Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58292.t1 | XP_003609465.1 | 93.5 | 690 | 20 | 2 | 27 | 692 | 1 | 689 | 0.00E+00 | 1277.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58292.t1 | Q944B6 | 65.2 | 624 | 188 | 5 | 45 | 650 | 7 | 619 | 8.2e-232 | 804.7 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58292.t1 | G7JGK2 | 93.5 | 690 | 20 | 2 | 27 | 692 | 1 | 689 | 0.0e+00 | 1277.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene049824 | MS.gene58292 | 0.814852 | 1.25E-51 | -1.69E-46 |
MS.gene049825 | MS.gene58292 | 0.806357 | 8.56E-50 | -1.69E-46 |
MS.gene051021 | MS.gene58292 | 0.80991 | 1.50E-50 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 134 sgRNAs with CRISPR-Local
Find 209 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATATCCCTTTGTGTCTAT+TGG | 0.228324 | 8.1:+11134406 | None:intergenic |
CTCTGATGTGGCTCGGGAAT+TGG | 0.233298 | 8.1:-11134896 | MS.gene58292:CDS |
AACCATTCGGCACCCTTCTT+TGG | 0.240904 | 8.1:+11134528 | None:intergenic |
GTATGAATCTTTGTTGAATT+TGG | 0.242967 | 8.1:-11135916 | MS.gene58292:CDS |
CTCTGTACTCACCCTATGTT+TGG | 0.243282 | 8.1:-11134664 | MS.gene58292:CDS |
AAAATCGCTATTATCGGTTT+TGG | 0.250481 | 8.1:-11136521 | MS.gene58292:CDS |
GTGGAATTGAAGTGCGATTT+TGG | 0.268541 | 8.1:+11136559 | None:intergenic |
ACATACTGTTGGTAGGGTTT+TGG | 0.269241 | 8.1:-11135979 | MS.gene58292:CDS |
TGTTGAAGAAACAAGTTTCT+AGG | 0.270162 | 8.1:+11134709 | None:intergenic |
TATGTTTAATAAGAATTCTT+TGG | 0.276415 | 8.1:-11135847 | MS.gene58292:CDS |
ATATGAAACTTTATTAAGTT+TGG | 0.287803 | 8.1:-11134389 | MS.gene58292:CDS |
AAAATTGCAATCATTGGTTT+TGG | 0.292029 | 8.1:-11134994 | MS.gene58292:CDS |
TCATACCCTTTAGTATTAAT+AGG | 0.314028 | 8.1:+11135933 | None:intergenic |
AAACTCAAAATCGCTATTAT+CGG | 0.315533 | 8.1:-11136527 | MS.gene58292:CDS |
GTGCAAAGTAAAATCACTTC+TGG | 0.317402 | 8.1:+11134829 | None:intergenic |
GATAGCTTTGATCTGTACTA+TGG | 0.319128 | 8.1:-11134349 | MS.gene58292:CDS |
AAGCTCAAAATTGCAATCAT+TGG | 0.331375 | 8.1:-11135000 | MS.gene58292:CDS |
ATTTGTTCGCATCCTATGTT+TGG | 0.336142 | 8.1:-11136191 | MS.gene58292:CDS |
TCTGATGTGGCTCGGGAATT+GGG | 0.343949 | 8.1:-11134895 | MS.gene58292:CDS |
TAAGAATTCTTTGGAGATGT+TGG | 0.349313 | 8.1:-11135838 | MS.gene58292:CDS |
TATTACAGATCAAATGGTTC+TGG | 0.351997 | 8.1:-11135042 | MS.gene58292:CDS |
GAGGAAATGCGTCCGGTTCA+TGG | 0.355099 | 8.1:+11136802 | None:intergenic |
TTTGGAGATGTTGGAGAGGT+TGG | 0.355291 | 8.1:-11135829 | MS.gene58292:CDS |
CAGCCATTGCTTCCACTCTC+AGG | 0.359401 | 8.1:+11136167 | None:intergenic |
TTAAGTTTGGTGGAGAATAC+TGG | 0.361358 | 8.1:-11134376 | MS.gene58292:CDS |
GATGTTGGAGAGGTTGGATT+TGG | 0.372198 | 8.1:-11135823 | MS.gene58292:CDS |
TCGCAGAGATCATCGGCGTT+AGG | 0.389198 | 8.1:+11136386 | None:intergenic |
CGCAGAGATCATCGGCGTTA+GGG | 0.394910 | 8.1:+11136387 | None:intergenic |
CTCCGTTTGAGTCGTTGAAA+TGG | 0.411619 | 8.1:+11136296 | None:intergenic |
TTGAGCGACGGCGGAGTAAT+CGG | 0.417633 | 8.1:+11136430 | None:intergenic |
CATGGTTATTACAGATCAAA+TGG | 0.428810 | 8.1:-11135048 | MS.gene58292:CDS |
TCTGTACTCACCCTATGTTT+GGG | 0.429958 | 8.1:-11134663 | MS.gene58292:CDS |
CTTGATGTGTTTGGAAGAGA+AGG | 0.431338 | 8.1:-11136068 | MS.gene58292:CDS |
CCACTCTCTGGCCCAAACAT+AGG | 0.433260 | 8.1:+11134652 | None:intergenic |
GTGCATAGAAGAATAACTTC+AGG | 0.435524 | 8.1:+11136356 | None:intergenic |
TTCGATAGATACCATGTAAA+CGG | 0.435811 | 8.1:+11134242 | None:intergenic |
CAAATTATATCGAAATAATT+CGG | 0.437847 | 8.1:+11136209 | None:intergenic |
GTACAGAGAACATCAAAATA+AGG | 0.438400 | 8.1:+11134679 | None:intergenic |
GAGAAGTTTCTTGATGTGTT+TGG | 0.438958 | 8.1:-11136077 | MS.gene58292:CDS |
GCAACTGCAAAGATTTGATC+TGG | 0.440411 | 8.1:-11134296 | MS.gene58292:CDS |
TGAAACTTTATTAAGTTTGG+TGG | 0.443320 | 8.1:-11134386 | MS.gene58292:CDS |
GGGGAAATGGAGATGGAGAA+TGG | 0.450126 | 8.1:+11136659 | None:intergenic |
CACATGACATTTCAACCATT+CGG | 0.455410 | 8.1:+11134515 | None:intergenic |
TCATTACACATACTGTTGGT+AGG | 0.455467 | 8.1:-11135986 | MS.gene58292:CDS |
AGAATGGAAATGTAGGGTTC+AGG | 0.458510 | 8.1:+11136675 | None:intergenic |
GTCAATTGCGCGAATGGTGA+GGG | 0.458607 | 8.1:+11136607 | None:intergenic |
CTACACCTATTAATACTAAA+GGG | 0.461298 | 8.1:-11135938 | MS.gene58292:CDS |
AGCGGCATGCCAATCATGTT+CGG | 0.467134 | 8.1:+11134492 | None:intergenic |
GAATTGGGAACGATGAAACT+AGG | 0.469059 | 8.1:-11136112 | MS.gene58292:CDS |
GTGGTGGAACGGTTGAAAGA+GGG | 0.473021 | 8.1:+11136638 | None:intergenic |
TCATATAGCATCCACGGCAT+TGG | 0.473233 | 8.1:+11134123 | None:intergenic |
ACATGGTATCTATCGAAAAC+AGG | 0.478214 | 8.1:-11134236 | MS.gene58292:CDS |
GAGATGGAGAATGGAAATGT+AGG | 0.479315 | 8.1:+11136668 | None:intergenic |
TTCCATTTCAACGACTCAAA+CGG | 0.483623 | 8.1:-11136298 | MS.gene58292:CDS |
TCTACACCTATTAATACTAA+AGG | 0.484629 | 8.1:-11135939 | MS.gene58292:CDS |
CTGAGAGTGGAAGCAATGGC+TGG | 0.485617 | 8.1:-11136166 | MS.gene58292:CDS |
TGTGAGGAAGCAGTTGTTTG+AGG | 0.491108 | 8.1:-11135754 | MS.gene58292:CDS |
CTACTGTCTTCTGATTTCTC+AGG | 0.493221 | 8.1:+11134163 | None:intergenic |
CGTTGACGTTCTTTCAGTCA+AGG | 0.493383 | 8.1:-11136264 | MS.gene58292:CDS |
CACTCTCTGGCCCAAACATA+GGG | 0.495304 | 8.1:+11134653 | None:intergenic |
TCAGGCAACATAGATCTCTC+TGG | 0.497335 | 8.1:+11134181 | None:intergenic |
CATTGCCTATGCAGAGGTTG+AGG | 0.497467 | 8.1:-11134774 | MS.gene58292:CDS |
CATTACACATACTGTTGGTA+GGG | 0.500312 | 8.1:-11135985 | MS.gene58292:CDS |
CGTCAATTGCGCGAATGGTG+AGG | 0.500696 | 8.1:+11136606 | None:intergenic |
AACCGGACGCATTTCCTCTA+CGG | 0.505177 | 8.1:-11136797 | MS.gene58292:CDS |
TAGATCTCTCTGGAAAATCA+TGG | 0.506679 | 8.1:+11134191 | None:intergenic |
TCTGTAATAACCATGTAGTC+TGG | 0.508555 | 8.1:+11135056 | None:intergenic |
GACGGCGGAGTAATCGGAAC+GGG | 0.514757 | 8.1:+11136436 | None:intergenic |
TCTGCTGATGCCAGACTACA+TGG | 0.514877 | 8.1:-11135066 | MS.gene58292:CDS |
AGACTACTCTGATGTGGCTC+GGG | 0.516024 | 8.1:-11134902 | MS.gene58292:CDS |
CTAAGACAGTGTGACCTTGA+CGG | 0.516715 | 8.1:+11136465 | None:intergenic |
TTTGAACGACGGTGAGTGGA+AGG | 0.519334 | 8.1:+11136724 | None:intergenic |
GAACATGATTGGCATGCCGC+TGG | 0.521901 | 8.1:-11134490 | MS.gene58292:CDS |
AGTGGAAGCAATGGCTGGAA+AGG | 0.522855 | 8.1:-11136161 | MS.gene58292:CDS |
TAAAGAATGAGTCCATGAAC+CGG | 0.524511 | 8.1:-11136814 | MS.gene58292:CDS |
TGTCATGTGCCGAACATGAT+TGG | 0.533227 | 8.1:-11134501 | MS.gene58292:CDS |
GGTGGTGGAACGGTTGAAAG+AGG | 0.534027 | 8.1:+11136637 | None:intergenic |
TGCTGCGTCAATTGCGCGAA+TGG | 0.534393 | 8.1:+11136601 | None:intergenic |
ACGATGAAACTAGGGTTTCA+AGG | 0.536461 | 8.1:-11136103 | MS.gene58292:CDS |
AACCGTAGAGGAAATGCGTC+CGG | 0.538992 | 8.1:+11136795 | None:intergenic |
TGCATAGAAGAATAACTTCA+GGG | 0.543778 | 8.1:+11136357 | None:intergenic |
AGATGGAGAATGGAAATGTA+GGG | 0.544501 | 8.1:+11136669 | None:intergenic |
TGGTGGAACGGTTGAAAGAG+GGG | 0.545036 | 8.1:+11136639 | None:intergenic |
TTATTTGATAAAGTCAGAGT+AGG | 0.545161 | 8.1:-11134601 | MS.gene58292:CDS |
CCTATGTTTGGGCCAGAGAG+TGG | 0.548339 | 8.1:-11134652 | MS.gene58292:CDS |
CTTGTATAATATAAATGCCA+TGG | 0.549937 | 8.1:-11134320 | MS.gene58292:CDS |
AATTGGGAACGATGAAACTA+GGG | 0.555673 | 8.1:-11136111 | MS.gene58292:CDS |
CCACTCTCAGGTCCAAACAT+AGG | 0.557184 | 8.1:+11136179 | None:intergenic |
AAATCTTTGCAGTTGCTCCA+TGG | 0.565501 | 8.1:+11134303 | None:intergenic |
CAGACTACTCTGATGTGGCT+CGG | 0.566298 | 8.1:-11134903 | MS.gene58292:CDS |
TCAATTTCATATAGCATCCA+CGG | 0.574274 | 8.1:+11134117 | None:intergenic |
GATCATGATAGATATGCAGC+TGG | 0.574527 | 8.1:-11136017 | MS.gene58292:CDS |
AAGAGAAGGGTGTAGAATGG+TGG | 0.576047 | 8.1:-11136054 | MS.gene58292:CDS |
CAATTCATTACACATACTGT+TGG | 0.577842 | 8.1:-11135990 | MS.gene58292:CDS |
GTGTTCTTCGCAGAGATCAT+CGG | 0.583978 | 8.1:+11136379 | None:intergenic |
GCTTTGTGCTGTCATCCGAC+TGG | 0.586815 | 8.1:+11135019 | None:intergenic |
ATCAAATGGTTCTGGCCAGT+CGG | 0.589790 | 8.1:-11135034 | MS.gene58292:CDS |
CCTATGTTTGGACCTGAGAG+TGG | 0.590378 | 8.1:-11136179 | MS.gene58292:CDS |
GGTGGAACGGTTGAAAGAGG+GGG | 0.590460 | 8.1:+11136640 | None:intergenic |
TGGAAGAGAAGGGTGTAGAA+TGG | 0.591930 | 8.1:-11136057 | MS.gene58292:CDS |
AATTTGGTTGAGAATACTAG+TGG | 0.592301 | 8.1:-11135900 | MS.gene58292:CDS |
TTAAATCATTGCCTATGCAG+AGG | 0.592977 | 8.1:-11134780 | MS.gene58292:CDS |
GCTACCACCTTCGTCCGTCA+AGG | 0.594547 | 8.1:-11136479 | MS.gene58292:CDS |
CTTCTCCTCAACCTCTGCAT+AGG | 0.596192 | 8.1:+11134769 | None:intergenic |
GTTTGGTGGAGAATACTGGT+GGG | 0.596701 | 8.1:-11134372 | MS.gene58292:CDS |
TCACCAACCGTCAAAATGCT+CGG | 0.598728 | 8.1:-11136755 | MS.gene58292:CDS |
GCAACACCAATAGACACAAA+GGG | 0.602309 | 8.1:-11134412 | MS.gene58292:CDS |
ATTTGGTTGAGAATACTAGT+GGG | 0.602707 | 8.1:-11135899 | MS.gene58292:CDS |
AGTTTGGTGGAGAATACTGG+TGG | 0.605516 | 8.1:-11134373 | MS.gene58292:CDS |
TTCCAAAGAAGGGTGCCGAA+TGG | 0.611629 | 8.1:-11134530 | MS.gene58292:CDS |
GGCAACACCAATAGACACAA+AGG | 0.612817 | 8.1:-11134413 | MS.gene58292:CDS |
TGTAGGGTTCAGGCGAGTGG+TGG | 0.616210 | 8.1:+11136685 | None:intergenic |
CAGTTTATCACACATACCAC+AGG | 0.621402 | 8.1:-11134463 | MS.gene58292:CDS |
CTCATTTGCATGATGTTGTG+AGG | 0.622338 | 8.1:-11135770 | MS.gene58292:CDS |
ATTCTTTGGAGATGTTGGAG+AGG | 0.622927 | 8.1:-11135833 | MS.gene58292:CDS |
TCCGCCGTCGCTCAAAACAT+CGG | 0.622986 | 8.1:-11136422 | MS.gene58292:CDS |
TCAATTGCGCGAATGGTGAG+GGG | 0.623028 | 8.1:+11136608 | None:intergenic |
TTGATGTGTTTGGAAGAGAA+GGG | 0.623550 | 8.1:-11136067 | MS.gene58292:CDS |
TTTGGTTGAGAATACTAGTG+GGG | 0.627485 | 8.1:-11135898 | MS.gene58292:CDS |
AAATGTAGGGTTCAGGCGAG+TGG | 0.630231 | 8.1:+11136682 | None:intergenic |
CAGAGAACATCAAAATAAGG+TGG | 0.631350 | 8.1:+11134682 | None:intergenic |
GACGGACGAAGGTGGTAGCG+AGG | 0.642414 | 8.1:+11136483 | None:intergenic |
CGAGTGGTGGTTGAATGCGA+CGG | 0.646540 | 8.1:+11136698 | None:intergenic |
TAGAACAGACTACTCTGATG+TGG | 0.648768 | 8.1:-11134908 | MS.gene58292:CDS |
ATCATGATAGATATGCAGCT+GGG | 0.652229 | 8.1:-11136016 | MS.gene58292:CDS |
TTTGGTGGAGAATACTGGTG+GGG | 0.654521 | 8.1:-11134371 | MS.gene58292:CDS |
GGACCTGAGAGTGGAAGCAA+TGG | 0.666958 | 8.1:-11136170 | MS.gene58292:CDS |
CGACGGCGGAGTAATCGGAA+CGG | 0.668802 | 8.1:+11136435 | None:intergenic |
AGTGTGACCTTGACGGACGA+AGG | 0.671002 | 8.1:+11136472 | None:intergenic |
GTGACCTTGACGGACGAAGG+TGG | 0.676721 | 8.1:+11136475 | None:intergenic |
ATGAATACGATGAACCGTAG+AGG | 0.699040 | 8.1:+11136783 | None:intergenic |
GAGATGAATCAAGAATATTG+CGG | 0.703500 | 8.1:-11134576 | MS.gene58292:CDS |
GAAATCAGAAGACAGTAGTG+TGG | 0.713102 | 8.1:-11134158 | MS.gene58292:CDS |
TGTGATAAACTGTGATCCAG+CGG | 0.727709 | 8.1:+11134474 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | ATATGAAACTTTATTAAGTT+TGG | - | chr8.1:11136554-11136573 | MS.gene58292:CDS | 15.0% |
!! | CAAATTATATCGAAATAATT+CGG | + | chr8.1:11134737-11134756 | None:intergenic | 15.0% |
!! | TATGTTTAATAAGAATTCTT+TGG | - | chr8.1:11135096-11135115 | MS.gene58292:intron | 15.0% |
!! | CTGACTTTATCAAATAAAAA+AGG | + | chr8.1:11136339-11136358 | None:intergenic | 20.0% |
!!! | AATTTCGAGAAAAAAGTTTT+TGG | + | chr8.1:11134711-11134730 | None:intergenic | 20.0% |
!!! | ATTTCGAGAAAAAAGTTTTT+GGG | + | chr8.1:11134710-11134729 | None:intergenic | 20.0% |
!!! | ATTTTTAGAAAAACTGAAGT+TGG | - | chr8.1:11136506-11136525 | MS.gene58292:CDS | 20.0% |
!!! | GATAGTTTTGATCTTTATTA+TGG | - | chr8.1:11135067-11135086 | MS.gene58292:CDS | 20.0% |
! | AAACTCAAAATCGCTATTAT+CGG | - | chr8.1:11134416-11134435 | MS.gene58292:CDS | 25.0% |
! | AGCTTATTTCATAAATGTCA+GGG | + | chr8.1:11135485-11135504 | None:intergenic | 25.0% |
! | ATTCAAAATGAGTAACAAGT+AGG | - | chr8.1:11135735-11135754 | MS.gene58292:intron | 25.0% |
! | CTACACCTATTAATACTAAA+GGG | - | chr8.1:11135005-11135024 | MS.gene58292:CDS | 25.0% |
! | CTTGTATAATATAAATGCCA+TGG | - | chr8.1:11136623-11136642 | MS.gene58292:CDS | 25.0% |
! | GTATGAATCTTTGTTGAATT+TGG | - | chr8.1:11135027-11135046 | MS.gene58292:CDS | 25.0% |
! | TAGGTAATAATGACCATTTA+TGG | - | chr8.1:11135754-11135773 | MS.gene58292:CDS | 25.0% |
! | TCATACCCTTTAGTATTAAT+AGG | + | chr8.1:11135013-11135032 | None:intergenic | 25.0% |
! | TCTACACCTATTAATACTAA+AGG | - | chr8.1:11135004-11135023 | MS.gene58292:CDS | 25.0% |
! | TGAAACTTTATTAAGTTTGG+TGG | - | chr8.1:11136557-11136576 | MS.gene58292:CDS | 25.0% |
! | TGTTGTTCTTTCATATGAAT+TGG | - | chr8.1:11135663-11135682 | MS.gene58292:intron | 25.0% |
! | TTATTTGATAAAGTCAGAGT+AGG | - | chr8.1:11136342-11136361 | MS.gene58292:CDS | 25.0% |
! | TTTACGAAAAAGTTCGAATT+GGG | - | chr8.1:11134816-11134835 | MS.gene58292:CDS | 25.0% |
!!! | AAAATTGCAATCATTGGTTT+TGG | - | chr8.1:11135949-11135968 | MS.gene58292:CDS | 25.0% |
!!! | TTGACATTTTTTCCAAAGAA+GGG | - | chr8.1:11136403-11136422 | MS.gene58292:CDS | 25.0% |
!!! | TTTTTCTAAAAATCTTCCTG+TGG | + | chr8.1:11136499-11136518 | None:intergenic | 25.0% |
AAGCTCAAAATTGCAATCAT+TGG | - | chr8.1:11135943-11135962 | MS.gene58292:CDS | 30.0% | |
AATTTGGTTGAGAATACTAG+TGG | - | chr8.1:11135043-11135062 | MS.gene58292:CDS | 30.0% | |
ATTTGGTTGAGAATACTAGT+GGG | - | chr8.1:11135044-11135063 | MS.gene58292:CDS | 30.0% | |
CAAAAACTATTGTACGTCAT+GGG | - | chr8.1:11135992-11136011 | MS.gene58292:CDS | 30.0% | |
CAATTCATTACACATACTGT+TGG | - | chr8.1:11134953-11134972 | MS.gene58292:CDS | 30.0% | |
CAGCTTATTTCATAAATGTC+AGG | + | chr8.1:11135486-11135505 | None:intergenic | 30.0% | |
CATGGTTATTACAGATCAAA+TGG | - | chr8.1:11135895-11135914 | MS.gene58292:CDS | 30.0% | |
GAGATGAATCAAGAATATTG+CGG | - | chr8.1:11136367-11136386 | MS.gene58292:CDS | 30.0% | |
GTACAGAGAACATCAAAATA+AGG | + | chr8.1:11136267-11136286 | None:intergenic | 30.0% | |
GTTTACGAAAAAGTTCGAAT+TGG | - | chr8.1:11134815-11134834 | MS.gene58292:CDS | 30.0% | |
TATTACAGATCAAATGGTTC+TGG | - | chr8.1:11135901-11135920 | MS.gene58292:CDS | 30.0% | |
TCATATGAATTGGATATGCT+TGG | - | chr8.1:11135673-11135692 | MS.gene58292:intron | 30.0% | |
TCTTAAATGCTCTCCATAAA+TGG | + | chr8.1:11135770-11135789 | None:intergenic | 30.0% | |
TGCATAGAAGAATAACTTCA+GGG | + | chr8.1:11134589-11134608 | None:intergenic | 30.0% | |
TGTTGAAGAAACAAGTTTCT+AGG | + | chr8.1:11136237-11136256 | None:intergenic | 30.0% | |
TTCGATAGATACCATGTAAA+CGG | + | chr8.1:11136704-11136723 | None:intergenic | 30.0% | |
TTTAGAAAAACTGAAGTTGG+AGG | - | chr8.1:11136509-11136528 | MS.gene58292:CDS | 30.0% | |
! | AAATGAACACCTCTGATTTT+TGG | + | chr8.1:11135302-11135321 | None:intergenic | 30.0% |
! | ATTAAGTTGTTCATCCAAAC+AGG | + | chr8.1:11135371-11135390 | None:intergenic | 30.0% |
! | TAAGAATTCTTTGGAGATGT+TGG | - | chr8.1:11135105-11135124 | MS.gene58292:intron | 30.0% |
! | TTAAGTTGTTCATCCAAACA+GGG | + | chr8.1:11135370-11135389 | None:intergenic | 30.0% |
!!! | AAAATCGCTATTATCGGTTT+TGG | - | chr8.1:11134422-11134441 | MS.gene58292:CDS | 30.0% |
!!! | ATTATCGGTTTTGGTAACTT+CGG | - | chr8.1:11134431-11134450 | MS.gene58292:CDS | 30.0% |
!!! | CGAACTTTTTCGTAAACAAA+AGG | + | chr8.1:11134812-11134831 | None:intergenic | 30.0% |
!!! | CTTGACATTTTTTCCAAAGA+AGG | - | chr8.1:11136402-11136421 | MS.gene58292:CDS | 30.0% |
!!! | TCTGTTTTGTTATTCTTGTG+CGG | - | chr8.1:11135574-11135593 | MS.gene58292:intron | 30.0% |
!!! | TTTTGAGTTTTTGAGAGTTG+TGG | + | chr8.1:11134406-11134425 | None:intergenic | 30.0% |
!!! | TTTTGTTTTTGTTACTTGCG+AGG | - | chr8.1:11135800-11135819 | MS.gene58292:CDS | 30.0% |
AATTGGGAACGATGAAACTA+GGG | - | chr8.1:11134832-11134851 | MS.gene58292:CDS | 35.0% | |
ACATGGTATCTATCGAAAAC+AGG | - | chr8.1:11136707-11136726 | MS.gene58292:CDS | 35.0% | |
AGATGGAGAATGGAAATGTA+GGG | + | chr8.1:11134277-11134296 | None:intergenic | 35.0% | |
ATCATGATAGATATGCAGCT+GGG | - | chr8.1:11134927-11134946 | MS.gene58292:CDS | 35.0% | |
ATTTGTTCGCATCCTATGTT+TGG | - | chr8.1:11134752-11134771 | MS.gene58292:CDS | 35.0% | |
CACATGACATTTCAACCATT+CGG | + | chr8.1:11136431-11136450 | None:intergenic | 35.0% | |
CAGAGAACATCAAAATAAGG+TGG | + | chr8.1:11136264-11136283 | None:intergenic | 35.0% | |
CATTACACATACTGTTGGTA+GGG | - | chr8.1:11134958-11134977 | MS.gene58292:CDS | 35.0% | |
GAGAAGTTTCTTGATGTGTT+TGG | - | chr8.1:11134866-11134885 | MS.gene58292:CDS | 35.0% | |
GCAAAAACTATTGTACGTCA+TGG | - | chr8.1:11135991-11136010 | MS.gene58292:CDS | 35.0% | |
GTGCAAAGTAAAATCACTTC+TGG | + | chr8.1:11136117-11136136 | None:intergenic | 35.0% | |
GTGCATAGAAGAATAACTTC+AGG | + | chr8.1:11134590-11134609 | None:intergenic | 35.0% | |
TAAAGAATGAGTCCATGAAC+CGG | - | chr8.1:11134129-11134148 | MS.gene58292:CDS | 35.0% | |
TCATATCCCTTTGTGTCTAT+TGG | + | chr8.1:11136540-11136559 | None:intergenic | 35.0% | |
TCATTACACATACTGTTGGT+AGG | - | chr8.1:11134957-11134976 | MS.gene58292:CDS | 35.0% | |
TCTGTAATAACCATGTAGTC+TGG | + | chr8.1:11135890-11135909 | None:intergenic | 35.0% | |
TGTTATCCTCCAAAAATCAG+AGG | - | chr8.1:11135290-11135309 | MS.gene58292:intron | 35.0% | |
TTAAATCATTGCCTATGCAG+AGG | - | chr8.1:11136163-11136182 | MS.gene58292:CDS | 35.0% | |
TTCCATTTCAACGACTCAAA+CGG | - | chr8.1:11134645-11134664 | MS.gene58292:CDS | 35.0% | |
TTGATGTGTTTGGAAGAGAA+GGG | - | chr8.1:11134876-11134895 | MS.gene58292:CDS | 35.0% | |
TTTGGTTGAGAATACTAGTG+GGG | - | chr8.1:11135045-11135064 | MS.gene58292:CDS | 35.0% | |
! | GACGTACAATAGTTTTTGCA+AGG | + | chr8.1:11135990-11136009 | None:intergenic | 35.0% |
! | TAGATCTCTCTGGAAAATCA+TGG | + | chr8.1:11136755-11136774 | None:intergenic | 35.0% |
! | TTAAGTTTGGTGGAGAATAC+TGG | - | chr8.1:11136567-11136586 | MS.gene58292:CDS | 35.0% |
!! | GATAGCTTTGATCTGTACTA+TGG | - | chr8.1:11136594-11136613 | MS.gene58292:CDS | 35.0% |
!! | TATGCTTGGTCTTAATGTGA+TGG | - | chr8.1:11135687-11135706 | MS.gene58292:intron | 35.0% |
!!! | ATCATTGGTTTTGGCAACTT+TGG | - | chr8.1:11135958-11135977 | MS.gene58292:CDS | 35.0% |
!!! | ATTTGGCTTTTGAGGATTTG+AGG | - | chr8.1:11135137-11135156 | MS.gene58292:intron | 35.0% |
!!! | CGAGGTTGTTGTTTTAAATC+TGG | - | chr8.1:11135818-11135837 | MS.gene58292:CDS | 35.0% |
!!! | CTGTTTTGTTATTCTTGTGC+GGG | - | chr8.1:11135575-11135594 | MS.gene58292:intron | 35.0% |
AAATCTTTGCAGTTGCTCCA+TGG | + | chr8.1:11136643-11136662 | None:intergenic | 40.0% | |
AACCATGTAGTCAGAAAGCA+TGG | - | chr8.1:11135247-11135266 | MS.gene58292:intron | 40.0% | |
ACGATGAAACTAGGGTTTCA+AGG | - | chr8.1:11134840-11134859 | MS.gene58292:CDS | 40.0% | |
AGAATGGAAATGTAGGGTTC+AGG | + | chr8.1:11134271-11134290 | None:intergenic | 40.0% | |
AGTGGAAAAAATGGGTGGAA+GGG | - | chr8.1:11136309-11136328 | MS.gene58292:CDS | 40.0% | |
ATGAATACGATGAACCGTAG+AGG | + | chr8.1:11134163-11134182 | None:intergenic | 40.0% | |
ATTCTTGTGCGGGTATGATA+GGG | - | chr8.1:11135585-11135604 | MS.gene58292:intron | 40.0% | |
CAGTTTATCACACATACCAC+AGG | - | chr8.1:11136480-11136499 | MS.gene58292:CDS | 40.0% | |
CTACTGTCTTCTGATTTCTC+AGG | + | chr8.1:11136783-11136802 | None:intergenic | 40.0% | |
CTCATTTGCATGATGTTGTG+AGG | - | chr8.1:11135173-11135192 | MS.gene58292:intron | 40.0% | |
CTTGATGTGTTTGGAAGAGA+AGG | - | chr8.1:11134875-11134894 | MS.gene58292:CDS | 40.0% | |
GAAATCAGAAGACAGTAGTG+TGG | - | chr8.1:11136785-11136804 | MS.gene58292:CDS | 40.0% | |
GAATTGGGAACGATGAAACT+AGG | - | chr8.1:11134831-11134850 | MS.gene58292:CDS | 40.0% | |
GAGATGGAGAATGGAAATGT+AGG | + | chr8.1:11134278-11134297 | None:intergenic | 40.0% | |
GATCATGATAGATATGCAGC+TGG | - | chr8.1:11134926-11134945 | MS.gene58292:CDS | 40.0% | |
GCAACACCAATAGACACAAA+GGG | - | chr8.1:11136531-11136550 | MS.gene58292:CDS | 40.0% | |
GCAACTGCAAAGATTTGATC+TGG | - | chr8.1:11136647-11136666 | MS.gene58292:CDS | 40.0% | |
GCTGTAAAGGTCCAATCTTT+GGG | - | chr8.1:11135214-11135233 | MS.gene58292:intron | 40.0% | |
GTTGTTTGAGGATGCTGTAA+AGG | - | chr8.1:11135201-11135220 | MS.gene58292:intron | 40.0% | |
TAGAACAGACTACTCTGATG+TGG | - | chr8.1:11136035-11136054 | MS.gene58292:CDS | 40.0% | |
TAGTGCATTATTGCCCTGTT+TGG | - | chr8.1:11135354-11135373 | MS.gene58292:intron | 40.0% | |
TATTCTTGTGCGGGTATGAT+AGG | - | chr8.1:11135584-11135603 | MS.gene58292:intron | 40.0% | |
TCTGTACTCACCCTATGTTT+GGG | - | chr8.1:11136280-11136299 | MS.gene58292:CDS | 40.0% | |
TGCTGTAAAGGTCCAATCTT+TGG | - | chr8.1:11135213-11135232 | MS.gene58292:intron | 40.0% | |
TGTGATAAACTGTGATCCAG+CGG | + | chr8.1:11136472-11136491 | None:intergenic | 40.0% | |
TGTTATCAGCACCCAAAGAT+TGG | + | chr8.1:11135228-11135247 | None:intergenic | 40.0% | |
! | ATCTTCTTTTTCCAATGCCG+TGG | - | chr8.1:11136809-11136828 | MS.gene58292:CDS | 40.0% |
! | ATTCTTTGGAGATGTTGGAG+AGG | - | chr8.1:11135110-11135129 | MS.gene58292:intron | 40.0% |
! | CAGCTTTTTGACCGTTTACA+TGG | - | chr8.1:11136690-11136709 | MS.gene58292:CDS | 40.0% |
! | GGTCTTAATGTGATGGAACA+AGG | - | chr8.1:11135694-11135713 | MS.gene58292:intron | 40.0% |
! | GTCAGAAAGCATGGTCAAAA+TGG | - | chr8.1:11135256-11135275 | MS.gene58292:intron | 40.0% |
! | GTGGAATTGAAGTGCGATTT+TGG | + | chr8.1:11134387-11134406 | None:intergenic | 40.0% |
!! | ACATACTGTTGGTAGGGTTT+TGG | - | chr8.1:11134964-11134983 | MS.gene58292:CDS | 40.0% |
!! | CATACTGTTGGTAGGGTTTT+GGG | - | chr8.1:11134965-11134984 | MS.gene58292:CDS | 40.0% |
!! | TGAACACCTCTGATTTTTGG+AGG | + | chr8.1:11135299-11135318 | None:intergenic | 40.0% |
!!! | GGTTTTGGGTATGTTGATGT+TGG | - | chr8.1:11134979-11134998 | MS.gene58292:CDS | 40.0% |
CAGAGAGTGGAAAAAATGGG+TGG | - | chr8.1:11136304-11136323 | MS.gene58292:CDS | 45.0% | |
CGTTGACGTTCTTTCAGTCA+AGG | - | chr8.1:11134679-11134698 | MS.gene58292:CDS | 45.0% | |
CTAAGACAGTGTGACCTTGA+CGG | + | chr8.1:11134481-11134500 | None:intergenic | 45.0% | |
CTCCGTTTGAGTCGTTGAAA+TGG | + | chr8.1:11134650-11134669 | None:intergenic | 45.0% | |
CTCTGTACTCACCCTATGTT+TGG | - | chr8.1:11136279-11136298 | MS.gene58292:CDS | 45.0% | |
GACCATGCTTTCTGACTACA+TGG | + | chr8.1:11135252-11135271 | None:intergenic | 45.0% | |
GAGTGGAAAAAATGGGTGGA+AGG | - | chr8.1:11136308-11136327 | MS.gene58292:CDS | 45.0% | |
GATGTTGGAGAGGTTGGATT+TGG | - | chr8.1:11135120-11135139 | MS.gene58292:intron | 45.0% | |
GGCAACACCAATAGACACAA+AGG | - | chr8.1:11136530-11136549 | MS.gene58292:CDS | 45.0% | |
GGCCAGAGAGTGGAAAAAAT+GGG | - | chr8.1:11136301-11136320 | MS.gene58292:CDS | 45.0% | |
GTGTTCTTCGCAGAGATCAT+CGG | + | chr8.1:11134567-11134586 | None:intergenic | 45.0% | |
TCACCAACCGTCAAAATGCT+CGG | - | chr8.1:11134188-11134207 | MS.gene58292:CDS | 45.0% | |
TCAGGCAACATAGATCTCTC+TGG | + | chr8.1:11136765-11136784 | None:intergenic | 45.0% | |
TCATATAGCATCCACGGCAT+TGG | + | chr8.1:11136823-11136842 | None:intergenic | 45.0% | |
TGTCATGTGCCGAACATGAT+TGG | - | chr8.1:11136442-11136461 | MS.gene58292:CDS | 45.0% | |
TGTGAGGAAGCAGTTGTTTG+AGG | - | chr8.1:11135189-11135208 | MS.gene58292:intron | 45.0% | |
TTCTTGTGCGGGTATGATAG+GGG | - | chr8.1:11135586-11135605 | MS.gene58292:intron | 45.0% | |
TTTGGAGATGTTGGAGAGGT+TGG | - | chr8.1:11135114-11135133 | MS.gene58292:intron | 45.0% | |
TTTGGTGGAGAATACTGGTG+GGG | - | chr8.1:11136572-11136591 | MS.gene58292:CDS | 45.0% | |
! | AAGAGAAGGGTGTAGAATGG+TGG | - | chr8.1:11134889-11134908 | MS.gene58292:CDS | 45.0% |
! | AGTTTGGTGGAGAATACTGG+TGG | - | chr8.1:11136570-11136589 | MS.gene58292:CDS | 45.0% |
! | GTTTGGTGGAGAATACTGGT+GGG | - | chr8.1:11136571-11136590 | MS.gene58292:CDS | 45.0% |
! | TGAAACGCCGAGCATTTTGA+CGG | + | chr8.1:11134198-11134217 | None:intergenic | 45.0% |
! | TGGAAGAGAAGGGTGTAGAA+TGG | - | chr8.1:11134886-11134905 | MS.gene58292:CDS | 45.0% |
!! | ATCAAATGGTTCTGGCCAGT+CGG | - | chr8.1:11135909-11135928 | MS.gene58292:CDS | 45.0% |
!!! | AGCATTTTGACGGTTGGTGA+TGG | + | chr8.1:11134188-11134207 | None:intergenic | 45.0% |
!!! | CACCCATTTTTTCCACTCTC+TGG | + | chr8.1:11136306-11136325 | None:intergenic | 45.0% |
!!! | CATTTTGACGGTTGGTGATG+GGG | + | chr8.1:11134186-11134205 | None:intergenic | 45.0% |
!!! | GAGGTTGGATTTGGCTTTTG+AGG | - | chr8.1:11135129-11135148 | MS.gene58292:intron | 45.0% |
!!! | GCATTTTGACGGTTGGTGAT+GGG | + | chr8.1:11134187-11134206 | None:intergenic | 45.0% |
AAATGTAGGGTTCAGGCGAG+TGG | + | chr8.1:11134264-11134283 | None:intergenic | 50.0% | |
AACCATTCGGCACCCTTCTT+TGG | + | chr8.1:11136418-11136437 | None:intergenic | 50.0% | |
AACCGGACGCATTTCCTCTA+CGG | - | chr8.1:11134146-11134165 | MS.gene58292:CDS | 50.0% | |
AACCGTAGAGGAAATGCGTC+CGG | + | chr8.1:11134151-11134170 | None:intergenic | 50.0% | |
ACGGTTGAAAGAGGGGGAAA+TGG | + | chr8.1:11134300-11134319 | None:intergenic | 50.0% | |
AGACTACTCTGATGTGGCTC+GGG | - | chr8.1:11136041-11136060 | MS.gene58292:CDS | 50.0% | |
AGCGGCATGCCAATCATGTT+CGG | + | chr8.1:11136454-11136473 | None:intergenic | 50.0% | |
AGTGGAAGCAATGGCTGGAA+AGG | - | chr8.1:11134782-11134801 | MS.gene58292:CDS | 50.0% | |
CACTCTCTGGCCCAAACATA+GGG | + | chr8.1:11136293-11136312 | None:intergenic | 50.0% | |
CAGACTACTCTGATGTGGCT+CGG | - | chr8.1:11136040-11136059 | MS.gene58292:CDS | 50.0% | |
CATTGCCTATGCAGAGGTTG+AGG | - | chr8.1:11136169-11136188 | MS.gene58292:CDS | 50.0% | |
CCACTCTCAGGTCCAAACAT+AGG | + | chr8.1:11134767-11134786 | None:intergenic | 50.0% | |
CCTATGTTTGGACCTGAGAG+TGG | - | chr8.1:11134764-11134783 | MS.gene58292:CDS | 50.0% | |
CTTCTCCTCAACCTCTGCAT+AGG | + | chr8.1:11136177-11136196 | None:intergenic | 50.0% | |
GAAAGAGGGGGAAATGGAGA+TGG | + | chr8.1:11134294-11134313 | None:intergenic | 50.0% | |
GGGCCAGAGAGTGGAAAAAA+TGG | - | chr8.1:11136300-11136319 | MS.gene58292:CDS | 50.0% | |
GGGGAAATGGAGATGGAGAA+TGG | + | chr8.1:11134287-11134306 | None:intergenic | 50.0% | |
GTCAATTGCGCGAATGGTGA+GGG | + | chr8.1:11134339-11134358 | None:intergenic | 50.0% | |
TCAATTGCGCGAATGGTGAG+GGG | + | chr8.1:11134338-11134357 | None:intergenic | 50.0% | |
TCTGCTGATGCCAGACTACA+TGG | - | chr8.1:11135877-11135896 | MS.gene58292:CDS | 50.0% | |
TCTTGTGCGGGTATGATAGG+GGG | - | chr8.1:11135587-11135606 | MS.gene58292:intron | 50.0% | |
TGGTGGAACGGTTGAAAGAG+GGG | + | chr8.1:11134307-11134326 | None:intergenic | 50.0% | |
TTTGAACGACGGTGAGTGGA+AGG | + | chr8.1:11134222-11134241 | None:intergenic | 50.0% | |
! | GTGGTGGAACGGTTGAAAGA+GGG | + | chr8.1:11134308-11134327 | None:intergenic | 50.0% |
! | TCTGATGTGGCTCGGGAATT+GGG | - | chr8.1:11136048-11136067 | MS.gene58292:CDS | 50.0% |
!! | AATGGTGAGGGGTTTTGTGG+TGG | + | chr8.1:11134327-11134346 | None:intergenic | 50.0% |
!! | TTCCAAAGAAGGGTGCCGAA+TGG | - | chr8.1:11136413-11136432 | MS.gene58292:CDS | 50.0% |
CAGCCATTGCTTCCACTCTC+AGG | + | chr8.1:11134779-11134798 | None:intergenic | 55.0% | |
CCACTCTCTGGCCCAAACAT+AGG | + | chr8.1:11136294-11136313 | None:intergenic | 55.0% | |
CCTATGTTTGGGCCAGAGAG+TGG | - | chr8.1:11136291-11136310 | MS.gene58292:CDS | 55.0% | |
CGAGTGGTGGTTGAATGCGA+CGG | + | chr8.1:11134248-11134267 | None:intergenic | 55.0% | |
CGCAGAGATCATCGGCGTTA+GGG | + | chr8.1:11134559-11134578 | None:intergenic | 55.0% | |
CGTCAATTGCGCGAATGGTG+AGG | + | chr8.1:11134340-11134359 | None:intergenic | 55.0% | |
CTGAGAGTGGAAGCAATGGC+TGG | - | chr8.1:11134777-11134796 | MS.gene58292:CDS | 55.0% | |
GAACATGATTGGCATGCCGC+TGG | - | chr8.1:11136453-11136472 | MS.gene58292:CDS | 55.0% | |
GAGGAAATGCGTCCGGTTCA+TGG | + | chr8.1:11134144-11134163 | None:intergenic | 55.0% | |
GCTTTGTGCTGTCATCCGAC+TGG | + | chr8.1:11135927-11135946 | None:intergenic | 55.0% | |
GGACCTGAGAGTGGAAGCAA+TGG | - | chr8.1:11134773-11134792 | MS.gene58292:CDS | 55.0% | |
GGTGGAACGGTTGAAAGAGG+GGG | + | chr8.1:11134306-11134325 | None:intergenic | 55.0% | |
TCCGCCGTCGCTCAAAACAT+CGG | - | chr8.1:11134521-11134540 | MS.gene58292:CDS | 55.0% | |
TCGCAGAGATCATCGGCGTT+AGG | + | chr8.1:11134560-11134579 | None:intergenic | 55.0% | |
TGCTGCGTCAATTGCGCGAA+TGG | + | chr8.1:11134345-11134364 | None:intergenic | 55.0% | |
TTGAGCGACGGCGGAGTAAT+CGG | + | chr8.1:11134516-11134535 | None:intergenic | 55.0% | |
! | AGTGTGACCTTGACGGACGA+AGG | + | chr8.1:11134474-11134493 | None:intergenic | 55.0% |
! | CTCTGATGTGGCTCGGGAAT+TGG | - | chr8.1:11136047-11136066 | MS.gene58292:CDS | 55.0% |
! | GCGAATGGTGAGGGGTTTTG+TGG | + | chr8.1:11134330-11134349 | None:intergenic | 55.0% |
!! | ACGCCGAGCATTTTGACGGT+TGG | + | chr8.1:11134194-11134213 | None:intergenic | 55.0% |
!! | GACGCCGATGTTTTGAGCGA+CGG | + | chr8.1:11134528-11134547 | None:intergenic | 55.0% |
!! | GCGTTTTGAACGACGGTGAG+TGG | + | chr8.1:11134226-11134245 | None:intergenic | 55.0% |
!! | GGTGGTGGAACGGTTGAAAG+AGG | + | chr8.1:11134309-11134328 | None:intergenic | 55.0% |
!! | TGCGACGGCGTTTTGAACGA+CGG | + | chr8.1:11134233-11134252 | None:intergenic | 55.0% |
!!! | GGGGTTTTGTGGTGGTGGAA+CGG | + | chr8.1:11134319-11134338 | None:intergenic | 55.0% |
CGACGGCGGAGTAATCGGAA+CGG | + | chr8.1:11134511-11134530 | None:intergenic | 60.0% | |
GACGGCGGAGTAATCGGAAC+GGG | + | chr8.1:11134510-11134529 | None:intergenic | 60.0% | |
GCTACCACCTTCGTCCGTCA+AGG | - | chr8.1:11134464-11134483 | MS.gene58292:CDS | 60.0% | |
TGCGGGTATGATAGGGGGAG+TGG | - | chr8.1:11135592-11135611 | MS.gene58292:intron | 60.0% | |
TGTAGGGTTCAGGCGAGTGG+TGG | + | chr8.1:11134261-11134280 | None:intergenic | 60.0% | |
! | GTGACCTTGACGGACGAAGG+TGG | + | chr8.1:11134471-11134490 | None:intergenic | 60.0% |
!! | GCCGATGTTTTGAGCGACGG+CGG | + | chr8.1:11134525-11134544 | None:intergenic | 60.0% |
!! | GGTGAGGGGTTTTGTGGTGG+TGG | + | chr8.1:11134324-11134343 | None:intergenic | 60.0% |
! | GACGGACGAAGGTGGTAGCG+AGG | + | chr8.1:11134463-11134482 | None:intergenic | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 11134123 | 11136842 | 11134123 | ID=MS.gene58292 |
chr8.1 | mRNA | 11134123 | 11136842 | 11134123 | ID=MS.gene58292.t1;Parent=MS.gene58292 |
chr8.1 | exon | 11135749 | 11136842 | 11135749 | ID=MS.gene58292.t1.exon1;Parent=MS.gene58292.t1 |
chr8.1 | CDS | 11135749 | 11136842 | 11135749 | ID=cds.MS.gene58292.t1;Parent=MS.gene58292.t1 |
chr8.1 | exon | 11134123 | 11135112 | 11134123 | ID=MS.gene58292.t1.exon2;Parent=MS.gene58292.t1 |
chr8.1 | CDS | 11134123 | 11135112 | 11134123 | ID=cds.MS.gene58292.t1;Parent=MS.gene58292.t1 |
Gene Sequence |
Protein sequence |