Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58170.t1 | RHN43011.1 | 93 | 642 | 40 | 2 | 1 | 638 | 1 | 641 | 0.00E+00 | 1221.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58170.t1 | P08770 | 27.6 | 623 | 410 | 14 | 38 | 632 | 142 | 751 | 1.7e-59 | 232.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58170.t1 | A0A396GS75 | 93.0 | 642 | 40 | 2 | 1 | 638 | 1 | 641 | 0.0e+00 | 1221.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene050442 | MS.gene58170 | 0.805938 | 1.05E-49 | -1.69E-46 |
| MS.gene050807 | MS.gene58170 | 0.804474 | 2.12E-49 | -1.69E-46 |
| MS.gene060683 | MS.gene58170 | 0.803613 | 3.21E-49 | -1.69E-46 |
| MS.gene060685 | MS.gene58170 | 0.804497 | 2.10E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58170.t1 | AT3G42170 | 26.308 | 650 | 406 | 19 | 26 | 633 | 35 | 653 | 1.21e-65 | 229 |
| MS.gene58170.t1 | AT3G42170 | 26.308 | 650 | 406 | 19 | 26 | 633 | 57 | 675 | 1.74e-65 | 229 |
| MS.gene58170.t1 | AT1G18560 | 20.062 | 648 | 448 | 20 | 20 | 632 | 37 | 649 | 1.39e-19 | 94.0 |
Find 103 sgRNAs with CRISPR-Local
Find 157 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGCTCATATCTTGGATCTTA+TGG | 0.130330 | 4.2:+10193460 | MS.gene58170:CDS |
| TTATTTGAAGTTCGAATATT+TGG | 0.158097 | 4.2:+10194006 | MS.gene58170:CDS |
| CTCTCGTATGTTCTCATAAT+TGG | 0.160079 | 4.2:+10194556 | MS.gene58170:CDS |
| TGTTCTCATAATTGGTTATT+TGG | 0.163447 | 4.2:+10194564 | MS.gene58170:CDS |
| CTGTTGAGTGGAGTGAATTT+AGG | 0.180569 | 4.2:+10192961 | MS.gene58170:CDS |
| GTGATTCATTTAAGAGAAAT+TGG | 0.189562 | 4.2:+10193842 | MS.gene58170:CDS |
| GTCGATTGATATAAAATTTC+AGG | 0.201821 | 4.2:+10194189 | MS.gene58170:CDS |
| CAAGCTGGATATACTGATTA+TGG | 0.243175 | 4.2:+10192654 | MS.gene58170:CDS |
| TCGGATGATACTGTGATTAA+TGG | 0.263848 | 4.2:-10194462 | None:intergenic |
| GTTCTCATAATTGGTTATTT+GGG | 0.284192 | 4.2:+10194565 | MS.gene58170:CDS |
| TGTTGAGTGGAGTGAATTTA+GGG | 0.304499 | 4.2:+10192962 | MS.gene58170:CDS |
| ATTTGGATGTGTCCGGTAAA+TGG | 0.309001 | 4.2:+10193627 | MS.gene58170:CDS |
| AAATATTCGAACTTCAAATA+AGG | 0.313484 | 4.2:-10194004 | None:intergenic |
| AGCTTAAAAGGTTTAATGTT+TGG | 0.315159 | 4.2:+10192700 | MS.gene58170:CDS |
| GCTCAATTTCATTCTAGATA+TGG | 0.336750 | 4.2:+10193014 | MS.gene58170:CDS |
| TTATTTGGGTTCTCACCTAT+TGG | 0.337341 | 4.2:+10194579 | MS.gene58170:CDS |
| GAAGGTGATTGGTTGTTTGC+AGG | 0.345100 | 4.2:+10193271 | MS.gene58170:CDS |
| TGTGGGAGAGTGTTTACTTT+TGG | 0.365532 | 4.2:+10192777 | MS.gene58170:CDS |
| CTAAAATCAACGATAACCTT+TGG | 0.385351 | 4.2:-10195041 | None:intergenic |
| TAAGTGTTGTGCTCATATCT+TGG | 0.385878 | 4.2:+10193451 | MS.gene58170:CDS |
| TATAGCATGATTCTTGCATT+TGG | 0.386334 | 4.2:+10193968 | MS.gene58170:CDS |
| TTTGTCAAAATTCATAAAGA+TGG | 0.389240 | 4.2:+10192729 | MS.gene58170:CDS |
| TGATTCATTTAAGAGAAATT+GGG | 0.389517 | 4.2:+10193843 | MS.gene58170:CDS |
| TATATCCAGCTTGTAAAATT+CGG | 0.392048 | 4.2:-10192644 | None:intergenic |
| GAAGGTAGTAAGTGATCTAT+TGG | 0.400741 | 4.2:+10193496 | MS.gene58170:CDS |
| GAACAAGTATAGAAGTTGTA+TGG | 0.405459 | 4.2:+10194515 | MS.gene58170:CDS |
| GATTGGTTGTTTGCAGGAAT+GGG | 0.413369 | 4.2:+10193277 | MS.gene58170:CDS |
| ACATATTCCCGTATGTCCTT+TGG | 0.416502 | 4.2:+10192830 | MS.gene58170:CDS |
| TGAAGTTGATGCACATTTGT+TGG | 0.425897 | 4.2:-10194125 | None:intergenic |
| TGGCAGCAATGGCTTGCATT+TGG | 0.428784 | 4.2:+10193610 | MS.gene58170:CDS |
| ATAAGTAGAAACCCATTTAC+CGG | 0.433597 | 4.2:-10193639 | None:intergenic |
| CGGATGATACTGTGATTAAT+GGG | 0.435537 | 4.2:-10194461 | None:intergenic |
| TGATTGGTTGTTTGCAGGAA+TGG | 0.437956 | 4.2:+10193276 | MS.gene58170:CDS |
| GAGCTATCAAGGAAGGTGAT+TGG | 0.442922 | 4.2:+10193260 | MS.gene58170:CDS |
| GGGGAAGGAAGGAAGGAAGA+TGG | 0.449230 | 4.2:+10194165 | MS.gene58170:CDS |
| TAGCTTTCAGACACTAAAAC+TGG | 0.450549 | 4.2:-10195150 | None:intergenic |
| AAAACAGCTGGCTGCAATTG+AGG | 0.451137 | 4.2:+10193088 | MS.gene58170:CDS |
| TTTGGATGTGTCCGGTAAAT+GGG | 0.454276 | 4.2:+10193628 | MS.gene58170:CDS |
| GCCGGGACTAAAAGCAGATT+CGG | 0.457790 | 4.2:-10194481 | None:intergenic |
| TAAATTTGTTTCGTTTAATG+AGG | 0.458350 | 4.2:+10192992 | MS.gene58170:CDS |
| CTTTGAACACATGTGTTTGA+AGG | 0.461222 | 4.2:+10193697 | MS.gene58170:CDS |
| TCTTAAATGAATCACGGATG+TGG | 0.466253 | 4.2:-10193834 | None:intergenic |
| AGATGACGAGATAAGAGATA+TGG | 0.467294 | 4.2:+10193904 | MS.gene58170:CDS |
| GGAGTTAGATTGCATTGAGC+AGG | 0.467441 | 4.2:-10195107 | None:intergenic |
| TTGTGGTTATATTACTTTAG+CGG | 0.468678 | 4.2:+10193157 | MS.gene58170:CDS |
| CTTTCCCACTCTTCACTCGA+TGG | 0.480852 | 4.2:-10193740 | None:intergenic |
| CTTGTTCAAAATACAGCTGC+CGG | 0.489414 | 4.2:-10194499 | None:intergenic |
| AAACAGCTGGCTGCAATTGA+GGG | 0.489802 | 4.2:+10193089 | MS.gene58170:CDS |
| CTCCACTCAACAGACCGAAA+TGG | 0.493386 | 4.2:-10192951 | None:intergenic |
| TGTGTGAATGTATGACTTGT+GGG | 0.496624 | 4.2:+10192760 | MS.gene58170:CDS |
| AGATTGCATTGAGCAGGAAG+TGG | 0.496743 | 4.2:-10195101 | None:intergenic |
| ACTTCTTCCGCTTCTTCTTG+TGG | 0.505319 | 4.2:+10193140 | MS.gene58170:CDS |
| CTTTAATGGGGAAGGAAGGA+AGG | 0.505942 | 4.2:+10194158 | MS.gene58170:CDS |
| ATTGGTTGTTTGCAGGAATG+GGG | 0.508130 | 4.2:+10193278 | MS.gene58170:CDS |
| TCGAGTGAAGAGTGGGAAAG+AGG | 0.510341 | 4.2:+10193743 | MS.gene58170:CDS |
| TTTCATAACCAAAGGACATA+CGG | 0.511933 | 4.2:-10192838 | None:intergenic |
| ATGTACTTCCAATATTGTAA+AGG | 0.515430 | 4.2:-10194387 | None:intergenic |
| TTCCATTTCGGTCTGTTGAG+TGG | 0.519430 | 4.2:+10192949 | MS.gene58170:CDS |
| GTGATCTATTGGACAAGATA+AGG | 0.521247 | 4.2:+10193507 | MS.gene58170:CDS |
| TTTCCCACTCTTCACTCGAT+GGG | 0.522349 | 4.2:-10193739 | None:intergenic |
| TGTCAATGTGTAGAAGAAGT+TGG | 0.524801 | 4.2:+10193578 | MS.gene58170:CDS |
| TTACAATATTGGAAGTACAT+AGG | 0.527430 | 4.2:+10194390 | MS.gene58170:CDS |
| AGCTCAAAATTATCATGTGA+AGG | 0.531258 | 4.2:-10193242 | None:intergenic |
| TATGGTTCAAGAGAGTTTGA+AGG | 0.533530 | 4.2:+10193478 | MS.gene58170:CDS |
| GATTGCATTGAGCAGGAAGT+GGG | 0.534017 | 4.2:-10195100 | None:intergenic |
| ACGATAACCTTTGGAAGGAA+TGG | 0.537057 | 4.2:-10195032 | None:intergenic |
| GAAGAAGTTGGTGGCGGTGA+TGG | 0.546185 | 4.2:+10193590 | MS.gene58170:CDS |
| CTTCAAACACATGTGTTCAA+AGG | 0.548691 | 4.2:-10193696 | None:intergenic |
| TTCATAACCAAAGGACATAC+GGG | 0.549657 | 4.2:-10192837 | None:intergenic |
| GGAAGCATGTTATACTTGTA+CGG | 0.551656 | 4.2:-10195077 | None:intergenic |
| CATCTCTAGCCATCCTTGCA+AGG | 0.553140 | 4.2:-10194428 | None:intergenic |
| ATATGATATCCTTGCAAGGA+TGG | 0.555595 | 4.2:+10194419 | MS.gene58170:CDS |
| CTTAAATGAATCACGGATGT+GGG | 0.556468 | 4.2:-10193833 | None:intergenic |
| TGTTATGCCATTCCTTCCAA+AGG | 0.563054 | 4.2:+10195025 | MS.gene58170:CDS |
| ATCTGAGTGTGTCAAACTCT+AGG | 0.568175 | 4.2:+10193543 | MS.gene58170:CDS |
| ACTCTTCACTCGATGGGCAA+TGG | 0.569172 | 4.2:-10193733 | None:intergenic |
| GATTCATTTAAGAGAAATTG+GGG | 0.572852 | 4.2:+10193844 | MS.gene58170:CDS |
| GGCTTGCATTTGGATGTGTC+CGG | 0.573694 | 4.2:+10193620 | MS.gene58170:CDS |
| AATCAACGATAACCTTTGGA+AGG | 0.578060 | 4.2:-10195037 | None:intergenic |
| AATTTCTCTTAAATGAATCA+CGG | 0.585444 | 4.2:-10193840 | None:intergenic |
| ATTTGCAGTATGGACTGCAT+TGG | 0.587369 | 4.2:+10192594 | None:intergenic |
| AATATAACCACAAGAAGAAG+CGG | 0.591051 | 4.2:-10193147 | None:intergenic |
| GGTGGCGGTGATGGCAGCAA+TGG | 0.591543 | 4.2:+10193599 | MS.gene58170:CDS |
| TTGTTCAAAATACAGCTGCC+GGG | 0.592430 | 4.2:-10194498 | None:intergenic |
| TACGGAGACAGTAAAAGATA+AGG | 0.592519 | 4.2:+10194057 | MS.gene58170:CDS |
| GCTCAAAATTATCATGTGAA+GGG | 0.602260 | 4.2:-10193241 | None:intergenic |
| TTCATTTAAGAGAAATTGGG+GGG | 0.605851 | 4.2:+10193846 | MS.gene58170:CDS |
| GTAAATATGATATCCTTGCA+AGG | 0.610854 | 4.2:+10194415 | MS.gene58170:CDS |
| ATGTGTGAATGTATGACTTG+TGG | 0.610977 | 4.2:+10192759 | MS.gene58170:CDS |
| AAGATAAGGTGAACAATGTG+AGG | 0.612446 | 4.2:+10194071 | MS.gene58170:CDS |
| ATACGAGATTTCATAACCAA+AGG | 0.614487 | 4.2:-10192846 | None:intergenic |
| TTGCCCATCGAGTGAAGAGT+GGG | 0.616097 | 4.2:+10193736 | MS.gene58170:CDS |
| ATTGCCCATCGAGTGAAGAG+TGG | 0.619785 | 4.2:+10193735 | MS.gene58170:CDS |
| TTGCATTGAGCAGGAAGTGG+GGG | 0.622571 | 4.2:-10195098 | None:intergenic |
| CAGCTGGCTGCAATTGAGGG+TGG | 0.632447 | 4.2:+10193092 | MS.gene58170:CDS |
| AAGGACATACGGGAATATGT+AGG | 0.635462 | 4.2:-10192827 | None:intergenic |
| AGTAGATTGAGAAATCATAG+TGG | 0.648307 | 4.2:-10193807 | None:intergenic |
| ATTGCATTGAGCAGGAAGTG+GGG | 0.650325 | 4.2:-10195099 | None:intergenic |
| CTGGCTGTTGAGAATAGTGT+AGG | 0.664736 | 4.2:-10195131 | None:intergenic |
| GCTGTTGAGAATAGTGTAGG+TGG | 0.664881 | 4.2:-10195128 | None:intergenic |
| CAATGTGTAGAAGAAGTTGG+TGG | 0.687068 | 4.2:+10193581 | MS.gene58170:CDS |
| ATTCATTTAAGAGAAATTGG+GGG | 0.688175 | 4.2:+10193845 | MS.gene58170:CDS |
| TGTGTAGAAGAAGTTGGTGG+CGG | 0.691255 | 4.2:+10193584 | MS.gene58170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTTTCATTATATTAATCT+TGG | + | chr4.2:10194667-10194686 | MS.gene58170:intron | 10.0% |
| !! | AAAATAAATATTTAAGCAGA+AGG | - | chr4.2:10194251-10194270 | None:intergenic | 15.0% |
| !! | ATAAAAATCCTTTACAATAT+TGG | + | chr4.2:10194379-10194398 | MS.gene58170:CDS | 15.0% |
| !! | TAAAAAATTATCTTCCATTT+CGG | + | chr4.2:10192937-10192956 | MS.gene58170:CDS | 15.0% |
| !!! | ATATTTATTTTTTCTGTGAT+TGG | + | chr4.2:10194260-10194279 | MS.gene58170:intron | 15.0% |
| !! | AAATATTCGAACTTCAAATA+AGG | - | chr4.2:10194007-10194026 | None:intergenic | 20.0% |
| !! | AATTTCTCTTAAATGAATCA+CGG | - | chr4.2:10193843-10193862 | None:intergenic | 20.0% |
| !! | TGATTCATTTAAGAGAAATT+GGG | + | chr4.2:10193843-10193862 | MS.gene58170:CDS | 20.0% |
| !! | TTTGTCAAAATTCATAAAGA+TGG | + | chr4.2:10192729-10192748 | MS.gene58170:CDS | 20.0% |
| !!! | AAATATTTTTTCTGTCACTA+TGG | + | chr4.2:10193310-10193329 | MS.gene58170:CDS | 20.0% |
| !!! | GAATTCTTGAAGATTTTTTA+TGG | + | chr4.2:10193779-10193798 | MS.gene58170:CDS | 20.0% |
| !!! | TAAATTTGTTTCGTTTAATG+AGG | + | chr4.2:10192992-10193011 | MS.gene58170:CDS | 20.0% |
| !!! | TTAAAATGTTTTTCTAGAGA+TGG | - | chr4.2:10193434-10193453 | None:intergenic | 20.0% |
| !!! | TTATTTGAAGTTCGAATATT+TGG | + | chr4.2:10194006-10194025 | MS.gene58170:CDS | 20.0% |
| !!! | TTCTCTTCTAAATTATTTTC+AGG | + | chr4.2:10195002-10195021 | MS.gene58170:intron | 20.0% |
| ! | AAAACTGAAGATTCATAGAT+TGG | + | chr4.2:10194797-10194816 | MS.gene58170:intron | 25.0% |
| ! | AGCTTAAAAGGTTTAATGTT+TGG | + | chr4.2:10192700-10192719 | MS.gene58170:CDS | 25.0% |
| ! | ATGTACTTCCAATATTGTAA+AGG | - | chr4.2:10194390-10194409 | None:intergenic | 25.0% |
| ! | ATTCATTTAAGAGAAATTGG+GGG | + | chr4.2:10193845-10193864 | MS.gene58170:CDS | 25.0% |
| ! | GAGTATCTATACGAAAAATT+AGG | + | chr4.2:10194028-10194047 | MS.gene58170:CDS | 25.0% |
| ! | GATTCATTTAAGAGAAATTG+GGG | + | chr4.2:10193844-10193863 | MS.gene58170:CDS | 25.0% |
| ! | GTCGATTGATATAAAATTTC+AGG | + | chr4.2:10194189-10194208 | MS.gene58170:CDS | 25.0% |
| ! | GTGATTCATTTAAGAGAAAT+TGG | + | chr4.2:10193842-10193861 | MS.gene58170:CDS | 25.0% |
| ! | GTTCTCATAATTGGTTATTT+GGG | + | chr4.2:10194565-10194584 | MS.gene58170:CDS | 25.0% |
| ! | TATATCCAGCTTGTAAAATT+CGG | - | chr4.2:10192647-10192666 | None:intergenic | 25.0% |
| ! | TGTTCTCATAATTGGTTATT+TGG | + | chr4.2:10194564-10194583 | MS.gene58170:CDS | 25.0% |
| ! | TTGCGATAAAATTTACCAAT+AGG | - | chr4.2:10194597-10194616 | None:intergenic | 25.0% |
| ! | TTGTGGTTATATTACTTTAG+CGG | + | chr4.2:10193157-10193176 | MS.gene58170:CDS | 25.0% |
| !! | ATGATAATTTTGAGCTATCA+AGG | + | chr4.2:10193249-10193268 | MS.gene58170:CDS | 25.0% |
| !! | CTCATTTTATGGATAATCAA+TGG | + | chr4.2:10193180-10193199 | MS.gene58170:CDS | 25.0% |
| !! | TTACAATATTGGAAGTACAT+AGG | + | chr4.2:10194390-10194409 | MS.gene58170:CDS | 25.0% |
| !!! | AACCTTTTAAGCTTTTTCTT+TGG | - | chr4.2:10192693-10192712 | None:intergenic | 25.0% |
| !!! | TCAACTCGTTTTTCTTTAAT+GGG | + | chr4.2:10194145-10194164 | MS.gene58170:CDS | 25.0% |
| !!! | TTCAACTCGTTTTTCTTTAA+TGG | + | chr4.2:10194144-10194163 | MS.gene58170:CDS | 25.0% |
| AAGAGGCAAAAAAAATATGC+AGG | + | chr4.2:10194309-10194328 | MS.gene58170:CDS | 30.0% | |
| AATATAACCACAAGAAGAAG+CGG | - | chr4.2:10193150-10193169 | None:intergenic | 30.0% | |
| AGAGAAATTGAAAAAACAGC+TGG | + | chr4.2:10193076-10193095 | MS.gene58170:CDS | 30.0% | |
| AGCTCAAAAAGATTGATCAT+AGG | + | chr4.2:10192883-10192902 | MS.gene58170:CDS | 30.0% | |
| AGCTCAAAATTATCATGTGA+AGG | - | chr4.2:10193245-10193264 | None:intergenic | 30.0% | |
| AGGCATTTCTTGAAAAAAAG+AGG | + | chr4.2:10194292-10194311 | MS.gene58170:intron | 30.0% | |
| AGTAGATTGAGAAATCATAG+TGG | - | chr4.2:10193810-10193829 | None:intergenic | 30.0% | |
| ATAAGTAGAAACCCATTTAC+CGG | - | chr4.2:10193642-10193661 | None:intergenic | 30.0% | |
| ATACGAGATTTCATAACCAA+AGG | - | chr4.2:10192849-10192868 | None:intergenic | 30.0% | |
| ATTGAGGAGACAAGAATAAT+TGG | + | chr4.2:10194725-10194744 | MS.gene58170:intron | 30.0% | |
| CAAAAAGATTGATCATAGGA+TGG | + | chr4.2:10192887-10192906 | MS.gene58170:CDS | 30.0% | |
| CGAAAAATTAGGTCATGATA+CGG | + | chr4.2:10194039-10194058 | MS.gene58170:CDS | 30.0% | |
| CTAAAATCAACGATAACCTT+TGG | - | chr4.2:10195044-10195063 | None:intergenic | 30.0% | |
| CTCCAAAGAAAAAGCTTAAA+AGG | + | chr4.2:10192688-10192707 | MS.gene58170:CDS | 30.0% | |
| GAACAAGTATAGAAGTTGTA+TGG | + | chr4.2:10194515-10194534 | MS.gene58170:CDS | 30.0% | |
| GCTCAAAATTATCATGTGAA+GGG | - | chr4.2:10193244-10193263 | None:intergenic | 30.0% | |
| GCTCAATTTCATTCTAGATA+TGG | + | chr4.2:10193014-10193033 | MS.gene58170:CDS | 30.0% | |
| GTAAATATGATATCCTTGCA+AGG | + | chr4.2:10194415-10194434 | MS.gene58170:CDS | 30.0% | |
| TATAGCATGATTCTTGCATT+TGG | + | chr4.2:10193968-10193987 | MS.gene58170:CDS | 30.0% | |
| TCTTCTCCTAATCAACTAAA+AGG | - | chr4.2:10194865-10194884 | None:intergenic | 30.0% | |
| TTCATTTAAGAGAAATTGGG+GGG | + | chr4.2:10193846-10193865 | MS.gene58170:CDS | 30.0% | |
| TTTCATAACCAAAGGACATA+CGG | - | chr4.2:10192841-10192860 | None:intergenic | 30.0% | |
| ! | TAATTTTGAGCTATCAAGGA+AGG | + | chr4.2:10193253-10193272 | MS.gene58170:CDS | 30.0% |
| ! | TCTGTGATTGGAATTTTCAT+AGG | + | chr4.2:10194272-10194291 | MS.gene58170:intron | 30.0% |
| !! | CAACTCGTTTTTCTTTAATG+GGG | + | chr4.2:10194146-10194165 | MS.gene58170:CDS | 30.0% |
| !! | CTTTTAAGCTTTTTCTTTGG+AGG | - | chr4.2:10192690-10192709 | None:intergenic | 30.0% |
| !!! | AATCTTCAGTTTTGTTCTCA+TGG | - | chr4.2:10194790-10194809 | None:intergenic | 30.0% |
| AAGATAAGGTGAACAATGTG+AGG | + | chr4.2:10194071-10194090 | MS.gene58170:CDS | 35.0% | |
| AATCAACGATAACCTTTGGA+AGG | - | chr4.2:10195040-10195059 | None:intergenic | 35.0% | |
| AGATGACGAGATAAGAGATA+TGG | + | chr4.2:10193904-10193923 | MS.gene58170:CDS | 35.0% | |
| AGGCAAAAAAAATATGCAGG+TGG | + | chr4.2:10194312-10194331 | MS.gene58170:CDS | 35.0% | |
| ATATGATATCCTTGCAAGGA+TGG | + | chr4.2:10194419-10194438 | MS.gene58170:CDS | 35.0% | |
| ATCTATTGAGAAGATCTCTG+AGG | - | chr4.2:10194933-10194952 | None:intergenic | 35.0% | |
| ATGTGTGAATGTATGACTTG+TGG | + | chr4.2:10192759-10192778 | MS.gene58170:CDS | 35.0% | |
| CGGATGATACTGTGATTAAT+GGG | - | chr4.2:10194464-10194483 | None:intergenic | 35.0% | |
| CTCTCGTATGTTCTCATAAT+TGG | + | chr4.2:10194556-10194575 | MS.gene58170:CDS | 35.0% | |
| CTGAAGATTCATAGATTGGA+AGG | + | chr4.2:10194801-10194820 | MS.gene58170:intron | 35.0% | |
| CTTAAATGAATCACGGATGT+GGG | - | chr4.2:10193836-10193855 | None:intergenic | 35.0% | |
| CTTCAAACACATGTGTTCAA+AGG | - | chr4.2:10193699-10193718 | None:intergenic | 35.0% | |
| CTTTGAACACATGTGTTTGA+AGG | + | chr4.2:10193697-10193716 | MS.gene58170:CDS | 35.0% | |
| GAAGGTAGTAAGTGATCTAT+TGG | + | chr4.2:10193496-10193515 | MS.gene58170:CDS | 35.0% | |
| GTGATCTATTGGACAAGATA+AGG | + | chr4.2:10193507-10193526 | MS.gene58170:CDS | 35.0% | |
| TACGGAGACAGTAAAAGATA+AGG | + | chr4.2:10194057-10194076 | MS.gene58170:CDS | 35.0% | |
| TATCAACGCACAGATCAATT+TGG | + | chr4.2:10194695-10194714 | MS.gene58170:intron | 35.0% | |
| TATGGTTCAAGAGAGTTTGA+AGG | + | chr4.2:10193478-10193497 | MS.gene58170:CDS | 35.0% | |
| TCCTAATCAACTAAAAGGAG+AGG | - | chr4.2:10194860-10194879 | None:intergenic | 35.0% | |
| TCGGATGATACTGTGATTAA+TGG | - | chr4.2:10194465-10194484 | None:intergenic | 35.0% | |
| TCTTAAATGAATCACGGATG+TGG | - | chr4.2:10193837-10193856 | None:intergenic | 35.0% | |
| TGCTCATATCTTGGATCTTA+TGG | + | chr4.2:10193460-10193479 | MS.gene58170:CDS | 35.0% | |
| TGTCAATGTGTAGAAGAAGT+TGG | + | chr4.2:10193578-10193597 | MS.gene58170:CDS | 35.0% | |
| TGTTGAGTGGAGTGAATTTA+GGG | + | chr4.2:10192962-10192981 | MS.gene58170:CDS | 35.0% | |
| TTCATAACCAAAGGACATAC+GGG | - | chr4.2:10192840-10192859 | None:intergenic | 35.0% | |
| ! | CAAGCTGGATATACTGATTA+TGG | + | chr4.2:10192654-10192673 | MS.gene58170:CDS | 35.0% |
| ! | GGAAGCATGTTATACTTGTA+CGG | - | chr4.2:10195080-10195099 | None:intergenic | 35.0% |
| ! | TAAGTGTTGTGCTCATATCT+TGG | + | chr4.2:10193451-10193470 | MS.gene58170:CDS | 35.0% |
| ! | TACTTTAGCGGCTCATTTTA+TGG | + | chr4.2:10193169-10193188 | MS.gene58170:CDS | 35.0% |
| ! | TGTGTGAATGTATGACTTGT+GGG | + | chr4.2:10192760-10192779 | MS.gene58170:CDS | 35.0% |
| ! | TTATTTGGGTTCTCACCTAT+TGG | + | chr4.2:10194579-10194598 | MS.gene58170:CDS | 35.0% |
| ! | TTTTCTTTAATGGGGAAGGA+AGG | + | chr4.2:10194154-10194173 | MS.gene58170:CDS | 35.0% |
| !! | ACCTCTCCTTTTAGTTGATT+AGG | + | chr4.2:10194856-10194875 | MS.gene58170:intron | 35.0% |
| !! | CTTTTTGAGCTTGAAATGCT+CGG | - | chr4.2:10192874-10192893 | None:intergenic | 35.0% |
| !! | TCGTTTTTCTTTAATGGGGA+AGG | + | chr4.2:10194150-10194169 | MS.gene58170:CDS | 35.0% |
| !! | TGAAGTTGATGCACATTTGT+TGG | - | chr4.2:10194128-10194147 | None:intergenic | 35.0% |
| !! | TGTGTTTGAGCTTTTGTTGT+TGG | + | chr4.2:10193117-10193136 | MS.gene58170:CDS | 35.0% |
| AAGGACATACGGGAATATGT+AGG | - | chr4.2:10192830-10192849 | None:intergenic | 40.0% | |
| ACATATTCCCGTATGTCCTT+TGG | + | chr4.2:10192830-10192849 | MS.gene58170:CDS | 40.0% | |
| ATCTGAGTGTGTCAAACTCT+AGG | + | chr4.2:10193543-10193562 | MS.gene58170:CDS | 40.0% | |
| ATTGGTTGTTTGCAGGAATG+GGG | + | chr4.2:10193278-10193297 | MS.gene58170:CDS | 40.0% | |
| ATTTGGATGTGTCCGGTAAA+TGG | + | chr4.2:10193627-10193646 | MS.gene58170:CDS | 40.0% | |
| CAATGTGTAGAAGAAGTTGG+TGG | + | chr4.2:10193581-10193600 | MS.gene58170:CDS | 40.0% | |
| CTGTTGAGTGGAGTGAATTT+AGG | + | chr4.2:10192961-10192980 | MS.gene58170:CDS | 40.0% | |
| CTTGTTCAAAATACAGCTGC+CGG | - | chr4.2:10194502-10194521 | None:intergenic | 40.0% | |
| GATTGGAAGGACAACTGATT+AGG | + | chr4.2:10194814-10194833 | MS.gene58170:intron | 40.0% | |
| GCACAGATCAATTTGGAGAT+GGG | + | chr4.2:10194702-10194721 | MS.gene58170:intron | 40.0% | |
| TCAATTTGGAGATGGGATTG+AGG | + | chr4.2:10194709-10194728 | MS.gene58170:intron | 40.0% | |
| TGTTATGCCATTCCTTCCAA+AGG | + | chr4.2:10195025-10195044 | MS.gene58170:CDS | 40.0% | |
| TTGTTCAAAATACAGCTGCC+GGG | - | chr4.2:10194501-10194520 | None:intergenic | 40.0% | |
| TTTGGATGTGTCCGGTAAAT+GGG | + | chr4.2:10193628-10193647 | MS.gene58170:CDS | 40.0% | |
| ! | ACGATAACCTTTGGAAGGAA+TGG | - | chr4.2:10195035-10195054 | None:intergenic | 40.0% |
| ! | GAAGTCCGAATTTTACAAGC+TGG | + | chr4.2:10192639-10192658 | MS.gene58170:CDS | 40.0% |
| ! | GATTGGTTGTTTGCAGGAAT+GGG | + | chr4.2:10193277-10193296 | MS.gene58170:CDS | 40.0% |
| ! | TGATTGGTTGTTTGCAGGAA+TGG | + | chr4.2:10193276-10193295 | MS.gene58170:CDS | 40.0% |
| !! | AGATCTCTGAGGTGAAGAAA+TGG | - | chr4.2:10194922-10194941 | None:intergenic | 40.0% |
| !! | GAGTGTTTACTTTTGGTGGA+AGG | + | chr4.2:10192784-10192803 | MS.gene58170:CDS | 40.0% |
| !! | TTTACTTTTGGTGGAAGGTC+AGG | + | chr4.2:10192789-10192808 | MS.gene58170:CDS | 40.0% |
| !!! | TGTGGGAGAGTGTTTACTTT+TGG | + | chr4.2:10192777-10192796 | MS.gene58170:CDS | 40.0% |
| AAAACAGCTGGCTGCAATTG+AGG | + | chr4.2:10193088-10193107 | MS.gene58170:CDS | 45.0% | |
| AAACAGCTGGCTGCAATTGA+GGG | + | chr4.2:10193089-10193108 | MS.gene58170:CDS | 45.0% | |
| ACTTCTTCCGCTTCTTCTTG+TGG | + | chr4.2:10193140-10193159 | MS.gene58170:CDS | 45.0% | |
| AGATTGCATTGAGCAGGAAG+TGG | - | chr4.2:10195104-10195123 | None:intergenic | 45.0% | |
| ATTGCATTGAGCAGGAAGTG+GGG | - | chr4.2:10195102-10195121 | None:intergenic | 45.0% | |
| CGCACAGATCAATTTGGAGA+TGG | + | chr4.2:10194701-10194720 | MS.gene58170:intron | 45.0% | |
| CTGGCTGTTGAGAATAGTGT+AGG | - | chr4.2:10195134-10195153 | None:intergenic | 45.0% | |
| CTTTAATGGGGAAGGAAGGA+AGG | + | chr4.2:10194158-10194177 | MS.gene58170:CDS | 45.0% | |
| GAGCTATCAAGGAAGGTGAT+TGG | + | chr4.2:10193260-10193279 | MS.gene58170:CDS | 45.0% | |
| GATTGCATTGAGCAGGAAGT+GGG | - | chr4.2:10195103-10195122 | None:intergenic | 45.0% | |
| GCTGTTGAGAATAGTGTAGG+TGG | - | chr4.2:10195131-10195150 | None:intergenic | 45.0% | |
| GGAAGGACAACTGATTAGGT+TGG | + | chr4.2:10194818-10194837 | MS.gene58170:intron | 45.0% | |
| GGAGTTAGATTGCATTGAGC+AGG | - | chr4.2:10195110-10195129 | None:intergenic | 45.0% | |
| TTCCATTTCGGTCTGTTGAG+TGG | + | chr4.2:10192949-10192968 | MS.gene58170:CDS | 45.0% | |
| TTTCCCACTCTTCACTCGAT+GGG | - | chr4.2:10193742-10193761 | None:intergenic | 45.0% | |
| ! | GAAGGTGATTGGTTGTTTGC+AGG | + | chr4.2:10193271-10193290 | MS.gene58170:CDS | 45.0% |
| !! | TCCGAATCTGCTTTTAGTCC+CGG | + | chr4.2:10194480-10194499 | MS.gene58170:CDS | 45.0% |
| !! | TGTGTAGAAGAAGTTGGTGG+CGG | + | chr4.2:10193584-10193603 | MS.gene58170:CDS | 45.0% |
| !!! | GGGAGAGTGTTTACTTTTGG+TGG | + | chr4.2:10192780-10192799 | MS.gene58170:CDS | 45.0% |
| ACTCTTCACTCGATGGGCAA+TGG | - | chr4.2:10193736-10193755 | None:intergenic | 50.0% | |
| ATGAAATGCCTGCACCTGCA+TGG | + | chr4.2:10194895-10194914 | MS.gene58170:intron | 50.0% | |
| ATTGCCCATCGAGTGAAGAG+TGG | + | chr4.2:10193735-10193754 | MS.gene58170:CDS | 50.0% | |
| CATCTCTAGCCATCCTTGCA+AGG | - | chr4.2:10194431-10194450 | None:intergenic | 50.0% | |
| CTCCACTCAACAGACCGAAA+TGG | - | chr4.2:10192954-10192973 | None:intergenic | 50.0% | |
| CTTTCCCACTCTTCACTCGA+TGG | - | chr4.2:10193743-10193762 | None:intergenic | 50.0% | |
| GCCGGGACTAAAAGCAGATT+CGG | - | chr4.2:10194484-10194503 | None:intergenic | 50.0% | |
| GGCTTGCATTTGGATGTGTC+CGG | + | chr4.2:10193620-10193639 | MS.gene58170:CDS | 50.0% | |
| GGTGAAGAAATGGACCATGC+AGG | - | chr4.2:10194912-10194931 | None:intergenic | 50.0% | |
| TCGAGTGAAGAGTGGGAAAG+AGG | + | chr4.2:10193743-10193762 | MS.gene58170:CDS | 50.0% | |
| TTGCATTGAGCAGGAAGTGG+GGG | - | chr4.2:10195101-10195120 | None:intergenic | 50.0% | |
| TTGCCCATCGAGTGAAGAGT+GGG | + | chr4.2:10193736-10193755 | MS.gene58170:CDS | 50.0% | |
| ! | TGGCAGCAATGGCTTGCATT+TGG | + | chr4.2:10193610-10193629 | MS.gene58170:CDS | 50.0% |
| GAAATGGACCATGCAGGTGC+AGG | - | chr4.2:10194906-10194925 | None:intergenic | 55.0% | |
| GGGGAAGGAAGGAAGGAAGA+TGG | + | chr4.2:10194165-10194184 | MS.gene58170:CDS | 55.0% | |
| !! | GAAGAAGTTGGTGGCGGTGA+TGG | + | chr4.2:10193590-10193609 | MS.gene58170:CDS | 55.0% |
| CAGCTGGCTGCAATTGAGGG+TGG | + | chr4.2:10193092-10193111 | MS.gene58170:CDS | 60.0% | |
| ! | GGTGGCGGTGATGGCAGCAA+TGG | + | chr4.2:10193599-10193618 | MS.gene58170:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 10192603 | 10195166 | 10192603 | ID=MS.gene58170 |
| chr4.2 | mRNA | 10192603 | 10195166 | 10192603 | ID=MS.gene58170.t1;Parent=MS.gene58170 |
| chr4.2 | exon | 10192603 | 10194210 | 10192603 | ID=MS.gene58170.t1.exon1;Parent=MS.gene58170.t1 |
| chr4.2 | CDS | 10192603 | 10194210 | 10192603 | ID=cds.MS.gene58170.t1;Parent=MS.gene58170.t1 |
| chr4.2 | exon | 10194294 | 10194600 | 10194294 | ID=MS.gene58170.t1.exon2;Parent=MS.gene58170.t1 |
| chr4.2 | CDS | 10194294 | 10194600 | 10194294 | ID=cds.MS.gene58170.t1;Parent=MS.gene58170.t1 |
| chr4.2 | exon | 10195024 | 10195166 | 10195024 | ID=MS.gene58170.t1.exon3;Parent=MS.gene58170.t1 |
| chr4.2 | CDS | 10195024 | 10195166 | 10195024 | ID=cds.MS.gene58170.t1;Parent=MS.gene58170.t1 |
| Gene Sequence |
| Protein sequence |
