69023657-69023676 MS.gene060060:CDS 60.0%
AAAACGGTGCTCCCGCAGGC+GGG - chr7.2:69023772-69023791 MS.gene060060:CDS 65.0%
CAAAACGGTGCTCCCGCAGG+CGG - chr7.2:69023771-69023790 MS.gene060060:CDS 65.0%
GATAGATGAGGCCCGCCTGC+GGG + chr7.2:69023786-69023805 None:intergenic 65.0%
!! CATCATCGCTGCTGGCTCCG+AGG - chr7.2:69023656-69023675 MS.gene060060:CDS 65.0%


Chromosome Type Strat End Strand Name
chr7.2 gene 69023354 69024838 69023354 ID=MS.gene060060
chr7.2 mRNA 69023354 69024838 69023354 ID=MS.gene060060.t1;Parent=MS.gene060060
chr7.2 exon 69024275 69024838 69024275 ID=MS.gene060060.t1.exon1;Parent=MS.gene060060.t1
chr7.2 CDS 69024275 69024838 69024275 ID=cds.MS.gene060060.t1;Parent=MS.gene060060.t1
chr7.2 exon 69023354 69024130 69023354 ID=MS.gene060060.t1.exon2;Parent=MS.gene060060.t1
chr7.2 CDS 69023354 69024130 69023354 ID=cds.MS.gene060060.t1;Parent=MS.gene060060.t1
Gene Sequence

>MS.gene060060

ATGAGGTTCTCTCGCAAAACAATCGCCATCGCCAAAGTTGTTCTCTGCTTCTTCGTGCTCAACATCGTGGCTTGTTTAATCATCCTTGATCCAAAAGTCATTTTTCCGAAGAGAACCATAAGCAATATCCAAATCGATCCCACTCAACATCAACAGCTTCTCGACTTCCTCCGATCAGAATCCTCCCTCGCAAACAACCATAGCAACGTTTCCCTCACCATCGCCAAACATCTTTTCTCCAAAGAATCTTATCAAGACAAGAATATGGTGTTATCTCCACTTTCACTACAAGTTGTGCTAAGCATCATCGCTGCTGGCTCCGAGGGCCCCACACAACAACAACTTCTCAACTTCCTCCAATCCAAATCCACCGATCAACTCAACTCCTTCGCCTCTATCCTCGTCTCCGTCATTCTACAAAACGGTGCTCCCGCAGGCGGGCCTCATCTATCTTTCGTCGATGGTGTATGGGTGGAAAAAACCCTTTCTCTTCAACCTTCTTTCAAAGGAATTGTGTCTAATGATTATAAAGCAAATTTGTCTTCTGTCGATTTCAAGAACAAGGTATGTTTCTATATCTCCCCTCTTTTCACTACAAAATACTTATGCATGTCCTGATTTTGTTAAATTTTTGTATTGCAATACTTGTGAAAAGAACTCAACTATATATTTGCATAATTGATTTTAAATTTTGATATGGTTTGAAAGGCTATTGAAGTGACCAATGAAGTGAATTTATGGGCTGAAAGAGAGACAAACGGTCTTATTAAAGAACTTCTTCCTCTAGGGTCGGTCGACAACTTAACTCGGCTAATATTTGCTAATGCGCTGTACTTTAAAGGAGAGTGGAATGATAATTTTGATGCTTCGGATACGAATGCCTATGATTTTCACCTTTTGAATGGAAACTCAGTTAAGGTTGACTTCATGACTAGTGAGAAGAAGCAGTTTATTAGAGATTTCGATGATTTTAAAGTTCTTGGCCTTCCTTATAAGCAAGGTGAAGATAAGCGTCAATTTACTATGTACTTTTTCCTTCCAAATGCAAAAGATGGGCTGCCAACTTTGCTTGAGAAGCTGGCTTCCGAATCTGAGTTACTGGAACACAAGCTTCCTCTTGATAAAGTGGAAGTAGGTGACTTTAGGATCCCAAAGTTCAATATTTCATTTGGACTTGAAACTTCTGATATGCTGAAGGAGCTAGGCGTGGTTTTACCTTTCACCAATGGAGGTCTTACTAAAATGGTGAACTCTACTCAAAACCTATGCATTTCTAAAATCATTCACAAGTCTTTTATTGACGTAAATGAAGAAGGCACCGAAGCTGTTGCAGCCACCGCATCTGATGCAGTCACTAGCAGTGGCATGGGTTTTCCAACTCGACTAGACTTTGTAGCTGATCACCCTTTCTTGTTTATGATTAGAGAAGAATTGACTGAAACAATCATCTTTGTTGGACAGGTGCTCAATCCTCTTGCTGGGTGA
Protein sequence

>MS.gene060060.t1

MRFSRKTIAIAKVVLCFFVLNIVACLIILDPKVIFPKRTISNIQIDPTQHQQLLDFLRSESSLANNHSNVSLTIAKHLFSKESYQDKNMVLSPLSLQVVLSIIAAGSEGPTQQQLLNFLQSKSTDQLNSFASILVSVILQNGAPAGGPHLSFVDGVWVEKTLSLQPSFKGIVSNDYKANLSSVDFKNKAIEVTNEVNLWAERETNGLIKELLPLGSVDNLTRLIFANALYFKGEWNDNFDASDTNAYDFHLLNGNSVKVDFMTSEKKQFIRDFDDFKVLGLPYKQGEDKRQFTMYFFLPNAKDGLPTLLEKLASESELLEHKLPLDKVEVGDFRIPKFNISFGLETSDMLKELGVVLPFTNGGLTKMVNSTQNLCISKIIHKSFIDVNEEGTEAVAATASDAVTSSGMGFPTRLDFVADHPFLFMIREELTETIIFVGQVLNPLAG