Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57958.t1 | XP_024638184.1 | 100 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 5.10E-41 | 176.4 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57958.t1 | Q945L0 | 86.7 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.7e-37 | 156.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57958.t1 | A0A396IJH6 | 100.0 | 77 | 0 | 0 | 1 | 77 | 1 | 77 | 3.7e-41 | 176.4 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057237 | MS.gene57958 | 0.810714 | 1.00E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57958.t1 | MTR_4g129710 | 100.000 | 74 | 0 | 0 | 4 | 77 | 9 | 82 | 1.81e-53 | 160 |
| MS.gene57958.t1 | MTR_5g064600 | 81.333 | 75 | 14 | 0 | 3 | 77 | 109 | 183 | 2.36e-47 | 148 |
| MS.gene57958.t1 | MTR_5g013865 | 43.478 | 69 | 38 | 1 | 7 | 74 | 62 | 130 | 1.18e-19 | 76.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57958.t1 | AT4G28060 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.10e-47 | 145 |
| MS.gene57958.t1 | AT5G57815 | 86.667 | 75 | 10 | 0 | 3 | 77 | 4 | 78 | 1.58e-47 | 145 |
| MS.gene57958.t1 | AT1G22450 | 77.333 | 75 | 17 | 0 | 3 | 77 | 116 | 190 | 1.48e-45 | 144 |
| MS.gene57958.t1 | AT1G32710 | 45.455 | 55 | 30 | 0 | 9 | 63 | 59 | 113 | 3.26e-15 | 65.5 |
Find 23 sgRNAs with CRISPR-Local
Find 173 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TACAGGTGCATGACAGTAAA+AGG | 0.296713 | 8.4:+5143815 | MS.gene57958:intron |
| GTTCTCTTTGCCCCGGTGAA+TGG | 0.301610 | 8.4:+5143879 | MS.gene57958:CDS |
| GCAAAGAGAACGGTAGTATT+TGG | 0.308371 | 8.4:-5143867 | None:intergenic |
| TTCTCTTTGCCCCGGTGAAT+GGG | 0.347711 | 8.4:+5143880 | MS.gene57958:CDS |
| TGCCGGGTTTGATTAGTTGT+AGG | 0.456773 | 8.4:-5143687 | None:intergenic |
| CTCGCTACATAGAGTTTCAC+AGG | 0.490501 | 8.4:+5143718 | MS.gene57958:CDS |
| GTAGGAAAACGAAAATCAAC+AGG | 0.493074 | 8.4:-5143669 | None:intergenic |
| ACATGCTTTCAAAGAGGTCC+TGG | 0.510554 | 8.4:-5145082 | None:intergenic |
| AGGGATGCTTACCCATTCAC+CGG | 0.515653 | 8.4:-5143891 | None:intergenic |
| TACTACCGTTCTCTTTGCCC+CGG | 0.531700 | 8.4:+5143872 | MS.gene57958:CDS |
| GTCTGTCTCACTCATGGCGG+AGG | 0.557442 | 8.4:+5142158 | None:intergenic |
| TGTAGCGAGTGAAACAGTGC+CGG | 0.576683 | 8.4:-5143704 | None:intergenic |
| AATTATTGCAGGTTGACAAG+TGG | 0.580545 | 8.4:+5145032 | MS.gene57958:intron |
| GTAGCGAGTGAAACAGTGCC+GGG | 0.582425 | 8.4:-5143703 | None:intergenic |
| GGGATGCTTACCCATTCACC+GGG | 0.582773 | 8.4:-5143890 | None:intergenic |
| ATTCACCGGGGCAAAGAGAA+CGG | 0.617282 | 8.4:-5143877 | None:intergenic |
| AAACACACATGCTTTCAAAG+AGG | 0.618056 | 8.4:-5145088 | None:intergenic |
| TGGAATGAACAGAGGGACAA+TGG | 0.619086 | 8.4:+5145052 | MS.gene57958:CDS |
| TTCCTACAACTAATCAAACC+CGG | 0.624103 | 8.4:+5143685 | MS.gene57958:CDS |
| TGACAAGTGGAATGAACAGA+GGG | 0.629992 | 8.4:+5145045 | MS.gene57958:CDS |
| ACAGTAAAAGGTGAAAACTC+AGG | 0.633665 | 8.4:+5143827 | MS.gene57958:CDS |
| TTGACAAGTGGAATGAACAG+AGG | 0.706038 | 8.4:+5145044 | MS.gene57958:CDS |
| GGATGCTTACCCATTCACCG+GGG | 0.811773 | 8.4:-5143889 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATTTGAATAAGATAAAT+TGG | + | chr8.4:5144599-5144618 | MS.gene57958:intron | 10.0% |
| !! | ATTAAAATTAAAACACAAAT+GGG | - | chr8.4:5143561-5143580 | None:intergenic | 10.0% |
| !! | TGAAATTAAAAATGAATATT+GGG | - | chr8.4:5142202-5142221 | None:intergenic | 10.0% |
| !! | TTGAAATTAAAAATGAATAT+TGG | - | chr8.4:5142203-5142222 | None:intergenic | 10.0% |
| !!! | TTTTAGCTTATATTAATTAA+GGG | - | chr8.4:5142832-5142851 | None:intergenic | 10.0% |
| !!! | TTTTTAGCTTATATTAATTA+AGG | - | chr8.4:5142833-5142852 | None:intergenic | 10.0% |
| !! | AAGCTAAAAATACATATATT+TGG | + | chr8.4:5142743-5142762 | MS.gene57958:intron | 15.0% |
| !! | AGTAAATATATTGAATCTTA+TGG | - | chr8.4:5144330-5144349 | None:intergenic | 15.0% |
| !! | CATTAAAATTAAAACACAAA+TGG | - | chr8.4:5143562-5143581 | None:intergenic | 15.0% |
| !! | TAGATTTAAGAATTTACAAT+CGG | - | chr8.4:5142924-5142943 | None:intergenic | 15.0% |
| !! | TTGTAAATTCTTAAATCTAT+TGG | + | chr8.4:5142925-5142944 | MS.gene57958:intron | 15.0% |
| !!! | TTCATTATAATATTTTGCAA+CGG | - | chr8.4:5144964-5144983 | None:intergenic | 15.0% |
| !!! | TTTAGCTTATATTAATTAAG+GGG | - | chr8.4:5142831-5142850 | None:intergenic | 15.0% |
| !! | AAATATATTGAATCTTATGG+AGG | - | chr8.4:5144327-5144346 | None:intergenic | 20.0% |
| !! | ACAAGATATAAAGATATATG+TGG | - | chr8.4:5143585-5143604 | None:intergenic | 20.0% |
| !! | CTACCATTAAATTAAATTGT+TGG | - | chr8.4:5143035-5143054 | None:intergenic | 20.0% |
| !! | TAACATCAATCTTTACATTA+AGG | - | chr8.4:5143984-5144003 | None:intergenic | 20.0% |
| !! | TACTCTTAAACTAATCTTTA+GGG | + | chr8.4:5142677-5142696 | MS.gene57958:intron | 20.0% |
| !! | TATAAAGAAAATAACCATTG+TGG | - | chr8.4:5143205-5143224 | None:intergenic | 20.0% |
| !! | TTACTCTTAAACTAATCTTT+AGG | + | chr8.4:5142676-5142695 | MS.gene57958:intron | 20.0% |
| !! | TTGACAATTTCAAAACTATA+AGG | + | chr8.4:5142956-5142975 | MS.gene57958:intron | 20.0% |
| !! | TTTACATTAAGGTAAATTTG+CGG | - | chr8.4:5143973-5143992 | None:intergenic | 20.0% |
| !!! | AAATTTTAAATAGCGAAACA+CGG | - | chr8.4:5145000-5145019 | None:intergenic | 20.0% |
| !!! | AGTTTTAAACATTTAAGAAC+TGG | + | chr8.4:5144066-5144085 | MS.gene57958:intron | 20.0% |
| !!! | TTTTGTGATAACAAAGATAT+AGG | - | chr8.4:5143261-5143280 | None:intergenic | 20.0% |
| ! | AAAAAATAAATTAATCCCCG+AGG | - | chr8.4:5143171-5143190 | None:intergenic | 25.0% |
| ! | AAAAAGTTGAGAATTGAACT+GGG | - | chr8.4:5144126-5144145 | None:intergenic | 25.0% |
| ! | AAAAATACAGACATCGAAAT+TGG | - | chr8.4:5144715-5144734 | None:intergenic | 25.0% |
| ! | AATTACTGAAAAGCGAAAAA+AGG | - | chr8.4:5142234-5142253 | None:intergenic | 25.0% |
| ! | AGAAATGATATCGTTGAATA+GGG | - | chr8.4:5142802-5142821 | None:intergenic | 25.0% |
| ! | AGCACACTATAAAATGATTA+TGG | - | chr8.4:5143115-5143134 | None:intergenic | 25.0% |
| ! | ATATGTAAATTGTGTCATAG+AGG | - | chr8.4:5143391-5143410 | None:intergenic | 25.0% |
| ! | ATCATAGTTACAATTTACCA+AGG | - | chr8.4:5144678-5144697 | None:intergenic | 25.0% |
| ! | ATGTCTAGAGATTAATTAGA+AGG | - | chr8.4:5144808-5144827 | None:intergenic | 25.0% |
| ! | ATTCATTGCTTAAAACTACA+TGG | + | chr8.4:5143489-5143508 | MS.gene57958:intron | 25.0% |
| ! | CAATTAGTACTACTACATAA+GGG | - | chr8.4:5144163-5144182 | None:intergenic | 25.0% |
| ! | TAAAAAGTTGAGAATTGAAC+TGG | - | chr8.4:5144127-5144146 | None:intergenic | 25.0% |
| ! | TAAGCAATGTTATTAGATAC+AGG | - | chr8.4:5142538-5142557 | None:intergenic | 25.0% |
| ! | TATGTAAATTGTGTCATAGA+GGG | - | chr8.4:5143390-5143409 | None:intergenic | 25.0% |
| ! | TATTCTAGTACATCGTTTAA+TGG | + | chr8.4:5144213-5144232 | MS.gene57958:intron | 25.0% |
| ! | TCAATTAGTACTACTACATA+AGG | - | chr8.4:5144164-5144183 | None:intergenic | 25.0% |
| ! | TCTAACCTTTACAATTTCAA+GGG | + | chr8.4:5142641-5142660 | MS.gene57958:intron | 25.0% |
| ! | TGCTAATGAAACAAAGTTAA+GGG | - | chr8.4:5143913-5143932 | None:intergenic | 25.0% |
| ! | TGTCTAGAGATTAATTAGAA+GGG | - | chr8.4:5144807-5144826 | None:intergenic | 25.0% |
| ! | TTAATCGTGACTTTAATTAC+AGG | + | chr8.4:5143798-5143817 | MS.gene57958:intron | 25.0% |
| ! | TTCATTGAAGATAAATGTCT+AGG | - | chr8.4:5144507-5144526 | None:intergenic | 25.0% |
| ! | TTGCTAATGAAACAAAGTTA+AGG | - | chr8.4:5143914-5143933 | None:intergenic | 25.0% |
| ! | TTGCTTATTGTCAAATTAGA+AGG | + | chr8.4:5142551-5142570 | MS.gene57958:intron | 25.0% |
| ! | TTTGTGACAAATTTGAATTC+TGG | + | chr8.4:5144922-5144941 | MS.gene57958:intron | 25.0% |
| !! | AATGGTAGTTTTTGTTAGTA+TGG | + | chr8.4:5143047-5143066 | MS.gene57958:intron | 25.0% |
| !! | ATAATCATTTTATAGTGTGC+TGG | + | chr8.4:5143114-5143133 | MS.gene57958:intron | 25.0% |
| !! | CAATTTTCTTTGTTGACAAA+TGG | + | chr8.4:5144420-5144439 | MS.gene57958:intron | 25.0% |
| !! | CTTAAATGTTTAAAACTAGC+TGG | - | chr8.4:5144063-5144082 | None:intergenic | 25.0% |
| !! | TCGCCAACAATTTAATTTAA+TGG | + | chr8.4:5143029-5143048 | MS.gene57958:intron | 25.0% |
| !! | TGAAAATCCAAAAAGTACAA+GGG | - | chr8.4:5142703-5142722 | None:intergenic | 25.0% |
| !! | TGTTTGCTGATATATTATTC+TGG | + | chr8.4:5144254-5144273 | MS.gene57958:intron | 25.0% |
| !! | TTCTCAACTTTTTATGCATT+TGG | + | chr8.4:5144133-5144152 | MS.gene57958:intron | 25.0% |
| !! | TTGAAAATCCAAAAAGTACA+AGG | - | chr8.4:5142704-5142723 | None:intergenic | 25.0% |
| !! | TTTTAAATTAATGTCGTTGC+TGG | + | chr8.4:5142418-5142437 | MS.gene57958:intron | 25.0% |
| !!! | AGTATTGACTAGAATAATGA+TGG | + | chr8.4:5144463-5144482 | MS.gene57958:intron | 25.0% |
| !!! | CATCTTTGAAATATGCAAAT+AGG | - | chr8.4:5142615-5142634 | None:intergenic | 25.0% |
| !!! | CTGATATATTATTCTGGTTT+TGG | + | chr8.4:5144260-5144279 | MS.gene57958:intron | 25.0% |
| !!! | CTGTATTTTTTGTTAGGATT+AGG | + | chr8.4:5144725-5144744 | MS.gene57958:intron | 25.0% |
| !!! | GTTTAATGGAAGTTATTTTC+TGG | + | chr8.4:5144227-5144246 | MS.gene57958:intron | 25.0% |
| !!! | TCTTTAGGATTTTACATGTT+AGG | + | chr8.4:5144397-5144416 | MS.gene57958:intron | 25.0% |
| AAACTAGAACCAACATTAGA+CGG | - | chr8.4:5143349-5143368 | None:intergenic | 30.0% | |
| AAGCAACACAATATTAAGTC+AGG | - | chr8.4:5143622-5143641 | None:intergenic | 30.0% | |
| AGAATTACATGCAATCTTAC+AGG | - | chr8.4:5142361-5142380 | None:intergenic | 30.0% | |
| AGATTAATTTCAAGCAACCA+TGG | - | chr8.4:5144548-5144567 | None:intergenic | 30.0% | |
| ATAAAGGGCTAACAGATAAA+TGG | - | chr8.4:5144298-5144317 | None:intergenic | 30.0% | |
| ATTACCCCTTGAAATTGTAA+AGG | - | chr8.4:5142649-5142668 | None:intergenic | 30.0% | |
| ATTAGATACAGGTTAGTAGA+AGG | - | chr8.4:5142527-5142546 | None:intergenic | 30.0% | |
| CAGAAATGATATCGTTGAAT+AGG | - | chr8.4:5142803-5142822 | None:intergenic | 30.0% | |
| CTAACCTTTACAATTTCAAG+GGG | + | chr8.4:5142642-5142661 | MS.gene57958:intron | 30.0% | |
| CTCCACATAATTCAAAATCA+GGG | - | chr8.4:5142495-5142514 | None:intergenic | 30.0% | |
| CTCTACTTAATCAAACCAAA+AGG | + | chr8.4:5143076-5143095 | MS.gene57958:intron | 30.0% | |
| CTTATTATCTCCATGACTAA+TGG | + | chr8.4:5144348-5144367 | MS.gene57958:intron | 30.0% | |
| GAATATGCAAAAGCGAAAAT+GGG | - | chr8.4:5142268-5142287 | None:intergenic | 30.0% | |
| GTCTAACCTTTACAATTTCA+AGG | + | chr8.4:5142640-5142659 | MS.gene57958:intron | 30.0% | |
| GTGAAACTTAATGCGATTTA+TGG | + | chr8.4:5144004-5144023 | MS.gene57958:intron | 30.0% | |
| TCACAAAATTTGACCTAAGT+TGG | - | chr8.4:5144909-5144928 | None:intergenic | 30.0% | |
| TCTTAACTTACTGGATTACT+TGG | + | chr8.4:5143937-5143956 | MS.gene57958:intron | 30.0% | |
| TGAAGATAAATGTCTAGGAA+GGG | - | chr8.4:5144502-5144521 | None:intergenic | 30.0% | |
| TGAATATGCAAAAGCGAAAA+TGG | - | chr8.4:5142269-5142288 | None:intergenic | 30.0% | |
| TGTTTGATGCAAATTATTGC+AGG | + | chr8.4:5145021-5145040 | MS.gene57958:intron | 30.0% | |
| TTAATCTTCATGCTTTGTAC+TGG | + | chr8.4:5144561-5144580 | MS.gene57958:intron | 30.0% | |
| TTACAATTTCAAGGGGTAAT+TGG | + | chr8.4:5142649-5142668 | MS.gene57958:intron | 30.0% | |
| TTATGGAGGTTTGACATAAA+GGG | - | chr8.4:5144313-5144332 | None:intergenic | 30.0% | |
| TTGAAGATAAATGTCTAGGA+AGG | - | chr8.4:5144503-5144522 | None:intergenic | 30.0% | |
| TTTAATGACGTCAAGCAAAT+TGG | - | chr8.4:5142578-5142597 | None:intergenic | 30.0% | |
| ! | AAATGTTTAAAACTAGCTGG+TGG | - | chr8.4:5144060-5144079 | None:intergenic | 30.0% |
| ! | TTACGTTTTCTTCGTTCTTA+TGG | + | chr8.4:5143442-5143461 | MS.gene57958:intron | 30.0% |
| !! | TTTGAATATTGACTCCACAA+TGG | + | chr8.4:5143188-5143207 | MS.gene57958:intron | 30.0% |
| !!! | CGATGTCTGTATTTTTTGTT+AGG | + | chr8.4:5144719-5144738 | MS.gene57958:intron | 30.0% |
| !!! | TTTTAGCTTATATTCGAGAC+TGG | - | chr8.4:5142732-5142751 | None:intergenic | 30.0% |
| ACAGTAAAAGGTGAAAACTC+AGG | + | chr8.4:5143827-5143846 | MS.gene57958:CDS | 35.0% | |
| ACTTACTGGATTACTTGGTT+CGG | + | chr8.4:5143942-5143961 | MS.gene57958:intron | 35.0% | |
| ATAATCAGTCCTCTAATGGT+AGG | + | chr8.4:5142895-5142914 | MS.gene57958:intron | 35.0% | |
| ATTTACCAAGGACTGATGTA+TGG | - | chr8.4:5144666-5144685 | None:intergenic | 35.0% | |
| CAGGAAGGAAAAATAGTCAA+AGG | - | chr8.4:5142342-5142361 | None:intergenic | 35.0% | |
| CCATTAGAGGACTGATTATA+AGG | - | chr8.4:5142894-5142913 | None:intergenic | 35.0% | |
| CCTTATAATCAGTCCTCTAA+TGG | + | chr8.4:5142891-5142910 | MS.gene57958:intron | 35.0% | |
| CTAGAGATTAATTAGAAGGG+CGG | - | chr8.4:5144804-5144823 | None:intergenic | 35.0% | |
| CTTATGGAGGTTTGACATAA+AGG | - | chr8.4:5144314-5144333 | None:intergenic | 35.0% | |
| GCTCCACATAATTCAAAATC+AGG | - | chr8.4:5142496-5142515 | None:intergenic | 35.0% | |
| GTAGGAAAACGAAAATCAAC+AGG | - | chr8.4:5143672-5143691 | None:intergenic | 35.0% | |
| TAATCAGTCCTCTAATGGTA+GGG | + | chr8.4:5142896-5142915 | MS.gene57958:intron | 35.0% | |
| TAGACGACATACATAAGACA+CGG | - | chr8.4:5144375-5144394 | None:intergenic | 35.0% | |
| TAGCAAGCTTCTTAACTTAC+TGG | + | chr8.4:5143928-5143947 | MS.gene57958:intron | 35.0% | |
| TATAAGGACCTTAGTTTCAG+TGG | + | chr8.4:5142972-5142991 | MS.gene57958:intron | 35.0% | |
| TGAACATCCCACAAAATGAA+AGG | + | chr8.4:5143004-5143023 | MS.gene57958:intron | 35.0% | |
| TTAAGTTAGCCGTCTAATGT+TGG | + | chr8.4:5143337-5143356 | MS.gene57958:intron | 35.0% | |
| TTACATGCAATCTTACAGGA+AGG | - | chr8.4:5142357-5142376 | None:intergenic | 35.0% | |
| TTCCTACAACTAATCAAACC+CGG | + | chr8.4:5143685-5143704 | MS.gene57958:CDS | 35.0% | |
| TTTACCAAGGACTGATGTAT+GGG | - | chr8.4:5144665-5144684 | None:intergenic | 35.0% | |
| ! | AAGGACGCAAAAAAGTACAA+GGG | - | chr8.4:5142875-5142894 | None:intergenic | 35.0% |
| ! | AATTATTGCAGGTTGACAAG+TGG | + | chr8.4:5145032-5145051 | MS.gene57958:intron | 35.0% |
| ! | AGCCCTGATTTTGAATTATG+TGG | + | chr8.4:5142490-5142509 | MS.gene57958:intron | 35.0% |
| ! | AGTTTTGCAAAGACCAACTT+AGG | + | chr8.4:5144893-5144912 | MS.gene57958:intron | 35.0% |
| ! | ATCATTTTATAGTGTGCTGG+TGG | + | chr8.4:5143117-5143136 | MS.gene57958:intron | 35.0% |
| ! | ATTAGGCTAGTGAATTTGCT+TGG | + | chr8.4:5144742-5144761 | MS.gene57958:intron | 35.0% |
| ! | GGCTATTAATTCAGACCTTT+TGG | - | chr8.4:5143094-5143113 | None:intergenic | 35.0% |
| ! | TAAGGACGCAAAAAAGTACA+AGG | - | chr8.4:5142876-5142895 | None:intergenic | 35.0% |
| ! | TGAATATTGGGTTGTGATTC+AGG | - | chr8.4:5142190-5142209 | None:intergenic | 35.0% |
| ! | TTTAAAACTAGCTGGTGGAA+AGG | - | chr8.4:5144055-5144074 | None:intergenic | 35.0% |
| !! | AAGTTGGTCTTTGCAAAACT+GGG | - | chr8.4:5144893-5144912 | None:intergenic | 35.0% |
| !! | TAAGTTGGTCTTTGCAAAAC+TGG | - | chr8.4:5144894-5144913 | None:intergenic | 35.0% |
| !! | TGTATGTCGTCTAGTTCTTT+AGG | + | chr8.4:5144382-5144401 | MS.gene57958:intron | 35.0% |
| !!! | GTTTTTAGCTCAATCTGGAA+AGG | - | chr8.4:5143645-5143664 | None:intergenic | 35.0% |
| CGCTGTGATCAAATGTCAAA+AGG | - | chr8.4:5143315-5143334 | None:intergenic | 40.0% | |
| CTTACTGGATTACTTGGTTC+GGG | + | chr8.4:5143943-5143962 | MS.gene57958:intron | 40.0% | |
| GCAAAGAGAACGGTAGTATT+TGG | - | chr8.4:5143870-5143889 | None:intergenic | 40.0% | |
| GTAATCACTAGTGTCATGCA+TGG | - | chr8.4:5144850-5144869 | None:intergenic | 40.0% | |
| TAAGTCAGGAAAAAGACTGC+AGG | - | chr8.4:5143608-5143627 | None:intergenic | 40.0% | |
| TACAGGTGCATGACAGTAAA+AGG | + | chr8.4:5143815-5143834 | MS.gene57958:intron | 40.0% | |
| TCAATATGTCACAACTGCCT+CGG | + | chr8.4:5143151-5143170 | MS.gene57958:intron | 40.0% | |
| TGAACATATAGCCAAGAGTC+AGG | - | chr8.4:5143751-5143770 | None:intergenic | 40.0% | |
| TGACAAGTGGAATGAACAGA+GGG | + | chr8.4:5145045-5145064 | MS.gene57958:CDS | 40.0% | |
| TGCAAAAGCGAAAATGGGAA+AGG | - | chr8.4:5142263-5142282 | None:intergenic | 40.0% | |
| TTGAATTATGTGGAGCAGCT+TGG | + | chr8.4:5142500-5142519 | MS.gene57958:intron | 40.0% | |
| TTGACAAGTGGAATGAACAG+AGG | + | chr8.4:5145044-5145063 | MS.gene57958:CDS | 40.0% | |
| !! | TTAACTTGTTCCAAGAGCCA+TGG | + | chr8.4:5144528-5144547 | MS.gene57958:intron | 40.0% |
| !! | TTTAGGGCCCTTGTACTTTT+TGG | + | chr8.4:5142693-5142712 | MS.gene57958:intron | 40.0% |
| !! | TTTTATAGTGTGCTGGTGGA+CGG | + | chr8.4:5143121-5143140 | MS.gene57958:intron | 40.0% |
| !!! | GTGCTGTTTTTAGCTCAATC+TGG | - | chr8.4:5143650-5143669 | None:intergenic | 40.0% |
| AAGACACGGTCCATTAGTCA+TGG | - | chr8.4:5144361-5144380 | None:intergenic | 45.0% | |
| AAGGACCTTAGTTTCAGTGG+AGG | + | chr8.4:5142975-5142994 | MS.gene57958:intron | 45.0% | |
| AATATGTCACAACTGCCTCG+GGG | + | chr8.4:5143153-5143172 | MS.gene57958:intron | 45.0% | |
| AATCGGATCCCTACCATTAG+AGG | - | chr8.4:5142907-5142926 | None:intergenic | 45.0% | |
| ACAAGCCTCCACTGAAACTA+AGG | - | chr8.4:5142983-5143002 | None:intergenic | 45.0% | |
| CAATATGTCACAACTGCCTC+GGG | + | chr8.4:5143152-5143171 | MS.gene57958:intron | 45.0% | |
| CTCGCTACATAGAGTTTCAC+AGG | + | chr8.4:5143718-5143737 | MS.gene57958:CDS | 45.0% | |
| GCTACATAGAGTTTCACAGG+TGG | + | chr8.4:5143721-5143740 | MS.gene57958:intron | 45.0% | |
| TGGAATGAACAGAGGGACAA+TGG | + | chr8.4:5145052-5145071 | MS.gene57958:CDS | 45.0% | |
| TTTCAAGCAACCATGGCTCT+TGG | - | chr8.4:5144541-5144560 | None:intergenic | 45.0% | |
| ! | AGGGACAATGGTACTTTTCC+AGG | + | chr8.4:5145064-5145083 | MS.gene57958:CDS | 45.0% |
| ! | GGCGAGTCCTTTCATTTTGT+GGG | - | chr8.4:5143014-5143033 | None:intergenic | 45.0% |
| ! | TGCCGGGTTTGATTAGTTGT+AGG | - | chr8.4:5143690-5143709 | None:intergenic | 45.0% |
| ! | TGGCGAGTCCTTTCATTTTG+TGG | - | chr8.4:5143015-5143034 | None:intergenic | 45.0% |
| AGGGATGCTTACCCATTCAC+CGG | - | chr8.4:5143894-5143913 | None:intergenic | 50.0% | |
| ATTCACCGGGGCAAAGAGAA+CGG | - | chr8.4:5143880-5143899 | None:intergenic | 50.0% | |
| TACTACCGTTCTCTTTGCCC+CGG | + | chr8.4:5143872-5143891 | MS.gene57958:CDS | 50.0% | |
| TGTAGCGAGTGAAACAGTGC+CGG | - | chr8.4:5143707-5143726 | None:intergenic | 50.0% | |
| TGTCATGCATGGAGTCTGCT+GGG | - | chr8.4:5144839-5144858 | None:intergenic | 50.0% | |
| TGTGCCCATACATCAGTCCT+TGG | + | chr8.4:5144658-5144677 | MS.gene57958:intron | 50.0% | |
| TTCTCTTTGCCCCGGTGAAT+GGG | + | chr8.4:5143880-5143899 | MS.gene57958:CDS | 50.0% | |
| ! | CAGGTGGATTTCCTGACTCT+TGG | + | chr8.4:5143737-5143756 | MS.gene57958:intron | 50.0% |
| GGATGCTTACCCATTCACCG+GGG | - | chr8.4:5143892-5143911 | None:intergenic | 55.0% | |
| GGGATGCTTACCCATTCACC+GGG | - | chr8.4:5143893-5143912 | None:intergenic | 55.0% | |
| GTAGCGAGTGAAACAGTGCC+GGG | - | chr8.4:5143706-5143725 | None:intergenic | 55.0% | |
| GTGTCATGCATGGAGTCTGC+TGG | - | chr8.4:5144840-5144859 | None:intergenic | 55.0% | |
| GTTCTCTTTGCCCCGGTGAA+TGG | + | chr8.4:5143879-5143898 | MS.gene57958:CDS | 55.0% | |
| ! | TATAGTGTGCTGGTGGACGG+TGG | + | chr8.4:5143124-5143143 | MS.gene57958:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 5142171 | 5145096 | 5142171 | ID=MS.gene57958 |
| chr8.4 | mRNA | 5142171 | 5145096 | 5142171 | ID=MS.gene57958.t1;Parent=MS.gene57958 |
| chr8.4 | exon | 5142171 | 5142179 | 5142171 | ID=MS.gene57958.t1.exon1;Parent=MS.gene57958.t1 |
| chr8.4 | CDS | 5142171 | 5142179 | 5142171 | ID=cds.MS.gene57958.t1;Parent=MS.gene57958.t1 |
| chr8.4 | exon | 5143651 | 5143739 | 5143651 | ID=MS.gene57958.t1.exon2;Parent=MS.gene57958.t1 |
| chr8.4 | CDS | 5143651 | 5143739 | 5143651 | ID=cds.MS.gene57958.t1;Parent=MS.gene57958.t1 |
| chr8.4 | exon | 5143820 | 5143901 | 5143820 | ID=MS.gene57958.t1.exon3;Parent=MS.gene57958.t1 |
| chr8.4 | CDS | 5143820 | 5143901 | 5143820 | ID=cds.MS.gene57958.t1;Parent=MS.gene57958.t1 |
| chr8.4 | exon | 5145043 | 5145096 | 5145043 | ID=MS.gene57958.t1.exon4;Parent=MS.gene57958.t1 |
| chr8.4 | CDS | 5145043 | 5145096 | 5145043 | ID=cds.MS.gene57958.t1;Parent=MS.gene57958.t1 |
| Gene Sequence |
| Protein sequence |
