Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58509.t1 | XP_003609672.1 | 97.1 | 454 | 13 | 0 | 1 | 454 | 1 | 454 | 4.20E-268 | 933.3 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58509.t1 | O22775 | 80.1 | 462 | 80 | 3 | 1 | 453 | 1 | 459 | 1.8e-227 | 789.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58509.t1 | G7JLH4 | 97.1 | 454 | 13 | 0 | 1 | 454 | 1 | 454 | 3.0e-268 | 933.3 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055531 | MS.gene58509 | 0.830072 | 3.61E-55 | -1.69E-46 |
MS.gene055622 | MS.gene58509 | 0.804554 | 2.04E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58509.t1 | MTR_4g119880 | 98.899 | 454 | 5 | 0 | 1 | 454 | 1 | 454 | 0.0 | 943 |
MS.gene58509.t1 | MTR_7g108675 | 78.373 | 467 | 87 | 3 | 1 | 454 | 1 | 466 | 0.0 | 754 |
MS.gene58509.t1 | MTR_8g058553 | 78.072 | 415 | 77 | 3 | 1 | 402 | 1 | 414 | 0.0 | 669 |
MS.gene58509.t1 | MTR_3g037340 | 58.469 | 431 | 154 | 4 | 10 | 440 | 36 | 441 | 0.0 | 546 |
MS.gene58509.t1 | MTR_4g108940 | 57.240 | 442 | 165 | 4 | 8 | 449 | 28 | 445 | 0.0 | 545 |
MS.gene58509.t1 | MTR_5g015260 | 42.526 | 388 | 181 | 7 | 79 | 431 | 66 | 446 | 8.83e-111 | 334 |
MS.gene58509.t1 | MTR_4g097240 | 39.486 | 428 | 206 | 8 | 27 | 421 | 19 | 426 | 1.93e-108 | 328 |
MS.gene58509.t1 | MTR_4g097230 | 43.466 | 352 | 160 | 6 | 107 | 424 | 69 | 415 | 1.37e-101 | 310 |
MS.gene58509.t1 | MTR_4g108950 | 49.606 | 127 | 20 | 1 | 285 | 411 | 1 | 83 | 2.66e-33 | 121 |
MS.gene58509.t1 | MTR_4g132910 | 82.051 | 39 | 7 | 0 | 357 | 395 | 582 | 620 | 2.16e-13 | 72.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58509.t1 | AT3G62720 | 77.874 | 461 | 93 | 4 | 1 | 454 | 1 | 459 | 0.0 | 763 |
MS.gene58509.t1 | AT3G62720 | 77.874 | 461 | 93 | 4 | 1 | 454 | 1 | 459 | 0.0 | 763 |
MS.gene58509.t1 | AT4G02500 | 79.914 | 463 | 81 | 3 | 1 | 454 | 1 | 460 | 0.0 | 761 |
MS.gene58509.t1 | AT1G74380 | 58.879 | 428 | 153 | 5 | 13 | 440 | 42 | 446 | 0.0 | 553 |
MS.gene58509.t1 | AT5G07720 | 58.469 | 431 | 155 | 5 | 10 | 440 | 39 | 445 | 0.0 | 551 |
MS.gene58509.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58509.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58509.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58509.t1 | AT1G18690 | 52.292 | 480 | 185 | 8 | 4 | 440 | 26 | 504 | 4.90e-180 | 513 |
MS.gene58509.t1 | AT2G22900 | 42.120 | 349 | 159 | 5 | 107 | 417 | 89 | 432 | 1.92e-96 | 297 |
MS.gene58509.t1 | AT4G37690 | 40.974 | 349 | 163 | 6 | 107 | 417 | 72 | 415 | 1.35e-94 | 292 |
MS.gene58509.t1 | AT4G38310 | 44.444 | 108 | 56 | 2 | 107 | 213 | 13 | 117 | 6.40e-28 | 107 |
Find 0 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TTATTAGGATTAATAAAATT+AGG | + | 32586:7152-7171 | MS.gene58509:intergenic | 10.0% |
!! | TAATAAAATTAGGATAATCA+GGG | + | 32586:7142-7161 | MS.gene58509:intergenic | 15.0% |
!! | TTAATAAAATTAGGATAATC+AGG | + | 32586:7143-7162 | MS.gene58509:intergenic | 15.0% |
!! | AGAATAAGATTGATTATTGT+AGG | - | 32586:7255-7274 | MS.gene58509:CDS | 20.0% |
!! | ATTATTATTTGCATGGTTAT+TGG | - | 32586:7753-7772 | MS.gene58509:CDS | 20.0% |
!! | TTATTATTTGCATGGTTATT+GGG | - | 32586:7754-7773 | MS.gene58509:CDS | 20.0% |
! | GAGAATCATTATTATTTGCA+TGG | - | 32586:7746-7765 | MS.gene58509:CDS | 25.0% |
! | TATTATTTGCATGGTTATTG+GGG | - | 32586:7755-7774 | MS.gene58509:CDS | 25.0% |
! | TGATTTATGATGAGAAGAAT+TGG | - | 32586:7498-7517 | MS.gene58509:CDS | 25.0% |
!! | GATTGAGATTTTCTATAACA+TGG | - | 32586:7286-7305 | MS.gene58509:CDS | 25.0% |
AACAAATAATGATCACCAAC+AGG | + | 32586:7224-7243 | MS.gene58509:intergenic | 30.0% | |
AACAATAGCTTCCTAATCAA+AGG | + | 32586:7353-7372 | MS.gene58509:intergenic | 30.0% | |
AATCAGATATTGCAGATGTA+TGG | - | 32586:7950-7969 | MS.gene58509:CDS | 30.0% | |
ACTTGATATTCTTGATGCTT+GGG | - | 32586:7568-7587 | MS.gene58509:CDS | 30.0% | |
AGTTCATCTTTAACATCAAG+AGG | + | 32586:8037-8056 | MS.gene58509:intergenic | 30.0% | |
ATCTGCTATGGTTTATTTGT+TGG | - | 32586:7685-7704 | MS.gene58509:CDS | 30.0% | |
ATGATTGAGAATTATCATCC+TGG | - | 32586:7803-7822 | MS.gene58509:CDS | 30.0% | |
ATTATTTGCATGGTTATTGG+GGG | - | 32586:7756-7775 | MS.gene58509:CDS | 30.0% | |
ATTGATTATTGTAGGCTTCA+TGG | - | 32586:7263-7282 | MS.gene58509:CDS | 30.0% | |
CTTGATGTTAAAGATGAACT+TGG | - | 32586:8037-8056 | MS.gene58509:CDS | 30.0% | |
TATGATGAGAAGAATTGGAT+TGG | - | 32586:7503-7522 | MS.gene58509:CDS | 30.0% | |
TGATGCTATGTTTACTGATA+TGG | - | 32586:7412-7431 | MS.gene58509:CDS | 30.0% | |
TTGATTATTGTAGGCTTCAT+GGG | - | 32586:7264-7283 | MS.gene58509:CDS | 30.0% | |
! | ATAATTTTGTGATGCATGGT+TGG | - | 32586:7468-7487 | MS.gene58509:CDS | 30.0% |
! | ATGGATCGTGCTTATAATTT+TGG | - | 32586:7923-7942 | MS.gene58509:CDS | 30.0% |
! | GATCATAATTTTGTGATGCA+TGG | - | 32586:7464-7483 | MS.gene58509:CDS | 30.0% |
!! | AATTGGATTGGTTTGAATAC+TGG | - | 32586:7515-7534 | MS.gene58509:CDS | 30.0% |
!!! | ATACTGGAAGTTTTTTGTTG+AGG | - | 32586:7531-7550 | MS.gene58509:CDS | 30.0% |
AAAAGAACACGTGGCTTATT+AGG | + | 32586:7167-7186 | MS.gene58508:intergenic | 35.0% | |
ATTGAAATTCTTCGAGAACG+CGG | + | 32586:6950-6969 | MS.gene58509:intergenic | 35.0% | |
CACTTGATATTCTTGATGCT+TGG | - | 32586:7567-7586 | MS.gene58509:CDS | 35.0% | |
TAATCACCAAATTTCCCACA+AGG | + | 32586:7878-7897 | MS.gene58509:intergenic | 35.0% | |
TGTAAACCTTGTGGGAAATT+TGG | - | 32586:7869-7888 | MS.gene58509:CDS | 35.0% | |
! | ATCCTGAAGTTGAGTTTTTG+TGG | - | 32586:7378-7397 | MS.gene58509:CDS | 35.0% |
! | ATGGTTTATTTGTTGGCAAC+TGG | - | 32586:7692-7711 | MS.gene58509:CDS | 35.0% |
! | GAGAATTATCATCCTGGTTT+TGG | - | 32586:7809-7828 | MS.gene58509:CDS | 35.0% |
! | TGGTTTATTTGTTGGCAACT+GGG | - | 32586:7693-7712 | MS.gene58509:CDS | 35.0% |
! | TTTTGTTGAGGAATTGTCAG+TGG | - | 32586:7543-7562 | MS.gene58509:CDS | 35.0% |
!! | AACTTGATAGCTTTGAAAGC+AGG | + | 32586:8073-8092 | MS.gene58509:intergenic | 35.0% |
!! | TGAGAGGTGTTTGAAACAAA+TGG | - | 32586:7904-7923 | MS.gene58509:CDS | 35.0% |
!!! | ATTTTGGGACCAAGTGTATA+AGG | + | 32586:7077-7096 | MS.gene58509:intergenic | 35.0% |
!!! | GTTATCGTTGTTGTTTTCTG+TGG | + | 32586:6973-6992 | MS.gene58509:intergenic | 35.0% |
AAACCGTGTGAAAATCCTGT+TGG | - | 32586:7206-7225 | MS.gene58509:CDS | 40.0% | |
AAGCTGGGAAGATTCTTACT+AGG | - | 32586:7624-7643 | MS.gene58509:CDS | 40.0% | |
AGCAGATGATCAATCTGCTA+TGG | - | 32586:7673-7692 | MS.gene58509:CDS | 40.0% | |
AGCTGGGAAGATTCTTACTA+GGG | - | 32586:7625-7644 | MS.gene58509:CDS | 40.0% | |
ATCCTCAAAGATGAAGAAGC+TGG | - | 32586:7023-7042 | MS.gene58509:CDS | 40.0% | |
CACCACAAAAACTCAACTTC+AGG | + | 32586:7383-7402 | MS.gene58509:intergenic | 40.0% | |
CCAGTAACTAAAAGAACACG+TGG | + | 32586:7176-7195 | MS.gene58509:intergenic | 40.0% | |
GATTGTCGAGATATCGAAAG+TGG | + | 32586:7006-7025 | MS.gene58509:intergenic | 40.0% | |
GGCTTTACTTGATGCTGAAA+TGG | - | 32586:7307-7326 | MS.gene58509:CDS | 40.0% | |
GTAGAAGAGTGAAGAGAGTT+AGG | - | 32586:7996-8015 | MS.gene58509:CDS | 40.0% | |
GTTTACTGATATGGCTTTCG+AGG | - | 32586:7421-7440 | MS.gene58509:CDS | 40.0% | |
GTTTCAAACACCTCTCAACA+GGG | + | 32586:7901-7920 | MS.gene58509:intergenic | 40.0% | |
TAGGGAGTTAAAGAATCGAC+CGG | - | 32586:7643-7662 | MS.gene58509:CDS | 40.0% | |
TCATCTCTAACCTTCCCTTT+AGG | + | 32586:7605-7624 | MS.gene58509:intergenic | 40.0% | |
TGAACGTTGTTCATCCCAAT+CGG | + | 32586:7102-7121 | MS.gene58509:intergenic | 40.0% | |
TGATCATCTGCTTCGAAAAC+CGG | + | 32586:7665-7684 | MS.gene58509:intergenic | 40.0% | |
TGTTTCAAACACCTCTCAAC+AGG | + | 32586:7902-7921 | MS.gene58509:intergenic | 40.0% | |
TTACTTGATGCTGAAATGGC+TGG | - | 32586:7311-7330 | MS.gene58509:CDS | 40.0% | |
! | ACAGGATTTTCACACGGTTT+AGG | + | 32586:7206-7225 | MS.gene58509:intergenic | 40.0% |
! | CTGAAGTTGAGTTTTTGTGG+TGG | - | 32586:7381-7400 | MS.gene58509:CDS | 40.0% |
! | TCACCAACAGGATTTTCACA+CGG | + | 32586:7212-7231 | MS.gene58509:intergenic | 40.0% |
! | TCATCCCAATCGGAGATTTT+GGG | + | 32586:7092-7111 | MS.gene58509:intergenic | 40.0% |
! | TTATTTGTTGGCAACTGGGA+GGG | - | 32586:7697-7716 | MS.gene58509:CDS | 40.0% |
! | TTCATCCCAATCGGAGATTT+TGG | + | 32586:7093-7112 | MS.gene58509:intergenic | 40.0% |
! | TTTATTTGTTGGCAACTGGG+AGG | - | 32586:7696-7715 | MS.gene58509:CDS | 40.0% |
!! | AGTTGAGTTTTTGTGGTGGA+TGG | - | 32586:7385-7404 | MS.gene58509:CDS | 40.0% |
!! | CATTGGTGACTCATTTTGTG+GGG | - | 32586:7846-7865 | MS.gene58509:CDS | 40.0% |
!! | CCACGTGTTCTTTTAGTTAC+TGG | - | 32586:7173-7192 | MS.gene58509:CDS | 40.0% |
!! | CCATTGGTGACTCATTTTGT+GGG | - | 32586:7845-7864 | MS.gene58509:CDS | 40.0% |
!!! | ATCCTGGTTTTGGTGATCAT+AGG | - | 32586:7819-7838 | MS.gene58509:CDS | 40.0% |
!!! | ATGCTGAAATGGCTGGTTTT+TGG | - | 32586:7318-7337 | MS.gene58509:CDS | 40.0% |
!!! | TGCTGAAATGGCTGGTTTTT+GGG | - | 32586:7319-7338 | MS.gene58509:CDS | 40.0% |
CACCAGCTTCTTCATCTTTG+AGG | + | 32586:7028-7047 | MS.gene58509:intergenic | 45.0% | |
CACCTATGATCACCAAAACC+AGG | + | 32586:7824-7843 | MS.gene58509:intergenic | 45.0% | |
CCAAACACGCCTTATACACT+TGG | - | 32586:7065-7084 | MS.gene58509:CDS | 45.0% | |
CCAAGTGTATAAGGCGTGTT+TGG | + | 32586:7068-7087 | MS.gene58509:intergenic | 45.0% | |
CCCACAAAATGAGTCACCAA+TGG | + | 32586:7848-7867 | MS.gene58509:intergenic | 45.0% | |
GGAAGGTTAGAGATGAAGCT+GGG | - | 32586:7609-7628 | MS.gene58509:CDS | 45.0% | |
GGGCTAAGCTTCCTTTGATT+AGG | - | 32586:7339-7358 | MS.gene58509:CDS | 45.0% | |
TGATCCTTATAACGCTCCCA+CGG | + | 32586:7449-7468 | MS.gene58509:intergenic | 45.0% | |
TGGTCCCAAAATCTCCGATT+GGG | - | 32586:7085-7104 | MS.gene58509:CDS | 45.0% | |
TTGGTCCCAAAATCTCCGAT+TGG | - | 32586:7084-7103 | MS.gene58509:CDS | 45.0% | |
TTGTGGGGTGTAAACCTTGT+GGG | - | 32586:7861-7880 | MS.gene58509:CDS | 45.0% | |
TTTGTGGGGTGTAAACCTTG+TGG | - | 32586:7860-7879 | MS.gene58509:CDS | 45.0% | |
! | GCATGGTTATTGGGGGATTT+TGG | - | 32586:7763-7782 | MS.gene58509:CDS | 45.0% |
! | TTGGTGATTACCCTGTTGAG+AGG | - | 32586:7888-7907 | MS.gene58509:CDS | 45.0% |
!! | ATCTCGTTGAGGTCTTGTTC+TGG | + | 32586:6885-6904 | MS.gene58509:intergenic | 45.0% |
!! | GCCATTGGTGACTCATTTTG+TGG | - | 32586:7844-7863 | MS.gene58509:CDS | 45.0% |
!! | TTCTGGAGTTCCGAATTTGC+CGG | + | 32586:6868-6887 | MS.gene58509:intergenic | 45.0% |
!!! | CTGGTTTTGGTGATCATAGG+TGG | - | 32586:7822-7841 | MS.gene58509:CDS | 45.0% |
AATTCTTCGAGAACGCGGTG+AGG | + | 32586:6945-6964 | MS.gene58509:intergenic | 50.0% | |
ACCTTCCCTTTAGGTCCCAT+TGG | + | 32586:7596-7615 | MS.gene58509:intergenic | 50.0% | |
ATATGGCTTTCGAGGTTCCG+TGG | - | 32586:7429-7448 | MS.gene58509:CDS | 50.0% | |
CACGTGAGTAGAGCTGTTGA+CGG | + | 32586:6908-6927 | MS.gene58509:intergenic | 50.0% | |
CTTGATGCTTGGGCTCCAAT+GGG | - | 32586:7578-7597 | MS.gene58509:CDS | 50.0% | |
GGGAAGGTTAGAGATGAAGC+TGG | - | 32586:7608-7627 | MS.gene58509:CDS | 50.0% | |
GGGATGAACAACGTTCATCG+TGG | - | 32586:7105-7124 | MS.gene58509:CDS | 50.0% | |
TATGGCTTTCGAGGTTCCGT+GGG | - | 32586:7430-7449 | MS.gene58509:CDS | 50.0% | |
TCCAATGGGACCTAAAGGGA+AGG | - | 32586:7592-7611 | MS.gene58509:CDS | 50.0% | |
TCTTGATGCTTGGGCTCCAA+TGG | - | 32586:7577-7596 | MS.gene58509:CDS | 50.0% | |
TGGTGATCATAGGTGGCCAT+TGG | - | 32586:7829-7848 | MS.gene58509:CDS | 50.0% | |
AACAGCTCTACTCACGTGGC+CGG | - | 32586:6910-6929 | MS.gene58509:CDS | 55.0% | |
ATCGTCCTCCGTGGCACTAT+CGG | - | 32586:6840-6859 | MS.gene58509:CDS | 55.0% | |
CGTCAACAGCTCTACTCACG+TGG | - | 32586:6906-6925 | MS.gene58509:CDS | 55.0% | |
GCAACTGGGAGGGAACAATG+GGG | - | 32586:7707-7726 | MS.gene58509:CDS | 55.0% | |
GGCAACTGGGAGGGAACAAT+GGG | - | 32586:7706-7725 | MS.gene58509:CDS | 55.0% | |
GGGCTCCAATGGGACCTAAA+GGG | - | 32586:7588-7607 | MS.gene58509:CDS | 55.0% | |
GGTGAGGAAGAGACAGAGGA+AGG | + | 32586:6817-6836 | MS.gene58509:intergenic | 55.0% | |
TGACGGTGAGGAAGAGACAG+AGG | + | 32586:6821-6840 | MS.gene58509:intergenic | 55.0% | |
TGGCAACTGGGAGGGAACAA+TGG | - | 32586:7705-7724 | MS.gene58509:CDS | 55.0% | |
TGGGCTCCAATGGGACCTAA+AGG | - | 32586:7587-7606 | MS.gene58509:CDS | 55.0% | |
! | GCTGTTGACGGATCTCGTTG+AGG | + | 32586:6896-6915 | MS.gene58509:intergenic | 55.0% |
!! | ACTATCGGCGCCGGCAAATT+CGG | - | 32586:6855-6874 | MS.gene58509:CDS | 55.0% |
!! | GGTTCCGTGGGAGCGTTATA+AGG | - | 32586:7442-7461 | MS.gene58509:CDS | 55.0% |
ACTGGGAGGGAACAATGGGG+TGG | - | 32586:7710-7729 | MS.gene58509:CDS | 60.0% | |
AGTGCCACGGAGGACGATGA+CGG | + | 32586:6838-6857 | MS.gene58509:intergenic | 60.0% | |
CTGGGAGGGAACAATGGGGT+GGG | - | 32586:7711-7730 | MS.gene58509:CDS | 60.0% | |
GGAATGCGCGCTGCATCTGA+CGG | + | 32586:6779-6798 | MS.gene58509:intergenic | 60.0% | |
!! | AGAGGAAGGTGAGAGTGCCG+CGG | + | 32586:6803-6822 | MS.gene58509:intergenic | 60.0% |
CGCGCTGCATCTGACGGAGA+CGG | + | 32586:6773-6792 | MS.gene58509:intergenic | 65.0% | |
CTCACCGTCATCGTCCTCCG+TGG | - | 32586:6831-6850 | MS.gene58509:CDS | 65.0% | |
! | CACGGAGGACGATGACGGTG+AGG | + | 32586:6833-6852 | MS.gene58509:intergenic | 65.0% |
ATGCAGCGCGCATTCCGCCG+CGG | - | 32586:6783-6802 | MS.gene58509:CDS | 70.0% | |
CTCCGTGGCACTATCGGCGC+CGG | - | 32586:6846-6865 | MS.gene58509:CDS | 70.0% | |
!! | GGAAGGTGAGAGTGCCGCGG+CGG | + | 32586:6800-6819 | MS.gene58509:intergenic | 70.0% |
!! | TGCCGGCGCCGATAGTGCCA+CGG | + | 32586:6851-6870 | MS.gene58509:intergenic | 70.0% |
CGCGGTGAGGCTCAACGCGC+CGG | + | 32586:6932-6951 | MS.gene58509:intergenic | 75.0% | |
!! | CGGCGCCGATAGTGCCACGG+AGG | + | 32586:6848-6867 | MS.gene58509:intergenic | 75.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
32586 | gene | 6744 | 8108 | 6744 | ID=MS.gene58509 |
32586 | mRNA | 6744 | 8108 | 6744 | ID=MS.gene58509.t1;Parent=MS.gene58509 |
32586 | exon | 6744 | 8108 | 6744 | ID=MS.gene58509.t1.exon1;Parent=MS.gene58509.t1 |
32586 | CDS | 6744 | 8108 | 6744 | ID=cds.MS.gene58509.t1;Parent=MS.gene58509.t1 |
Gene Sequence |
Protein sequence |