Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057237.t1 | XP_013464220.1 | 100 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 2.70E-27 | 131.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057237.t1 | P52855 | 68.3 | 63 | 20 | 0 | 1 | 63 | 1 | 63 | 6.7e-19 | 94.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057237.t1 | A0A072VJD3 | 100.0 | 64 | 0 | 0 | 1 | 64 | 1 | 64 | 1.9e-27 | 131.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene052666 | MS.gene057237 | 0.810432 | 1.16E-50 | -1.69E-46 |
MS.gene057237 | MS.gene057641 | 0.830262 | 3.24E-55 | -1.69E-46 |
MS.gene057237 | MS.gene057643 | 0.835429 | 1.69E-56 | -1.69E-46 |
MS.gene057237 | MS.gene060279 | 0.824753 | 6.80E-54 | -1.69E-46 |
MS.gene057237 | MS.gene060432 | 0.818535 | 1.86E-52 | -1.69E-46 |
MS.gene057237 | MS.gene064836 | 0.830962 | 2.19E-55 | -1.69E-46 |
MS.gene057237 | MS.gene06617 | 0.872844 | 2.33E-67 | -1.69E-46 |
MS.gene057237 | MS.gene06833 | 0.8723 | 3.54E-67 | -1.69E-46 |
MS.gene057237 | MS.gene21175 | 0.823349 | 1.45E-53 | -1.69E-46 |
MS.gene057237 | MS.gene50756 | 0.828379 | 9.29E-55 | -1.69E-46 |
MS.gene057237 | MS.gene50758 | 0.807648 | 4.56E-50 | -1.69E-46 |
MS.gene057237 | MS.gene52771 | 0.832763 | 7.85E-56 | -1.69E-46 |
MS.gene057237 | MS.gene57958 | 0.810714 | 1.00E-50 | -1.69E-46 |
MS.gene057237 | MS.gene58173 | 0.819394 | 1.19E-52 | -1.69E-46 |
MS.gene057237 | MS.gene69327 | 0.832238 | 1.06E-55 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene057237 | MS.gene35379 | PPI |
MS.gene057237 | MS.gene01952 | PPI |
MS.gene44900 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene047578 | PPI |
MS.gene82009 | MS.gene057237 | PPI |
MS.gene073078 | MS.gene057237 | PPI |
MS.gene009874 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene06617 | PPI |
MS.gene002442 | MS.gene057237 | PPI |
MS.gene060483 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene88792 | PPI |
MS.gene06617 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene01091 | PPI |
MS.gene08521 | MS.gene057237 | PPI |
MS.gene042719 | MS.gene057237 | PPI |
MS.gene013506 | MS.gene057237 | PPI |
MS.gene76615 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene045633 | PPI |
MS.gene88792 | MS.gene057237 | PPI |
MS.gene01952 | MS.gene057237 | PPI |
MS.gene43071 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene91826 | PPI |
MS.gene057237 | MS.gene78764 | PPI |
MS.gene057237 | MS.gene97876 | PPI |
MS.gene057237 | MS.gene053952 | PPI |
MS.gene06833 | MS.gene057237 | PPI |
MS.gene067331 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene01425 | PPI |
MS.gene045633 | MS.gene057237 | PPI |
MS.gene069339 | MS.gene057237 | PPI |
MS.gene057237 | MS.gene032942 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057237.t1 | MTR_3g092600 | 99.091 | 110 | 1 | 0 | 1 | 110 | 1 | 110 | 3.12e-74 | 215 |
MS.gene057237.t1 | MTR_2g066750 | 98.182 | 110 | 2 | 0 | 1 | 110 | 1 | 110 | 1.07e-73 | 214 |
MS.gene057237.t1 | MTR_8g024350 | 64.545 | 110 | 37 | 2 | 1 | 110 | 1 | 108 | 1.42e-33 | 112 |
MS.gene057237.t1 | MTR_7g118060 | 62.712 | 59 | 22 | 0 | 1 | 59 | 1 | 59 | 1.00e-20 | 80.5 |
MS.gene057237.t1 | MTR_7g005740 | 66.129 | 62 | 2 | 1 | 1 | 62 | 1 | 43 | 1.52e-19 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene057237.t1 | AT5G24510 | 57.391 | 115 | 40 | 4 | 1 | 110 | 1 | 111 | 4.14e-36 | 119 |
MS.gene057237.t1 | AT5G47700 | 57.658 | 111 | 45 | 1 | 2 | 110 | 3 | 113 | 7.99e-29 | 100 |
MS.gene057237.t1 | AT5G47700 | 57.658 | 111 | 45 | 1 | 2 | 110 | 3 | 113 | 7.99e-29 | 100 |
MS.gene057237.t1 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.26e-28 | 99.0 |
MS.gene057237.t1 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.26e-28 | 99.0 |
MS.gene057237.t1 | AT1G01100 | 60.185 | 108 | 42 | 1 | 4 | 110 | 5 | 112 | 4.26e-28 | 99.0 |
MS.gene057237.t1 | AT1G01100 | 50.459 | 109 | 39 | 1 | 2 | 110 | 3 | 96 | 2.14e-27 | 96.7 |
MS.gene057237.t1 | AT4G00810 | 54.955 | 111 | 48 | 1 | 2 | 110 | 3 | 113 | 2.87e-27 | 97.1 |
MS.gene057237.t1 | AT4G00810 | 54.955 | 111 | 48 | 1 | 2 | 110 | 3 | 113 | 2.87e-27 | 97.1 |
Find 31 sgRNAs with CRISPR-Local
Find 83 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAAAATGAGTTCCGGCGAAT+TGG | 0.294649 | 3.2:-77917623 | None:intergenic |
GTCATCGTCACTTTCTTCCT+TGG | 0.329724 | 3.2:+77916311 | None:intergenic |
ACGTCACCGTTGAATCTTAC+TGG | 0.348075 | 3.2:-77917417 | MS.gene057237:CDS |
AAAATGAGTTCCGGCGAATT+GGG | 0.368280 | 3.2:-77917622 | MS.gene057237:CDS |
TCTGAGCAAGCTTAGCGAAT+AGG | 0.392998 | 3.2:+77917389 | None:intergenic |
GATAATAGACTTACGGTGAT+TGG | 0.399296 | 3.2:+77917559 | None:intergenic |
GCCGTATCTGCACCCGCTGC+TGG | 0.401410 | 3.2:-77917310 | MS.gene057237:CDS |
TCTGCACCCGCTGCTGGTGG+TGG | 0.439771 | 3.2:-77917304 | MS.gene057237:CDS |
GCGGCTCCACCACCAGCAGC+GGG | 0.451994 | 3.2:+77917298 | None:intergenic |
ATAATAGACTTACGGTGATT+GGG | 0.452174 | 3.2:+77917560 | None:intergenic |
GAAGATCGGTACTTTGTTGA+AGG | 0.461021 | 3.2:-77917446 | MS.gene057237:CDS |
ACCTGCCGCCGTTGAAAAGA+AGG | 0.476631 | 3.2:-77917263 | MS.gene057237:intron |
TGCGGCTCCACCACCAGCAG+CGG | 0.489051 | 3.2:+77917297 | None:intergenic |
TTGAACTCCGGCGCTGTTGG+TGG | 0.510539 | 3.2:-77917343 | MS.gene057237:CDS |
ACAATTCACAAAATGAGTTC+CGG | 0.522809 | 3.2:-77917631 | None:intergenic |
GGAAGAAAGTGACGATGACA+TGG | 0.523361 | 3.2:-77916307 | MS.gene057237:CDS |
AGCGGCACCACCAACAGCGC+CGG | 0.527844 | 3.2:+77917336 | None:intergenic |
ACCAGCAGCGGGTGCAGATA+CGG | 0.530473 | 3.2:+77917309 | None:intergenic |
GCAAGCTTAGCGAATAGGCT+TGG | 0.542190 | 3.2:+77917394 | None:intergenic |
TTTGTTTAGGCGGAGAAGAT+CGG | 0.543289 | 3.2:-77917460 | MS.gene057237:intron |
GGCAGGTTCGGCAGCTGCTG+CGG | 0.548908 | 3.2:+77917279 | None:intergenic |
GTAAATGCAGCCCAATTCGC+CGG | 0.571217 | 3.2:+77917612 | None:intergenic |
TCCATCGTCGTGGAGTATCA+AGG | 0.573982 | 3.2:+77917585 | None:intergenic |
ACCTTGATACTCCACGACGA+TGG | 0.576373 | 3.2:-77917586 | MS.gene057237:CDS |
GTATCTGCACCCGCTGCTGG+TGG | 0.603091 | 3.2:-77917307 | MS.gene057237:CDS |
GCTTGGCCAGTAAGATTCAA+CGG | 0.629260 | 3.2:+77917411 | None:intergenic |
GTGTTTGTAGGAGGAAGCCA+AGG | 0.654949 | 3.2:-77916328 | MS.gene057237:intron |
TGATTGGGATTCCATCGTCG+TGG | 0.662981 | 3.2:+77917575 | None:intergenic |
GGGTGCAGATACGGCAACAG+CGG | 0.665524 | 3.2:+77917318 | None:intergenic |
GAAGAAAGTGACGATGACAT+GGG | 0.678372 | 3.2:-77916306 | MS.gene057237:CDS |
ATCGTCGTGGAGTATCAAGG+TGG | 0.738649 | 3.2:+77917588 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AATTGTATTGAAATTAGAAA+CGG | - | chr3.2:77916744-77916763 | MS.gene057237:intron | 15.0% |
!! | TATAAAAGATATAATTTCCT+CGG | - | chr3.2:77916966-77916985 | MS.gene057237:intron | 15.0% |
!!! | AATTATATGTTTTTATCTTG+AGG | + | chr3.2:77916843-77916862 | None:intergenic | 15.0% |
!!! | TTTTCATGCAAAATAATTTT+TGG | + | chr3.2:77917037-77917056 | None:intergenic | 15.0% |
!! | AAAGTAAAAAATGTGGATAT+AGG | + | chr3.2:77917406-77917425 | None:intergenic | 20.0% |
!! | AAGTAAAAAATGTGGATATA+GGG | + | chr3.2:77917405-77917424 | None:intergenic | 20.0% |
!! | ATTGTATTGAAATTAGAAAC+GGG | - | chr3.2:77916745-77916764 | MS.gene057237:intron | 20.0% |
!!! | AATTGTTGTTTTTCTTCATT+GGG | - | chr3.2:77917116-77917135 | MS.gene057237:intron | 20.0% |
!!! | ATATCCACATTTTTTACTTT+TGG | - | chr3.2:77917406-77917425 | MS.gene057237:CDS | 20.0% |
!!! | ATGAAAACATGTAGTTATTT+TGG | - | chr3.2:77917074-77917093 | MS.gene057237:intron | 20.0% |
!!! | ATTTTTCTTTTGTTACTGTT+TGG | - | chr3.2:77916416-77916435 | MS.gene057237:intron | 20.0% |
!!! | TAATTGTTGTTTTTCTTCAT+TGG | - | chr3.2:77917115-77917134 | MS.gene057237:intron | 20.0% |
!!! | TATCCACATTTTTTACTTTT+GGG | - | chr3.2:77917407-77917426 | MS.gene057237:CDS | 20.0% |
!!! | TTTTTCTTTTGTTACTGTTT+GGG | - | chr3.2:77916417-77916436 | MS.gene057237:intron | 20.0% |
! | CGATTTGAAGATTATAGAAA+TGG | + | chr3.2:77916384-77916403 | None:intergenic | 25.0% |
! | GACAACTCTGAATATAATTA+TGG | - | chr3.2:77917166-77917185 | MS.gene057237:intron | 25.0% |
! | TATAGAAATGGAATTGAAGA+GGG | + | chr3.2:77916372-77916391 | None:intergenic | 25.0% |
! | TTAAATAAGCCAATCATAAC+TGG | - | chr3.2:77917379-77917398 | MS.gene057237:CDS | 25.0% |
! | TTATAGAAATGGAATTGAAG+AGG | + | chr3.2:77916373-77916392 | None:intergenic | 25.0% |
!! | AAACAATACCTTCTTTTCAA+CGG | + | chr3.2:77916654-77916673 | None:intergenic | 25.0% |
!!! | ATAAAGTTAACTTGTTTTCC+TGG | - | chr3.2:77917296-77917315 | MS.gene057237:CDS | 25.0% |
!!! | TAAAGTTAACTTGTTTTCCT+GGG | - | chr3.2:77917297-77917316 | MS.gene057237:CDS | 25.0% |
AAAAGATATAATTTCCTCGG+AGG | - | chr3.2:77916969-77916988 | MS.gene057237:intron | 30.0% | |
AAAGATATAATTTCCTCGGA+GGG | - | chr3.2:77916970-77916989 | MS.gene057237:intron | 30.0% | |
AATGTAAGCTTATGCATAAG+TGG | + | chr3.2:77917251-77917270 | None:intergenic | 30.0% | |
AGATGCAAGTTCTACAAAAT+AGG | + | chr3.2:77916943-77916962 | None:intergenic | 30.0% | |
ATAATAGACTTACGGTGATT+GGG | + | chr3.2:77916349-77916368 | None:intergenic | 30.0% | |
ATGTAAGCTTATGCATAAGT+GGG | + | chr3.2:77917250-77917269 | None:intergenic | 30.0% | |
CAGCAAATGACAGTATTTAT+CGG | + | chr3.2:77917006-77917025 | None:intergenic | 30.0% | |
TATTCAGAGTTGTCTTGAAA+AGG | + | chr3.2:77917160-77917179 | None:intergenic | 30.0% | |
TCACCCAAAAGTAAAAAATG+TGG | + | chr3.2:77917413-77917432 | None:intergenic | 30.0% | |
TGTAATGATGAGTTACTGAT+TGG | - | chr3.2:77916715-77916734 | MS.gene057237:intron | 30.0% | |
TGTTAAATGAATGCTAGTTC+TGG | - | chr3.2:77916792-77916811 | MS.gene057237:intron | 30.0% | |
TTTGTTTAGTGACACTGTTT+GGG | + | chr3.2:77917352-77917371 | None:intergenic | 30.0% | |
! | ATTTTGTAGAACTTGCATCT+AGG | - | chr3.2:77916943-77916962 | MS.gene057237:intron | 30.0% |
AAGATATAATTTCCTCGGAG+GGG | - | chr3.2:77916971-77916990 | MS.gene057237:intron | 35.0% | |
CTTCATTGGGATTTGAGAAT+TGG | - | chr3.2:77917129-77917148 | MS.gene057237:intron | 35.0% | |
GAAGAGGGATAATAGACTTA+CGG | + | chr3.2:77916357-77916376 | None:intergenic | 35.0% | |
GATAATAGACTTACGGTGAT+TGG | + | chr3.2:77916350-77916369 | None:intergenic | 35.0% | |
GTTTGTTTAGTGACACTGTT+TGG | + | chr3.2:77917353-77917372 | None:intergenic | 35.0% | |
TCATTCCATACTGTGTTTGT+AGG | - | chr3.2:77917566-77917585 | MS.gene057237:intron | 35.0% | |
! | ATTTTGTGCTGTGATCAAGT+TGG | - | chr3.2:77916910-77916929 | MS.gene057237:intron | 35.0% |
! | TCTTTTGTTACTGTTTGGGT+TGG | - | chr3.2:77916421-77916440 | MS.gene057237:intron | 35.0% |
! | TTTTGTGCTGTGATCAAGTT+GGG | - | chr3.2:77916911-77916930 | MS.gene057237:intron | 35.0% |
!!! | GTTTGGGTTGGTTTTTGTTT+AGG | - | chr3.2:77916433-77916452 | MS.gene057237:intron | 35.0% |
ATCAACAAGACAATCTTCCC+AGG | + | chr3.2:77917317-77917336 | None:intergenic | 40.0% | |
GAAGAAAGTGACGATGACAT+GGG | - | chr3.2:77917600-77917619 | MS.gene057237:CDS | 40.0% | |
GAAGATCGGTACTTTGTTGA+AGG | - | chr3.2:77916460-77916479 | MS.gene057237:intron | 40.0% | |
GATATAGGGCCAGTTATGAT+TGG | + | chr3.2:77917391-77917410 | None:intergenic | 40.0% | |
TTCCATACTGTGTTTGTAGG+AGG | - | chr3.2:77917569-77917588 | MS.gene057237:intron | 40.0% | |
TTCCTCCTACAAACACAGTA+TGG | + | chr3.2:77917574-77917593 | None:intergenic | 40.0% | |
TTTGTTTAGGCGGAGAAGAT+CGG | - | chr3.2:77916446-77916465 | MS.gene057237:intron | 40.0% | |
! | CAATACCTTCTTTTCAACGG+CGG | + | chr3.2:77916651-77916670 | None:intergenic | 40.0% |
! | TTTGTGCTGTGATCAAGTTG+GGG | - | chr3.2:77916912-77916931 | MS.gene057237:intron | 40.0% |
!! | GATGATCTCGTTTTGAACTC+CGG | - | chr3.2:77916551-77916570 | MS.gene057237:intron | 40.0% |
!!! | TGGGTTGGTTTTTGTTTAGG+CGG | - | chr3.2:77916436-77916455 | MS.gene057237:intron | 40.0% |
ACGTCACCGTTGAATCTTAC+TGG | - | chr3.2:77916489-77916508 | MS.gene057237:intron | 45.0% | |
GCTTGGCCAGTAAGATTCAA+CGG | + | chr3.2:77916498-77916517 | None:intergenic | 45.0% | |
GGAAGAAAGTGACGATGACA+TGG | - | chr3.2:77917599-77917618 | MS.gene057237:CDS | 45.0% | |
TCTGAGCAAGCTTAGCGAAT+AGG | + | chr3.2:77916520-77916539 | None:intergenic | 45.0% | |
! | GTCATCGTCACTTTCTTCCT+TGG | + | chr3.2:77917598-77917617 | None:intergenic | 45.0% |
ACCTTGATACTCCACGACGA+TGG | - | chr3.2:77916320-77916339 | MS.gene057237:CDS | 50.0% | |
GCAAGCTTAGCGAATAGGCT+TGG | + | chr3.2:77916515-77916534 | None:intergenic | 50.0% | |
GTAAATGCAGCCCAATTCGC+CGG | + | chr3.2:77916297-77916316 | None:intergenic | 50.0% | |
GTGTTTGTAGGAGGAAGCCA+AGG | - | chr3.2:77917578-77917597 | MS.gene057237:CDS | 50.0% | |
TGATTGGGATTCCATCGTCG+TGG | + | chr3.2:77916334-77916353 | None:intergenic | 50.0% | |
! | ATCGTCGTGGAGTATCAAGG+TGG | + | chr3.2:77916321-77916340 | None:intergenic | 50.0% |
! | TCCATCGTCGTGGAGTATCA+AGG | + | chr3.2:77916324-77916343 | None:intergenic | 50.0% |
ACCTGCCGCCGTTGAAAAGA+AGG | - | chr3.2:77916643-77916662 | MS.gene057237:intron | 55.0% | |
! | ACCTTCTTTTCAACGGCGGC+AGG | + | chr3.2:77916647-77916666 | None:intergenic | 55.0% |
! | CTTTTCAACGGCGGCAGGTT+CGG | + | chr3.2:77916642-77916661 | None:intergenic | 55.0% |
!! | GTTTTGAACTCCGGCGCTGT+TGG | - | chr3.2:77916560-77916579 | MS.gene057237:intron | 55.0% |
ACCAGCAGCGGGTGCAGATA+CGG | + | chr3.2:77916600-77916619 | None:intergenic | 60.0% | |
CGGATACAGAATCCCCTCCG+AGG | + | chr3.2:77916986-77917005 | None:intergenic | 60.0% | |
GGGTGCAGATACGGCAACAG+CGG | + | chr3.2:77916591-77916610 | None:intergenic | 60.0% | |
TTGAACTCCGGCGCTGTTGG+TGG | - | chr3.2:77916563-77916582 | MS.gene057237:intron | 60.0% | |
GTATCTGCACCCGCTGCTGG+TGG | - | chr3.2:77916599-77916618 | MS.gene057237:intron | 65.0% | |
AGCGGCACCACCAACAGCGC+CGG | + | chr3.2:77916573-77916592 | None:intergenic | 70.0% | |
GCCGTATCTGCACCCGCTGC+TGG | - | chr3.2:77916596-77916615 | MS.gene057237:intron | 70.0% | |
GGCAGGTTCGGCAGCTGCTG+CGG | + | chr3.2:77916630-77916649 | None:intergenic | 70.0% | |
TCTGCACCCGCTGCTGGTGG+TGG | - | chr3.2:77916602-77916621 | MS.gene057237:intron | 70.0% | |
TGCGGCTCCACCACCAGCAG+CGG | + | chr3.2:77916612-77916631 | None:intergenic | 70.0% | |
GCGGCTCCACCACCAGCAGC+GGG | + | chr3.2:77916611-77916630 | None:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3.2 | gene | 77916287 | 77917641 | 77916287 | ID=MS.gene057237 |
chr3.2 | mRNA | 77916287 | 77917641 | 77916287 | ID=MS.gene057237.t1;Parent=MS.gene057237 |
chr3.2 | exon | 77917573 | 77917641 | 77917573 | ID=MS.gene057237.t1.exon1;Parent=MS.gene057237.t1 |
chr3.2 | CDS | 77917573 | 77917641 | 77917573 | ID=cds.MS.gene057237.t1;Parent=MS.gene057237.t1 |
chr3.2 | exon | 77917264 | 77917473 | 77917264 | ID=MS.gene057237.t1.exon2;Parent=MS.gene057237.t1 |
chr3.2 | CDS | 77917264 | 77917473 | 77917264 | ID=cds.MS.gene057237.t1;Parent=MS.gene057237.t1 |
chr3.2 | exon | 77916287 | 77916340 | 77916287 | ID=MS.gene057237.t1.exon3;Parent=MS.gene057237.t1 |
chr3.2 | CDS | 77916287 | 77916340 | 77916287 | ID=cds.MS.gene057237.t1;Parent=MS.gene057237.t1 |
Gene Sequence |
Protein sequence |