AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene57808

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene57808.t1 MTR_7g046380 57.143 154 61 2 58 210 28 177 2.90e-42 147
MS.gene57808.t1 MTR_4g066310 51.299 154 55 3 58 210 11 145 1.32e-40 137
MS.gene57808.t1 MTR_0002s1270 55.921 152 62 2 60 210 22 169 9.19e-40 140
MS.gene57808.t1 MTR_2g092960 43.262 141 49 5 58 195 765 877 5.81e-19 85.1
MS.gene57808.t1 MTR_5g020725 83.784 37 6 0 58 94 14 50 6.23e-14 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 43 sgRNAs with CRISPR-Local

Find 160 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATCTCACTGACATTTA+TGG 0.125437 6.1:-69373877 None:intergenic
GTTCAATTTGTTTGTTTGTT+TGG 0.203339 6.1:-69374052 None:intergenic
TTCAATTTGTTTGTTTGTTT+GGG 0.210254 6.1:-69374051 None:intergenic
TATGGAGACACTCAAGAATA+TGG 0.260100 6.1:+69374013 MS.gene57808:CDS
TAGATACCACTTGTGAATCT+TGG 0.392656 6.1:-69372325 None:intergenic
TTGGTTGAAAGAACTGAAAA+AGG 0.402618 6.1:+69373717 MS.gene57808:CDS
CTGACATTTATGGTTTGCCT+TGG 0.404375 6.1:-69373867 None:intergenic
ACACCGAGGATAGGATCTTT+AGG 0.412081 6.1:-69373607 None:intergenic
GATATCTTAACAGAGGCTAT+TGG 0.419473 6.1:+69373765 MS.gene57808:CDS
TGACATTTATGGTTTGCCTT+GGG 0.424723 6.1:-69373866 None:intergenic
TTTGTTTGTTTGGGAGGTAT+CGG 0.435440 6.1:-69374042 None:intergenic
AATTTGTTTGTTTGTTTGGG+AGG 0.440214 6.1:-69374048 None:intergenic
ATGGAGACACTCAAGAATAT+GGG 0.460318 6.1:+69374014 MS.gene57808:CDS
ACGAACGAGATGAGCGAAGA+AGG 0.465896 6.1:-69373581 None:intergenic
GGTGGTCATGTCCGTGGTGT+TGG 0.471977 6.1:+69373801 MS.gene57808:CDS
GCTACTATAAGAAATTACTT+TGG 0.474504 6.1:+69373831 MS.gene57808:CDS
AAGAAAATCACAAGGTCGAC+TGG 0.479059 6.1:+69374132 MS.gene57808:CDS
CACTTTCTAAACATTGTCAA+TGG 0.480882 6.1:-69374156 None:intergenic
GAGAAGGAGTGTTGTGTCGT+CGG 0.509746 6.1:-69373522 None:intergenic
GTTGTGTTAGGAAGCACAAA+AGG 0.516282 6.1:+69374092 MS.gene57808:CDS
CATGTCCGTGGTGTTGGAAG+AGG 0.529979 6.1:+69373807 MS.gene57808:CDS
TCATAAGAAGCGGTTGGAGA+AGG 0.536532 6.1:-69373556 None:intergenic
CTATAAGAAATTACTTTGGA+AGG 0.536532 6.1:+69373835 MS.gene57808:CDS
ACGGACATGACCACCATGCT+CGG 0.545117 6.1:-69373793 None:intergenic
TTTGCAAATGTAGGACTCGT+TGG 0.555861 6.1:+69373698 MS.gene57808:intron
AAGGAATCATAAGAAGCGGT+TGG 0.559199 6.1:-69373562 None:intergenic
AGAAAACATACACCGAGGAT+AGG 0.563023 6.1:-69373616 None:intergenic
TTGGAAGGTCTTCATGCCCA+AGG 0.589537 6.1:+69373850 MS.gene57808:CDS
AGTAGAGTTCGAACAACAGA+TGG 0.590629 6.1:+69373959 MS.gene57808:CDS
AAGATATCATGACGTCCTTG+TGG 0.595747 6.1:-69373750 None:intergenic
GCTCCTAAAGATCCTATCCT+CGG 0.599018 6.1:+69373604 MS.gene57808:CDS
GCTATTGGAACATCCGAGCA+TGG 0.623254 6.1:+69373780 MS.gene57808:CDS
CTCTTACCAAGATTCACAAG+TGG 0.624629 6.1:+69372319 MS.gene57808:CDS
AAAGGAACATTTGTTCCACA+AGG 0.665539 6.1:+69373735 MS.gene57808:CDS
GAGCATGGTGGTCATGTCCG+TGG 0.676534 6.1:+69373795 MS.gene57808:CDS
GAAGAAGGAATCATAAGAAG+CGG 0.678199 6.1:-69373566 None:intergenic
GTCGTCGGTCTATCGTAAAG+CGG 0.678947 6.1:-69373507 None:intergenic
GTCGGTCTATCGTAAAGCGG+CGG 0.682666 6.1:-69373504 None:intergenic
TTGCATCAACTGATGCGCTG+TGG 0.684847 6.1:-69373982 None:intergenic
TGCAGCACAAGAAAATCACA+AGG 0.697521 6.1:+69374124 MS.gene57808:CDS
ACGTCATGATATCTTAACAG+AGG 0.706045 6.1:+69373758 MS.gene57808:CDS
TAGCACCTCTTCCAACACCA+CGG 0.722854 6.1:-69373812 None:intergenic
ATTGGAACATCCGAGCATGG+TGG 0.723034 6.1:+69373783 MS.gene57808:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCTATTTTCAATTATATTA+AGG - chr6.1:69373016-69373035 None:intergenic 10.0%
!!! TTTTCAATTATATTAAGGAT+CGG - chr6.1:69373011-69373030 None:intergenic 15.0%
!! AGATAACAGGTATAAAATTA+GGG - chr6.1:69373468-69373487 None:intergenic 20.0%
!! ATTATAGAACTAACCTTTAA+AGG + chr6.1:69372424-69372443 MS.gene57808:intron 20.0%
!! TAGATAACAGGTATAAAATT+AGG - chr6.1:69373469-69373488 None:intergenic 20.0%
!! TTCTATAATTGATGCAAATA+TGG - chr6.1:69372413-69372432 None:intergenic 20.0%
!!! TTCAATTTGTTTGTTTGTTT+GGG - chr6.1:69374054-69374073 None:intergenic 20.0%
! AAAATAGAAATGGTATTCGA+TGG - chr6.1:69372807-69372826 None:intergenic 25.0%
! ATAAAATTAGGGTATGAGAA+AGG - chr6.1:69373457-69373476 None:intergenic 25.0%
! ATTATATTAAGGATCGGATA+TGG - chr6.1:69373005-69373024 None:intergenic 25.0%
! CTATAAGAAATTACTTTGGA+AGG + chr6.1:69373835-69373854 MS.gene57808:CDS 25.0%
! GCTACTATAAGAAATTACTT+TGG + chr6.1:69373831-69373850 MS.gene57808:CDS 25.0%
! GTTGATGCAAAAATCATTTA+TGG + chr6.1:69373995-69374014 MS.gene57808:CDS 25.0%
! TAAAATTAGGGTATGAGAAA+GGG - chr6.1:69373456-69373475 None:intergenic 25.0%
!! GTTCAATTTGTTTGTTTGTT+TGG - chr6.1:69374055-69374074 None:intergenic 25.0%
!! TATATGTGTTTTGCAAATGT+AGG + chr6.1:69373689-69373708 MS.gene57808:intron 25.0%
!!! AGAGGTTTTAATCAAATCAA+TGG - chr6.1:69372935-69372954 None:intergenic 25.0%
AAGCTAAATACTTCCCAAAT+GGG - chr6.1:69372642-69372661 None:intergenic 30.0%
ACTTGCAGCAAAAATTAAAG+CGG + chr6.1:69373929-69373948 MS.gene57808:CDS 30.0%
AGCAATTCCATCTTATTGTA+TGG - chr6.1:69372908-69372927 None:intergenic 30.0%
GCAATTCCATCTTATTGTAT+GGG - chr6.1:69372907-69372926 None:intergenic 30.0%
TATGGAATAGAATCTCTTGT+TGG - chr6.1:69372987-69373006 None:intergenic 30.0%
TCTGAAAAAGTTGTTGTGTT+AGG + chr6.1:69374080-69374099 MS.gene57808:CDS 30.0%
TTCAATCTCACTGACATTTA+TGG - chr6.1:69373880-69373899 None:intergenic 30.0%
TTGGTTGAAAGAACTGAAAA+AGG + chr6.1:69373717-69373736 MS.gene57808:CDS 30.0%
! AATTTGTTTGTTTGTTTGGG+AGG - chr6.1:69374051-69374070 None:intergenic 30.0%
! AGAAAGGGTATGAGAAATTA+GGG - chr6.1:69373408-69373427 None:intergenic 30.0%
! AGAGAATGCTTAACTCTTTT+TGG - chr6.1:69372846-69372865 None:intergenic 30.0%
! CTTTAAAGGAAGATTAGAAG+CGG + chr6.1:69372438-69372457 MS.gene57808:intron 30.0%
! TTGATGCAAATATGGTTTGT+TGG - chr6.1:69372405-69372424 None:intergenic 30.0%
! TTTCTTTTACCAACTTCCAT+TGG - chr6.1:69372880-69372899 None:intergenic 30.0%
!! AAATGTCCTTTTTCTAGTAG+TGG - chr6.1:69373088-69373107 None:intergenic 30.0%
!! AATGCTTAACTCTTTTTGGT+GGG - chr6.1:69372842-69372861 None:intergenic 30.0%
!! AATGTCCTTTTTCTAGTAGT+GGG - chr6.1:69373087-69373106 None:intergenic 30.0%
!! TGCATCATTTTTGAGAGAAA+GGG - chr6.1:69373423-69373442 None:intergenic 30.0%
!!! ACAACAACTTTTTCAGAACA+AGG - chr6.1:69374077-69374096 None:intergenic 30.0%
AAAGGAACATTTGTTCCACA+AGG + chr6.1:69373735-69373754 MS.gene57808:CDS 35.0%
AAATTGACCATGAGGAAAGA+AGG - chr6.1:69372772-69372791 None:intergenic 35.0%
AAGACTCCCATACAATAAGA+TGG + chr6.1:69372898-69372917 MS.gene57808:intron 35.0%
AATTGACCATGAGGAAAGAA+GGG - chr6.1:69372771-69372790 None:intergenic 35.0%
ACGTCATGATATCTTAACAG+AGG + chr6.1:69373758-69373777 MS.gene57808:CDS 35.0%
AGAGAAAGAGAAAGAGAAGA+CGG - chr6.1:69373660-69373679 None:intergenic 35.0%
AGCTAAATACTTCCCAAATG+GGG - chr6.1:69372641-69372660 None:intergenic 35.0%
AGTAAAATGTTGTCTCAAGC+TGG - chr6.1:69372961-69372980 None:intergenic 35.0%
ATGGAGACACTCAAGAATAT+GGG + chr6.1:69374014-69374033 MS.gene57808:CDS 35.0%
ATGGCTCTTTGATACCAATT+TGG - chr6.1:69372516-69372535 None:intergenic 35.0%
ATGTACCCACTACTAGAAAA+AGG + chr6.1:69373079-69373098 MS.gene57808:intron 35.0%
ATGTCTTCACATTGGCATAT+AGG + chr6.1:69373195-69373214 MS.gene57808:intron 35.0%
CAACATCTATGGTTTCAACT+TGG - chr6.1:69372731-69372750 None:intergenic 35.0%
CAATGTTAGGGAAATAAGGT+TGG - chr6.1:69372708-69372727 None:intergenic 35.0%
CGCTTCTAATCTTCCTTTAA+AGG - chr6.1:69372440-69372459 None:intergenic 35.0%
CTCCTAAAAAATCCCCATTT+GGG + chr6.1:69372626-69372645 MS.gene57808:intron 35.0%
GAAGAAGGAATCATAAGAAG+CGG - chr6.1:69373569-69373588 None:intergenic 35.0%
GAAGCTAAATACTTCCCAAA+TGG - chr6.1:69372643-69372662 None:intergenic 35.0%
GATATCTTAACAGAGGCTAT+TGG + chr6.1:69373765-69373784 MS.gene57808:CDS 35.0%
GCGAAAGGTGAAAATAGAAA+TGG - chr6.1:69372817-69372836 None:intergenic 35.0%
GGCATAATCCTAGATATGTT+TGG - chr6.1:69372597-69372616 None:intergenic 35.0%
GTATGAGAAATTAGGGTTGA+GGG - chr6.1:69373401-69373420 None:intergenic 35.0%
GTTTCAACTTGGCAATGTTA+GGG - chr6.1:69372720-69372739 None:intergenic 35.0%
TAGATACCACTTGTGAATCT+TGG - chr6.1:69372328-69372347 None:intergenic 35.0%
TATGCATCATGTCTTCACAT+TGG + chr6.1:69373187-69373206 MS.gene57808:intron 35.0%
TATGGAGACACTCAAGAATA+TGG + chr6.1:69374013-69374032 MS.gene57808:CDS 35.0%
TTGGCAATGTTAGGGAAATA+AGG - chr6.1:69372712-69372731 None:intergenic 35.0%
! GAATGCTTAACTCTTTTTGG+TGG - chr6.1:69372843-69372862 None:intergenic 35.0%
! GAGAAAGGGTATGAGAAATT+AGG - chr6.1:69373409-69373428 None:intergenic 35.0%
! TACCAATTTGGAATACTCCA+TGG - chr6.1:69372504-69372523 None:intergenic 35.0%
! TGACATTTATGGTTTGCCTT+GGG - chr6.1:69373869-69373888 None:intergenic 35.0%
! TTTGTTTGTTTGGGAGGTAT+CGG - chr6.1:69374045-69374064 None:intergenic 35.0%
!! ACGCGTGTTTATTTTCTCAT+AGG - chr6.1:69373294-69373313 None:intergenic 35.0%
!! ATGCTTAACTCTTTTTGGTG+GGG - chr6.1:69372841-69372860 None:intergenic 35.0%
!! CGCGTGTTTATTTTCTCATA+GGG - chr6.1:69373293-69373312 None:intergenic 35.0%
!! GTGCATCATTTTTGAGAGAA+AGG - chr6.1:69373424-69373443 None:intergenic 35.0%
!! GTGTTTATTTTCTCATAGGG+AGG - chr6.1:69373290-69373309 None:intergenic 35.0%
!! TTGCTTTTGCCATCAAGTAA+TGG - chr6.1:69373137-69373156 None:intergenic 35.0%
!!! ATTTTTTAGGAGCGTCATCA+GGG - chr6.1:69372618-69372637 None:intergenic 35.0%
!!! TTCCCAAATGGGGATTTTTT+AGG - chr6.1:69372631-69372650 None:intergenic 35.0%
AAGAAAATCACAAGGTCGAC+TGG + chr6.1:69374132-69374151 MS.gene57808:CDS 40.0%
AAGATATCATGACGTCCTTG+TGG - chr6.1:69373753-69373772 None:intergenic 40.0%
AAGGAATCATAAGAAGCGGT+TGG - chr6.1:69373565-69373584 None:intergenic 40.0%
AGAAAACATACACCGAGGAT+AGG - chr6.1:69373619-69373638 None:intergenic 40.0%
AGAGAAGAAAACATACACCG+AGG - chr6.1:69373624-69373643 None:intergenic 40.0%
AGTAGAGTTCGAACAACAGA+TGG + chr6.1:69373959-69373978 MS.gene57808:CDS 40.0%
ATCAGTGGAAATAATGCCTG+AGG + chr6.1:69373256-69373275 MS.gene57808:intron 40.0%
ATCAGTGGACCATTACTTGA+TGG + chr6.1:69373125-69373144 MS.gene57808:intron 40.0%
ATCTCATCACCAATGGAAGT+TGG + chr6.1:69372868-69372887 MS.gene57808:intron 40.0%
ATGCTACGCCAAACATATCT+AGG + chr6.1:69372586-69372605 MS.gene57808:intron 40.0%
ATTCTAGACACCATAGCATC+AGG + chr6.1:69372667-69372686 MS.gene57808:intron 40.0%
ATTGACCATGAGGAAAGAAG+GGG - chr6.1:69372770-69372789 None:intergenic 40.0%
CATCAGAGATTTCACATCAG+TGG + chr6.1:69373110-69373129 MS.gene57808:intron 40.0%
CGTTTGAGCACTTAGATAAC+AGG - chr6.1:69373481-69373500 None:intergenic 40.0%
CTCTTACCAAGATTCACAAG+TGG + chr6.1:69372319-69372338 MS.gene57808:CDS 40.0%
CTTGGGATAAATTGACCATG+AGG - chr6.1:69372780-69372799 None:intergenic 40.0%
GATACCTGAAGGGAAAACAT+TGG + chr6.1:69373217-69373236 MS.gene57808:intron 40.0%
GCTCCTAAAAAATCCCCATT+TGG + chr6.1:69372625-69372644 MS.gene57808:intron 40.0%
GGTATGAGAAATTAGGGTTG+AGG - chr6.1:69373402-69373421 None:intergenic 40.0%
GGTTTCAACTTGGCAATGTT+AGG - chr6.1:69372721-69372740 None:intergenic 40.0%
GTAGTGTGAGTGACAACATA+CGG + chr6.1:69372460-69372479 MS.gene57808:intron 40.0%
GTGGGTACATGAAGATATCT+TGG - chr6.1:69373069-69373088 None:intergenic 40.0%
TAGTGTGAGTGACAACATAC+GGG + chr6.1:69372461-69372480 MS.gene57808:intron 40.0%
TCAGTGGAAATAATGCCTGA+GGG + chr6.1:69373257-69373276 MS.gene57808:intron 40.0%
TCTCTCTATCTCATCACCAA+TGG + chr6.1:69372861-69372880 MS.gene57808:intron 40.0%
TGCAGCACAAGAAAATCACA+AGG + chr6.1:69374124-69374143 MS.gene57808:CDS 40.0%
TGGCATATAGGATACCTGAA+GGG + chr6.1:69373207-69373226 MS.gene57808:intron 40.0%
TTCTAGACACCATAGCATCA+GGG + chr6.1:69372668-69372687 MS.gene57808:intron 40.0%
TTGGCATATAGGATACCTGA+AGG + chr6.1:69373206-69373225 MS.gene57808:intron 40.0%
TTTCTTACTCCTACCAGTCA+TGG + chr6.1:69373035-69373054 MS.gene57808:intron 40.0%
TTTGCAAATGTAGGACTCGT+TGG + chr6.1:69373698-69373717 MS.gene57808:intron 40.0%
! ACTTGATGGCAAAAGCAACA+CGG + chr6.1:69373139-69373158 MS.gene57808:intron 40.0%
! AGCCATGGAGTATTCCAAAT+TGG + chr6.1:69372499-69372518 MS.gene57808:intron 40.0%
! CTGACATTTATGGTTTGCCT+TGG - chr6.1:69373870-69373889 None:intergenic 40.0%
! GTTGTGTTAGGAAGCACAAA+AGG + chr6.1:69374092-69374111 MS.gene57808:CDS 40.0%
!!! GAAGGAGTGATGTTTTGAGA+AGG - chr6.1:69373541-69373560 None:intergenic 40.0%
!!! GATTTTTTAGGAGCGTCATC+AGG - chr6.1:69372619-69372638 None:intergenic 40.0%
ACACCGAGGATAGGATCTTT+AGG - chr6.1:69373610-69373629 None:intergenic 45.0%
ATGGGCTTTCGCAACATCTA+TGG - chr6.1:69372742-69372761 None:intergenic 45.0%
ATGGTATTCGATGGCTGACT+TGG - chr6.1:69372798-69372817 None:intergenic 45.0%
CAGTGGAAATAATGCCTGAG+GGG + chr6.1:69373258-69373277 MS.gene57808:intron 45.0%
CCTGAAGGGAAAACATTGGA+CGG + chr6.1:69373221-69373240 MS.gene57808:intron 45.0%
GATATGTTTGGCGTAGCATC+TGG - chr6.1:69372585-69372604 None:intergenic 45.0%
GCAGGATACCGTTGGAAAAT+TGG - chr6.1:69372541-69372560 None:intergenic 45.0%
GCTCCTAAAGATCCTATCCT+CGG + chr6.1:69373604-69373623 MS.gene57808:CDS 45.0%
GTCCTCTCGAACATTGTTGA+AGG - chr6.1:69372563-69372582 None:intergenic 45.0%
GTTGTCTCAAGCTGGTAAAG+AGG - chr6.1:69372953-69372972 None:intergenic 45.0%
TACCGTTGGAAAATTGGCGA+TGG - chr6.1:69372535-69372554 None:intergenic 45.0%
TCATAAGAAGCGGTTGGAGA+AGG - chr6.1:69373559-69373578 None:intergenic 45.0%
TCTCGAACATTGTTGAAGGC+AGG - chr6.1:69372559-69372578 None:intergenic 45.0%
TGCCTTCAACAATGTTCGAG+AGG + chr6.1:69372558-69372577 MS.gene57808:intron 45.0%
TTACTCCTACCAGTCATGGA+CGG + chr6.1:69373039-69373058 MS.gene57808:intron 45.0%
TTAGGGTATGAGAAAGGGTC+TGG - chr6.1:69373451-69373470 None:intergenic 45.0%
TTTGCATCATTACGCAGCCA+TGG + chr6.1:69372484-69372503 MS.gene57808:intron 45.0%
! AGCCATCGCCAATTTTCCAA+CGG + chr6.1:69372530-69372549 MS.gene57808:intron 45.0%
! TGGTATTCGATGGCTGACTT+GGG - chr6.1:69372797-69372816 None:intergenic 45.0%
ACCATGAGGAAAGAAGGGGT+TGG - chr6.1:69372766-69372785 None:intergenic 50.0%
ACGAACGAGATGAGCGAAGA+AGG - chr6.1:69373584-69373603 None:intergenic 50.0%
AGACACCATAGCATCAGGGT+TGG + chr6.1:69372672-69372691 MS.gene57808:intron 50.0%
ATTGGAACATCCGAGCATGG+TGG + chr6.1:69373783-69373802 MS.gene57808:CDS 50.0%
CTTGACCAACCCTGATGCTA+TGG - chr6.1:69372680-69372699 None:intergenic 50.0%
GAAGGGAAAACATTGGACGG+TGG + chr6.1:69373224-69373243 MS.gene57808:intron 50.0%
GCTATTGGAACATCCGAGCA+TGG + chr6.1:69373780-69373799 MS.gene57808:CDS 50.0%
GTCGTCGGTCTATCGTAAAG+CGG - chr6.1:69373510-69373529 None:intergenic 50.0%
TAGCACCTCTTCCAACACCA+CGG - chr6.1:69373815-69373834 None:intergenic 50.0%
TGATGGCAAAAGCAACACGG+TGG + chr6.1:69373142-69373161 MS.gene57808:intron 50.0%
TGTTGAAGGCAGGATACCGT+TGG - chr6.1:69372549-69372568 None:intergenic 50.0%
TTGCATCAACTGATGCGCTG+TGG - chr6.1:69373985-69374004 None:intergenic 50.0%
TTGGAAGGTCTTCATGCCCA+AGG + chr6.1:69373850-69373869 MS.gene57808:CDS 50.0%
! AGGAAAGAAGGGGTTGGCAT+GGG - chr6.1:69372760-69372779 None:intergenic 50.0%
! CCGTCCAATGTTTTCCCTTC+AGG - chr6.1:69373224-69373243 None:intergenic 50.0%
!! GAGAAGGAGTGTTGTGTCGT+CGG - chr6.1:69373525-69373544 None:intergenic 50.0%
!! TCTTTTTGGTGGGGTGCGAA+AGG - chr6.1:69372832-69372851 None:intergenic 50.0%
!!! CGGTGGCTTTTTCACATCAG+TGG + chr6.1:69373241-69373260 MS.gene57808:intron 50.0%
ACGGACATGACCACCATGCT+CGG - chr6.1:69373796-69373815 None:intergenic 55.0%
CTTGGTCTACCGTCCATGAC+TGG - chr6.1:69373051-69373070 None:intergenic 55.0%
GCCAACCCCTTCTTTCCTCA+TGG + chr6.1:69372762-69372781 MS.gene57808:intron 55.0%
GTCGGTCTATCGTAAAGCGG+CGG - chr6.1:69373507-69373526 None:intergenic 55.0%
GTCTACCGTCCATGACTGGT+AGG - chr6.1:69373047-69373066 None:intergenic 55.0%
! CATGTCCGTGGTGTTGGAAG+AGG + chr6.1:69373807-69373826 MS.gene57808:CDS 55.0%
! GAGGAAAGAAGGGGTTGGCA+TGG - chr6.1:69372761-69372780 None:intergenic 55.0%
!! TAGGGAGGCTTTTTCCCCTC+AGG - chr6.1:69373275-69373294 None:intergenic 55.0%
GAGCATGGTGGTCATGTCCG+TGG + chr6.1:69373795-69373814 MS.gene57808:CDS 60.0%
GGTGGTCATGTCCGTGGTGT+TGG + chr6.1:69373801-69373820 MS.gene57808:CDS 60.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 69372307 69374172 69372307 ID=MS.gene57808
chr6.1 mRNA 69372307 69374172 69372307 ID=MS.gene57808.t1;Parent=MS.gene57808
chr6.1 exon 69372307 69372340 69372307 ID=MS.gene57808.t1.exon1;Parent=MS.gene57808.t1
chr6.1 CDS 69372307 69372340 69372307 ID=cds.MS.gene57808.t1;Parent=MS.gene57808.t1
chr6.1 exon 69373491 69373627 69373491 ID=MS.gene57808.t1.exon2;Parent=MS.gene57808.t1
chr6.1 CDS 69373491 69373627 69373491 ID=cds.MS.gene57808.t1;Parent=MS.gene57808.t1
chr6.1 exon 69373711 69374172 69373711 ID=MS.gene57808.t1.exon3;Parent=MS.gene57808.t1
chr6.1 CDS 69373711 69374172 69373711 ID=cds.MS.gene57808.t1;Parent=MS.gene57808.t1
Gene Sequence

>MS.gene57808

ATGATTTCATCACTCTTACCAAGATTCACAAGTGGTATCTATAATATTTCATTAGCATCTCTATCACAGAAATTCTCTTGCACATAAGTGCTATTCCAACAAACCATATTTGCATCAATTATAGAACTAACCTTTAAAGGAAGATTAGAAGCGGTAGTGTGAGTGACAACATACGGGTTTGCATCATTACGCAGCCATGGAGTATTCCAAATTGGTATCAAAGAGCCATCGCCAATTTTCCAACGGTATCCTGCCTTCAACAATGTTCGAGAGGACCAGATGCTACGCCAAACATATCTAGGATTATGCCCTGATGACGCTCCTAAAAAATCCCCATTTGGGAAGTATTTAGCTTCGAAGATTCTAGACACCATAGCATCAGGGTTGGTCAAGAAATTCCAACCTTATTTCCCTAACATTGCCAAGTTGAAACCATAGATGTTGCGAAAGCCCATGCCAACCCCTTCTTTCCTCATGGTCAATTTATCCCAAGTCAGCCATCGAATACCATTTCTATTTTCACCTTTCGCACCCCACCAAAAAGAGTTAAGCATTCTCTCTATCTCATCACCAATGGAAGTTGGTAAAAGAAAGACTCCCATACAATAAGATGGAATTGCTTGTGCCATTGATTTGATTAAAACCTCTTTACCAGCTTGAGACAACATTTTACTGCTCCAACAAGAGATTCTATTCCATATCCGATCCTTAATATAATTGAAAATAGATTTCTTACTCCTACCAGTCATGGACGGTAGACCAAGATATCTTCATGTACCCACTACTAGAAAAAGGACATTTAACATCAGAGATTTCACATCAGTGGACCATTACTTGATGGCAAAAGCAACACGGTGGCATTTTTGTAATTATTGCAAAATATGCATCATGTCTTCACATTGGCATATAGGATACCTGAAGGGAAAACATTGGACGGTGGCTTTTTCACATCAGTGGAAATAATGCCTGAGGGGAAAAAGCCTCCCTATGAGAAAATAAACACGCGTACATAGATCTAAAGTTCACAATTAGCTTTCTTCTCAACTCTCACGCGTACGACATATCTAAAGTTCACAAAGCTTTCTTCTTAACCCTCAACCCTAATTTCTCATACCCTTTCTCTCAAAAATGATGCACAGATCCAGACCCTTTCTCATACCCTAATTTTATACCTGTTATCTAAGTGCTCAAACGTTGCCGCCGCTTTACGATAGACCGACGACACAACACTCCTTCTCAAAACATCACTCCTTCTCCAACCGCTTCTTATGATTCCTTCTTCGCTCATCTCGTTCGTGCTCCTAAAGATCCTATCCTCGGTGTATGTTTTCTTCTCTTTCTCTTCTGATTCCGTCTTCTCTTTCTCTTTCTCTTTCTCAAAATATATGTGTTTTGCAAATGTAGGACTCGTTGGTTGAAAGAACTGAAAAAGGAACATTTGTTCCACAAGGACGTCATGATATCTTAACAGAGGCTATTGGAACATCCGAGCATGGTGGTCATGTCCGTGGTGTTGGAAGAGGTGCTACTATAAGAAATTACTTTGGAAGGTCTTCATGCCCAAGGCAAACCATAAATGTCAGTGAGATTGAAGCAAAAATTGAAGCAAAAATTGAAGAAAAACTTGCAGCAAAAATTAAAGCGGAATGCAAAGTAGAGTTCGAACAACAGATGGCCACAGCGCATCAGTTGATGCAAAAATCATTTATGGAGACACTCAAGAATATGGGCTTATCCGATACCTCCCAAACAAACAAACAAATTGAACCTTGTTCTGAAAAAGTTGTTGTGTTAGGAAGCACAAAAGGTTCTTGTTCTGCAGCACAAGAAAATCACAAGGTCGACTGGACCATTGACAATGTTTAG
Protein sequence

>MS.gene57808.t1

MISSLLPRFTSVLKRCRRFTIDRRHNTPSQNITPSPTASYDSFFAHLVRAPKDPILGDSLVERTEKGTFVPQGRHDILTEAIGTSEHGGHVRGVGRGATIRNYFGRSSCPRQTINVSEIEAKIEAKIEEKLAAKIKAECKVEFEQQMATAHQLMQKSFMETLKNMGLSDTSQTNKQIEPCSEKVVVLGSTKGSCSAAQENHKVDWTIDNV