AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene049825


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049825.t1 MTR_4g061700 95.136 514 4 1 1 514 870 1362 0.0 973
MS.gene049825.t1 MTR_4g061800 86.460 517 51 2 1 514 871 1371 0.0 883
MS.gene049825.t1 MTR_5g023020 30.958 407 230 7 149 507 1056 1459 1.93e-52 192
MS.gene049825.t1 MTR_4g086290 37.600 125 77 1 139 262 1079 1203 8.53e-18 87.8
MS.gene049825.t1 MTR_4g086290 33.898 118 77 1 397 514 1509 1625 2.31e-16 83.2
MS.gene049825.t1 MTR_4g086290 44.211 95 52 1 139 232 1079 1173 1.75e-16 83.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene049825.t1 AT5G60040 51.938 516 219 6 1 514 872 1360 1.50e-158 486
MS.gene049825.t1 AT5G60040 50.775 516 223 8 1 514 889 1375 1.13e-151 468
MS.gene049825.t1 AT4G35800 31.477 413 228 8 149 511 1057 1464 3.35e-53 194
MS.gene049825.t1 AT4G35800 31.477 413 228 8 149 511 1057 1464 3.35e-53 194
MS.gene049825.t1 AT3G57660 31.071 280 133 9 1 271 1019 1247 3.94e-26 113
MS.gene049825.t1 AT3G57660 30.857 175 113 3 341 514 1487 1654 1.13e-16 84.3
MS.gene049825.t1 AT3G57660 31.071 280 133 9 1 271 1032 1260 4.73e-26 113
MS.gene049825.t1 AT3G57660 30.857 175 113 3 341 514 1500 1667 1.22e-16 84.0

Find 88 sgRNAs with CRISPR-Local

Find 369 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTGCCATAACCTCTTTA+AGG 0.113717 4.4:-43533160 None:intergenic
TTTGCAGAATGTTAAGATTT+TGG 0.161242 4.4:+43532200 MS.gene049825:intron
AATTGATTCTTTCACAATAT+TGG 0.204750 4.4:-43532063 None:intergenic
AATAACCGATCAAAATTTAA+TGG 0.210784 4.4:-43528307 None:intergenic
CATTGAACTGATGCACATTC+TGG 0.222910 4.4:+43533220 MS.gene049825:CDS
TGAGATTATTAAGTTGAAAA+AGG 0.235822 4.4:-43532272 None:intergenic
AACTTTCTTCCGAAGATATC+TGG 0.259016 4.4:+43528709 MS.gene049825:CDS
CGCATCATAGAAATAATAAA+TGG 0.278334 4.4:+43530446 MS.gene049825:CDS
TTCACTTCGGCTAGACCCTT+GGG 0.332446 4.4:-43532247 None:intergenic
GGAACTCCAATTGGTGCAAT+TGG 0.343575 4.4:+43530204 MS.gene049825:CDS
AATGATCGGTGTCTTAATAT+TGG 0.345118 4.4:-43530474 None:intergenic
CAATCACTCACTCCTTCAAT+TGG 0.356642 4.4:-43533592 None:intergenic
ATTCCAGTGCCTATATGAAT+AGG 0.375180 4.4:-43533631 None:intergenic
CTGATCTATGATACCATATC+TGG 0.377324 4.4:-43533255 None:intergenic
CACGAGAAGCTTTCAGAAGT+TGG 0.390918 4.4:+43528532 MS.gene049825:CDS
CAAGGGCCTTAAAGAGGTTA+TGG 0.402001 4.4:+43533154 MS.gene049825:CDS
ATGGCAATTGAAGGGGTTGA+TGG 0.404455 4.4:+43533173 MS.gene049825:CDS
TAGCAGATATGATGACTGTC+AGG 0.404647 4.4:+43533336 MS.gene049825:CDS
TATCTGCTAGAAGCATAATA+TGG 0.411824 4.4:-43533322 None:intergenic
CGATGCATCCTTGCGTGGGA+AGG 0.413910 4.4:+43533564 MS.gene049825:CDS
GGAATTGAGGCTGCCAGATA+TGG 0.414804 4.4:+43533242 MS.gene049825:CDS
TCAAACTAGGGTCAAGTCCT+TGG 0.415181 4.4:+43533460 MS.gene049825:intron
ATCTGAGAAGTACACATTAC+TGG 0.415625 4.4:+43532503 MS.gene049825:CDS
GTTCACTTCGGCTAGACCCT+TGG 0.417101 4.4:-43532248 None:intergenic
ATGGGTAAACCTATTCATAT+AGG 0.444116 4.4:+43533622 MS.gene049825:CDS
TGAGCTCCAATTGCACCAAT+TGG 0.449787 4.4:-43530210 None:intergenic
ATCGCCATCAGCGGGACATA+TGG 0.453820 4.4:-43528470 None:intergenic
CTGTTATTAGATGTTACACT+TGG 0.454857 4.4:+43530416 MS.gene049825:intron
ATTGAACTGATGCACATTCT+GGG 0.456174 4.4:+43533221 MS.gene049825:CDS
AGTGAGTGATTGCATAATCA+TGG 0.458045 4.4:+43533603 MS.gene049825:CDS
AGTTGGTATGTCTATGTTAG+TGG 0.458116 4.4:+43528549 MS.gene049825:CDS
TTCAAAGTCATCTGAGTCCC+AGG 0.463634 4.4:-43530246 None:intergenic
ATTGAGGCTGGAACTCCAAT+TGG 0.466178 4.4:+43530195 MS.gene049825:CDS
AAAGAGGTTATGGCAATTGA+AGG 0.469543 4.4:+43533164 MS.gene049825:CDS
ACTACCATTGGTATCTCTTA+CGG 0.497180 4.4:-43528218 None:intergenic
GCTCATAGTATTGGAGAACC+TGG 0.500736 4.4:+43530228 MS.gene049825:CDS
AAGACATGGAATTCAAAAGA+TGG 0.509948 4.4:+43533489 MS.gene049825:CDS
CATCAGCAAGGGCCTTAAAG+AGG 0.511065 4.4:+43533148 MS.gene049825:intron
GCAATTGGAGCTCATAGTAT+TGG 0.512888 4.4:+43530219 MS.gene049825:CDS
CGACTGATTCCAGATATCTT+CGG 0.514797 4.4:-43528718 None:intergenic
TTCCATGTCTTGTCATTCCA+AGG 0.514932 4.4:-43533477 None:intergenic
AAACTGAACAATACTACCAT+TGG 0.516000 4.4:-43528230 None:intergenic
AAACCTATTCATATAGGCAC+TGG 0.516311 4.4:+43533628 MS.gene049825:CDS
AAGAGGTTATGGCAATTGAA+GGG 0.518619 4.4:+43533165 MS.gene049825:CDS
ATGGATCCAGCAGGCATGGA+AGG 0.520507 4.4:+43528271 MS.gene049825:CDS
TTCAATGATATGATTAGTAA+CGG 0.524631 4.4:-43533204 None:intergenic
GGGAAGGGTGACCCAATTGA+AGG 0.525487 4.4:+43533580 MS.gene049825:CDS
GCTTCCATCGGTTGTAGTGA+AGG 0.526606 4.4:+43532302 MS.gene049825:CDS
GGACATGGGCATAATCGAAA+AGG 0.532534 4.4:+43532022 MS.gene049825:CDS
TGGCAATTGAAGGGGTTGAT+GGG 0.534884 4.4:+43533174 MS.gene049825:CDS
AGAGGTTATGGCAATTGAAG+GGG 0.537047 4.4:+43533166 MS.gene049825:CDS
AATCACTCACTCCTTCAATT+GGG 0.539564 4.4:-43533591 None:intergenic
GATGCATCCTTGCGTGGGAA+GGG 0.543229 4.4:+43533565 MS.gene049825:CDS
TGGCATGGATCCAGCAGGCA+TGG 0.543355 4.4:+43528267 MS.gene049825:CDS
ATTACATCATCGCCATCAGC+GGG 0.556894 4.4:-43528478 None:intergenic
AAAACTGCAAAGATAGTGAA+AGG 0.562783 4.4:+43530527 MS.gene049825:CDS
TTGTTATGGTGATGATGGCA+TGG 0.562940 4.4:+43528252 MS.gene049825:CDS
GATGCACATTCTGGGAATTG+AGG 0.567345 4.4:+43533229 MS.gene049825:CDS
TCGGTTATTTCTCAGAAGCA+AGG 0.578203 4.4:+43528321 MS.gene049825:CDS
AGACATGGAATTCAAAAGAT+GGG 0.582691 4.4:+43533490 MS.gene049825:CDS
GTGAGTGATTGCATAATCAT+GGG 0.585359 4.4:+43533604 MS.gene049825:CDS
GTCCTTGGAATGACAAGACA+TGG 0.589188 4.4:+43533475 MS.gene049825:CDS
TGGGTCACCCTTCCCACGCA+AGG 0.590838 4.4:-43533572 None:intergenic
AAGTACACATTACTGGCGGA+AGG 0.592200 4.4:+43532510 MS.gene049825:CDS
TCAAGTATTGCAGTAATGAT+CGG 0.594138 4.4:-43530488 None:intergenic
CATTACTGCAATACTTGAGA+GGG 0.596964 4.4:+43530493 MS.gene049825:CDS
TAGGCCATATGTCCCGCTGA+TGG 0.597372 4.4:+43528466 MS.gene049825:intron
AAGGATATAACATCAGACAT+AGG 0.597965 4.4:+43528589 MS.gene049825:CDS
TTTATTATTTCTATGATGCG+AGG 0.606008 4.4:-43530443 None:intergenic
AATACCTTCACTACAACCGA+TGG 0.609128 4.4:-43532306 None:intergenic
AAGCTTCAAGTGGAACCCCA+AGG 0.610926 4.4:+43532231 MS.gene049825:CDS
TCATTACTGCAATACTTGAG+AGG 0.612926 4.4:+43530492 MS.gene049825:CDS
AGCTTCAAGTGGAACCCCAA+GGG 0.615564 4.4:+43532232 MS.gene049825:CDS
AATCAGTCGCAGACAACTAG+AGG 0.617850 4.4:+43528732 MS.gene049825:CDS
ATGGGCATAATCGAAAAGGC+AGG 0.620316 4.4:+43532026 MS.gene049825:CDS
TCACTTCGGCTAGACCCTTG+GGG 0.622915 4.4:-43532246 None:intergenic
CTCATAGTATTGGAGAACCT+GGG 0.631808 4.4:+43530229 MS.gene049825:CDS
GATTACATCATCGCCATCAG+CGG 0.632988 4.4:-43528479 None:intergenic
CAGTATACAATGAAACAGCA+TGG 0.633424 4.4:+43533281 MS.gene049825:CDS
GATGATGGCATGGATCCAGC+AGG 0.637361 4.4:+43528262 MS.gene049825:CDS
AGCAGATATGATGACTGTCA+GGG 0.641689 4.4:+43533337 MS.gene049825:CDS
AGTACACATTACTGGCGGAA+GGG 0.646891 4.4:+43532511 MS.gene049825:CDS
GGAGAAGAATGCTTCAGACA+AGG 0.669354 4.4:+43528570 MS.gene049825:CDS
AAAACTGAAGTTGAAGCCAG+AGG 0.675074 4.4:+43532097 MS.gene049825:CDS
TATAGGCACTGGAATGATCG+AGG 0.686172 4.4:+43533639 MS.gene049825:CDS
GAATGATCGAGGTCAAACAA+AGG 0.700498 4.4:+43533650 MS.gene049825:CDS
TGAGAAGTACACATTACTGG+CGG 0.721019 4.4:+43532506 MS.gene049825:CDS
TACACCGTAAGAGATACCAA+TGG 0.742416 4.4:+43528214 MS.gene049825:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATTATTATTATTATAATAAA+AGG + chr4.4:43529668-43529687 MS.gene049825:intron 0.0%
!! AAAAAAATAAAAACAAATGA+TGG + chr4.4:43532474-43532493 MS.gene049825:CDS 10.0%
!! GTTATTTGAAAATTACTATA+AGG + chr4.4:43533363-43533382 MS.gene049825:intron 15.0%
!! TTATCGTTTAAAAAAAATTG+AGG + chr4.4:43530179-43530198 MS.gene049825:CDS 15.0%
!! AATAACCGATCAAAATTTAA+TGG - chr4.4:43528310-43528329 None:intergenic 20.0%
!! ACAAATATACATTCTTTACA+TGG - chr4.4:43531234-43531253 None:intergenic 20.0%
!! ACAATTAATGATTTATCCAT+GGG + chr4.4:43530814-43530833 MS.gene049825:intron 20.0%
!! AGTAACATAATTAAATACAG+AGG - chr4.4:43528933-43528952 None:intergenic 20.0%
!! ATATAAATATACTATCAGTG+TGG - chr4.4:43530615-43530634 None:intergenic 20.0%
!! ATTAATGTGAAATGAAAATC+AGG + chr4.4:43532839-43532858 MS.gene049825:intron 20.0%
!! ATTATGTATTTCAAATGAGA+AGG + chr4.4:43529504-43529523 MS.gene049825:intron 20.0%
!! CTTTCATAATATAAAGTGAT+GGG + chr4.4:43532778-43532797 MS.gene049825:intron 20.0%
!! GAAACTAAATAAAACAACAA+AGG - chr4.4:43528358-43528377 None:intergenic 20.0%
!! GTAACATAATTAAATACAGA+GGG - chr4.4:43528932-43528951 None:intergenic 20.0%
!! TAACATCTAATAACAGATTA+AGG - chr4.4:43530412-43530431 None:intergenic 20.0%
!! TACTTATAATAAAATACGGA+GGG + chr4.4:43529178-43529197 MS.gene049825:intron 20.0%
!! TATATCACTCCTTAAATTAA+GGG - chr4.4:43529566-43529585 None:intergenic 20.0%
!! TCTTTCATAATATAAAGTGA+TGG + chr4.4:43532777-43532796 MS.gene049825:intron 20.0%
!! TGCATAGAAAAAACAAATTT+AGG + chr4.4:43530551-43530570 MS.gene049825:CDS 20.0%
!! TTAAAAACATACTGAACAAA+AGG + chr4.4:43529759-43529778 MS.gene049825:intron 20.0%
!! TTACTTATAATAAAATACGG+AGG + chr4.4:43529177-43529196 MS.gene049825:intron 20.0%
!! TTATATCACTCCTTAAATTA+AGG - chr4.4:43529567-43529586 None:intergenic 20.0%
!! TTATGTATTTCAAATGAGAA+GGG + chr4.4:43529505-43529524 MS.gene049825:intron 20.0%
!! TTATGTGATTTATCAAACTA+GGG + chr4.4:43533448-43533467 MS.gene049825:intron 20.0%
!! TTCAATGATATGATTAGTAA+CGG - chr4.4:43533207-43533226 None:intergenic 20.0%
!! TTCACATTAATCTGAATATA+CGG - chr4.4:43532830-43532849 None:intergenic 20.0%
!! TTGCAAAGATAAATTATGAA+TGG - chr4.4:43529114-43529133 None:intergenic 20.0%
!! TTTATGTGATTTATCAAACT+AGG + chr4.4:43533447-43533466 MS.gene049825:intron 20.0%
!!! AAAAAAGCTTTGAATATTAG+AGG - chr4.4:43532171-43532190 None:intergenic 20.0%
!!! AATTGATTCTTTCACAATAT+TGG - chr4.4:43532066-43532085 None:intergenic 20.0%
!!! ACAACATTAACAAAAAGTAT+CGG + chr4.4:43528661-43528680 MS.gene049825:CDS 20.0%
!!! ATGATTGATAACTAATCTTT+TGG - chr4.4:43531739-43531758 None:intergenic 20.0%
!!! ATGTATTTGTTTTTCAATGA+CGG + chr4.4:43529377-43529396 MS.gene049825:intron 20.0%
!!! CTTTGTATTTTATATTCAGA+TGG + chr4.4:43532387-43532406 MS.gene049825:intron 20.0%
!!! GAAAACCATTAAATTTTGAT+CGG + chr4.4:43528302-43528321 MS.gene049825:CDS 20.0%
!!! GACTTGTAATTTAAACTTTT+TGG - chr4.4:43533389-43533408 None:intergenic 20.0%
!!! TGAGATTATTAAGTTGAAAA+AGG - chr4.4:43532275-43532294 None:intergenic 20.0%
! AAACCTTAAAAACAAACAGA+AGG - chr4.4:43530050-43530069 None:intergenic 25.0%
! AAAGAAGAGAGAGTAATAAA+AGG - chr4.4:43529039-43529058 None:intergenic 25.0%
! AACTAATATGATCCATATGT+GGG + chr4.4:43531020-43531039 MS.gene049825:intron 25.0%
! AAGTACATAACAAAATACAG+AGG - chr4.4:43532546-43532565 None:intergenic 25.0%
! AATAAAAACAGCATATGTGA+CGG - chr4.4:43530130-43530149 None:intergenic 25.0%
! ACAAAATTAGAATGACCAAA+TGG - chr4.4:43528812-43528831 None:intergenic 25.0%
! ACACAGTTAGAATAATACTT+TGG - chr4.4:43531501-43531520 None:intergenic 25.0%
! AGAGAGTAATAAAAGGTAAA+GGG - chr4.4:43529032-43529051 None:intergenic 25.0%
! AGTTCTTCTTCATACATATT+TGG - chr4.4:43532751-43532770 None:intergenic 25.0%
! ATATCACTCCTTAAATTAAG+GGG - chr4.4:43529565-43529584 None:intergenic 25.0%
! ATATGTGGGAAAAATAAACT+AGG + chr4.4:43531105-43531124 MS.gene049825:intron 25.0%
! ATATTTATCACAAACACACA+TGG - chr4.4:43533412-43533431 None:intergenic 25.0%
! ATTATCCCACATTAATAACA+TGG - chr4.4:43529082-43529101 None:intergenic 25.0%
! CACAATTAATGATTTATCCA+TGG + chr4.4:43530813-43530832 MS.gene049825:intron 25.0%
! CGCATCATAGAAATAATAAA+TGG + chr4.4:43530446-43530465 MS.gene049825:CDS 25.0%
! CTAATTAACCCCTTAATTTA+AGG + chr4.4:43529554-43529573 MS.gene049825:intron 25.0%
! CTTTCACTTTCTTAGAATTT+GGG - chr4.4:43529329-43529348 None:intergenic 25.0%
! GAACATTAATGATCAACATA+TGG - chr4.4:43530328-43530347 None:intergenic 25.0%
! TATTTATCACAAACACACAT+GGG - chr4.4:43533411-43533430 None:intergenic 25.0%
! TCTCTTTATAAACTCTAGTT+AGG - chr4.4:43529257-43529276 None:intergenic 25.0%
! TGATAACTAAGATACAATTC+AGG - chr4.4:43531701-43531720 None:intergenic 25.0%
! TGATACAATCTTAGAATTTG+TGG + chr4.4:43531407-43531426 MS.gene049825:intron 25.0%
! TTATCCCACATTAATAACAT+GGG - chr4.4:43529081-43529100 None:intergenic 25.0%
! TTGGAATTGTGTTTATAAGT+GGG - chr4.4:43531482-43531501 None:intergenic 25.0%
! TTTCACTTTCTTAGAATTTG+GGG - chr4.4:43529328-43529347 None:intergenic 25.0%
! TTTCATGTGTTTGTTTGTAT+TGG + chr4.4:43530091-43530110 MS.gene049825:intron 25.0%
!! ATCTTTTGGTGGAAAAATAA+TGG - chr4.4:43531725-43531744 None:intergenic 25.0%
!! GTTGTATTTTCTCCTATAAA+AGG - chr4.4:43529535-43529554 None:intergenic 25.0%
!! TTGAATATTAGAGGCATAAA+TGG - chr4.4:43532162-43532181 None:intergenic 25.0%
!! TTTGCAGAATGTTAAGATTT+TGG + chr4.4:43532200-43532219 MS.gene049825:intron 25.0%
!! TTTGGAATTGTGTTTATAAG+TGG - chr4.4:43531483-43531502 None:intergenic 25.0%
!! TTTTCCCATGTTATTAATGT+GGG + chr4.4:43529074-43529093 MS.gene049825:intron 25.0%
!! TTTTTCCCATGTTATTAATG+TGG + chr4.4:43529073-43529092 MS.gene049825:intron 25.0%
!!! AACTAGAGGTATTTATTTGA+TGG + chr4.4:43528746-43528765 MS.gene049825:intron 25.0%
!!! AGTATTGTTCAGTTTTGTTA+TGG + chr4.4:43528238-43528257 MS.gene049825:CDS 25.0%
!!! ATTGATAACTAATCTTTTGG+TGG - chr4.4:43531736-43531755 None:intergenic 25.0%
!!! CATTAGTTTTTCTTGATTGA+GGG + chr4.4:43532621-43532640 MS.gene049825:intron 25.0%
!!! TAGTTTATTTTTCCCACATA+TGG - chr4.4:43531106-43531125 None:intergenic 25.0%
!!! TATACTTTTTTGCTTCCATT+TGG + chr4.4:43528794-43528813 MS.gene049825:intron 25.0%
!!! TGTACTTTTAATTTCCACTA+TGG + chr4.4:43532559-43532578 MS.gene049825:intron 25.0%
!!! TGTCTTATTAGCAAATGTTT+TGG + chr4.4:43529883-43529902 MS.gene049825:intron 25.0%
!!! TTTATTATTTCTATGATGCG+AGG - chr4.4:43530446-43530465 None:intergenic 25.0%
!!! TTTTTTGCCTCTACAAAAAA+GGG + chr4.4:43530007-43530026 MS.gene049825:intron 25.0%
AAAACTGCAAAGATAGTGAA+AGG + chr4.4:43530527-43530546 MS.gene049825:CDS 30.0%
AAACTGAACAATACTACCAT+TGG - chr4.4:43528233-43528252 None:intergenic 30.0%
AACATACTGAACAAAAGGTT+AGG + chr4.4:43529764-43529783 MS.gene049825:intron 30.0%
AAGACATGGAATTCAAAAGA+TGG + chr4.4:43533489-43533508 MS.gene049825:CDS 30.0%
AAGGATATAACATCAGACAT+AGG + chr4.4:43528589-43528608 MS.gene049825:CDS 30.0%
AATCAGGAATATGATTAGAG+AGG + chr4.4:43532855-43532874 MS.gene049825:intron 30.0%
ACAATCTTAGAATTTGTGGT+TGG + chr4.4:43531411-43531430 MS.gene049825:intron 30.0%
ACCAATGAAATAATCGTTGT+CGG + chr4.4:43530912-43530931 MS.gene049825:intron 30.0%
AGAAAAAACAAATTTAGGCC+AGG + chr4.4:43530556-43530575 MS.gene049825:CDS 30.0%
AGACATGGAATTCAAAAGAT+GGG + chr4.4:43533490-43533509 MS.gene049825:CDS 30.0%
ATACTATGTTCTCAATGTTG+TGG + chr4.4:43528894-43528913 MS.gene049825:intron 30.0%
ATAGTCCAGTAAGGTATATA+AGG - chr4.4:43532594-43532613 None:intergenic 30.0%
ATGGGTAAACCTATTCATAT+AGG + chr4.4:43533622-43533641 MS.gene049825:CDS 30.0%
ATTAACAAGCAGCAATATAG+TGG - chr4.4:43533077-43533096 None:intergenic 30.0%
CAACTAATATGATCCATATG+TGG + chr4.4:43531019-43531038 MS.gene049825:intron 30.0%
CAATCTTAGAATTTGTGGTT+GGG + chr4.4:43531412-43531431 MS.gene049825:intron 30.0%
CACAAATATGATCCATATGT+GGG + chr4.4:43530882-43530901 MS.gene049825:intron 30.0%
CACTAATATGATCCATATGT+GGG + chr4.4:43531091-43531110 MS.gene049825:intron 30.0%
CATGAAACGTACAGAAAATA+TGG - chr4.4:43530078-43530097 None:intergenic 30.0%
CCTTTCACTTTCTTAGAATT+TGG - chr4.4:43529330-43529349 None:intergenic 30.0%
CGTTTAAAAAAAATTGAGGC+TGG + chr4.4:43530183-43530202 MS.gene049825:CDS 30.0%
CTGTTATTAGATGTTACACT+TGG + chr4.4:43530416-43530435 MS.gene049825:intron 30.0%
GAGAGAGTAATAAAAGGTAA+AGG - chr4.4:43529033-43529052 None:intergenic 30.0%
GCCTTATCTTTAATCTATGT+GGG - chr4.4:43529235-43529254 None:intergenic 30.0%
GGATATTAAAAAGCTTCAAG+TGG + chr4.4:43532221-43532240 MS.gene049825:CDS 30.0%
TAAGGAAACATATACCATAG+TGG - chr4.4:43532576-43532595 None:intergenic 30.0%
TCAAGAATAGACTAGAAGAT+GGG - chr4.4:43531899-43531918 None:intergenic 30.0%
TCCCACATAGATTAAAGATA+AGG + chr4.4:43529231-43529250 MS.gene049825:intron 30.0%
TGCAATAATATAGTCCAGTA+AGG - chr4.4:43532603-43532622 None:intergenic 30.0%
TGGAATTGTGTTTATAAGTG+GGG - chr4.4:43531481-43531500 None:intergenic 30.0%
TGTTTCCTTATATACCTTAC+TGG + chr4.4:43532586-43532605 MS.gene049825:intron 30.0%
TTCAAGAATAGACTAGAAGA+TGG - chr4.4:43531900-43531919 None:intergenic 30.0%
TTTCACTGTCAATGAATTGT+AGG + chr4.4:43528447-43528466 MS.gene049825:intron 30.0%
! AAAGAATCAATTTTGCAGAC+TGG + chr4.4:43532074-43532093 MS.gene049825:CDS 30.0%
! AATGATCGGTGTCTTAATAT+TGG - chr4.4:43530477-43530496 None:intergenic 30.0%
! AGGTATTTATTTGATGGTCT+TGG + chr4.4:43528752-43528771 MS.gene049825:intron 30.0%
! CCAAATTCTAAGAAAGTGAA+AGG + chr4.4:43529327-43529346 MS.gene049825:intron 30.0%
! GAAGCAAAAAAGTATAACGA+AGG - chr4.4:43528790-43528809 None:intergenic 30.0%
! TATCTGCTAGAAGCATAATA+TGG - chr4.4:43533325-43533344 None:intergenic 30.0%
! TATTATTGTTGCTTCATCAC+TGG + chr4.4:43532707-43532726 MS.gene049825:intron 30.0%
! TCAAGTATTGCAGTAATGAT+CGG - chr4.4:43530491-43530510 None:intergenic 30.0%
! TCATAATATAAAGTGATGGG+TGG + chr4.4:43532781-43532800 MS.gene049825:intron 30.0%
! TCTCAAAAATTTGCTTCCAT+CGG + chr4.4:43532290-43532309 MS.gene049825:CDS 30.0%
! TGAAAACTTTTCACTTTGCT+GGG + chr4.4:43530265-43530284 MS.gene049825:CDS 30.0%
! TTGAAAACTTTTCACTTTGC+TGG + chr4.4:43530264-43530283 MS.gene049825:CDS 30.0%
!! ATTAACAAAAAGTATCGGTG+AGG + chr4.4:43528666-43528685 MS.gene049825:CDS 30.0%
!! TATAGAAAGCTTTAGCTTGA+GGG - chr4.4:43530742-43530761 None:intergenic 30.0%
!! TCATGATGTTTTGTTGTAAC+AGG - chr4.4:43530772-43530791 None:intergenic 30.0%
!! TGTGTTTGTTTGTATTGGTT+TGG + chr4.4:43530096-43530115 MS.gene049825:intron 30.0%
!!! ACACCTTCTGTTTGTTTTTA+AGG + chr4.4:43530044-43530063 MS.gene049825:intron 30.0%
!!! ACTTCTTTTTTCTTCTTTGC+AGG + chr4.4:43532416-43532435 MS.gene049825:intron 30.0%
!!! CACATATGCTGTTTTTATTC+AGG + chr4.4:43530131-43530150 MS.gene049825:intron 30.0%
!!! CTTCTTTTTTCTTCTTTGCA+GGG + chr4.4:43532417-43532436 MS.gene049825:intron 30.0%
!!! CTTTTTTGCCTCTACAAAAA+AGG + chr4.4:43530006-43530025 MS.gene049825:intron 30.0%
!!! GCATTAGTTTTTCTTGATTG+AGG + chr4.4:43532620-43532639 MS.gene049825:intron 30.0%
!!! TCATTTTTTCTCATCAGCAA+GGG + chr4.4:43533137-43533156 MS.gene049825:intron 30.0%
!!! TTCATTTTTTCTCATCAGCA+AGG + chr4.4:43533136-43533155 MS.gene049825:intron 30.0%
AAACCTATTCATATAGGCAC+TGG + chr4.4:43533628-43533647 MS.gene049825:CDS 35.0%
AAAGAGGTTATGGCAATTGA+AGG + chr4.4:43533164-43533183 MS.gene049825:CDS 35.0%
AACAAACCAATACTGATAGG+TGG + chr4.4:43531128-43531147 MS.gene049825:intron 35.0%
AACTTTCTTCCGAAGATATC+TGG + chr4.4:43528709-43528728 MS.gene049825:CDS 35.0%
AAGAAACATCAATGACACGT+TGG - chr4.4:43528998-43529017 None:intergenic 35.0%
AAGAGGTTATGGCAATTGAA+GGG + chr4.4:43533165-43533184 MS.gene049825:CDS 35.0%
AATCACTCACTCCTTCAATT+GGG - chr4.4:43533594-43533613 None:intergenic 35.0%
AATGAAATAATCGTTGTCGG+TGG + chr4.4:43530915-43530934 MS.gene049825:intron 35.0%
ACCGACAACGATTATTTCAT+TGG - chr4.4:43530916-43530935 None:intergenic 35.0%
ACCTCAACATGCTTAATGAA+AGG - chr4.4:43531801-43531820 None:intergenic 35.0%
ACTACCATTGGTATCTCTTA+CGG - chr4.4:43528221-43528240 None:intergenic 35.0%
AGGAACAAACCAATACTGAT+AGG + chr4.4:43531125-43531144 MS.gene049825:intron 35.0%
AGTGAGTGATTGCATAATCA+TGG + chr4.4:43533603-43533622 MS.gene049825:CDS 35.0%
ATCATGATCTTTGACGAGAA+GGG + chr4.4:43530785-43530804 MS.gene049825:intron 35.0%
ATGAAATAATCGTTGTCGGT+GGG + chr4.4:43530916-43530935 MS.gene049825:intron 35.0%
ATTCCAGTGCCTATATGAAT+AGG - chr4.4:43533634-43533653 None:intergenic 35.0%
ATTGAACTGATGCACATTCT+GGG + chr4.4:43533221-43533240 MS.gene049825:CDS 35.0%
CAACATGCTTAATGAAAGGA+TGG - chr4.4:43531797-43531816 None:intergenic 35.0%
CAATTGCCATAACCTCTTTA+AGG - chr4.4:43533163-43533182 None:intergenic 35.0%
CACTTTGTTCCAATCTATAC+AGG + chr4.4:43531941-43531960 MS.gene049825:intron 35.0%
CAGTATACAATGAAACAGCA+TGG + chr4.4:43533281-43533300 MS.gene049825:CDS 35.0%
CATTACTGCAATACTTGAGA+GGG + chr4.4:43530493-43530512 MS.gene049825:CDS 35.0%
CCACAAATATGATCCATATG+TGG + chr4.4:43530881-43530900 MS.gene049825:intron 35.0%
CCACATATGGATCATATTAG+TGG - chr4.4:43531022-43531041 None:intergenic 35.0%
CCACATATGGATCATATTTG+TGG - chr4.4:43530884-43530903 None:intergenic 35.0%
CCACTAATATGATCCATATG+TGG + chr4.4:43531090-43531109 MS.gene049825:intron 35.0%
CCTAAATTACAGCAAGCATT+TGG - chr4.4:43530353-43530372 None:intergenic 35.0%
CCTCTAATATGATCCATATG+CGG + chr4.4:43530950-43530969 MS.gene049825:intron 35.0%
CTCTAATATGATCCATATGC+GGG + chr4.4:43530951-43530970 MS.gene049825:intron 35.0%
CTGATCTATGATACCATATC+TGG - chr4.4:43533258-43533277 None:intergenic 35.0%
GAAACGTACAGAAAATATGG+AGG - chr4.4:43530075-43530094 None:intergenic 35.0%
GGAATTGTGTTTATAAGTGG+GGG - chr4.4:43531480-43531499 None:intergenic 35.0%
GTGAGTGATTGCATAATCAT+GGG + chr4.4:43533604-43533623 MS.gene049825:CDS 35.0%
GTTGAAAAAGGAGTTCACTT+CGG - chr4.4:43532263-43532282 None:intergenic 35.0%
TACAAAAAAGGGAACTCTTG+AGG + chr4.4:43530018-43530037 MS.gene049825:intron 35.0%
TCATTACTGCAATACTTGAG+AGG + chr4.4:43530492-43530511 MS.gene049825:CDS 35.0%
TCCTTTCATTAAGCATGTTG+AGG + chr4.4:43531797-43531816 MS.gene049825:intron 35.0%
TCTTTAATCTATGTGGGACA+TGG - chr4.4:43529229-43529248 None:intergenic 35.0%
TCTTTACATGGTATTAGAGC+TGG - chr4.4:43531222-43531241 None:intergenic 35.0%
TGGACAACATAGTCAAAGAA+AGG - chr4.4:43530308-43530327 None:intergenic 35.0%
TGTGTTAAAGAGTCTCACAT+TGG - chr4.4:43531276-43531295 None:intergenic 35.0%
! ACTTTCTTAGAATTTGGGGT+GGG - chr4.4:43529324-43529343 None:intergenic 35.0%
! AGTTGGTATGTCTATGTTAG+TGG + chr4.4:43528549-43528568 MS.gene049825:CDS 35.0%
! ATCTGAGAAGTACACATTAC+TGG + chr4.4:43532503-43532522 MS.gene049825:CDS 35.0%
! GAAAACTTTTCACTTTGCTG+GGG + chr4.4:43530266-43530285 MS.gene049825:CDS 35.0%
! GGCCTTATCTTTAATCTATG+TGG - chr4.4:43529236-43529255 None:intergenic 35.0%
! GTTGTCTGTGTATGCTTTTA+AGG + chr4.4:43532985-43533004 MS.gene049825:intron 35.0%
! TAAAAGGTAAAGGGCATGAT+AGG - chr4.4:43529023-43529042 None:intergenic 35.0%
! TTGACTCTTGCAATTTTCTG+AGG + chr4.4:43528386-43528405 MS.gene049825:intron 35.0%
! TTGCTTCTTTTGCTTCTCTA+TGG + chr4.4:43529808-43529827 MS.gene049825:intron 35.0%
!! ATAGAAAGCTTTAGCTTGAG+GGG - chr4.4:43530741-43530760 None:intergenic 35.0%
!! CCAAATGCTTGCTGTAATTT+AGG + chr4.4:43530350-43530369 MS.gene049825:intron 35.0%
!! GTATAGAAAGCTTTAGCTTG+AGG - chr4.4:43530743-43530762 None:intergenic 35.0%
!! TTGCAATTTTCTGAGGAAGA+TGG + chr4.4:43528393-43528412 MS.gene049825:intron 35.0%
!!! AAGAGTTCCCTTTTTTGTAG+AGG - chr4.4:43530017-43530036 None:intergenic 35.0%
!!! ATGTTTTGGAGAAGCTAAAG+TGG + chr4.4:43529897-43529916 MS.gene049825:intron 35.0%
!!! CAGTTTTGTTATGGTGATGA+TGG + chr4.4:43528247-43528266 MS.gene049825:CDS 35.0%
!!! GATACAGTGTTTGTTTTGTC+TGG + chr4.4:43532364-43532383 MS.gene049825:intron 35.0%
AAAACAGGCTTGTAAGGTGA+GGG - chr4.4:43529285-43529304 None:intergenic 40.0%
AAAACTGAAGTTGAAGCCAG+AGG + chr4.4:43532097-43532116 MS.gene049825:CDS 40.0%
AACTGACATTCCTGCTATGT+TGG - chr4.4:43531825-43531844 None:intergenic 40.0%
AATACCTTCACTACAACCGA+TGG - chr4.4:43532309-43532328 None:intergenic 40.0%
ACCTTCGGATTGATCATCAT+CGG + chr4.4:43531052-43531071 MS.gene049825:intron 40.0%
AGAATAGACTAGAAGATGGG+TGG - chr4.4:43531896-43531915 None:intergenic 40.0%
AGAGGTTATGGCAATTGAAG+GGG + chr4.4:43533166-43533185 MS.gene049825:CDS 40.0%
AGCACACTTCTGCATTCTTT+AGG - chr4.4:43532660-43532679 None:intergenic 40.0%
AGCAGATATGATGACTGTCA+GGG + chr4.4:43533337-43533356 MS.gene049825:CDS 40.0%
CAATCACTCACTCCTTCAAT+TGG - chr4.4:43533595-43533614 None:intergenic 40.0%
CACACTTCTGCATTCTTTAG+GGG - chr4.4:43532658-43532677 None:intergenic 40.0%
CACTCATACAACTACATACC+TGG - chr4.4:43530577-43530596 None:intergenic 40.0%
CACTTTCTTAGAATTTGGGG+TGG - chr4.4:43529325-43529344 None:intergenic 40.0%
CAGGTATGTAGTTGTATGAG+TGG + chr4.4:43530575-43530594 MS.gene049825:intron 40.0%
CATCATGATCTTTGACGAGA+AGG + chr4.4:43530784-43530803 MS.gene049825:intron 40.0%
CATTGAACTGATGCACATTC+TGG + chr4.4:43533220-43533239 MS.gene049825:CDS 40.0%
CCGCATATGGATCATATTAG+AGG - chr4.4:43530953-43530972 None:intergenic 40.0%
CTAACTCAACCGTACAAAAC+AGG - chr4.4:43529300-43529319 None:intergenic 40.0%
GAATGATCGAGGTCAAACAA+AGG + chr4.4:43533650-43533669 MS.gene049825:CDS 40.0%
GATATCCATTCAGCATCTTG+AGG - chr4.4:43531650-43531669 None:intergenic 40.0%
GCAATTGGAGCTCATAGTAT+TGG + chr4.4:43530219-43530238 MS.gene049825:CDS 40.0%
GCACACTTCTGCATTCTTTA+GGG - chr4.4:43532659-43532678 None:intergenic 40.0%
GCATTCTGTTGCACATTGAT+TGG + chr4.4:43530372-43530391 MS.gene049825:intron 40.0%
TACACCGTAAGAGATACCAA+TGG + chr4.4:43528214-43528233 MS.gene049825:CDS 40.0%
TAGCAGATATGATGACTGTC+AGG + chr4.4:43533336-43533355 MS.gene049825:CDS 40.0%
TCTTCGCAACCTGTATAGAT+TGG - chr4.4:43531953-43531972 None:intergenic 40.0%
TGCTATCAGGTTTCTGCTAT+CGG - chr4.4:43531358-43531377 None:intergenic 40.0%
TTCCATGTCTTGTCATTCCA+AGG - chr4.4:43533480-43533499 None:intergenic 40.0%
! AGTTTTTATCTCGCTGGACA+TGG + chr4.4:43532007-43532026 MS.gene049825:CDS 40.0%
! CCTTACAAGCCTGTTTTGTA+CGG + chr4.4:43529288-43529307 MS.gene049825:intron 40.0%
! CGACTGATTCCAGATATCTT+CGG - chr4.4:43528721-43528740 None:intergenic 40.0%
! CTCATAGTATTGGAGAACCT+GGG + chr4.4:43530229-43530248 MS.gene049825:CDS 40.0%
! CTGTTTTGTACGGTTGAGTT+AGG + chr4.4:43529298-43529317 MS.gene049825:intron 40.0%
! GGAGTACGAAAGAAGTGTAT+TGG + chr4.4:43529199-43529218 MS.gene049825:intron 40.0%
! GTCCCGTCATGTTTTTCTTT+GGG - chr4.4:43532897-43532916 None:intergenic 40.0%
! GTTTTTATCTCGCTGGACAT+GGG + chr4.4:43532008-43532027 MS.gene049825:CDS 40.0%
! TGAGAAGTACACATTACTGG+CGG + chr4.4:43532506-43532525 MS.gene049825:CDS 40.0%
! TGTCCCGTCATGTTTTTCTT+TGG - chr4.4:43532898-43532917 None:intergenic 40.0%
! TTTTTAATCGTGCAGTCTCG+TGG + chr4.4:43529844-43529863 MS.gene049825:intron 40.0%
!! TCGGTTATTTCTCAGAAGCA+AGG + chr4.4:43528321-43528340 MS.gene049825:CDS 40.0%
!! TTGTTATGGTGATGATGGCA+TGG + chr4.4:43528252-43528271 MS.gene049825:CDS 40.0%
!! TTTTGGAGAAGCTAAAGTGG+TGG + chr4.4:43529900-43529919 MS.gene049825:intron 40.0%
AAGTACACATTACTGGCGGA+AGG + chr4.4:43532510-43532529 MS.gene049825:CDS 45.0%
AATCAGTCGCAGACAACTAG+AGG + chr4.4:43528732-43528751 MS.gene049825:CDS 45.0%
ACCGATGATGATCAATCCGA+AGG - chr4.4:43531056-43531075 None:intergenic 45.0%
AGACGCAGGATGATATTGAC+TGG + chr4.4:43532681-43532700 MS.gene049825:intron 45.0%
AGAGAGGAGATTATCCTGCT+GGG + chr4.4:43532871-43532890 MS.gene049825:intron 45.0%
AGTACACATTACTGGCGGAA+GGG + chr4.4:43532511-43532530 MS.gene049825:CDS 45.0%
ATGGCAATTGAAGGGGTTGA+TGG + chr4.4:43533173-43533192 MS.gene049825:CDS 45.0%
ATGGGCATAATCGAAAAGGC+AGG + chr4.4:43532026-43532045 MS.gene049825:CDS 45.0%
ATTACATCATCGCCATCAGC+GGG - chr4.4:43528481-43528500 None:intergenic 45.0%
ATTGAGGCTGGAACTCCAAT+TGG + chr4.4:43530195-43530214 MS.gene049825:CDS 45.0%
CAAAACAGGCTTGTAAGGTG+AGG - chr4.4:43529286-43529305 None:intergenic 45.0%
CAAGATGTACTCTTCACCTC+TGG - chr4.4:43532116-43532135 None:intergenic 45.0%
CAAGGGCCTTAAAGAGGTTA+TGG + chr4.4:43533154-43533173 MS.gene049825:CDS 45.0%
CACGAGAAGCTTTCAGAAGT+TGG + chr4.4:43528532-43528551 MS.gene049825:CDS 45.0%
CCGTACAAAACAGGCTTGTA+AGG - chr4.4:43529291-43529310 None:intergenic 45.0%
CTAACACAACCGCACAAAAC+CGG + chr4.4:43531436-43531455 MS.gene049825:intron 45.0%
CTCTTCCTCAAGATGCTGAA+TGG + chr4.4:43531642-43531661 MS.gene049825:intron 45.0%
CTGTAAGATTAAGGGGGACT+GGG + chr4.4:43532926-43532945 MS.gene049825:intron 45.0%
CTGTGCTTCACTATTGTTGC+CGG - chr4.4:43531178-43531197 None:intergenic 45.0%
GATAGCAGAAACCTGATAGC+AGG + chr4.4:43531357-43531376 MS.gene049825:intron 45.0%
GATTACATCATCGCCATCAG+CGG - chr4.4:43528482-43528501 None:intergenic 45.0%
GCACCAAGTCCAATAGTGTT+GGG - chr4.4:43531313-43531332 None:intergenic 45.0%
GCAGGCATGGAAGGAAAAAA+TGG + chr4.4:43528280-43528299 MS.gene049825:CDS 45.0%
GCTATCAGGTTTCTGCTATC+GGG - chr4.4:43531357-43531376 None:intergenic 45.0%
GGAACTCCAATTGGTGCAAT+TGG + chr4.4:43530204-43530223 MS.gene049825:CDS 45.0%
GGACATGGGCATAATCGAAA+AGG + chr4.4:43532022-43532041 MS.gene049825:CDS 45.0%
GGAGAAGAATGCTTCAGACA+AGG + chr4.4:43528570-43528589 MS.gene049825:CDS 45.0%
GGCCCAAAGAAAAACATGAC+GGG + chr4.4:43532892-43532911 MS.gene049825:intron 45.0%
GGGCCCAAAGAAAAACATGA+CGG + chr4.4:43532891-43532910 MS.gene049825:intron 45.0%
GTCACCACTGGATTGTTTGT+CGG + chr4.4:43530843-43530862 MS.gene049825:intron 45.0%
GTCCTTGGAATGACAAGACA+TGG + chr4.4:43533475-43533494 MS.gene049825:CDS 45.0%
TAGAGAGGAGATTATCCTGC+TGG + chr4.4:43532870-43532889 MS.gene049825:intron 45.0%
TCAAACTAGGGTCAAGTCCT+TGG + chr4.4:43533460-43533479 MS.gene049825:intron 45.0%
TGAGCTCCAATTGCACCAAT+TGG - chr4.4:43530213-43530232 None:intergenic 45.0%
TGTAAGATTAAGGGGGACTG+GGG + chr4.4:43532927-43532946 MS.gene049825:intron 45.0%
TGTGGGAAAAGAGTCACCTT+CGG + chr4.4:43531037-43531056 MS.gene049825:intron 45.0%
TTCAAAGTCATCTGAGTCCC+AGG - chr4.4:43530249-43530268 None:intergenic 45.0%
TTCGGATTGATCATCATCGG+TGG + chr4.4:43531055-43531074 MS.gene049825:intron 45.0%
! AAAAACATGACGGGACAGTC+GGG + chr4.4:43532901-43532920 MS.gene049825:intron 45.0%
! AGCAGCAGTTTTTATCTCGC+TGG + chr4.4:43532001-43532020 MS.gene049825:CDS 45.0%
! AGTCGGGTGCTGTAAGATTA+AGG + chr4.4:43532917-43532936 MS.gene049825:intron 45.0%
! CAAGTCCAATAGTGTTGGGT+GGG - chr4.4:43531309-43531328 None:intergenic 45.0%
! GAAAAACATGACGGGACAGT+CGG + chr4.4:43532900-43532919 MS.gene049825:intron 45.0%
! GACGCAGGATGATATTGACT+GGG + chr4.4:43532682-43532701 MS.gene049825:intron 45.0%
! GACTGGGGTTAGTGAAAACT+AGG + chr4.4:43532942-43532961 MS.gene049825:intron 45.0%
! GATGCACATTCTGGGAATTG+AGG + chr4.4:43533229-43533248 MS.gene049825:CDS 45.0%
! GCTCATAGTATTGGAGAACC+TGG + chr4.4:43530228-43530247 MS.gene049825:CDS 45.0%
! GGTGACTCTTTTCCCACATA+TGG - chr4.4:43531035-43531054 None:intergenic 45.0%
! GTCGGGTGCTGTAAGATTAA+GGG + chr4.4:43532918-43532937 MS.gene049825:intron 45.0%
! TCGGGTGCTGTAAGATTAAG+GGG + chr4.4:43532919-43532938 MS.gene049825:intron 45.0%
! TGGCAATTGAAGGGGTTGAT+GGG + chr4.4:43533174-43533193 MS.gene049825:CDS 45.0%
! TTGGTGACTCTTCCCACATA+TGG - chr4.4:43530897-43530916 None:intergenic 45.0%
! TTTTCGATGCATCCTTGCGT+GGG + chr4.4:43533560-43533579 MS.gene049825:CDS 45.0%
!! ACTTGGTGCGTGGATGTAAA+TGG + chr4.4:43531324-43531343 MS.gene049825:intron 45.0%
!! TATAGGCACTGGAATGATCG+AGG + chr4.4:43533639-43533658 MS.gene049825:CDS 45.0%
!!! GAGAAGGGTGCTCCTTTTAT+AGG + chr4.4:43529520-43529539 MS.gene049825:intron 45.0%
!!! TTTTTTCCTTCCATGCCTGC+TGG - chr4.4:43528280-43528299 None:intergenic 45.0%
!! AAATTACTTATAATAAAATA+CGG + chr4.4:43529174-43529193 MS.gene049825:intron 5.0%
!! AATTATTATTATAATAATGT+AGG + chr4.4:43529444-43529463 MS.gene049825:intron 5.0%
!!! TTTTTATTTTTTTTATTTCT+AGG - chr4.4:43532467-43532486 None:intergenic 5.0%
AAGATGGGTGGTCTGGCAAT+GGG - chr4.4:43531884-43531903 None:intergenic 50.0%
AAGCTTCAAGTGGAACCCCA+AGG + chr4.4:43532231-43532250 MS.gene049825:CDS 50.0%
AATCGTGCAGTCTCGTGGAT+GGG + chr4.4:43529849-43529868 MS.gene049825:intron 50.0%
ACCACTGGATTGTTTGTCGG+TGG + chr4.4:43530846-43530865 MS.gene049825:intron 50.0%
ACGGACAGCTAGCAAGAACT+TGG + chr4.4:43529396-43529415 MS.gene049825:intron 50.0%
AGACTAGAAGATGGGTGGTC+TGG - chr4.4:43531891-43531910 None:intergenic 50.0%
AGCTTCAAGTGGAACCCCAA+GGG + chr4.4:43532232-43532251 MS.gene049825:CDS 50.0%
ATGGGGCTTAACAGAAGGGT+AGG - chr4.4:43531866-43531885 None:intergenic 50.0%
CATCAGCAAGGGCCTTAAAG+AGG + chr4.4:43533148-43533167 MS.gene049825:intron 50.0%
CATGGGAAAAGAGTCACCAC+TGG + chr4.4:43530831-43530850 MS.gene049825:intron 50.0%
CCACCCAACACTATTGGACT+TGG + chr4.4:43531307-43531326 MS.gene049825:intron 50.0%
CCACTGGATTGTTTGTCGGT+GGG + chr4.4:43530847-43530866 MS.gene049825:intron 50.0%
CGCACCAAGTCCAATAGTGT+TGG - chr4.4:43531314-43531333 None:intergenic 50.0%
GAAATCCTCACCACACAAGC+CGG - chr4.4:43531458-43531477 None:intergenic 50.0%
GCAGCACCACCTATCAGTAT+TGG - chr4.4:43531137-43531156 None:intergenic 50.0%
GCTGTAAGATTAAGGGGGAC+TGG + chr4.4:43532925-43532944 MS.gene049825:intron 50.0%
GGAATTGAGGCTGCCAGATA+TGG + chr4.4:43533242-43533261 MS.gene049825:CDS 50.0%
GGCAATGGGGCTTAACAGAA+GGG - chr4.4:43531870-43531889 None:intergenic 50.0%
GGTGCGTGGATGTAAATGGT+GGG + chr4.4:43531328-43531347 MS.gene049825:intron 50.0%
TAATCGTGCAGTCTCGTGGA+TGG + chr4.4:43529848-43529867 MS.gene049825:intron 50.0%
TCACACCCACCCAACACTAT+TGG + chr4.4:43531301-43531320 MS.gene049825:intron 50.0%
TGCTTCACTATTGTTGCCGG+CGG - chr4.4:43531175-43531194 None:intergenic 50.0%
TGGCAATGGGGCTTAACAGA+AGG - chr4.4:43531871-43531890 None:intergenic 50.0%
TGGTGCGTGGATGTAAATGG+TGG + chr4.4:43531327-43531346 MS.gene049825:intron 50.0%
TTCACTTCGGCTAGACCCTT+GGG - chr4.4:43532250-43532269 None:intergenic 50.0%
! ATAGTGTTGGGTGGGTGTGA+CGG - chr4.4:43531301-43531320 None:intergenic 50.0%
! CAGTGGTGACTCTTTTCCCA+TGG - chr4.4:43530833-43530852 None:intergenic 50.0%
! CCAAGTCCAATAGTGTTGGG+TGG - chr4.4:43531310-43531329 None:intergenic 50.0%
! CGGGTGCTGTAAGATTAAGG+GGG + chr4.4:43532920-43532939 MS.gene049825:intron 50.0%
! CTTTTCGATGCATCCTTGCG+TGG + chr4.4:43533559-43533578 MS.gene049825:CDS 50.0%
! GCTTCCATCGGTTGTAGTGA+AGG + chr4.4:43532302-43532321 MS.gene049825:CDS 50.0%
! TGTTGAGGTGCCAACATAGC+AGG + chr4.4:43531812-43531831 MS.gene049825:intron 50.0%
! TGTTTTTCTTTGGGCCCAGC+AGG - chr4.4:43532888-43532907 None:intergenic 50.0%
!! ACACTATTGGACTTGGTGCG+TGG + chr4.4:43531314-43531333 MS.gene049825:intron 50.0%
!! ATACTGATAGGTGGTGCTGC+TGG + chr4.4:43531137-43531156 MS.gene049825:intron 50.0%
!! CGGTTTTGTGCGGTTGTGTT+AGG - chr4.4:43531438-43531457 None:intergenic 50.0%
ACCGACGACGATCAATCCAG+TGG - chr4.4:43530985-43531004 None:intergenic 55.0%
ACTGGATTGATCGTCGTCGG+TGG + chr4.4:43530984-43531003 MS.gene049825:intron 55.0%
AGATGGGTGGTCTGGCAATG+GGG - chr4.4:43531883-43531902 None:intergenic 55.0%
AGCCTCCTGCAAGACTCGTT+GGG - chr4.4:43531386-43531405 None:intergenic 55.0%
ATCGCCATCAGCGGGACATA+TGG - chr4.4:43528473-43528492 None:intergenic 55.0%
ATCGTGCAGTCTCGTGGATG+GGG + chr4.4:43529850-43529869 MS.gene049825:intron 55.0%
ATGGATCCAGCAGGCATGGA+AGG + chr4.4:43528271-43528290 MS.gene049825:CDS 55.0%
CCCACCGACAAACAATCCAG+TGG - chr4.4:43530850-43530869 None:intergenic 55.0%
CTGGATTGATCGTCGTCGGT+GGG + chr4.4:43530985-43531004 MS.gene049825:intron 55.0%
GAAGATGGGTGGTCTGGCAA+TGG - chr4.4:43531885-43531904 None:intergenic 55.0%
GATGCATCCTTGCGTGGGAA+GGG + chr4.4:43533565-43533584 MS.gene049825:CDS 55.0%
GCCACTGGATTGATCGTCGT+CGG + chr4.4:43530981-43531000 MS.gene049825:intron 55.0%
GGGAAGGGTGACCCAATTGA+AGG + chr4.4:43533580-43533599 MS.gene049825:CDS 55.0%
GTTCACTTCGGCTAGACCCT+TGG - chr4.4:43532251-43532270 None:intergenic 55.0%
TAGGCCATATGTCCCGCTGA+TGG + chr4.4:43528466-43528485 MS.gene049825:intron 55.0%
TCACTTCGGCTAGACCCTTG+GGG - chr4.4:43532249-43532268 None:intergenic 55.0%
TCGTTGGGCAACCTGCTATC+AGG - chr4.4:43531371-43531390 None:intergenic 55.0%
TTCACTATTGTTGCCGGCGG+CGG - chr4.4:43531172-43531191 None:intergenic 55.0%
! GATGATGGCATGGATCCAGC+AGG + chr4.4:43528262-43528281 MS.gene049825:CDS 55.0%
! GCAGAAGTGTGCTTAGACGC+AGG + chr4.4:43532667-43532686 MS.gene049825:intron 55.0%
! GCGTGGATGTAAATGGTGGG+TGG + chr4.4:43531331-43531350 MS.gene049825:intron 55.0%
! TAGTGTTGGGTGGGTGTGAC+GGG - chr4.4:43531300-43531319 None:intergenic 55.0%
!! CAAAACCGGCTTGTGTGGTG+AGG + chr4.4:43531450-43531469 MS.gene049825:intron 55.0%
!! CCACACAAGCCGGTTTTGTG+CGG - chr4.4:43531448-43531467 None:intergenic 55.0%
CGATGCATCCTTGCGTGGGA+AGG + chr4.4:43533564-43533583 MS.gene049825:CDS 60.0%
GAGCCTCCTGCAAGACTCGT+TGG - chr4.4:43531387-43531406 None:intergenic 60.0%
GGTTGCCCAACGAGTCTTGC+AGG + chr4.4:43531378-43531397 MS.gene049825:intron 60.0%
GTGGCGACTCTTCCCGCATA+TGG - chr4.4:43530966-43530985 None:intergenic 60.0%
TATGCGGGAAGAGTCGCCAC+TGG + chr4.4:43530966-43530985 MS.gene049825:intron 60.0%
TGCCCAACGAGTCTTGCAGG+AGG + chr4.4:43531381-43531400 MS.gene049825:intron 60.0%
TGGCATGGATCCAGCAGGCA+TGG + chr4.4:43528267-43528286 MS.gene049825:CDS 60.0%
! AGTGTTGGGTGGGTGTGACG+GGG - chr4.4:43531299-43531318 None:intergenic 60.0%
!! CCGCACAAAACCGGCTTGTG+TGG + chr4.4:43531445-43531464 MS.gene049825:intron 60.0%
!! CTGATAGGTGGTGCTGCTGG+CGG + chr4.4:43531140-43531159 MS.gene049825:intron 60.0%
TGGGTCACCCTTCCCACGCA+AGG - chr4.4:43533575-43533594 None:intergenic 65.0%
CTGGCGGAAAATGCCGCCGC+CGG + chr4.4:43531156-43531175 MS.gene049825:intron 70.0%


Chromosome Type Strat End Strand Name
chr4.4 gene 43528163 43533675 43528163 ID=MS.gene049825
chr4.4 mRNA 43528163 43533675 43528163 ID=MS.gene049825.t1;Parent=MS.gene049825
chr4.4 exon 43528163 43528342 43528163 ID=MS.gene049825.t1.exon1;Parent=MS.gene049825.t1
chr4.4 CDS 43528163 43528342 43528163 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43528469 43528753 43528469 ID=MS.gene049825.t1.exon2;Parent=MS.gene049825.t1
chr4.4 CDS 43528469 43528753 43528469 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43530153 43530300 43530153 ID=MS.gene049825.t1.exon3;Parent=MS.gene049825.t1
chr4.4 CDS 43530153 43530300 43530153 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43530426 43530577 43530426 ID=MS.gene049825.t1.exon4;Parent=MS.gene049825.t1
chr4.4 CDS 43530426 43530577 43530426 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43531963 43532118 43531963 ID=MS.gene049825.t1.exon5;Parent=MS.gene049825.t1
chr4.4 CDS 43531963 43532118 43531963 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43532207 43532323 43532207 ID=MS.gene049825.t1.exon6;Parent=MS.gene049825.t1
chr4.4 CDS 43532207 43532323 43532207 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43532438 43532532 43532438 ID=MS.gene049825.t1.exon7;Parent=MS.gene049825.t1
chr4.4 CDS 43532438 43532532 43532438 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43533154 43533358 43533154 ID=MS.gene049825.t1.exon8;Parent=MS.gene049825.t1
chr4.4 CDS 43533154 43533358 43533154 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
chr4.4 exon 43533469 43533675 43533469 ID=MS.gene049825.t1.exon9;Parent=MS.gene049825.t1
chr4.4 CDS 43533469 43533675 43533469 ID=cds.MS.gene049825.t1;Parent=MS.gene049825.t1
Gene Sequence

>MS.gene049825

ATGTCTCGTAGATTAATGAAAGCTCTAGAAGACTTATTTTTACATTATGATTACACCGTAAGAGATACCAATGGTAGTATTGTTCAGTTTTGTTATGGTGATGATGGCATGGATCCAGCAGGCATGGAAGGAAAAAATGGAAAACCATTAAATTTTGATCGGTTATTTCTCAGAAGCAAGGTTTAAAAGCTTCCTTTGTTGTTTTATTTAGTTTCATATTTTCTTGACTCTTGCAATTTTCTGAGGAAGATGGATCTTGTTAATTTCTTCTATATCTCTCTGAATTTCACTGTCAATGAATTGTAGGCCATATGTCCCGCTGATGGCGATGATGTAATCTTATCTTCTTCAGATGTGTGTAAAGTACTTCACGAGAAGCTTTCAGAAGTTGGTATGTCTATGTTAGTGGAGAAGAATGCTTCAGACAAGGATATAACATCAGACATAGGCTTCTCTGCTGATTTTCTAAAATCTCTACAATCTTTTGTCGAAAAAAATACAACATTAACAAAAAGTATCGGTGAGGACGATTCTAGTAATTTGAAGAACTTTCTTCCGAAGATATCTGGAATCAGTCGCAGACAACTAGAGGTATTTATTTGATGGTCTTGGCTTAACGTTTCTCCTTCGTTATACTTTTTTGCTTCCATTTGGTCATTCTAATTTTGTTGTTTTATAAGCAAGTCTTAACAATCTAATTTGCTTACGTTAACTTGTTAATTTTTCTTTTGATACTATGTTCTCAATGTTGTGGATGTGTTTTACTCCCTCTGTATTTAATTATGTTACTTTGAAAAAATATTTGTGATTTATTATATGTTAGTTTACAATACCAACGTGTCATTGATGTTTCTTTTCCTATCATGCCCTTTACCTTTTATTACTCTCTCTTCTTTCAATTCTTATGATCTTTTTCCCATGTTATTAATGTGGGATAATTTTGTTAAACCATTCATAATTTATCTTTGCAATACAAAATTAATTGCATTTCTTAATATATGTGAATATTGCAAATTACTTATAATAAAATACGGAGGGAGTACGAAAGAAGTGTATTGGAAAACCATGTCCCACATAGATTAAAGATAAGGCCTAACTAGAGTTTATAAAGAGAGACTTCCCTCACCTTACAAGCCTGTTTTGTACGGTTGAGTTAGGCCCACCCCAAATTCTAAGAAAGTGAAAGGACTATCTAAACTGTATAAAGAGTGCTAATGTATTTGTTTTTCAATGACGGACAGCTAGCAAGAACTTGGAAATTCTGAATAATATTTCAACTGCAATTATTATTATAATAATGTAGGCAAAGTTAGTATATGTAGAAATTACTCATAATTTGAGATTATGTATTTCAAATGAGAAGGGTGCTCCTTTTATAGGAGAAAATACAACTAATTAACCCCTTAATTTAAGGAGTGATATAATAGAAAAACAAACAATCATAAAAAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATAATTATTATTATTATAATAAAAGGAAATAATATATATTTCAAAAGTATAACTGATAATAGTAATAAATTTTTAATTTTGATAGAAAAATTCATTAAAAACATACTGAACAAAAGGTTAGGAAGTTAAGATCTTAGTAGAACTTGCTTCTTTTGCTTCTCTATGGAAAAACATGTGCTTTTTTAATCGTGCAGTCTCGTGGATGGGGCTGTTGTCATTGTCTTATTAGCAAATGTTTTGGAGAAGCTAAAGTGGTGGCACTTATTATTGTGTTTTAAGCTGTTAGTGTCATTGTCAATTCTTGTGCGTTGATGTAATTGTTTGTTCACAATAAATACGATCTTTTTTGCCTCTACAAAAAAGGGAACTCTTGAGGTCTACACCTTCTGTTTGTTTTTAAGGTTTTGCCTCCATATTTTCTGTACGTTTCATGTGTTTGTTTGTATTGGTTTGGTACTGATTCCGTCACATATGCTGTTTTTATTCAGGTTTTTCTAGATATTTGTCTATCACGTTATCGTTTAAAAAAAATTGAGGCTGGAACTCCAATTGGTGCAATTGGAGCTCATAGTATTGGAGAACCTGGGACTCAGATGACTTTGAAAACTTTTCACTTTGCTGGGGTTGCAAGCATGAGTATCCTTTCTTTGACTATGTTGTCCATATGTTGATCATTAATGTTCTGCCAAATGCTTGCTGTAATTTAGGCATTCTGTTGCACATTGATTGGTTTTGAATGTTGTTCCTTAATCTGTTATTAGATGTTACACTTGGAGTTCCTCGCATCATAGAAATAATAAATGGAGCATCCAATATTAAGACACCGATCATTACTGCAATACTTGAGAGGGATGATAATGCAAAAACTGCAAAGATAGTGAAAGGATGCATAGAAAAAACAAATTTAGGCCAGGTATGTAGTTGTATGAGTGGTTGTGTCTAATTGACCACACTGATAGTATATTTATATTCATATGAGTTGACTACAATTGATATCGTAATGAATACTATTAATTATAGTATTAATTAATAAAAGCTATTCAATACTAGTTGACTAATTGATTCTTAAGACTCCCCTCAAGCTAAAGCTTTCTATACTTTGAGCCTGTTACAACAAAACATCATGATCTTTGACGAGAAGGGAAAGACACAATTAATGATTTATCCATGGGAAAAGAGTCACCACTGGATTGTTTGTCGGTGGGTAGAAAAGTCACCACAAATATGATCCATATGTGGGAAGAGTCACCAATGAAATAATCGTTGTCGGTGGGTAGAAAAGTCACCTCTAATATGATCCATATGCGGGAAGAGTCGCCACTGGATTGATCGTCGTCGGTGGGAAGAAAAGTCACAACTAATATGATCCATATGTGGGAAAAGAGTCACCTTCGGATTGATCATCATCGGTGGCAAGAAAAGTCACCACTAATATGATCCATATGTGGGAAAAATAAACTAGGAACAAACCAATACTGATAGGTGGTGCTGCTGGCGGAAAATGCCGCCGCCGGCAACAATAGTGAAGCACAGTGAAATGTCACAAAATCAGAACCAGCTCTAATACCATGTAAAGAATGTATATTTGTGTGAAGCAACATCTCTCAACCAATGTGAGACTCTTTAACACACCCCGTCACACCCACCCAACACTATTGGACTTGGTGCGTGGATGTAAATGGTGGGTGGCCCGATAGCAGAAACCTGATAGCAGGTTGCCCAACGAGTCTTGCAGGAGGCTCTGATACAATCTTAGAATTTGTGGTTGGGCCTAACACAACCGCACAAAACCGGCTTGTGTGGTGAGGATTTCCCCCACTTATAAACACAATTCCAAAGTATTATTCTAACTGTGTAAAGAGTAAAAACATTGATTTGACTATATAGACTATGCTTTAACGCTCTCAATACTGTAATCACTAATCATTACAAAATATACAATTGAAAATTACAAATACGAAAATAATATTTATAATACTCTTCCTCAAGATGCTGAATGGATATCTTTCTTGAGCATTATAATCAATTTGTTGCCTGAATTGTATCTTAGTTATCAACCATTATTTTTCCACCAAAAGATTAGTTATCAATCATAAATAGATGTATGTGTTATTGTAAGACTACTGTTTCCATCCTTTCATTAAGCATGTTGAGGTGCCAACATAGCAGGAATGTCAGTTATCATAATGATGCTTTGACCTACCCTTCTGTTAAGCCCCATTGCCAGACCACCCATCTTCTAGTCTATTCTTGAAATATCTAATCTCAAATACTATCACTTTGTTCCAATCTATACAGGTTGCGAAGAGTATTAAAGTTGTTTACTCTAACAAATTAGCAGCAGTTTTTATCTCGCTGGACATGGGCATAATCGAAAAGGCAGGACTGAATATAGATGCCAATATTGTGAAAGAATCAATTTTGCAGACTGGAAAACTGAAGTTGAAGCCAGAGGTGAAGAGTACATCTTGTAATTATGAATTTCTATTCTATTCCATTTATGCCTCTAATATTCAAAGCTTTTTTTATTTTATTTTTGCAGAATGTTAAGATTTTGGATATTAAAAAGCTTCAAGTGGAACCCCAAGGGTCTAGCCGAAGTGAACTCCTTTTTCAACTTAATAATCTCAAAAATTTGCTTCCATCGGTTGTAGTGAAGGTATTTGTGTGTGTGTGTGTGTGTGTCTTTCTTGATAGTTGATACAGTGTTTGTTTTGTCTGGCTTTGTATTTTATATTCAGATGGAAAAACACTTCTTTTTTCTTCTTTGCAGGGAGTTAAAACTGTCGAACGAACTGTCCTAGAAATAAAAAAAATAAAAACAAATGATGGTAAAGAATCTGAGAAGTACACATTACTGGCGGAAGGGTTAGTTCATCCTCTGTATTTTGTTATGTACTTTTAATTTCCACTATGGTATATGTTTCCTTATATACCTTACTGGACTATATTATTGCATTAGTTTTTCTTGATTGAGGGAATGAGTGTTGCCCCTAAAGAATGCAGAAGTGTGCTTAGACGCAGGATGATATTGACTGGGAATATTATTGTTGCTTCATCACTGGTTCTGCTTAAGCTTTCAACCAAATATGTATGAAGAAGAACTTCATTTTCTTTCATAATATAAAGTGATGGGTGGAAAATAGAAGTGTAACAAAATCACCGTATATTCAGATTAATGTGAAATGAAAATCAGGAATATGATTAGAGAGGAGATTATCCTGCTGGGCCCAAAGAAAAACATGACGGGACAGTCGGGTGCTGTAAGATTAAGGGGGACTGGGGTTAGTGAAAACTAGGTCGACTTCTAATTTTATGTTGTTGTCTGTGTATGCTTTTAAGGAAAAGCAGTGAAAAAAATAAAGTAAACTATTGTCATGCTGAAGTAATATCTTGCTTTCACAGCATTCCACTATATTGCTGCTTGTTAATTGTCAAAATCATTAAACGTCAGTTTCTAATCTGCATGTATTCATTTTTTCTCATCAGCAAGGGCCTTAAAGAGGTTATGGCAATTGAAGGGGTTGATGGGCATAAAACCGTTACTAATCATATCATTGAACTGATGCACATTCTGGGAATTGAGGCTGCCAGATATGGTATCATAGATCAGATACAGTATACAATGAAACAGCATGGAATGAGCATAGACGTACGCCATATTATGCTTCTAGCAGATATGATGACTGTCAGGGTGAGTTATTTGAAAATTACTATAAGGCCAAAAAGTTTAAATTACAAGTCCCATGTGTGTTTGTGATAAATATGTAGATTTCTACTCATTTATGTGATTTATCAAACTAGGGTCAAGTCCTTGGAATGACAAGACATGGAATTCAAAAGATGGGCAGAAGTGCATTAATGCTTGCATCATTTGAGAGTTCAACAGACTATCTTTTCGATGCATCCTTGCGTGGGAAGGGTGACCCAATTGAAGGAGTGAGTGATTGCATAATCATGGGTAAACCTATTCATATAGGCACTGGAATGATCGAGGTCAAACAAAGGTGA

Protein sequence

>MS.gene049825.t1

MSRRLMKALEDLFLHYDYTVRDTNGSIVQFCYGDDGMDPAGMEGKNGKPLNFDRLFLRSKAICPADGDDVILSSSDVCKVLHEKLSEVGMSMLVEKNASDKDITSDIGFSADFLKSLQSFVEKNTTLTKSIGEDDSSNLKNFLPKISGISRRQLEVFLDICLSRYRLKKIEAGTPIGAIGAHSIGEPGTQMTLKTFHFAGVASMNVTLGVPRIIEIINGASNIKTPIITAILERDDNAKTAKIVKGCIEKTNLGQVAKSIKVVYSNKLAAVFISLDMGIIEKAGLNIDANIVKESILQTGKLKLKPENVKILDIKKLQVEPQGSSRSELLFQLNNLKNLLPSVVVKGVKTVERTVLEIKKIKTNDGKESEKYTLLAEGKGLKEVMAIEGVDGHKTVTNHIIELMHILGIEAARYGIIDQIQYTMKQHGMSIDVRHIMLLADMMTVRGQVLGMTRHGIQKMGRSALMLASFESSTDYLFDASLRGKGDPIEGVSDCIIMGKPIHIGTGMIEVKQR