Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57975.t1 | AES91699.1 | 96.7 | 389 | 10 | 2 | 1 | 388 | 1 | 387 | 1.80E-195 | 691.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57975.t1 | D5LXJ0 | 71.7 | 392 | 83 | 5 | 1 | 388 | 170 | 537 | 4.3e-137 | 489.2 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57975.t1 | G7JHS0 | 96.7 | 389 | 10 | 2 | 1 | 388 | 1 | 387 | 1.3e-195 | 691.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene04991 | MS.gene57975 | 0.822272 | 2.59E-53 | -1.69E-46 |
| MS.gene050623 | MS.gene57975 | 0.820422 | 6.92E-53 | -1.69E-46 |
| MS.gene060869 | MS.gene57975 | -0.819554 | 1.09E-52 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57975.t1 | MTR_4g116370 | 96.658 | 389 | 10 | 2 | 1 | 388 | 1 | 387 | 0.0 | 732 |
| MS.gene57975.t1 | MTR_4g116370 | 96.144 | 389 | 12 | 2 | 1 | 388 | 171 | 557 | 0.0 | 729 |
| MS.gene57975.t1 | MTR_4g116370 | 96.144 | 389 | 12 | 2 | 1 | 388 | 179 | 565 | 0.0 | 729 |
| MS.gene57975.t1 | MTR_4g116370 | 96.144 | 389 | 12 | 2 | 1 | 388 | 83 | 469 | 0.0 | 728 |
| MS.gene57975.t1 | MTR_4g116370 | 96.144 | 389 | 12 | 2 | 1 | 388 | 157 | 543 | 0.0 | 728 |
| MS.gene57975.t1 | MTR_1g026290 | 34.629 | 283 | 156 | 10 | 58 | 334 | 236 | 495 | 4.75e-32 | 128 |
| MS.gene57975.t1 | MTR_1g026290 | 34.629 | 283 | 156 | 10 | 58 | 334 | 236 | 495 | 4.85e-32 | 128 |
| MS.gene57975.t1 | MTR_1g026290 | 34.629 | 283 | 156 | 10 | 58 | 334 | 236 | 495 | 5.88e-32 | 128 |
| MS.gene57975.t1 | MTR_1g026290 | 34.629 | 283 | 156 | 10 | 58 | 334 | 236 | 495 | 5.92e-32 | 128 |
| MS.gene57975.t1 | MTR_1g026290 | 34.629 | 283 | 156 | 10 | 58 | 334 | 15 | 274 | 8.11e-32 | 127 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene57975.t1 | AT5G25270 | 36.390 | 349 | 166 | 8 | 6 | 351 | 176 | 471 | 7.39e-48 | 172 |
| MS.gene57975.t1 | AT5G42220 | 34.597 | 211 | 122 | 3 | 58 | 265 | 250 | 447 | 2.91e-25 | 108 |
| MS.gene57975.t1 | AT5G42220 | 34.597 | 211 | 122 | 3 | 58 | 265 | 250 | 447 | 2.91e-25 | 108 |
| MS.gene57975.t1 | AT5G11080 | 31.210 | 157 | 91 | 2 | 57 | 213 | 123 | 262 | 1.61e-14 | 74.3 |
| MS.gene57975.t1 | AT5G11080 | 31.210 | 157 | 91 | 2 | 57 | 213 | 123 | 262 | 2.50e-14 | 73.9 |
| MS.gene57975.t1 | AT5G11080 | 31.210 | 157 | 91 | 2 | 57 | 213 | 144 | 283 | 4.85e-14 | 73.2 |
Find 121 sgRNAs with CRISPR-Local
Find 185 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCCTTTGCAATGTGGATTC+AGG | 0.236984 | 8.1:+10584062 | None:intergenic |
| ACTTCCGGCGTCAGTTTCTC+TGG | 0.257615 | 8.1:-10585692 | MS.gene57975:CDS |
| GGGCTTTACCATCCCGTTCT+TGG | 0.275600 | 8.1:-10584173 | MS.gene57975:CDS |
| GATAGATTACGGAATACTTT+TGG | 0.275889 | 8.1:-10585715 | MS.gene57975:CDS |
| GTGTATCCCCACGCTCTTCT+TGG | 0.276948 | 8.1:+10584375 | None:intergenic |
| GGGATCTGGTTCTTCACGTT+TGG | 0.283504 | 8.1:-10585314 | MS.gene57975:CDS |
| GCATCTATTGCTGGAGAATC+TGG | 0.286152 | 8.1:-10584284 | MS.gene57975:CDS |
| ACGCTCTTCTTGGCTGGCAT+TGG | 0.292527 | 8.1:+10584385 | None:intergenic |
| CGCTCTTCTTGGCTGGCATT+GGG | 0.305234 | 8.1:+10584386 | None:intergenic |
| GGATCTGGTTCTTCACGTTT+GGG | 0.343525 | 8.1:-10585313 | MS.gene57975:CDS |
| TCCTAATCATATCATGGTTC+AGG | 0.344402 | 8.1:-10584713 | MS.gene57975:intron |
| GGCTTTACCATCCCGTTCTT+GGG | 0.345140 | 8.1:-10584172 | MS.gene57975:CDS |
| TGCAGCAGTACCTGGTCCCT+TGG | 0.347139 | 8.1:-10584231 | MS.gene57975:CDS |
| TTTCAAGCTGGAGCAAGCTT+TGG | 0.360970 | 8.1:-10584608 | MS.gene57975:CDS |
| CCGAAGTTCTTCCAAGGCCT+TGG | 0.364532 | 8.1:+10585803 | None:intergenic |
| TGCGATCAACCACTCAATCT+AGG | 0.370044 | 8.1:-10584961 | MS.gene57975:CDS |
| TTGCTGGAGAATCTGGAATA+AGG | 0.374237 | 8.1:-10584277 | MS.gene57975:CDS |
| TACAACCATGACATTGCGTT+TGG | 0.388304 | 8.1:-10584879 | MS.gene57975:CDS |
| CTTCCGGCGTCAGTTTCTCT+GGG | 0.397182 | 8.1:-10585691 | MS.gene57975:CDS |
| TACTATGAGCCTCAGCTGCT+TGG | 0.398831 | 8.1:+10585347 | None:intergenic |
| CAGTCTGAAGCTGTAGTTAA+TGG | 0.401358 | 8.1:-10584766 | MS.gene57975:CDS |
| AGTCGTGAATTTGATACAAT+TGG | 0.403251 | 8.1:-10585484 | MS.gene57975:intron |
| CGTCCGGATGCATCTATTGC+TGG | 0.406144 | 8.1:-10584293 | MS.gene57975:CDS |
| GAACCATCTGGTAATTCTAC+TGG | 0.406393 | 8.1:-10584194 | MS.gene57975:CDS |
| GCACAGACTGACTCAAGTTT+AGG | 0.410476 | 8.1:-10584566 | MS.gene57975:CDS |
| TTCTTGGCTGGCATTGGGTG+TGG | 0.423169 | 8.1:+10584391 | None:intergenic |
| TCAGTCTGTGCAGCTCCTAC+AGG | 0.423837 | 8.1:+10584578 | None:intergenic |
| AGGGCAGGCAAATAGTGAAC+AGG | 0.424813 | 8.1:-10584129 | MS.gene57975:CDS |
| TGACTAGCAGAACTTTCAAC+TGG | 0.426756 | 8.1:+10584329 | None:intergenic |
| GACTCATATGACTTAGGTAC+TGG | 0.430640 | 8.1:+10585503 | None:intergenic |
| ATCCCCACGCTCTTCTTGGC+TGG | 0.442443 | 8.1:+10584379 | None:intergenic |
| GAGCATGATTCCCAAGGCCT+TGG | 0.443263 | 8.1:-10585814 | MS.gene57975:CDS |
| CGAAGTTCTTCCAAGGCCTT+GGG | 0.443435 | 8.1:+10585804 | None:intergenic |
| CGTCCCCTACTTGATCAAAC+TGG | 0.449051 | 8.1:-10585754 | MS.gene57975:CDS |
| ACCTGAACCATGATATGATT+AGG | 0.449353 | 8.1:+10584712 | None:intergenic |
| ACTATGAGCCTCAGCTGCTT+GGG | 0.454818 | 8.1:+10585348 | None:intergenic |
| ATCTGTATATCGATACGCCT+TGG | 0.455517 | 8.1:+10584518 | None:intergenic |
| TCTTCCATCACCCGCATCCT+TGG | 0.457037 | 8.1:-10585275 | MS.gene57975:CDS |
| GCTGCAACCATGGTTCTAAT+CGG | 0.458329 | 8.1:+10584248 | None:intergenic |
| ACAACCATGACATTGCGTTT+GGG | 0.460634 | 8.1:-10584878 | MS.gene57975:CDS |
| GAATGGATCTGATGCTCCAC+TGG | 0.462859 | 8.1:+10585777 | None:intergenic |
| GCAGCAGTACCTGGTCCCTT+GGG | 0.475180 | 8.1:-10584230 | MS.gene57975:CDS |
| AGTAATGAAGCAATGGGATC+TGG | 0.476060 | 8.1:-10585328 | MS.gene57975:CDS |
| TCTGTATATCGATACGCCTT+GGG | 0.477521 | 8.1:+10584519 | None:intergenic |
| CGTTGAAATCTCCCAAGAAC+GGG | 0.478770 | 8.1:+10584161 | None:intergenic |
| CAATCTAGGGCATTGAGGAC+TGG | 0.486555 | 8.1:-10584947 | MS.gene57975:CDS |
| AAGCTTGCTCCAGCTTGAAA+AGG | 0.487152 | 8.1:+10584611 | None:intergenic |
| TGAACCAGTTTGATCAAGTA+GGG | 0.490565 | 8.1:+10585750 | None:intergenic |
| CCAAGGCCTTGGAAGAACTT+CGG | 0.491774 | 8.1:-10585803 | MS.gene57975:CDS |
| AGATTTCAACGTGTAACTAC+AGG | 0.493475 | 8.1:-10584149 | MS.gene57975:CDS |
| CGTGCTTCTTCAGAACCATC+TGG | 0.498068 | 8.1:-10584206 | MS.gene57975:CDS |
| AAGACTTCTGCCAAGGATGC+GGG | 0.502779 | 8.1:+10585265 | None:intergenic |
| TCAAGCAACCTCTAGGCGTC+CGG | 0.504573 | 8.1:-10584309 | MS.gene57975:CDS |
| CAAATGATCATCGAACAAGC+TGG | 0.507973 | 8.1:-10585229 | MS.gene57975:CDS |
| TCTGCCAAGGATGCGGGTGA+TGG | 0.508021 | 8.1:+10585271 | None:intergenic |
| ACCAGGTACTGCTGCAACCA+TGG | 0.510558 | 8.1:+10584238 | None:intergenic |
| ACCATGGTTGCAGCAGTACC+TGG | 0.511482 | 8.1:-10584239 | MS.gene57975:CDS |
| CAAGACTTCTGCCAAGGATG+CGG | 0.512149 | 8.1:+10585264 | None:intergenic |
| TACTGGTCCTAATCATATCA+TGG | 0.514762 | 8.1:-10584719 | MS.gene57975:CDS |
| GGCTCATAGTAATGAAGCAA+TGG | 0.522818 | 8.1:-10585335 | MS.gene57975:CDS |
| TCAAGTTTAGGTAGTGGACT+TGG | 0.524401 | 8.1:-10584554 | MS.gene57975:CDS |
| AGAGTGTATCAGATAGATTA+CGG | 0.527320 | 8.1:-10585726 | MS.gene57975:CDS |
| GCGATCAACCACTCAATCTA+GGG | 0.536771 | 8.1:-10584960 | MS.gene57975:CDS |
| CTGCTAGTCAAGCAACCTCT+AGG | 0.538894 | 8.1:-10584316 | MS.gene57975:CDS |
| AAATGATCATCGAACAAGCT+GGG | 0.539445 | 8.1:-10585228 | MS.gene57975:CDS |
| CCACTCAATCTAGGGCATTG+AGG | 0.539741 | 8.1:-10584952 | MS.gene57975:CDS |
| GCTCATAGTAATGAAGCAAT+GGG | 0.540566 | 8.1:-10585334 | MS.gene57975:CDS |
| CGTGCTTTGCCTTTGCAATG+TGG | 0.541533 | 8.1:+10584055 | None:intergenic |
| ATGCCAGCCAAGAAGAGCGT+GGG | 0.546687 | 8.1:-10584382 | MS.gene57975:CDS |
| GTGAACCAGTTTGATCAAGT+AGG | 0.547727 | 8.1:+10585749 | None:intergenic |
| AGATTGAGTGGTTGATCGCA+AGG | 0.548030 | 8.1:+10584964 | None:intergenic |
| TCTCCAGCAATAGATGCATC+CGG | 0.554311 | 8.1:+10584290 | None:intergenic |
| GCTCCAGCTTGAAAAGGAAG+AGG | 0.556671 | 8.1:+10584617 | None:intergenic |
| GGGGAATGCCCAAGCAGCTG+AGG | 0.561312 | 8.1:-10585356 | MS.gene57975:CDS |
| TGATCAAGTAGGGGACGGAA+TGG | 0.565104 | 8.1:+10585760 | None:intergenic |
| ACTGACTCAAGTTTAGGTAG+TGG | 0.575634 | 8.1:-10584560 | MS.gene57975:CDS |
| TTCTGAAGAAGCACGACCCA+AGG | 0.578001 | 8.1:+10584214 | None:intergenic |
| ACGGAAGACTCTGCAAGGAA+TGG | 0.578919 | 8.1:-10584035 | None:intergenic |
| ATGATATGATTAGGACCAGT+AGG | 0.579197 | 8.1:+10584721 | None:intergenic |
| AGCTTTGGTGCTGTCCCTGT+AGG | 0.581153 | 8.1:-10584593 | MS.gene57975:CDS |
| AACCATCTGGTAATTCTACT+GGG | 0.583839 | 8.1:-10584193 | MS.gene57975:CDS |
| ATTCACGACTCATATGACTT+AGG | 0.585176 | 8.1:+10585497 | None:intergenic |
| TCAACGTGTAACTACAGGGC+AGG | 0.585805 | 8.1:-10584144 | MS.gene57975:CDS |
| CACATTGCAAAGGCAAAGCA+CGG | 0.586185 | 8.1:-10584054 | MS.gene57975:CDS |
| CAGTCTGTGCAGCTCCTACA+GGG | 0.586356 | 8.1:+10584579 | None:intergenic |
| GATTGAGTGGTTGATCGCAA+GGG | 0.587750 | 8.1:+10584965 | None:intergenic |
| GAAGCACGACCCAAGGGACC+AGG | 0.587781 | 8.1:+10584221 | None:intergenic |
| GACAAAGTTGTCAAAGAACC+AGG | 0.591819 | 8.1:+10585526 | None:intergenic |
| TGGAATCCGAAGTTCTTCCA+AGG | 0.602911 | 8.1:+10585797 | None:intergenic |
| TTACTTGCAGTCAGAGAAGG+GGG | 0.606399 | 8.1:-10585376 | MS.gene57975:intron |
| CCTCAATGCCCTAGATTGAG+TGG | 0.609007 | 8.1:+10584952 | None:intergenic |
| GGAAGAACTTCGGATTCCAG+TGG | 0.611373 | 8.1:-10585793 | MS.gene57975:CDS |
| TTTACTTGCAGTCAGAGAAG+GGG | 0.611476 | 8.1:-10585377 | MS.gene57975:intron |
| ATTGCGTTTGGGTCAAACAC+CGG | 0.617351 | 8.1:-10584867 | MS.gene57975:intron |
| TCTGAAGCTGTAGTTAATGG+TGG | 0.620579 | 8.1:-10584763 | MS.gene57975:CDS |
| GATAGTGCCGATTAGAACCA+TGG | 0.621547 | 8.1:-10584255 | MS.gene57975:CDS |
| AATGCCAGCCAAGAAGAGCG+TGG | 0.622070 | 8.1:-10584383 | MS.gene57975:CDS |
| ATTGAGTGGTTGATCGCAAG+GGG | 0.622548 | 8.1:+10584966 | None:intergenic |
| ACGTTGAAATCTCCCAAGAA+CGG | 0.622703 | 8.1:+10584160 | None:intergenic |
| CAGTTTGATCAAGTAGGGGA+CGG | 0.624652 | 8.1:+10585755 | None:intergenic |
| AGATGCATCCGGACGCCTAG+AGG | 0.624898 | 8.1:+10584301 | None:intergenic |
| CTCCTGAATCCACATTGCAA+AGG | 0.625624 | 8.1:-10584064 | MS.gene57975:CDS |
| ATGAAGGAGCATGATTCCCA+AGG | 0.626007 | 8.1:-10585820 | MS.gene57975:CDS |
| AAAGCACGGAAGACTCTGCA+AGG | 0.628187 | 8.1:-10584040 | MS.gene57975:CDS |
| TTGACCCAAACGCAATGTCA+TGG | 0.628505 | 8.1:+10584874 | None:intergenic |
| GATTTCAACGTGTAACTACA+GGG | 0.640232 | 8.1:-10584148 | MS.gene57975:CDS |
| AATGATCATCGAACAAGCTG+GGG | 0.648848 | 8.1:-10585227 | MS.gene57975:CDS |
| AGAAAGCAAGACTTCTGCCA+AGG | 0.651398 | 8.1:+10585258 | None:intergenic |
| TCTGAAGAAGCACGACCCAA+GGG | 0.651864 | 8.1:+10584215 | None:intergenic |
| GGGCAGGCAAATAGTGAACA+GGG | 0.653751 | 8.1:-10584128 | MS.gene57975:CDS |
| ACTCATATGACTTAGGTACT+GGG | 0.654035 | 8.1:+10585504 | None:intergenic |
| TGCCAGCCAAGAAGAGCGTG+GGG | 0.658703 | 8.1:-10584381 | MS.gene57975:CDS |
| GAAATCTCCCAAGAACGGGA+TGG | 0.659546 | 8.1:+10584165 | None:intergenic |
| TTCCGGCGTCAGTTTCTCTG+GGG | 0.663260 | 8.1:-10585690 | MS.gene57975:CDS |
| AGCCCAGTAGAATTACCAGA+TGG | 0.672721 | 8.1:+10584191 | None:intergenic |
| GACCCCAGAGAAACTGACGC+CGG | 0.688330 | 8.1:+10585688 | None:intergenic |
| TACTTGCAGTCAGAGAAGGG+GGG | 0.692681 | 8.1:-10585375 | MS.gene57975:intron |
| GTGGATTCAGGAGCTGAATG+TGG | 0.704038 | 8.1:+10584074 | None:intergenic |
| GAACCAGTTTGATCAAGTAG+GGG | 0.707025 | 8.1:+10585751 | None:intergenic |
| ATCGATATACAGATAAGACG+AGG | 0.726970 | 8.1:-10584509 | MS.gene57975:intron |
| TTGAGTGGTTGATCGCAAGG+GGG | 0.754069 | 8.1:+10584967 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ACAATTAATTCATTTATATA+TGG | - | chr8.1:10584293-10584312 | MS.gene57975:CDS | 10.0% |
| !! | CTCAATTTAAATTAGTAAAG+AGG | + | chr8.1:10584794-10584813 | None:intergenic | 20.0% |
| !!! | CTAACGTTGTTTTTAATATT+AGG | - | chr8.1:10585434-10585453 | MS.gene57975:intron | 20.0% |
| !!! | TCATTTATATATGGTTTTGT+AGG | - | chr8.1:10584302-10584321 | MS.gene57975:CDS | 20.0% |
| ! | ATAACTATGGAATTCAACAT+GGG | + | chr8.1:10584405-10584424 | None:intergenic | 25.0% |
| ! | TATTACAAGATAAGATACCA+AGG | + | chr8.1:10585031-10585050 | None:intergenic | 25.0% |
| ! | TGAGAAATTTATTGAGTTCA+TGG | - | chr8.1:10584810-10584829 | MS.gene57975:intron | 25.0% |
| ! | TTAGTTAGTAATACAAACAC+AGG | + | chr8.1:10585054-10585073 | None:intergenic | 25.0% |
| !! | ATTGTTTAAAATTACCACTC+AGG | + | chr8.1:10584278-10584297 | None:intergenic | 25.0% |
| !! | GGTCTTTTATTGAATTGTTA+GGG | + | chr8.1:10584713-10584732 | None:intergenic | 25.0% |
| !! | GTCTTTTATTGAATTGTTAG+GGG | + | chr8.1:10584712-10584731 | None:intergenic | 25.0% |
| !! | TCTTTTATTGAATTGTTAGG+GGG | + | chr8.1:10584711-10584730 | None:intergenic | 25.0% |
| !! | TTGTTTAAAATTACCACTCA+GGG | + | chr8.1:10584277-10584296 | None:intergenic | 25.0% |
| AAAGCAGAAAATAAAGGAGA+GGG | + | chr8.1:10584743-10584762 | None:intergenic | 30.0% | |
| AGAGTGTATCAGATAGATTA+CGG | - | chr8.1:10584130-10584149 | MS.gene57975:CDS | 30.0% | |
| AGTCGTGAATTTGATACAAT+TGG | - | chr8.1:10584372-10584391 | MS.gene57975:CDS | 30.0% | |
| CAATGTAACGATGATAACTA+TGG | + | chr8.1:10584418-10584437 | None:intergenic | 30.0% | |
| CTTTCCTTTCTCAAGTAATT+GGG | - | chr8.1:10584759-10584778 | MS.gene57975:CDS | 30.0% | |
| GAAAGGAAAGCAGAAAATAA+AGG | + | chr8.1:10584749-10584768 | None:intergenic | 30.0% | |
| GATAACTATGGAATTCAACA+TGG | + | chr8.1:10584406-10584425 | None:intergenic | 30.0% | |
| ! | AGAGCATTATGCAAAAATAC+AGG | + | chr8.1:10585398-10585417 | None:intergenic | 30.0% |
| ! | CTTTTATTGAATTGTTAGGG+GGG | + | chr8.1:10584710-10584729 | None:intergenic | 30.0% |
| ! | GATAGATTACGGAATACTTT+TGG | - | chr8.1:10584141-10584160 | MS.gene57975:CDS | 30.0% |
| ! | GGGTCTTTTATTGAATTGTT+AGG | + | chr8.1:10584714-10584733 | None:intergenic | 30.0% |
| ! | TGTTTAAAATTACCACTCAG+GGG | + | chr8.1:10584276-10584295 | None:intergenic | 30.0% |
| ! | TTTTATTGAATTGTTAGGGG+GGG | + | chr8.1:10584709-10584728 | None:intergenic | 30.0% |
| !! | AGCTTGTTATTTGAGAATGA+TGG | - | chr8.1:10584449-10584468 | MS.gene57975:intron | 30.0% |
| !! | GGACTATTGTTTTATAACCT+TGG | - | chr8.1:10584930-10584949 | MS.gene57975:CDS | 30.0% |
| AAATGATCATCGAACAAGCT+GGG | - | chr8.1:10584628-10584647 | MS.gene57975:intron | 35.0% | |
| AACCATCTGGTAATTCTACT+GGG | - | chr8.1:10585663-10585682 | MS.gene57975:intron | 35.0% | |
| ACAAGATAAGATACCAAGGA+GGG | + | chr8.1:10585027-10585046 | None:intergenic | 35.0% | |
| ACCTGAACCATGATATGATT+AGG | + | chr8.1:10585147-10585166 | None:intergenic | 35.0% | |
| ACTCATATGACTTAGGTACT+GGG | + | chr8.1:10584355-10584374 | None:intergenic | 35.0% | |
| AGATTTCAACGTGTAACTAC+AGG | - | chr8.1:10585707-10585726 | MS.gene57975:CDS | 35.0% | |
| ATCGATATACAGATAAGACG+AGG | - | chr8.1:10585347-10585366 | MS.gene57975:CDS | 35.0% | |
| ATGATATGATTAGGACCAGT+AGG | + | chr8.1:10585138-10585157 | None:intergenic | 35.0% | |
| ATTCACGACTCATATGACTT+AGG | + | chr8.1:10584362-10584381 | None:intergenic | 35.0% | |
| GAAAGCAGAAAATAAAGGAG+AGG | + | chr8.1:10584744-10584763 | None:intergenic | 35.0% | |
| GATTTCAACGTGTAACTACA+GGG | - | chr8.1:10585708-10585727 | MS.gene57975:CDS | 35.0% | |
| GCATCAGAATTAAGTAGAGA+AGG | + | chr8.1:10584224-10584243 | None:intergenic | 35.0% | |
| GCTCATAGTAATGAAGCAAT+GGG | - | chr8.1:10584522-10584541 | MS.gene57975:CDS | 35.0% | |
| GCTTTCCTTTCTCAAGTAAT+TGG | - | chr8.1:10584758-10584777 | MS.gene57975:CDS | 35.0% | |
| TACAAGATAAGATACCAAGG+AGG | + | chr8.1:10585028-10585047 | None:intergenic | 35.0% | |
| TACTGGTCCTAATCATATCA+TGG | - | chr8.1:10585137-10585156 | MS.gene57975:intron | 35.0% | |
| TCAAATAACAAGCTTGCAGA+AGG | + | chr8.1:10584443-10584462 | None:intergenic | 35.0% | |
| TCCTAATCATATCATGGTTC+AGG | - | chr8.1:10585143-10585162 | MS.gene57975:intron | 35.0% | |
| TGAACCAGTTTGATCAAGTA+GGG | + | chr8.1:10584109-10584128 | None:intergenic | 35.0% | |
| TTTATTGAATTGTTAGGGGG+GGG | + | chr8.1:10584708-10584727 | None:intergenic | 35.0% | |
| ! | ATTTTACTTGCAGTCAGAGA+AGG | - | chr8.1:10584477-10584496 | MS.gene57975:intron | 35.0% |
| ! | CTGTTGCTTATTGAAATGCA+TGG | - | chr8.1:10585210-10585229 | MS.gene57975:intron | 35.0% |
| ! | GATAGTTTTCATGACAAGCA+AGG | + | chr8.1:10585187-10585206 | None:intergenic | 35.0% |
| ! | GTTTAAAATTACCACTCAGG+GGG | + | chr8.1:10584275-10584294 | None:intergenic | 35.0% |
| ! | TTTTACTTGCAGTCAGAGAA+GGG | - | chr8.1:10584478-10584497 | MS.gene57975:intron | 35.0% |
| !!! | ATGGTTTTGTAGGTTATTCC+TGG | - | chr8.1:10584312-10584331 | MS.gene57975:CDS | 35.0% |
| AACTTTGTGCATCTTACAGG+AGG | + | chr8.1:10584201-10584220 | None:intergenic | 40.0% | |
| AATGATCATCGAACAAGCTG+GGG | - | chr8.1:10584629-10584648 | MS.gene57975:intron | 40.0% | |
| ACAACCATGACATTGCGTTT+GGG | - | chr8.1:10584978-10584997 | MS.gene57975:CDS | 40.0% | |
| ACGTTGAAATCTCCCAAGAA+CGG | + | chr8.1:10585699-10585718 | None:intergenic | 40.0% | |
| AGAAAATAAAGGAGAGGGAG+GGG | + | chr8.1:10584738-10584757 | None:intergenic | 40.0% | |
| AGGAACTTTGTGCATCTTAC+AGG | + | chr8.1:10584204-10584223 | None:intergenic | 40.0% | |
| AGTAATGAAGCAATGGGATC+TGG | - | chr8.1:10584528-10584547 | MS.gene57975:CDS | 40.0% | |
| ATCTGTATATCGATACGCCT+TGG | + | chr8.1:10585341-10585360 | None:intergenic | 40.0% | |
| CAAATGATCATCGAACAAGC+TGG | - | chr8.1:10584627-10584646 | MS.gene57975:intron | 40.0% | |
| CAGAAAATAAAGGAGAGGGA+GGG | + | chr8.1:10584739-10584758 | None:intergenic | 40.0% | |
| GAACCAGTTTGATCAAGTAG+GGG | + | chr8.1:10584108-10584127 | None:intergenic | 40.0% | |
| GAACCATCTGGTAATTCTAC+TGG | - | chr8.1:10585662-10585681 | MS.gene57975:intron | 40.0% | |
| GACAAAGTTGTCAAAGAACC+AGG | + | chr8.1:10584333-10584352 | None:intergenic | 40.0% | |
| GACTCATATGACTTAGGTAC+TGG | + | chr8.1:10584356-10584375 | None:intergenic | 40.0% | |
| GGCTCATAGTAATGAAGCAA+TGG | - | chr8.1:10584521-10584540 | MS.gene57975:CDS | 40.0% | |
| GTAGGCGATATAAAAACTGC+AGG | + | chr8.1:10585120-10585139 | None:intergenic | 40.0% | |
| GTGAACCAGTTTGATCAAGT+AGG | + | chr8.1:10584110-10584129 | None:intergenic | 40.0% | |
| TACAACCATGACATTGCGTT+TGG | - | chr8.1:10584977-10584996 | MS.gene57975:CDS | 40.0% | |
| TCTGTATATCGATACGCCTT+GGG | + | chr8.1:10585340-10585359 | None:intergenic | 40.0% | |
| TGACTAGCAGAACTTTCAAC+TGG | + | chr8.1:10585530-10585549 | None:intergenic | 40.0% | |
| TTTACTTGCAGTCAGAGAAG+GGG | - | chr8.1:10584479-10584498 | MS.gene57975:intron | 40.0% | |
| TTTCATGACAAGCAAGGCAT+AGG | + | chr8.1:10585181-10585200 | None:intergenic | 40.0% | |
| ! | ACGGAATACTTTTGGACTTC+CGG | - | chr8.1:10584149-10584168 | MS.gene57975:CDS | 40.0% |
| ! | ACTGACTCAAGTTTAGGTAG+TGG | - | chr8.1:10585296-10585315 | MS.gene57975:CDS | 40.0% |
| ! | CAGTCTGAAGCTGTAGTTAA+TGG | - | chr8.1:10585090-10585109 | MS.gene57975:intron | 40.0% |
| ! | GCAGTTTTTATATCGCCTAC+TGG | - | chr8.1:10585120-10585139 | MS.gene57975:intron | 40.0% |
| ! | TCTGAAGCTGTAGTTAATGG+TGG | - | chr8.1:10585093-10585112 | MS.gene57975:intron | 40.0% |
| ! | TTGCTGGAGAATCTGGAATA+AGG | - | chr8.1:10585579-10585598 | MS.gene57975:intron | 40.0% |
| !! | TCAAGTTTAGGTAGTGGACT+TGG | - | chr8.1:10585302-10585321 | MS.gene57975:CDS | 40.0% |
| AAAATAAAGGAGAGGGAGGG+GGG | + | chr8.1:10584736-10584755 | None:intergenic | 45.0% | |
| ACTACAGCTTCAGACTGCAT+AGG | + | chr8.1:10585087-10585106 | None:intergenic | 45.0% | |
| AGAAAGCAAGACTTCTGCCA+AGG | + | chr8.1:10584601-10584620 | None:intergenic | 45.0% | |
| AGATTGAGTGGTTGATCGCA+AGG | + | chr8.1:10584895-10584914 | None:intergenic | 45.0% | |
| AGCCCAGTAGAATTACCAGA+TGG | + | chr8.1:10585668-10585687 | None:intergenic | 45.0% | |
| ATTGAGTGGTTGATCGCAAG+GGG | + | chr8.1:10584893-10584912 | None:intergenic | 45.0% | |
| ATTGCGTTTGGGTCAAACAC+CGG | - | chr8.1:10584989-10585008 | MS.gene57975:CDS | 45.0% | |
| CACATTGCAAAGGCAAAGCA+CGG | - | chr8.1:10585802-10585821 | MS.gene57975:CDS | 45.0% | |
| CACGCCCAATTACTTGAGAA+AGG | + | chr8.1:10584766-10584785 | None:intergenic | 45.0% | |
| CAGTTTGATCAAGTAGGGGA+CGG | + | chr8.1:10584104-10584123 | None:intergenic | 45.0% | |
| CGTTGAAATCTCCCAAGAAC+GGG | + | chr8.1:10585698-10585717 | None:intergenic | 45.0% | |
| CTCCTGAATCCACATTGCAA+AGG | - | chr8.1:10585792-10585811 | MS.gene57975:CDS | 45.0% | |
| GAAAATAAAGGAGAGGGAGG+GGG | + | chr8.1:10584737-10584756 | None:intergenic | 45.0% | |
| GATTGAGTGGTTGATCGCAA+GGG | + | chr8.1:10584894-10584913 | None:intergenic | 45.0% | |
| GCAGAAAATAAAGGAGAGGG+AGG | + | chr8.1:10584740-10584759 | None:intergenic | 45.0% | |
| GCATCTATTGCTGGAGAATC+TGG | - | chr8.1:10585572-10585591 | MS.gene57975:intron | 45.0% | |
| GCGATCAACCACTCAATCTA+GGG | - | chr8.1:10584896-10584915 | MS.gene57975:CDS | 45.0% | |
| GCTCGAGTAAAAATGCACCA+AGG | + | chr8.1:10584950-10584969 | None:intergenic | 45.0% | |
| TCTCCAGCAATAGATGCATC+CGG | + | chr8.1:10585569-10585588 | None:intergenic | 45.0% | |
| TGCCTTTGCAATGTGGATTC+AGG | + | chr8.1:10585797-10585816 | None:intergenic | 45.0% | |
| TGCGATCAACCACTCAATCT+AGG | - | chr8.1:10584895-10584914 | MS.gene57975:CDS | 45.0% | |
| TGGAATCCGAAGTTCTTCCA+AGG | + | chr8.1:10584062-10584081 | None:intergenic | 45.0% | |
| TGGCATACTTCTACAGCAAC+TGG | - | chr8.1:10584830-10584849 | MS.gene57975:intron | 45.0% | |
| TTACTTGCAGTCAGAGAAGG+GGG | - | chr8.1:10584480-10584499 | MS.gene57975:intron | 45.0% | |
| TTGACCCAAACGCAATGTCA+TGG | + | chr8.1:10584985-10585004 | None:intergenic | 45.0% | |
| TTTCAAGCTGGAGCAAGCTT+TGG | - | chr8.1:10585248-10585267 | MS.gene57975:CDS | 45.0% | |
| ! | AAGCTTGCTCCAGCTTGAAA+AGG | + | chr8.1:10585248-10585267 | None:intergenic | 45.0% |
| ! | ATATTTGAGATCCCCCTGAG+TGG | - | chr8.1:10584261-10584280 | MS.gene57975:CDS | 45.0% |
| ! | ATGAAGGAGCATGATTCCCA+AGG | - | chr8.1:10584036-10584055 | MS.gene57975:CDS | 45.0% |
| ! | GCACAGACTGACTCAAGTTT+AGG | - | chr8.1:10585290-10585309 | MS.gene57975:CDS | 45.0% |
| ! | GGTGCATTTTTACTCGAGCT+TGG | - | chr8.1:10584951-10584970 | MS.gene57975:CDS | 45.0% |
| ! | TTGGCTCAAGTCTTTTCCCA+AGG | - | chr8.1:10585321-10585340 | MS.gene57975:CDS | 45.0% |
| !! | GATAGTGCCGATTAGAACCA+TGG | - | chr8.1:10585601-10585620 | MS.gene57975:intron | 45.0% |
| !! | GCTGCAACCATGGTTCTAAT+CGG | + | chr8.1:10585611-10585630 | None:intergenic | 45.0% |
| !! | GGATCTGGTTCTTCACGTTT+GGG | - | chr8.1:10584543-10584562 | MS.gene57975:CDS | 45.0% |
| AAAGCACGGAAGACTCTGCA+AGG | - | chr8.1:10585816-10585835 | MS.gene57975:CDS | 50.0% | |
| AAATAAAGGAGAGGGAGGGG+GGG | + | chr8.1:10584735-10584754 | None:intergenic | 50.0% | |
| AAGACTTCTGCCAAGGATGC+GGG | + | chr8.1:10584594-10584613 | None:intergenic | 50.0% | |
| ACTATGAGCCTCAGCTGCTT+GGG | + | chr8.1:10584511-10584530 | None:intergenic | 50.0% | |
| AGGGCAGGCAAATAGTGAAC+AGG | - | chr8.1:10585727-10585746 | MS.gene57975:CDS | 50.0% | |
| CAAGACTTCTGCCAAGGATG+CGG | + | chr8.1:10584595-10584614 | None:intergenic | 50.0% | |
| CAGCTTGAAAAGGAAGAGGC+TGG | + | chr8.1:10585238-10585257 | None:intergenic | 50.0% | |
| CCAAGGCCTTGGAAGAACTT+CGG | - | chr8.1:10584053-10584072 | MS.gene57975:CDS | 50.0% | |
| CCTCAATGCCCTAGATTGAG+TGG | + | chr8.1:10584907-10584926 | None:intergenic | 50.0% | |
| CGAAGTTCTTCCAAGGCCTT+GGG | + | chr8.1:10584055-10584074 | None:intergenic | 50.0% | |
| CGTCCCCTACTTGATCAAAC+TGG | - | chr8.1:10584102-10584121 | MS.gene57975:CDS | 50.0% | |
| CGTGCTTCTTCAGAACCATC+TGG | - | chr8.1:10585650-10585669 | MS.gene57975:intron | 50.0% | |
| CGTGCTTTGCCTTTGCAATG+TGG | + | chr8.1:10585804-10585823 | None:intergenic | 50.0% | |
| CTGCTAGTCAAGCAACCTCT+AGG | - | chr8.1:10585540-10585559 | MS.gene57975:intron | 50.0% | |
| GAAATCTCCCAAGAACGGGA+TGG | + | chr8.1:10585694-10585713 | None:intergenic | 50.0% | |
| GAATGGATCTGATGCTCCAC+TGG | + | chr8.1:10584082-10584101 | None:intergenic | 50.0% | |
| GCTCCAGCTTGAAAAGGAAG+AGG | + | chr8.1:10585242-10585261 | None:intergenic | 50.0% | |
| GGAAGAACTTCGGATTCCAG+TGG | - | chr8.1:10584063-10584082 | MS.gene57975:CDS | 50.0% | |
| GGCTTTACCATCCCGTTCTT+GGG | - | chr8.1:10585684-10585703 | MS.gene57975:CDS | 50.0% | |
| GGGCAGGCAAATAGTGAACA+GGG | - | chr8.1:10585728-10585747 | MS.gene57975:CDS | 50.0% | |
| GTGGATTCAGGAGCTGAATG+TGG | + | chr8.1:10585785-10585804 | None:intergenic | 50.0% | |
| TACTATGAGCCTCAGCTGCT+TGG | + | chr8.1:10584512-10584531 | None:intergenic | 50.0% | |
| TACTTGCAGTCAGAGAAGGG+GGG | - | chr8.1:10584481-10584500 | MS.gene57975:intron | 50.0% | |
| TCAACGTGTAACTACAGGGC+AGG | - | chr8.1:10585712-10585731 | MS.gene57975:CDS | 50.0% | |
| TGATCAAGTAGGGGACGGAA+TGG | + | chr8.1:10584099-10584118 | None:intergenic | 50.0% | |
| TTGAGTGGTTGATCGCAAGG+GGG | + | chr8.1:10584892-10584911 | None:intergenic | 50.0% | |
| ! | TCTGAAGAAGCACGACCCAA+GGG | + | chr8.1:10585644-10585663 | None:intergenic | 50.0% |
| ! | TTCTGAAGAAGCACGACCCA+AGG | + | chr8.1:10585645-10585664 | None:intergenic | 50.0% |
| !! | CAATCTAGGGCATTGAGGAC+TGG | - | chr8.1:10584909-10584928 | MS.gene57975:CDS | 50.0% |
| !! | CAGCCTCTTCCTTTTCAAGC+TGG | - | chr8.1:10585236-10585255 | MS.gene57975:CDS | 50.0% |
| !! | CCACTCAATCTAGGGCATTG+AGG | - | chr8.1:10584904-10584923 | MS.gene57975:CDS | 50.0% |
| !! | GGGATCTGGTTCTTCACGTT+TGG | - | chr8.1:10584542-10584561 | MS.gene57975:CDS | 50.0% |
| !!! | GCGGGTGATGGAAGATTTTC+TGG | + | chr8.1:10584576-10584595 | None:intergenic | 50.0% |
| AATAAAGGAGAGGGAGGGGG+GGG | + | chr8.1:10584734-10584753 | None:intergenic | 55.0% | |
| AATGCCAGCCAAGAAGAGCG+TGG | - | chr8.1:10585473-10585492 | MS.gene57975:intron | 55.0% | |
| ACCATGGTTGCAGCAGTACC+TGG | - | chr8.1:10585617-10585636 | MS.gene57975:intron | 55.0% | |
| ACGCTCTTCTTGGCTGGCAT+TGG | + | chr8.1:10585474-10585493 | None:intergenic | 55.0% | |
| ACTTCCGGCGTCAGTTTCTC+TGG | - | chr8.1:10584164-10584183 | MS.gene57975:CDS | 55.0% | |
| AGGAGGGTAACCAAGCCTAC+CGG | + | chr8.1:10585011-10585030 | None:intergenic | 55.0% | |
| CAGTCTGTGCAGCTCCTACA+GGG | + | chr8.1:10585280-10585299 | None:intergenic | 55.0% | |
| CCGAAGTTCTTCCAAGGCCT+TGG | + | chr8.1:10584056-10584075 | None:intergenic | 55.0% | |
| CGCTCTTCTTGGCTGGCATT+GGG | + | chr8.1:10585473-10585492 | None:intergenic | 55.0% | |
| CGTCCGGATGCATCTATTGC+TGG | - | chr8.1:10585563-10585582 | MS.gene57975:intron | 55.0% | |
| CGTTTGGGTCAAACACCGGT+AGG | - | chr8.1:10584993-10585012 | MS.gene57975:CDS | 55.0% | |
| CTTCCGGCGTCAGTTTCTCT+GGG | - | chr8.1:10584165-10584184 | MS.gene57975:CDS | 55.0% | |
| GAGCATGATTCCCAAGGCCT+TGG | - | chr8.1:10584042-10584061 | MS.gene57975:CDS | 55.0% | |
| GGGCTTTACCATCCCGTTCT+TGG | - | chr8.1:10585683-10585702 | MS.gene57975:CDS | 55.0% | |
| GTGTATCCCCACGCTCTTCT+TGG | + | chr8.1:10585484-10585503 | None:intergenic | 55.0% | |
| TCAAGCAACCTCTAGGCGTC+CGG | - | chr8.1:10585547-10585566 | MS.gene57975:intron | 55.0% | |
| TCAGTCTGTGCAGCTCCTAC+AGG | + | chr8.1:10585281-10585300 | None:intergenic | 55.0% | |
| TCTTCCATCACCCGCATCCT+TGG | - | chr8.1:10584581-10584600 | MS.gene57975:CDS | 55.0% | |
| TTCCGGCGTCAGTTTCTCTG+GGG | - | chr8.1:10584166-10584185 | MS.gene57975:CDS | 55.0% | |
| ! | ACCAGGTACTGCTGCAACCA+TGG | + | chr8.1:10585621-10585640 | None:intergenic | 55.0% |
| ! | ATGCCAGCCAAGAAGAGCGT+GGG | - | chr8.1:10585474-10585493 | MS.gene57975:intron | 55.0% |
| ! | GTAGGCTTGGTTACCCTCCT+TGG | - | chr8.1:10585011-10585030 | MS.gene57975:CDS | 55.0% |
| ! | TTCTTGGCTGGCATTGGGTG+TGG | + | chr8.1:10585468-10585487 | None:intergenic | 55.0% |
| !! | AGCTTTGGTGCTGTCCCTGT+AGG | - | chr8.1:10585263-10585282 | MS.gene57975:CDS | 55.0% |
| AGATGCATCCGGACGCCTAG+AGG | + | chr8.1:10585558-10585577 | None:intergenic | 60.0% | |
| ATCCCCACGCTCTTCTTGGC+TGG | + | chr8.1:10585480-10585499 | None:intergenic | 60.0% | |
| GACCCCAGAGAAACTGACGC+CGG | + | chr8.1:10584171-10584190 | None:intergenic | 60.0% | |
| GCAGCAGTACCTGGTCCCTT+GGG | - | chr8.1:10585626-10585645 | MS.gene57975:intron | 60.0% | |
| GGGTCAAACACCGGTAGGCT+TGG | - | chr8.1:10584998-10585017 | MS.gene57975:CDS | 60.0% | |
| TCTGCCAAGGATGCGGGTGA+TGG | + | chr8.1:10584588-10584607 | None:intergenic | 60.0% | |
| TGCAGCAGTACCTGGTCCCT+TGG | - | chr8.1:10585625-10585644 | MS.gene57975:intron | 60.0% | |
| ! | TGCCAGCCAAGAAGAGCGTG+GGG | - | chr8.1:10585475-10585494 | MS.gene57975:intron | 60.0% |
| GAAGCACGACCCAAGGGACC+AGG | + | chr8.1:10585638-10585657 | None:intergenic | 65.0% | |
| GGGGAATGCCCAAGCAGCTG+AGG | - | chr8.1:10584500-10584519 | MS.gene57975:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 10584036 | 10585842 | 10584036 | ID=MS.gene57975 |
| chr8.1 | mRNA | 10584036 | 10585842 | 10584036 | ID=MS.gene57975.t1;Parent=MS.gene57975 |
| chr8.1 | exon | 10585675 | 10585842 | 10585675 | ID=MS.gene57975.t1.exon1;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10585675 | 10585842 | 10585675 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| chr8.1 | exon | 10585485 | 10585554 | 10585485 | ID=MS.gene57975.t1.exon2;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10585485 | 10585554 | 10585485 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| chr8.1 | exon | 10585216 | 10585388 | 10585216 | ID=MS.gene57975.t1.exon3;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10585216 | 10585388 | 10585216 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| chr8.1 | exon | 10584868 | 10585032 | 10584868 | ID=MS.gene57975.t1.exon4;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10584868 | 10585032 | 10584868 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| chr8.1 | exon | 10584714 | 10584785 | 10584714 | ID=MS.gene57975.t1.exon5;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10584714 | 10584785 | 10584714 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| chr8.1 | exon | 10584510 | 10584639 | 10584510 | ID=MS.gene57975.t1.exon6;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10584510 | 10584639 | 10584510 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| chr8.1 | exon | 10584036 | 10584422 | 10584036 | ID=MS.gene57975.t1.exon7;Parent=MS.gene57975.t1 |
| chr8.1 | CDS | 10584036 | 10584422 | 10584036 | ID=cds.MS.gene57975.t1;Parent=MS.gene57975.t1 |
| Gene Sequence |
| Protein sequence |
