Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57866.t1 | XP_003616447.1 | 100 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 1.40E-79 | 305.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57866.t1 | P09187 | 79.5 | 146 | 30 | 0 | 1 | 146 | 1 | 146 | 3.0e-62 | 239.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57866.t1 | G7KGS8 | 100.0 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 1.0e-79 | 305.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057406 | MS.gene57866 | 0.814553 | 1.45E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57866.t1 | MTR_5g080400 | 100.000 | 153 | 0 | 0 | 1 | 153 | 1 | 153 | 6.45e-113 | 317 |
| MS.gene57866.t1 | MTR_5g080440 | 84.247 | 146 | 23 | 0 | 1 | 146 | 1 | 146 | 5.18e-89 | 256 |
| MS.gene57866.t1 | MTR_5g081030 | 82.192 | 146 | 26 | 0 | 1 | 146 | 1 | 146 | 3.86e-86 | 248 |
| MS.gene57866.t1 | MTR_5g041610 | 81.507 | 146 | 27 | 0 | 1 | 146 | 1 | 146 | 3.91e-84 | 243 |
| MS.gene57866.t1 | MTR_1g011540 | 82.192 | 146 | 25 | 1 | 1 | 146 | 1 | 145 | 1.64e-83 | 242 |
| MS.gene57866.t1 | MTR_5g081000 | 80.822 | 146 | 27 | 1 | 1 | 146 | 1 | 145 | 1.98e-82 | 239 |
| MS.gene57866.t1 | MTR_5g066070 | 78.082 | 146 | 32 | 0 | 1 | 146 | 1 | 146 | 2.52e-82 | 239 |
| MS.gene57866.t1 | MTR_5g080400 | 100.000 | 111 | 0 | 0 | 43 | 153 | 1 | 111 | 2.51e-79 | 230 |
| MS.gene57866.t1 | MTR_1g090820 | 73.103 | 145 | 38 | 1 | 1 | 144 | 1 | 145 | 1.13e-73 | 217 |
| MS.gene57866.t1 | MTR_1g049330 | 65.986 | 147 | 49 | 1 | 1 | 146 | 1 | 147 | 4.63e-66 | 198 |
| MS.gene57866.t1 | MTR_5g080900 | 67.123 | 146 | 33 | 2 | 1 | 146 | 1 | 131 | 3.28e-61 | 185 |
| MS.gene57866.t1 | MTR_1g090810 | 59.868 | 152 | 52 | 3 | 2 | 146 | 3 | 152 | 4.80e-59 | 180 |
| MS.gene57866.t1 | MTR_5g066070 | 77.358 | 106 | 24 | 0 | 1 | 106 | 1 | 106 | 1.83e-57 | 174 |
| MS.gene57866.t1 | MTR_1g090820 | 71.963 | 107 | 29 | 1 | 1 | 106 | 1 | 107 | 1.92e-51 | 159 |
| MS.gene57866.t1 | MTR_1g090820 | 69.903 | 103 | 30 | 1 | 43 | 144 | 1 | 103 | 2.70e-46 | 146 |
| MS.gene57866.t1 | MTR_7g110180 | 64.463 | 121 | 30 | 2 | 1 | 121 | 1 | 108 | 8.93e-46 | 145 |
| MS.gene57866.t1 | MTR_4g068870 | 47.333 | 150 | 73 | 3 | 3 | 147 | 49 | 197 | 9.67e-35 | 120 |
| MS.gene57866.t1 | MTR_4g068870 | 47.368 | 152 | 74 | 3 | 1 | 147 | 12 | 162 | 3.12e-34 | 122 |
| MS.gene57866.t1 | MTR_4g068870 | 47.333 | 150 | 73 | 3 | 3 | 147 | 178 | 326 | 1.37e-33 | 120 |
| MS.gene57866.t1 | MTR_4g068870 | 47.368 | 152 | 74 | 3 | 1 | 147 | 12 | 162 | 3.65e-34 | 122 |
| MS.gene57866.t1 | MTR_4g068870 | 47.333 | 150 | 73 | 3 | 3 | 147 | 185 | 333 | 1.53e-33 | 120 |
| MS.gene57866.t1 | MTR_4g068870 | 47.333 | 150 | 73 | 3 | 3 | 147 | 132 | 280 | 5.79e-34 | 120 |
| MS.gene57866.t1 | MTR_4g068870 | 46.364 | 110 | 53 | 3 | 43 | 147 | 1 | 109 | 5.46e-21 | 87.0 |
| MS.gene57866.t1 | MTR_0026s0210 | 46.053 | 152 | 76 | 3 | 1 | 147 | 12 | 162 | 1.59e-33 | 120 |
| MS.gene57866.t1 | MTR_0026s0210 | 45.333 | 150 | 76 | 3 | 3 | 147 | 185 | 333 | 1.03e-32 | 119 |
| MS.gene57866.t1 | MTR_4g068860 | 44.000 | 150 | 80 | 2 | 2 | 147 | 8 | 157 | 4.43e-33 | 114 |
| MS.gene57866.t1 | MTR_4g068860 | 42.342 | 111 | 60 | 2 | 2 | 108 | 8 | 118 | 1.37e-20 | 82.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57866.t1 | AT3G10520 | 54.305 | 151 | 65 | 2 | 1 | 147 | 4 | 154 | 3.37e-53 | 166 |
| MS.gene57866.t1 | AT2G16060 | 45.695 | 151 | 78 | 2 | 3 | 149 | 9 | 159 | 8.33e-36 | 122 |
Find 27 sgRNAs with CRISPR-Local
Find 129 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAGGATCAACAACTCCTCTT+TGG | 0.329523 | 5.2:+68275062 | None:intergenic |
| GGAAATTGCTTACGATGAAT+TGG | 0.358738 | 5.2:-68274711 | MS.gene57866:CDS |
| ACTTCAAGCTCATGCTGAAA+AGG | 0.433229 | 5.2:-68276878 | MS.gene57866:CDS |
| GCTGTTCAACTTCGAGCAAC+CGG | 0.447898 | 5.2:-68275127 | MS.gene57866:CDS |
| CGAAGAATTAAATACTGCTT+GGG | 0.451745 | 5.2:-68274732 | MS.gene57866:CDS |
| AAAACAATAAAGGAAGCATC+GGG | 0.452747 | 5.2:-68274767 | MS.gene57866:CDS |
| TCATTCAAACAAAACCTTCC+CGG | 0.458621 | 5.2:-68277124 | MS.gene57866:CDS |
| GCGAAGAATTAAATACTGCT+TGG | 0.487440 | 5.2:-68274733 | MS.gene57866:CDS |
| TCAGCATGAGCTTGAAGTTG+AGG | 0.489335 | 5.2:+68276883 | None:intergenic |
| CAACAACTCCTCTTTGGATG+TGG | 0.506042 | 5.2:+68275068 | None:intergenic |
| GAGAACATGCCCTTTGCTGC+AGG | 0.509764 | 5.2:+68276940 | None:intergenic |
| ATATCCCAACACTACTTCTC+CGG | 0.514949 | 5.2:+68275108 | None:intergenic |
| GTAGAACAAAACACTATAGC+CGG | 0.526023 | 5.2:+68277105 | None:intergenic |
| AGTGTTGGGATATACTAAAG+TGG | 0.527290 | 5.2:-68275098 | MS.gene57866:CDS |
| GAGAAAGCACCTGCAGCAAA+GGG | 0.529817 | 5.2:-68276949 | MS.gene57866:CDS |
| AGAGAAAGCACCTGCAGCAA+AGG | 0.535037 | 5.2:-68276950 | MS.gene57866:CDS |
| TATTATCATACCACAAAATG+AGG | 0.540505 | 5.2:+68275043 | None:intergenic |
| TGCTGAAAAGGTGTTTCAAA+TGG | 0.544527 | 5.2:-68276866 | MS.gene57866:intron |
| GCAACCGGAGAAGTAGTGTT+GGG | 0.546791 | 5.2:-68275112 | MS.gene57866:CDS |
| AACAATAAAGGAAGCATCGG+GGG | 0.576203 | 5.2:-68274765 | MS.gene57866:CDS |
| AGCAACCGGAGAAGTAGTGT+TGG | 0.578114 | 5.2:-68275113 | MS.gene57866:CDS |
| TAGAACAAAACACTATAGCC+GGG | 0.583180 | 5.2:+68277106 | None:intergenic |
| ACAAAACACTATAGCCGGGA+AGG | 0.614625 | 5.2:+68277110 | None:intergenic |
| GTGTTGGGATATACTAAAGT+GGG | 0.625346 | 5.2:-68275097 | MS.gene57866:CDS |
| GGTGCTATCCACATCCAAAG+AGG | 0.668989 | 5.2:-68275076 | MS.gene57866:CDS |
| TGTATTATAGGTGCGTGATG+CGG | 0.669373 | 5.2:-68275149 | MS.gene57866:intron |
| AAACAATAAAGGAAGCATCG+GGG | 0.711135 | 5.2:-68274766 | MS.gene57866:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATACATGTATTTAA+AGG | + | chr5.2:68275075-68275094 | None:intergenic | 10.0% |
| !! | TTAATTAACAAAAATATGTT+TGG | - | chr5.2:68274839-68274858 | MS.gene57866:intron | 10.0% |
| !!! | ATTTATACTTTTTGTATTAT+AGG | - | chr5.2:68276675-68276694 | MS.gene57866:intron | 10.0% |
| !!! | ATTTTATTATATAAGTTATC+TGG | + | chr5.2:68275298-68275317 | None:intergenic | 10.0% |
| !!! | GATTTATTTTTATTGAAATT+CGG | + | chr5.2:68275276-68275295 | None:intergenic | 10.0% |
| !! | AAGAAAGAAAAAAAATTGAA+TGG | - | chr5.2:68276859-68276878 | MS.gene57866:intron | 15.0% |
| !! | AGAAAGAAAAAAAATTGAAT+GGG | - | chr5.2:68276860-68276879 | MS.gene57866:intron | 15.0% |
| !! | TAGTATTTGATATTATTCTT+TGG | + | chr5.2:68276612-68276631 | None:intergenic | 15.0% |
| !! | TGTCACATTAATTTAAATTT+AGG | - | chr5.2:68276461-68276480 | MS.gene57866:intron | 15.0% |
| !! | TTAAATTTAGGAAGAAAAAA+TGG | - | chr5.2:68276473-68276492 | MS.gene57866:intron | 15.0% |
| !!! | AATTTTTTTTCTTTCTTTCT+AGG | + | chr5.2:68276856-68276875 | None:intergenic | 15.0% |
| !!! | CTATCACAATTATAAAATTT+TGG | - | chr5.2:68275569-68275588 | MS.gene57866:intron | 15.0% |
| !!! | TAAACCAAAATTAATGTTTT+TGG | - | chr5.2:68277015-68277034 | MS.gene57866:intron | 15.0% |
| !!! | TATATTTTTCGAATAGTTTA+TGG | - | chr5.2:68276636-68276655 | MS.gene57866:intron | 15.0% |
| !!! | TTAAACCCTAATTTAAAATT+GGG | - | chr5.2:68276166-68276185 | MS.gene57866:intron | 15.0% |
| !! | AAATATGATCCAAAAATGTT+GGG | - | chr5.2:68275160-68275179 | MS.gene57866:intron | 20.0% |
| !! | ATACTACTAAATTACAAAGA+CGG | - | chr5.2:68276499-68276518 | MS.gene57866:intron | 20.0% |
| !! | ATTAAAAAAGCAGTTAAACT+TGG | - | chr5.2:68277156-68277175 | MS.gene57866:CDS | 20.0% |
| !! | CTAGTTTAGAAAATTTACTT+TGG | - | chr5.2:68276227-68276246 | MS.gene57866:intron | 20.0% |
| !! | TAAATATGATCCAAAAATGT+TGG | - | chr5.2:68275159-68275178 | MS.gene57866:intron | 20.0% |
| !! | TAAATGATTTGATGTGATAA+TGG | + | chr5.2:68275646-68275665 | None:intergenic | 20.0% |
| !! | TTAAAAAAGCAGTTAAACTT+GGG | - | chr5.2:68277157-68277176 | MS.gene57866:CDS | 20.0% |
| !!! | ACATTTCCCAATTTTAAATT+AGG | + | chr5.2:68276175-68276194 | None:intergenic | 20.0% |
| !!! | CATTTCCCAATTTTAAATTA+GGG | + | chr5.2:68276174-68276193 | None:intergenic | 20.0% |
| !!! | GTTAAACCCTAATTTAAAAT+TGG | - | chr5.2:68276165-68276184 | MS.gene57866:intron | 20.0% |
| !!! | TGTTTTAAAGATCAGTTTTA+AGG | - | chr5.2:68275331-68275350 | MS.gene57866:intron | 20.0% |
| !!! | TTCCTTTATTGTTTTTAACA+AGG | + | chr5.2:68277064-68277083 | None:intergenic | 20.0% |
| !!! | TTTCCTTTTTTGCTTATTTA+CGG | - | chr5.2:68274797-68274816 | MS.gene57866:intron | 20.0% |
| !!! | TTTTGGATCATATTTATCAA+GGG | + | chr5.2:68275155-68275174 | None:intergenic | 20.0% |
| !!! | TTTTTGGATCATATTTATCA+AGG | + | chr5.2:68275156-68275175 | None:intergenic | 20.0% |
| ! | AAACCGTAAATAAGCAAAAA+AGG | + | chr5.2:68274803-68274822 | None:intergenic | 25.0% |
| ! | AAATGACACTAAAGTTTCAT+AGG | + | chr5.2:68276435-68276454 | None:intergenic | 25.0% |
| ! | AACATATTCTATAGCTATAC+AGG | + | chr5.2:68275847-68275866 | None:intergenic | 25.0% |
| ! | AATATGATCCAAAAATGTTG+GGG | - | chr5.2:68275161-68275180 | MS.gene57866:intron | 25.0% |
| ! | ACATATTCTATAGCTATACA+GGG | + | chr5.2:68275846-68275865 | None:intergenic | 25.0% |
| ! | ATCATTCTAGTATTAAGAGT+AGG | - | chr5.2:68276005-68276024 | MS.gene57866:intron | 25.0% |
| ! | CTTGCATCCTTATTAATTAA+GGG | + | chr5.2:68276888-68276907 | None:intergenic | 25.0% |
| ! | TAAAATTCGTGAATTTGACA+AGG | + | chr5.2:68276387-68276406 | None:intergenic | 25.0% |
| ! | TATTATCATACCACAAAATG+AGG | + | chr5.2:68276796-68276815 | None:intergenic | 25.0% |
| ! | TTGCATCCTTATTAATTAAG+GGG | + | chr5.2:68276887-68276906 | None:intergenic | 25.0% |
| !! | AAAAACAATAAAGGAAGCAT+CGG | - | chr5.2:68277068-68277087 | MS.gene57866:intron | 25.0% |
| !! | CGATTTAAGACTTACAAAAT+GGG | + | chr5.2:68276994-68277013 | None:intergenic | 25.0% |
| !! | CTTTGGAAAATGATGAAAAT+TGG | - | chr5.2:68276244-68276263 | MS.gene57866:intron | 25.0% |
| !! | GACACCAAAAACATTAATTT+TGG | + | chr5.2:68277022-68277041 | None:intergenic | 25.0% |
| !! | TTTTATTGAAATTCGGTATC+TGG | + | chr5.2:68275269-68275288 | None:intergenic | 25.0% |
| !!! | ACTCTTTTTTTTTTTGGAAG+AGG | + | chr5.2:68276038-68276057 | None:intergenic | 25.0% |
| !!! | AGCCTTGTTAAAAACAATAA+AGG | - | chr5.2:68277059-68277078 | MS.gene57866:intron | 25.0% |
| !!! | AGGCTTACTCTTTTTTTTTT+TGG | + | chr5.2:68276044-68276063 | None:intergenic | 25.0% |
| !!! | AGTTTTTAGTAAATAGCTCA+TGG | - | chr5.2:68274686-68274705 | MS.gene57866:CDS | 25.0% |
| !!! | ATCGTCTAATTTTTAACTCA+AGG | - | chr5.2:68275668-68275687 | MS.gene57866:intron | 25.0% |
| !!! | ATCTTGGTGACATAATTTTT+TGG | + | chr5.2:68275805-68275824 | None:intergenic | 25.0% |
| !!! | CTCTTTTTTTTTTTGGAAGA+GGG | + | chr5.2:68276037-68276056 | None:intergenic | 25.0% |
| !!! | GTTTTTAGTAAATAGCTCAT+GGG | - | chr5.2:68274687-68274706 | MS.gene57866:CDS | 25.0% |
| !!! | TACTAAAAACTCTTGCTTTT+CGG | + | chr5.2:68274677-68274696 | None:intergenic | 25.0% |
| !!! | TCTTGGTGACATAATTTTTT+GGG | + | chr5.2:68275804-68275823 | None:intergenic | 25.0% |
| !!! | TTAAAGATCAGTTTTAAGGA+CGG | - | chr5.2:68275335-68275354 | MS.gene57866:intron | 25.0% |
| AACTATTCCTCTGAATGATA+AGG | - | chr5.2:68276089-68276108 | MS.gene57866:intron | 30.0% | |
| ATCATTCAGAGGAATAGTTT+AGG | + | chr5.2:68276088-68276107 | None:intergenic | 30.0% | |
| CCTTAATTAATAAGGATGCA+AGG | - | chr5.2:68276886-68276905 | MS.gene57866:CDS | 30.0% | |
| CCTTGCATCCTTATTAATTA+AGG | + | chr5.2:68276889-68276908 | None:intergenic | 30.0% | |
| CGAAGAATTAAATACTGCTT+GGG | - | chr5.2:68277104-68277123 | MS.gene57866:CDS | 30.0% | |
| GTGTTTCAATTGTATGAACT+GGG | + | chr5.2:68275914-68275933 | None:intergenic | 30.0% | |
| TATTCTTCATTCACAGTCTA+TGG | - | chr5.2:68275022-68275041 | MS.gene57866:intron | 30.0% | |
| TCATTCAGAGGAATAGTTTA+GGG | + | chr5.2:68276087-68276106 | None:intergenic | 30.0% | |
| TGTGTTTCAATTGTATGAAC+TGG | + | chr5.2:68275915-68275934 | None:intergenic | 30.0% | |
| TGTTTCAATTGTATGAACTG+GGG | + | chr5.2:68275913-68275932 | None:intergenic | 30.0% | |
| TTCATACAATTGAAACACAG+AGG | - | chr5.2:68275916-68275935 | MS.gene57866:intron | 30.0% | |
| ! | ATAAACTACCCCAACATTTT+TGG | + | chr5.2:68275172-68275191 | None:intergenic | 30.0% |
| ! | ATATTGTGATTGCGCAATTT+TGG | + | chr5.2:68276564-68276583 | None:intergenic | 30.0% |
| ! | CTCTCACAATTGTAAAGTTT+TGG | + | chr5.2:68275945-68275964 | None:intergenic | 30.0% |
| ! | GACAAGGAGTGAAATTTTAA+AGG | + | chr5.2:68276371-68276390 | None:intergenic | 30.0% |
| ! | GCGATTTAAGACTTACAAAA+TGG | + | chr5.2:68276995-68277014 | None:intergenic | 30.0% |
| ! | GTGTGTCAAAAGTGTATATA+AGG | + | chr5.2:68276064-68276083 | None:intergenic | 30.0% |
| !! | AAAACAATAAAGGAAGCATC+GGG | - | chr5.2:68277069-68277088 | MS.gene57866:intron | 30.0% |
| !! | ACATGGTTTTGCTTTCAATT+GGG | - | chr5.2:68275192-68275211 | MS.gene57866:intron | 30.0% |
| !! | TACATGGTTTTGCTTTCAAT+TGG | - | chr5.2:68275191-68275210 | MS.gene57866:intron | 30.0% |
| !!! | CTTTGGCGTAAAAGTATTTT+TGG | + | chr5.2:68276595-68276614 | None:intergenic | 30.0% |
| !!! | CTTTTGAGTTTCTCTAACTT+TGG | + | chr5.2:68276137-68276156 | None:intergenic | 30.0% |
| AAATGTTAACTAGTGCTCCA+GGG | - | chr5.2:68276189-68276208 | MS.gene57866:intron | 35.0% | |
| AACTTTCTTAACTAGTGTCC+CGG | - | chr5.2:68276326-68276345 | MS.gene57866:intron | 35.0% | |
| ACTCAAGGAGTCTATATACA+TGG | - | chr5.2:68275683-68275702 | MS.gene57866:intron | 35.0% | |
| ATGGGTCCCCTTAATTAATA+AGG | - | chr5.2:68276878-68276897 | MS.gene57866:CDS | 35.0% | |
| ATGTCACCAAGATACTTCTT+TGG | - | chr5.2:68275812-68275831 | MS.gene57866:intron | 35.0% | |
| ATGTTGGGGTAGTTTATACA+TGG | - | chr5.2:68275175-68275194 | MS.gene57866:intron | 35.0% | |
| CACAAGTAGCTCAAAATCAA+TGG | - | chr5.2:68276535-68276554 | MS.gene57866:intron | 35.0% | |
| CATTCAGAGGAATAGTTTAG+GGG | + | chr5.2:68276086-68276105 | None:intergenic | 35.0% | |
| GCGAAGAATTAAATACTGCT+TGG | - | chr5.2:68277103-68277122 | MS.gene57866:CDS | 35.0% | |
| GGAAATTGCTTACGATGAAT+TGG | - | chr5.2:68277125-68277144 | MS.gene57866:CDS | 35.0% | |
| GTAGAACAAAACACTATAGC+CGG | + | chr5.2:68274734-68274753 | None:intergenic | 35.0% | |
| GTGTTGGGATATACTAAAGT+GGG | - | chr5.2:68276739-68276758 | MS.gene57866:intron | 35.0% | |
| TAATGTGGCTAAAGTAGTGT+AGG | - | chr5.2:68275746-68275765 | MS.gene57866:intron | 35.0% | |
| TAGAACAAAACACTATAGCC+GGG | + | chr5.2:68274733-68274752 | None:intergenic | 35.0% | |
| TCATTCAAACAAAACCTTCC+CGG | - | chr5.2:68274712-68274731 | MS.gene57866:CDS | 35.0% | |
| ! | AGTGTTGGGATATACTAAAG+TGG | - | chr5.2:68276738-68276757 | MS.gene57866:intron | 35.0% |
| ! | AGTTGTTGATCCTCATTTTG+TGG | - | chr5.2:68276783-68276802 | MS.gene57866:intron | 35.0% |
| ! | TTTTCTTAAGAATACGCCTG+AGG | - | chr5.2:68274919-68274938 | MS.gene57866:intron | 35.0% |
| !! | AAACAATAAAGGAAGCATCG+GGG | - | chr5.2:68277070-68277089 | MS.gene57866:intron | 35.0% |
| !! | TGCTGAAAAGGTGTTTCAAA+TGG | - | chr5.2:68274970-68274989 | MS.gene57866:intron | 35.0% |
| !!! | TAATGTTTTTGGTGTCTTGC+AGG | - | chr5.2:68277026-68277045 | MS.gene57866:intron | 35.0% |
| ACTTCAAGCTCATGCTGAAA+AGG | - | chr5.2:68274958-68274977 | MS.gene57866:intron | 40.0% | |
| ATATCCCAACACTACTTCTC+CGG | + | chr5.2:68276731-68276750 | None:intergenic | 40.0% | |
| GAAATGTTAACTAGTGCTCC+AGG | - | chr5.2:68276188-68276207 | MS.gene57866:intron | 40.0% | |
| GATGTCACCTTATCATTCAG+AGG | + | chr5.2:68276099-68276118 | None:intergenic | 40.0% | |
| TGTATTATAGGTGCGTGATG+CGG | - | chr5.2:68276687-68276706 | MS.gene57866:intron | 40.0% | |
| ! | TGAGGACTATCTTTTACCTC+AGG | + | chr5.2:68274938-68274957 | None:intergenic | 40.0% |
| !! | AACAATAAAGGAAGCATCGG+GGG | - | chr5.2:68277071-68277090 | MS.gene57866:intron | 40.0% |
| !! | ACACGACCAAAGAAGTATCT+TGG | + | chr5.2:68275821-68275840 | None:intergenic | 40.0% |
| ACAAAACACTATAGCCGGGA+AGG | + | chr5.2:68274729-68274748 | None:intergenic | 45.0% | |
| CAACAACTCCTCTTTGGATG+TGG | + | chr5.2:68276771-68276790 | None:intergenic | 45.0% | |
| GAGGATCAACAACTCCTCTT+TGG | + | chr5.2:68276777-68276796 | None:intergenic | 45.0% | |
| GCCAGTTTCACAAGCTAATG+TGG | - | chr5.2:68275731-68275750 | MS.gene57866:intron | 45.0% | |
| TCAGCATGAGCTTGAAGTTG+AGG | + | chr5.2:68274956-68274975 | None:intergenic | 45.0% | |
| TTTCTTAACTAGTGTCCCGG+AGG | - | chr5.2:68276329-68276348 | MS.gene57866:intron | 45.0% | |
| !! | GCCACATTAGCTTGTGAAAC+TGG | + | chr5.2:68275735-68275754 | None:intergenic | 45.0% |
| !!! | TGTTTTTGGTGTCTTGCAGG+TGG | - | chr5.2:68277029-68277048 | MS.gene57866:intron | 45.0% |
| !! | ATAAAAAAATTAATTGATAT+TGG | + | chr5.2:68275005-68275024 | None:intergenic | 5.0% |
| AGCAACCGGAGAAGTAGTGT+TGG | - | chr5.2:68276723-68276742 | MS.gene57866:intron | 50.0% | |
| ATCGTGTTAACCAGTGCCTC+CGG | + | chr5.2:68276348-68276367 | None:intergenic | 50.0% | |
| GCAACCGGAGAAGTAGTGTT+GGG | - | chr5.2:68276724-68276743 | MS.gene57866:intron | 50.0% | |
| GCTGTTCAACTTCGAGCAAC+CGG | - | chr5.2:68276709-68276728 | MS.gene57866:intron | 50.0% | |
| ! | GGTGCTATCCACATCCAAAG+AGG | - | chr5.2:68276760-68276779 | MS.gene57866:intron | 50.0% |
| !! | AGAGAAAGCACCTGCAGCAA+AGG | - | chr5.2:68274886-68274905 | MS.gene57866:intron | 50.0% |
| !! | GAGAAAGCACCTGCAGCAAA+GGG | - | chr5.2:68274887-68274906 | MS.gene57866:intron | 50.0% |
| AGTCTCCTCAACTAGTGCCC+TGG | + | chr5.2:68276209-68276228 | None:intergenic | 55.0% | |
| GAGAACATGCCCTTTGCTGC+AGG | + | chr5.2:68274899-68274918 | None:intergenic | 55.0% | |
| TCGTGTTAACCAGTGCCTCC+GGG | + | chr5.2:68276347-68276366 | None:intergenic | 55.0% | |
| ! | AACTAGTGTCCCGGAGGCAC+TGG | - | chr5.2:68276335-68276354 | MS.gene57866:intron | 60.0% |
| ! | GTGCTCCAGGGCACTAGTTG+AGG | - | chr5.2:68276201-68276220 | MS.gene57866:intron | 60.0% |
| !! | AGGAAGCATCGGGGGACAAC+TGG | - | chr5.2:68277079-68277098 | MS.gene57866:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.2 | gene | 68274664 | 68277194 | 68274664 | ID=MS.gene57866 |
| chr5.2 | mRNA | 68274664 | 68277194 | 68274664 | ID=MS.gene57866.t1;Parent=MS.gene57866 |
| chr5.2 | exon | 68277100 | 68277194 | 68277100 | ID=MS.gene57866.t1.exon1;Parent=MS.gene57866.t1 |
| chr5.2 | CDS | 68277100 | 68277194 | 68277100 | ID=cds.MS.gene57866.t1;Parent=MS.gene57866.t1 |
| chr5.2 | exon | 68276867 | 68276978 | 68276867 | ID=MS.gene57866.t1.exon2;Parent=MS.gene57866.t1 |
| chr5.2 | CDS | 68276867 | 68276978 | 68276867 | ID=cds.MS.gene57866.t1;Parent=MS.gene57866.t1 |
| chr5.2 | exon | 68275054 | 68275161 | 68275054 | ID=MS.gene57866.t1.exon3;Parent=MS.gene57866.t1 |
| chr5.2 | CDS | 68275054 | 68275161 | 68275054 | ID=cds.MS.gene57866.t1;Parent=MS.gene57866.t1 |
| chr5.2 | exon | 68274664 | 68274810 | 68274664 | ID=MS.gene57866.t1.exon4;Parent=MS.gene57866.t1 |
| chr5.2 | CDS | 68274664 | 68274810 | 68274664 | ID=cds.MS.gene57866.t1;Parent=MS.gene57866.t1 |
| Gene Sequence |
| Protein sequence |
