Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57731.t1 | XP_013458165.1 | 95.8 | 286 | 10 | 1 | 1 | 284 | 73 | 358 | 1.10E-162 | 582.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57731.t1 | Q8LA32 | 60.1 | 258 | 94 | 5 | 28 | 284 | 108 | 357 | 4.2e-81 | 302.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57731.t1 | A0A072US66 | 95.8 | 286 | 10 | 1 | 1 | 284 | 73 | 358 | 8.2e-163 | 582.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04932 | MS.gene57731 | 0.805 | 1.65E-49 | -1.69E-46 |
| MS.gene050710 | MS.gene57731 | 0.800048 | 1.73E-48 | -1.69E-46 |
| MS.gene054742 | MS.gene57731 | 0.80871 | 2.71E-50 | -1.69E-46 |
| MS.gene057356 | MS.gene57731 | 0.820709 | 5.94E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57731.t1 | MTR_4g117250 | 95.804 | 286 | 10 | 1 | 1 | 284 | 73 | 358 | 0.0 | 568 |
| MS.gene57731.t1 | MTR_2g022210 | 71.538 | 260 | 68 | 3 | 29 | 283 | 127 | 385 | 1.63e-137 | 393 |
| MS.gene57731.t1 | MTR_1g064680 | 45.775 | 284 | 142 | 6 | 2 | 280 | 67 | 343 | 3.10e-87 | 264 |
| MS.gene57731.t1 | MTR_7g101150 | 49.020 | 255 | 125 | 4 | 29 | 283 | 103 | 352 | 4.05e-85 | 259 |
| MS.gene57731.t1 | MTR_7g101150 | 45.882 | 255 | 109 | 4 | 29 | 283 | 103 | 328 | 1.26e-74 | 231 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57731.t1 | AT5G19080 | 58.647 | 266 | 98 | 5 | 23 | 284 | 119 | 376 | 1.02e-102 | 305 |
| MS.gene57731.t1 | AT3G06140 | 59.843 | 254 | 93 | 5 | 32 | 284 | 112 | 357 | 8.45e-100 | 296 |
| MS.gene57731.t1 | AT3G09770 | 49.035 | 259 | 123 | 4 | 26 | 280 | 117 | 370 | 4.19e-84 | 258 |
| MS.gene57731.t1 | AT5G03200 | 50.198 | 253 | 111 | 5 | 29 | 281 | 100 | 337 | 2.97e-80 | 246 |
| MS.gene57731.t1 | AT3G53410 | 45.769 | 260 | 131 | 6 | 26 | 284 | 48 | 298 | 8.32e-75 | 231 |
| MS.gene57731.t1 | AT3G09770 | 45.815 | 227 | 114 | 4 | 26 | 248 | 117 | 338 | 1.18e-63 | 204 |
Find 79 sgRNAs with CRISPR-Local
Find 118 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTTCTGGCCAATTCCTTTC+TGG | 0.102959 | 8.3:-8970067 | None:intergenic |
| CTGATGGCTGACAAAATTTC+TGG | 0.178200 | 8.3:-8970082 | None:intergenic |
| GCAAATAACTCAAGCTGTTT+TGG | 0.219800 | 8.3:+8970259 | MS.gene57731:CDS |
| TGACTTAGGTTTCTTTGATT+TGG | 0.233161 | 8.3:+8970115 | MS.gene57731:CDS |
| TTACCTTCTTTGCAGTTTCA+TGG | 0.243842 | 8.3:-8969132 | None:intergenic |
| CAATTGGTTGGCGGCATATA+GGG | 0.281867 | 8.3:-8970648 | None:intergenic |
| ATCTCTATCAGTTGCTCAAT+TGG | 0.285101 | 8.3:-8970664 | None:intergenic |
| CATATTACACACTCCTTTCC+AGG | 0.293169 | 8.3:-8970416 | None:intergenic |
| CGAGTGTGCAAAAGCTTTGC+GGG | 0.313846 | 8.3:+8970609 | MS.gene57731:CDS |
| TCAATTGGTTGGCGGCATAT+AGG | 0.323799 | 8.3:-8970649 | None:intergenic |
| CAGTGACACTGGTCCTTTCC+AGG | 0.340830 | 8.3:+8970289 | MS.gene57731:CDS |
| GGCCAATTCCTTTCTGGAAT+GGG | 0.342924 | 8.3:-8970061 | None:intergenic |
| TATGAGTTGAGAGAGTTATA+TGG | 0.348028 | 8.3:+8970353 | MS.gene57731:CDS |
| TTGAGAGAGTTATATGGAAT+TGG | 0.359843 | 8.3:+8970359 | MS.gene57731:CDS |
| TTCCCATTCCAGAAAGGAAT+TGG | 0.365027 | 8.3:+8970059 | MS.gene57731:CDS |
| ACATTGATGTTCTTCTTCTC+TGG | 0.372529 | 8.3:-8969994 | None:intergenic |
| CTTTCCAGGTTAAAGTAGTT+AGG | 0.390941 | 8.3:+8970303 | MS.gene57731:CDS |
| AAGTAGTTAGGCAAATTCTA+TGG | 0.391893 | 8.3:+8970315 | MS.gene57731:CDS |
| GCAGTTTCATGGCCAGTGTA+TGG | 0.399077 | 8.3:-8969121 | None:intergenic |
| AGGGGAAATATGTCTTCTTC+AGG | 0.406792 | 8.3:-8970158 | None:intergenic |
| AAGGAAATCAAGTGGTGATC+AGG | 0.412166 | 8.3:-8969211 | None:intergenic |
| TGGCCAATTCCTTTCTGGAA+TGG | 0.423982 | 8.3:-8970062 | None:intergenic |
| GGTAAGACAGCAGTATCCTT+TGG | 0.432308 | 8.3:-8970449 | None:intergenic |
| CGTGATCGGCTCAAATGCTT+CGG | 0.435126 | 8.3:-8970036 | None:intergenic |
| ATGCGCTGAATCAACGCCTT+TGG | 0.436735 | 8.3:+8970187 | MS.gene57731:CDS |
| CAAGTGGTGATCAGGATTGT+TGG | 0.441902 | 8.3:-8969203 | None:intergenic |
| TCGATGCCCTCTATCCTGGC+AGG | 0.463596 | 8.3:+8969239 | MS.gene57731:CDS |
| AAGTGGTGATCAGGATTGTT+GGG | 0.464409 | 8.3:-8969202 | None:intergenic |
| GATCAGGATTGTTGGGATCC+TGG | 0.468434 | 8.3:-8969195 | None:intergenic |
| GGATCATTACGATCGAAATC+AGG | 0.469121 | 8.3:-8970395 | None:intergenic |
| GTGATCGGCTCAAATGCTTC+GGG | 0.469166 | 8.3:-8970035 | None:intergenic |
| TCAGGAACAGGTATTGACTT+AGG | 0.473795 | 8.3:+8970101 | MS.gene57731:CDS |
| GCGAGTGTGCAAAAGCTTTG+CGG | 0.476383 | 8.3:+8970608 | MS.gene57731:CDS |
| CCAGTGTATGGAGGTGGTGG+TGG | 0.478271 | 8.3:-8969109 | None:intergenic |
| AGACGAACCTGCCAGGATAG+AGG | 0.481223 | 8.3:-8969246 | None:intergenic |
| TCAAATGCTTCGGGATATAG+AGG | 0.488348 | 8.3:-8970026 | None:intergenic |
| CTATCAGTTGCTCAATTGGT+TGG | 0.489453 | 8.3:-8970660 | None:intergenic |
| TTCTGGAATGGGAACGTGAT+CGG | 0.491433 | 8.3:-8970050 | None:intergenic |
| GATTTCGATCGTAATGATCC+TGG | 0.496477 | 8.3:+8970398 | MS.gene57731:CDS |
| GTATTTGTTGTTGCATAGAA+AGG | 0.501927 | 8.3:-8969052 | None:intergenic |
| TGGCCATGAAACTGCAAAGA+AGG | 0.508084 | 8.3:+8969129 | MS.gene57731:CDS |
| CTAACTACTTTAACCTGGAA+AGG | 0.508943 | 8.3:-8970302 | None:intergenic |
| TGGCCAGTGTATGGAGGTGG+TGG | 0.511527 | 8.3:-8969112 | None:intergenic |
| CTTGAGTTATTTGCATGTGA+GGG | 0.517477 | 8.3:-8970250 | None:intergenic |
| CGTTGATAGACGAACCTGCC+AGG | 0.527320 | 8.3:-8969253 | None:intergenic |
| TCAGTTGCTCAATTGGTTGG+CGG | 0.527891 | 8.3:-8970657 | None:intergenic |
| TAGAAAGGGTGGTGAGGCTG+AGG | 0.530145 | 8.3:-8969037 | None:intergenic |
| ATGAAACTGCAAAGAAGGTA+AGG | 0.531866 | 8.3:+8969134 | MS.gene57731:CDS |
| TTTGCCTAACTACTTTAACC+TGG | 0.535215 | 8.3:-8970307 | None:intergenic |
| GTGAGGGGATGCATCTACTA+AGG | 0.540789 | 8.3:-8970234 | None:intergenic |
| AATATGTCTTCTTCAGGTGA+AGG | 0.544420 | 8.3:-8970152 | None:intergenic |
| TGTCTTACCTTGCCGACACA+TGG | 0.547747 | 8.3:+8970463 | MS.gene57731:CDS |
| ACACACTCTGCAGCTTTACC+AGG | 0.548102 | 8.3:+8969177 | MS.gene57731:CDS |
| ATATGTCTTCTTCAGGTGAA+GGG | 0.552252 | 8.3:-8970151 | None:intergenic |
| TTGATTCAGCGCATATTACG+AGG | 0.561322 | 8.3:-8970178 | None:intergenic |
| GCTTGAGTTATTTGCATGTG+AGG | 0.564572 | 8.3:-8970251 | None:intergenic |
| TATTTGTTGTTGCATAGAAA+GGG | 0.567537 | 8.3:-8969051 | None:intergenic |
| GAGAAGAAGAACATCAATGT+AGG | 0.568366 | 8.3:+8969997 | MS.gene57731:CDS |
| TCATGGCCAGTGTATGGAGG+TGG | 0.578139 | 8.3:-8969115 | None:intergenic |
| ATCACGTTCCCATTCCAGAA+AGG | 0.578262 | 8.3:+8970053 | MS.gene57731:CDS |
| GACGAACCTGCCAGGATAGA+GGG | 0.579142 | 8.3:-8969245 | None:intergenic |
| TGAACAACATCTACATCAAG+TGG | 0.588278 | 8.3:-8969079 | None:intergenic |
| CGATCGTAATGATCCTGGAA+AGG | 0.591702 | 8.3:+8970403 | MS.gene57731:CDS |
| GTGGTGAGGCTGAGGCAGCA+TGG | 0.607957 | 8.3:-8969029 | None:intergenic |
| TTGTTGTTGCATAGAAAGGG+TGG | 0.612191 | 8.3:-8969048 | None:intergenic |
| AAGTCAATACCTGTTCCTGA+TGG | 0.616490 | 8.3:-8970098 | None:intergenic |
| AATGATACCATGTGTCGGCA+AGG | 0.619576 | 8.3:-8970470 | None:intergenic |
| GCATCTACTAAGGAACTGAC+AGG | 0.623246 | 8.3:-8970224 | None:intergenic |
| CCACCACCACCTCCATACAC+TGG | 0.639768 | 8.3:+8969109 | MS.gene57731:CDS |
| TTGAGTTATTTGCATGTGAG+GGG | 0.641986 | 8.3:-8970249 | None:intergenic |
| CGAAAACAAAGGAAATCAAG+TGG | 0.643884 | 8.3:-8969219 | None:intergenic |
| GTTTCATGGCCAGTGTATGG+AGG | 0.646913 | 8.3:-8969118 | None:intergenic |
| CTAGTAATGATACCATGTGT+CGG | 0.651467 | 8.3:-8970475 | None:intergenic |
| AATATGCATGACAGAACCAA+AGG | 0.654188 | 8.3:+8970433 | MS.gene57731:CDS |
| TGATTCAGCGCATATTACGA+GGG | 0.654776 | 8.3:-8970177 | None:intergenic |
| GGAGTATCATGATCTTCCAA+AGG | 0.657082 | 8.3:-8970203 | None:intergenic |
| GATTCAGCGCATATTACGAG+GGG | 0.658579 | 8.3:-8970176 | None:intergenic |
| ATAGAGGGCATCGAAAACAA+AGG | 0.673912 | 8.3:-8969230 | None:intergenic |
| GTTGCATAGAAAGGGTGGTG+AGG | 0.707943 | 8.3:-8969043 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TATGTTTATCTTAATTAAAA+GGG | + | chr8.3:8969403-8969422 | MS.gene57731:intron | 10.0% |
| !! | TTATGTTTATCTTAATTAAA+AGG | + | chr8.3:8969402-8969421 | MS.gene57731:intron | 10.0% |
| !! | AAATAATCAAAATAGTGAAG+TGG | - | chr8.3:8970551-8970570 | None:intergenic | 20.0% |
| !! | AATAAATAAAAACGGATGAT+AGG | - | chr8.3:8969560-8969579 | None:intergenic | 20.0% |
| !! | AATAATCAAAATAGTGAAGT+GGG | - | chr8.3:8970550-8970569 | None:intergenic | 20.0% |
| !! | ATCATTCAATTGTTTAATTG+TGG | - | chr8.3:8969703-8969722 | None:intergenic | 20.0% |
| !! | TTAAAACCACAACAATTAAA+TGG | + | chr8.3:8969640-8969659 | MS.gene57731:intron | 20.0% |
| ! | AAACTATTCTTTCATTAGCA+AGG | - | chr8.3:8969622-8969641 | None:intergenic | 25.0% |
| ! | AACTATTCTTTCATTAGCAA+GGG | - | chr8.3:8969621-8969640 | None:intergenic | 25.0% |
| ! | ATCATTACTAGTTGTTTGTT+TGG | + | chr8.3:8970487-8970506 | MS.gene57731:intron | 25.0% |
| ! | TGCTACTACTTTCAATTATT+CGG | + | chr8.3:8969813-8969832 | MS.gene57731:intron | 25.0% |
| ! | TTACTGAATATTCAATTGAC+AGG | - | chr8.3:8969460-8969479 | None:intergenic | 25.0% |
| ! | TTCTGGTCATTACAAATAAA+AGG | - | chr8.3:8969956-8969975 | None:intergenic | 25.0% |
| !!! | GTTTTGTTTCAAATTATGAC+TGG | + | chr8.3:8969835-8969854 | MS.gene57731:intron | 25.0% |
| !!! | TATTTGTTGTTGCATAGAAA+GGG | - | chr8.3:8969054-8969073 | None:intergenic | 25.0% |
| AAGTAGTTAGGCAAATTCTA+TGG | + | chr8.3:8970315-8970334 | MS.gene57731:CDS | 30.0% | |
| ATAACCTAATTACTACGCAA+TGG | - | chr8.3:8969378-8969397 | None:intergenic | 30.0% | |
| GAATATTCAATTGACAGGTA+AGG | - | chr8.3:8969455-8969474 | None:intergenic | 30.0% | |
| GTGTAACCATTTAATTGTTG+TGG | - | chr8.3:8969649-8969668 | None:intergenic | 30.0% | |
| TAAGTAGAAGATCGTAATTC+TGG | - | chr8.3:8969973-8969992 | None:intergenic | 30.0% | |
| TGACTTAGGTTTCTTTGATT+TGG | + | chr8.3:8970115-8970134 | MS.gene57731:CDS | 30.0% | |
| TGCAGTAAGAAAAGTAGAAA+AGG | - | chr8.3:8969279-8969298 | None:intergenic | 30.0% | |
| TTGAGAGAGTTATATGGAAT+TGG | + | chr8.3:8970359-8970378 | MS.gene57731:CDS | 30.0% | |
| ! | AATTGAAGAGCATAAAGAGT+TGG | - | chr8.3:8969515-8969534 | None:intergenic | 30.0% |
| ! | TACTTTTCTTACTGCATGTT+TGG | + | chr8.3:8969283-8969302 | MS.gene57731:intron | 30.0% |
| ! | TATGAGTTGAGAGAGTTATA+TGG | + | chr8.3:8970353-8970372 | MS.gene57731:CDS | 30.0% |
| !! | GTATTTGTTGTTGCATAGAA+AGG | - | chr8.3:8969055-8969074 | None:intergenic | 30.0% |
| AATATGCATGACAGAACCAA+AGG | + | chr8.3:8970433-8970452 | MS.gene57731:CDS | 35.0% | |
| AATATGTCTTCTTCAGGTGA+AGG | - | chr8.3:8970155-8970174 | None:intergenic | 35.0% | |
| AATCAAAATAGTGAAGTGGG+TGG | - | chr8.3:8970547-8970566 | None:intergenic | 35.0% | |
| ACATAGCGTCACATTATTGA+AGG | + | chr8.3:8969748-8969767 | MS.gene57731:intron | 35.0% | |
| ACATTGATGTTCTTCTTCTC+TGG | - | chr8.3:8969997-8970016 | None:intergenic | 35.0% | |
| ATATGTCTTCTTCAGGTGAA+GGG | - | chr8.3:8970154-8970173 | None:intergenic | 35.0% | |
| ATCTCTATCAGTTGCTCAAT+TGG | - | chr8.3:8970667-8970686 | None:intergenic | 35.0% | |
| ATGAAACTGCAAAGAAGGTA+AGG | + | chr8.3:8969134-8969153 | MS.gene57731:CDS | 35.0% | |
| CGAAAACAAAGGAAATCAAG+TGG | - | chr8.3:8969222-8969241 | None:intergenic | 35.0% | |
| CTAACTACTTTAACCTGGAA+AGG | - | chr8.3:8970305-8970324 | None:intergenic | 35.0% | |
| CTAGTAATGATACCATGTGT+CGG | - | chr8.3:8970478-8970497 | None:intergenic | 35.0% | |
| CTTGAGTTATTTGCATGTGA+GGG | - | chr8.3:8970253-8970272 | None:intergenic | 35.0% | |
| CTTTCCAGGTTAAAGTAGTT+AGG | + | chr8.3:8970303-8970322 | MS.gene57731:CDS | 35.0% | |
| GAGAAGAAGAACATCAATGT+AGG | + | chr8.3:8969997-8970016 | MS.gene57731:CDS | 35.0% | |
| TGAACAACATCTACATCAAG+TGG | - | chr8.3:8969082-8969101 | None:intergenic | 35.0% | |
| TTACCTTCTTTGCAGTTTCA+TGG | - | chr8.3:8969135-8969154 | None:intergenic | 35.0% | |
| TTACTGCATGTTTGGTATCA+CGG | + | chr8.3:8969291-8969310 | MS.gene57731:intron | 35.0% | |
| TTCACCATTGCGTAGTAATT+AGG | + | chr8.3:8969371-8969390 | MS.gene57731:intron | 35.0% | |
| TTGAGTTATTTGCATGTGAG+GGG | - | chr8.3:8970252-8970271 | None:intergenic | 35.0% | |
| TTTGCCTAACTACTTTAACC+TGG | - | chr8.3:8970310-8970329 | None:intergenic | 35.0% | |
| ! | GCAAATAACTCAAGCTGTTT+TGG | + | chr8.3:8970259-8970278 | MS.gene57731:CDS | 35.0% |
| AAGGAAATCAAGTGGTGATC+AGG | - | chr8.3:8969214-8969233 | None:intergenic | 40.0% | |
| AAGTCAATACCTGTTCCTGA+TGG | - | chr8.3:8970101-8970120 | None:intergenic | 40.0% | |
| AAGTGGTGATCAGGATTGTT+GGG | - | chr8.3:8969205-8969224 | None:intergenic | 40.0% | |
| AGGGGAAATATGTCTTCTTC+AGG | - | chr8.3:8970161-8970180 | None:intergenic | 40.0% | |
| ATTGCAATATAGCCATCCAC+AGG | - | chr8.3:8969430-8969449 | None:intergenic | 40.0% | |
| CATATTACACACTCCTTTCC+AGG | - | chr8.3:8970419-8970438 | None:intergenic | 40.0% | |
| CGTGTCTTGTATCTTTGTCT+GGG | + | chr8.3:8969875-8969894 | MS.gene57731:intron | 40.0% | |
| CTATCAGTTGCTCAATTGGT+TGG | - | chr8.3:8970663-8970682 | None:intergenic | 40.0% | |
| CTGATGGCTGACAAAATTTC+TGG | - | chr8.3:8970085-8970104 | None:intergenic | 40.0% | |
| GATTTCGATCGTAATGATCC+TGG | + | chr8.3:8970398-8970417 | MS.gene57731:CDS | 40.0% | |
| GCTTGAGTTATTTGCATGTG+AGG | - | chr8.3:8970254-8970273 | None:intergenic | 40.0% | |
| GGATCATTACGATCGAAATC+AGG | - | chr8.3:8970398-8970417 | None:intergenic | 40.0% | |
| TCAAATGCTTCGGGATATAG+AGG | - | chr8.3:8970029-8970048 | None:intergenic | 40.0% | |
| TCGTGTCTTGTATCTTTGTC+TGG | + | chr8.3:8969874-8969893 | MS.gene57731:intron | 40.0% | |
| TCTTAATTAAAAGGGCCCTG+TGG | + | chr8.3:8969411-8969430 | MS.gene57731:intron | 40.0% | |
| TGATTCAGCGCATATTACGA+GGG | - | chr8.3:8970180-8970199 | None:intergenic | 40.0% | |
| TTCCCATTCCAGAAAGGAAT+TGG | + | chr8.3:8970059-8970078 | MS.gene57731:CDS | 40.0% | |
| TTGAAAGTAGTAGCATGTGC+CGG | - | chr8.3:8969808-8969827 | None:intergenic | 40.0% | |
| TTGATTCAGCGCATATTACG+AGG | - | chr8.3:8970181-8970200 | None:intergenic | 40.0% | |
| TTGCAATATAGCCATCCACA+GGG | - | chr8.3:8969429-8969448 | None:intergenic | 40.0% | |
| TTGGAGAAAAACAGTGACAC+TGG | + | chr8.3:8970278-8970297 | MS.gene57731:CDS | 40.0% | |
| ! | CAGAAATTTTGTCAGCCATC+AGG | + | chr8.3:8970083-8970102 | MS.gene57731:CDS | 40.0% |
| ! | GGAGTATCATGATCTTCCAA+AGG | - | chr8.3:8970206-8970225 | None:intergenic | 40.0% |
| ! | TTGTTGTTGCATAGAAAGGG+TGG | - | chr8.3:8969051-8969070 | None:intergenic | 40.0% |
| !! | ATAGAGGGCATCGAAAACAA+AGG | - | chr8.3:8969233-8969252 | None:intergenic | 40.0% |
| !! | ATTTCTGGCCAATTCCTTTC+TGG | - | chr8.3:8970070-8970089 | None:intergenic | 40.0% |
| !! | TCAGGAACAGGTATTGACTT+AGG | + | chr8.3:8970101-8970120 | MS.gene57731:CDS | 40.0% |
| AATTAAAAGGGCCCTGTGGA+TGG | + | chr8.3:8969415-8969434 | MS.gene57731:intron | 45.0% | |
| ATCACGTTCCCATTCCAGAA+AGG | + | chr8.3:8970053-8970072 | MS.gene57731:CDS | 45.0% | |
| CAAGTGGTGATCAGGATTGT+TGG | - | chr8.3:8969206-8969225 | None:intergenic | 45.0% | |
| CAATTGGTTGGCGGCATATA+GGG | - | chr8.3:8970651-8970670 | None:intergenic | 45.0% | |
| CGATCGTAATGATCCTGGAA+AGG | + | chr8.3:8970403-8970422 | MS.gene57731:CDS | 45.0% | |
| CTGGGACAGTGTTTCATTGA+TGG | + | chr8.3:8969893-8969912 | MS.gene57731:intron | 45.0% | |
| GATTCAGCGCATATTACGAG+GGG | - | chr8.3:8970179-8970198 | None:intergenic | 45.0% | |
| GCATCTACTAAGGAACTGAC+AGG | - | chr8.3:8970227-8970246 | None:intergenic | 45.0% | |
| GGTAAGACAGCAGTATCCTT+TGG | - | chr8.3:8970452-8970471 | None:intergenic | 45.0% | |
| TCAATTGGTTGGCGGCATAT+AGG | - | chr8.3:8970652-8970671 | None:intergenic | 45.0% | |
| TCAGTTGCTCAATTGGTTGG+CGG | - | chr8.3:8970660-8970679 | None:intergenic | 45.0% | |
| TGGCCATGAAACTGCAAAGA+AGG | + | chr8.3:8969129-8969148 | MS.gene57731:CDS | 45.0% | |
| ! | AATGATACCATGTGTCGGCA+AGG | - | chr8.3:8970473-8970492 | None:intergenic | 45.0% |
| ! | TGGCCAATTCCTTTCTGGAA+TGG | - | chr8.3:8970065-8970084 | None:intergenic | 45.0% |
| ! | TTTTGTCAGCCATCAGGAAC+AGG | + | chr8.3:8970089-8970108 | MS.gene57731:CDS | 45.0% |
| !! | GGCCAATTCCTTTCTGGAAT+GGG | - | chr8.3:8970064-8970083 | None:intergenic | 45.0% |
| !! | TTCTGGAATGGGAACGTGAT+CGG | - | chr8.3:8970053-8970072 | None:intergenic | 45.0% |
| !! | TTCAAATAAATAAATAAAAA+CGG | - | chr8.3:8969568-8969587 | None:intergenic | 5.0% |
| ACACACTCTGCAGCTTTACC+AGG | + | chr8.3:8969177-8969196 | MS.gene57731:CDS | 50.0% | |
| ATGCGCTGAATCAACGCCTT+TGG | + | chr8.3:8970187-8970206 | MS.gene57731:CDS | 50.0% | |
| CGAGTGTGCAAAAGCTTTGC+GGG | + | chr8.3:8970609-8970628 | MS.gene57731:CDS | 50.0% | |
| CGTGTTCTGTGTATGACACG+TGG | + | chr8.3:8969771-8969790 | MS.gene57731:intron | 50.0% | |
| GATCAGGATTGTTGGGATCC+TGG | - | chr8.3:8969198-8969217 | None:intergenic | 50.0% | |
| GCAGTTTCATGGCCAGTGTA+TGG | - | chr8.3:8969124-8969143 | None:intergenic | 50.0% | |
| GCGAGTGTGCAAAAGCTTTG+CGG | + | chr8.3:8970608-8970627 | MS.gene57731:CDS | 50.0% | |
| GTGAGGGGATGCATCTACTA+AGG | - | chr8.3:8970237-8970256 | None:intergenic | 50.0% | |
| GTTGCATAGAAAGGGTGGTG+AGG | - | chr8.3:8969046-8969065 | None:intergenic | 50.0% | |
| GTTTCATGGCCAGTGTATGG+AGG | - | chr8.3:8969121-8969140 | None:intergenic | 50.0% | |
| TGTCTTACCTTGCCGACACA+TGG | + | chr8.3:8970463-8970482 | MS.gene57731:CDS | 50.0% | |
| ! | CGTGATCGGCTCAAATGCTT+CGG | - | chr8.3:8970039-8970058 | None:intergenic | 50.0% |
| ! | GTGATCGGCTCAAATGCTTC+GGG | - | chr8.3:8970038-8970057 | None:intergenic | 50.0% |
| ! | GTTTTCGATGCCCTCTATCC+TGG | + | chr8.3:8969235-8969254 | MS.gene57731:CDS | 50.0% |
| AGACGAACCTGCCAGGATAG+AGG | - | chr8.3:8969249-8969268 | None:intergenic | 55.0% | |
| CAGTGACACTGGTCCTTTCC+AGG | + | chr8.3:8970289-8970308 | MS.gene57731:CDS | 55.0% | |
| GACGAACCTGCCAGGATAGA+GGG | - | chr8.3:8969248-8969267 | None:intergenic | 55.0% | |
| TAGAAAGGGTGGTGAGGCTG+AGG | - | chr8.3:8969040-8969059 | None:intergenic | 55.0% | |
| TCATGGCCAGTGTATGGAGG+TGG | - | chr8.3:8969118-8969137 | None:intergenic | 55.0% | |
| ! | CGTTGATAGACGAACCTGCC+AGG | - | chr8.3:8969256-8969275 | None:intergenic | 55.0% |
| !! | ACACGTGGTAGTGTCGACAC+CGG | + | chr8.3:8969786-8969805 | MS.gene57731:intron | 55.0% |
| CCACCACCACCTCCATACAC+TGG | + | chr8.3:8969109-8969128 | MS.gene57731:CDS | 60.0% | |
| TCGATGCCCTCTATCCTGGC+AGG | + | chr8.3:8969239-8969258 | MS.gene57731:CDS | 60.0% | |
| TGGCCAGTGTATGGAGGTGG+TGG | - | chr8.3:8969115-8969134 | None:intergenic | 60.0% | |
| ! | CCAGTGTATGGAGGTGGTGG+TGG | - | chr8.3:8969112-8969131 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 8969031 | 8970711 | 8969031 | ID=MS.gene57731 |
| chr8.3 | mRNA | 8969031 | 8970711 | 8969031 | ID=MS.gene57731.t1;Parent=MS.gene57731 |
| chr8.3 | exon | 8969031 | 8969260 | 8969031 | ID=MS.gene57731.t1.exon1;Parent=MS.gene57731.t1 |
| chr8.3 | CDS | 8969031 | 8969260 | 8969031 | ID=cds.MS.gene57731.t1;Parent=MS.gene57731.t1 |
| chr8.3 | exon | 8969974 | 8970484 | 8969974 | ID=MS.gene57731.t1.exon2;Parent=MS.gene57731.t1 |
| chr8.3 | CDS | 8969974 | 8970484 | 8969974 | ID=cds.MS.gene57731.t1;Parent=MS.gene57731.t1 |
| chr8.3 | exon | 8970598 | 8970711 | 8970598 | ID=MS.gene57731.t1.exon3;Parent=MS.gene57731.t1 |
| chr8.3 | CDS | 8970598 | 8970711 | 8970598 | ID=cds.MS.gene57731.t1;Parent=MS.gene57731.t1 |
| Gene Sequence |
| Protein sequence |
