AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58509


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58509.t1 MTR_4g119880 98.899 454 5 0 1 454 1 454 0.0 943
MS.gene58509.t1 MTR_7g108675 78.373 467 87 3 1 454 1 466 0.0 754
MS.gene58509.t1 MTR_8g058553 78.072 415 77 3 1 402 1 414 0.0 669
MS.gene58509.t1 MTR_3g037340 58.469 431 154 4 10 440 36 441 0.0 546
MS.gene58509.t1 MTR_4g108940 57.240 442 165 4 8 449 28 445 0.0 545
MS.gene58509.t1 MTR_5g015260 42.526 388 181 7 79 431 66 446 8.83e-111 334
MS.gene58509.t1 MTR_4g097240 39.486 428 206 8 27 421 19 426 1.93e-108 328
MS.gene58509.t1 MTR_4g097230 43.466 352 160 6 107 424 69 415 1.37e-101 310
MS.gene58509.t1 MTR_4g108950 49.606 127 20 1 285 411 1 83 2.66e-33 121
MS.gene58509.t1 MTR_4g132910 82.051 39 7 0 357 395 582 620 2.16e-13 72.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58509.t1 AT3G62720 77.874 461 93 4 1 454 1 459 0.0 763
MS.gene58509.t1 AT3G62720 77.874 461 93 4 1 454 1 459 0.0 763
MS.gene58509.t1 AT4G02500 79.914 463 81 3 1 454 1 460 0.0 761
MS.gene58509.t1 AT1G74380 58.879 428 153 5 13 440 42 446 0.0 553
MS.gene58509.t1 AT5G07720 58.469 431 155 5 10 440 39 445 0.0 551
MS.gene58509.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58509.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58509.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58509.t1 AT1G18690 52.292 480 185 8 4 440 26 504 4.90e-180 513
MS.gene58509.t1 AT2G22900 42.120 349 159 5 107 417 89 432 1.92e-96 297
MS.gene58509.t1 AT4G37690 40.974 349 163 6 107 417 72 415 1.35e-94 292
MS.gene58509.t1 AT4G38310 44.444 108 56 2 107 213 13 117 6.40e-28 107

Find 0 sgRNAs with CRISPR-Local

Find 130 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATTAGGATTAATAAAATT+AGG + 32586:7152-7171 MS.gene58509:intergenic 10.0%
!! TAATAAAATTAGGATAATCA+GGG + 32586:7142-7161 MS.gene58509:intergenic 15.0%
!! TTAATAAAATTAGGATAATC+AGG + 32586:7143-7162 MS.gene58509:intergenic 15.0%
!! AGAATAAGATTGATTATTGT+AGG - 32586:7255-7274 MS.gene58509:CDS 20.0%
!! ATTATTATTTGCATGGTTAT+TGG - 32586:7753-7772 MS.gene58509:CDS 20.0%
!! TTATTATTTGCATGGTTATT+GGG - 32586:7754-7773 MS.gene58509:CDS 20.0%
! GAGAATCATTATTATTTGCA+TGG - 32586:7746-7765 MS.gene58509:CDS 25.0%
! TATTATTTGCATGGTTATTG+GGG - 32586:7755-7774 MS.gene58509:CDS 25.0%
! TGATTTATGATGAGAAGAAT+TGG - 32586:7498-7517 MS.gene58509:CDS 25.0%
!! GATTGAGATTTTCTATAACA+TGG - 32586:7286-7305 MS.gene58509:CDS 25.0%
AACAAATAATGATCACCAAC+AGG + 32586:7224-7243 MS.gene58509:intergenic 30.0%
AACAATAGCTTCCTAATCAA+AGG + 32586:7353-7372 MS.gene58509:intergenic 30.0%
AATCAGATATTGCAGATGTA+TGG - 32586:7950-7969 MS.gene58509:CDS 30.0%
ACTTGATATTCTTGATGCTT+GGG - 32586:7568-7587 MS.gene58509:CDS 30.0%
AGTTCATCTTTAACATCAAG+AGG + 32586:8037-8056 MS.gene58509:intergenic 30.0%
ATCTGCTATGGTTTATTTGT+TGG - 32586:7685-7704 MS.gene58509:CDS 30.0%
ATGATTGAGAATTATCATCC+TGG - 32586:7803-7822 MS.gene58509:CDS 30.0%
ATTATTTGCATGGTTATTGG+GGG - 32586:7756-7775 MS.gene58509:CDS 30.0%
ATTGATTATTGTAGGCTTCA+TGG - 32586:7263-7282 MS.gene58509:CDS 30.0%
CTTGATGTTAAAGATGAACT+TGG - 32586:8037-8056 MS.gene58509:CDS 30.0%
TATGATGAGAAGAATTGGAT+TGG - 32586:7503-7522 MS.gene58509:CDS 30.0%
TGATGCTATGTTTACTGATA+TGG - 32586:7412-7431 MS.gene58509:CDS 30.0%
TTGATTATTGTAGGCTTCAT+GGG - 32586:7264-7283 MS.gene58509:CDS 30.0%
! ATAATTTTGTGATGCATGGT+TGG - 32586:7468-7487 MS.gene58509:CDS 30.0%
! ATGGATCGTGCTTATAATTT+TGG - 32586:7923-7942 MS.gene58509:CDS 30.0%
! GATCATAATTTTGTGATGCA+TGG - 32586:7464-7483 MS.gene58509:CDS 30.0%
!! AATTGGATTGGTTTGAATAC+TGG - 32586:7515-7534 MS.gene58509:CDS 30.0%
!!! ATACTGGAAGTTTTTTGTTG+AGG - 32586:7531-7550 MS.gene58509:CDS 30.0%
AAAAGAACACGTGGCTTATT+AGG + 32586:7167-7186 MS.gene58508:intergenic 35.0%
ATTGAAATTCTTCGAGAACG+CGG + 32586:6950-6969 MS.gene58509:intergenic 35.0%
CACTTGATATTCTTGATGCT+TGG - 32586:7567-7586 MS.gene58509:CDS 35.0%
TAATCACCAAATTTCCCACA+AGG + 32586:7878-7897 MS.gene58509:intergenic 35.0%
TGTAAACCTTGTGGGAAATT+TGG - 32586:7869-7888 MS.gene58509:CDS 35.0%
! ATCCTGAAGTTGAGTTTTTG+TGG - 32586:7378-7397 MS.gene58509:CDS 35.0%
! ATGGTTTATTTGTTGGCAAC+TGG - 32586:7692-7711 MS.gene58509:CDS 35.0%
! GAGAATTATCATCCTGGTTT+TGG - 32586:7809-7828 MS.gene58509:CDS 35.0%
! TGGTTTATTTGTTGGCAACT+GGG - 32586:7693-7712 MS.gene58509:CDS 35.0%
! TTTTGTTGAGGAATTGTCAG+TGG - 32586:7543-7562 MS.gene58509:CDS 35.0%
!! AACTTGATAGCTTTGAAAGC+AGG + 32586:8073-8092 MS.gene58509:intergenic 35.0%
!! TGAGAGGTGTTTGAAACAAA+TGG - 32586:7904-7923 MS.gene58509:CDS 35.0%
!!! ATTTTGGGACCAAGTGTATA+AGG + 32586:7077-7096 MS.gene58509:intergenic 35.0%
!!! GTTATCGTTGTTGTTTTCTG+TGG + 32586:6973-6992 MS.gene58509:intergenic 35.0%
AAACCGTGTGAAAATCCTGT+TGG - 32586:7206-7225 MS.gene58509:CDS 40.0%
AAGCTGGGAAGATTCTTACT+AGG - 32586:7624-7643 MS.gene58509:CDS 40.0%
AGCAGATGATCAATCTGCTA+TGG - 32586:7673-7692 MS.gene58509:CDS 40.0%
AGCTGGGAAGATTCTTACTA+GGG - 32586:7625-7644 MS.gene58509:CDS 40.0%
ATCCTCAAAGATGAAGAAGC+TGG - 32586:7023-7042 MS.gene58509:CDS 40.0%
CACCACAAAAACTCAACTTC+AGG + 32586:7383-7402 MS.gene58509:intergenic 40.0%
CCAGTAACTAAAAGAACACG+TGG + 32586:7176-7195 MS.gene58509:intergenic 40.0%
GATTGTCGAGATATCGAAAG+TGG + 32586:7006-7025 MS.gene58509:intergenic 40.0%
GGCTTTACTTGATGCTGAAA+TGG - 32586:7307-7326 MS.gene58509:CDS 40.0%
GTAGAAGAGTGAAGAGAGTT+AGG - 32586:7996-8015 MS.gene58509:CDS 40.0%
GTTTACTGATATGGCTTTCG+AGG - 32586:7421-7440 MS.gene58509:CDS 40.0%
GTTTCAAACACCTCTCAACA+GGG + 32586:7901-7920 MS.gene58509:intergenic 40.0%
TAGGGAGTTAAAGAATCGAC+CGG - 32586:7643-7662 MS.gene58509:CDS 40.0%
TCATCTCTAACCTTCCCTTT+AGG + 32586:7605-7624 MS.gene58509:intergenic 40.0%
TGAACGTTGTTCATCCCAAT+CGG + 32586:7102-7121 MS.gene58509:intergenic 40.0%
TGATCATCTGCTTCGAAAAC+CGG + 32586:7665-7684 MS.gene58509:intergenic 40.0%
TGTTTCAAACACCTCTCAAC+AGG + 32586:7902-7921 MS.gene58509:intergenic 40.0%
TTACTTGATGCTGAAATGGC+TGG - 32586:7311-7330 MS.gene58509:CDS 40.0%
! ACAGGATTTTCACACGGTTT+AGG + 32586:7206-7225 MS.gene58509:intergenic 40.0%
! CTGAAGTTGAGTTTTTGTGG+TGG - 32586:7381-7400 MS.gene58509:CDS 40.0%
! TCACCAACAGGATTTTCACA+CGG + 32586:7212-7231 MS.gene58509:intergenic 40.0%
! TCATCCCAATCGGAGATTTT+GGG + 32586:7092-7111 MS.gene58509:intergenic 40.0%
! TTATTTGTTGGCAACTGGGA+GGG - 32586:7697-7716 MS.gene58509:CDS 40.0%
! TTCATCCCAATCGGAGATTT+TGG + 32586:7093-7112 MS.gene58509:intergenic 40.0%
! TTTATTTGTTGGCAACTGGG+AGG - 32586:7696-7715 MS.gene58509:CDS 40.0%
!! AGTTGAGTTTTTGTGGTGGA+TGG - 32586:7385-7404 MS.gene58509:CDS 40.0%
!! CATTGGTGACTCATTTTGTG+GGG - 32586:7846-7865 MS.gene58509:CDS 40.0%
!! CCACGTGTTCTTTTAGTTAC+TGG - 32586:7173-7192 MS.gene58509:CDS 40.0%
!! CCATTGGTGACTCATTTTGT+GGG - 32586:7845-7864 MS.gene58509:CDS 40.0%
!!! ATCCTGGTTTTGGTGATCAT+AGG - 32586:7819-7838 MS.gene58509:CDS 40.0%
!!! ATGCTGAAATGGCTGGTTTT+TGG - 32586:7318-7337 MS.gene58509:CDS 40.0%
!!! TGCTGAAATGGCTGGTTTTT+GGG - 32586:7319-7338 MS.gene58509:CDS 40.0%
CACCAGCTTCTTCATCTTTG+AGG + 32586:7028-7047 MS.gene58509:intergenic 45.0%
CACCTATGATCACCAAAACC+AGG + 32586:7824-7843 MS.gene58509:intergenic 45.0%
CCAAACACGCCTTATACACT+TGG - 32586:7065-7084 MS.gene58509:CDS 45.0%
CCAAGTGTATAAGGCGTGTT+TGG + 32586:7068-7087 MS.gene58509:intergenic 45.0%
CCCACAAAATGAGTCACCAA+TGG + 32586:7848-7867 MS.gene58509:intergenic 45.0%
GGAAGGTTAGAGATGAAGCT+GGG - 32586:7609-7628 MS.gene58509:CDS 45.0%
GGGCTAAGCTTCCTTTGATT+AGG - 32586:7339-7358 MS.gene58509:CDS 45.0%
TGATCCTTATAACGCTCCCA+CGG + 32586:7449-7468 MS.gene58509:intergenic 45.0%
TGGTCCCAAAATCTCCGATT+GGG - 32586:7085-7104 MS.gene58509:CDS 45.0%
TTGGTCCCAAAATCTCCGAT+TGG - 32586:7084-7103 MS.gene58509:CDS 45.0%
TTGTGGGGTGTAAACCTTGT+GGG - 32586:7861-7880 MS.gene58509:CDS 45.0%
TTTGTGGGGTGTAAACCTTG+TGG - 32586:7860-7879 MS.gene58509:CDS 45.0%
! GCATGGTTATTGGGGGATTT+TGG - 32586:7763-7782 MS.gene58509:CDS 45.0%
! TTGGTGATTACCCTGTTGAG+AGG - 32586:7888-7907 MS.gene58509:CDS 45.0%
!! ATCTCGTTGAGGTCTTGTTC+TGG + 32586:6885-6904 MS.gene58509:intergenic 45.0%
!! GCCATTGGTGACTCATTTTG+TGG - 32586:7844-7863 MS.gene58509:CDS 45.0%
!! TTCTGGAGTTCCGAATTTGC+CGG + 32586:6868-6887 MS.gene58509:intergenic 45.0%
!!! CTGGTTTTGGTGATCATAGG+TGG - 32586:7822-7841 MS.gene58509:CDS 45.0%
AATTCTTCGAGAACGCGGTG+AGG + 32586:6945-6964 MS.gene58509:intergenic 50.0%
ACCTTCCCTTTAGGTCCCAT+TGG + 32586:7596-7615 MS.gene58509:intergenic 50.0%
ATATGGCTTTCGAGGTTCCG+TGG - 32586:7429-7448 MS.gene58509:CDS 50.0%
CACGTGAGTAGAGCTGTTGA+CGG + 32586:6908-6927 MS.gene58509:intergenic 50.0%
CTTGATGCTTGGGCTCCAAT+GGG - 32586:7578-7597 MS.gene58509:CDS 50.0%
GGGAAGGTTAGAGATGAAGC+TGG - 32586:7608-7627 MS.gene58509:CDS 50.0%
GGGATGAACAACGTTCATCG+TGG - 32586:7105-7124 MS.gene58509:CDS 50.0%
TATGGCTTTCGAGGTTCCGT+GGG - 32586:7430-7449 MS.gene58509:CDS 50.0%
TCCAATGGGACCTAAAGGGA+AGG - 32586:7592-7611 MS.gene58509:CDS 50.0%
TCTTGATGCTTGGGCTCCAA+TGG - 32586:7577-7596 MS.gene58509:CDS 50.0%
TGGTGATCATAGGTGGCCAT+TGG - 32586:7829-7848 MS.gene58509:CDS 50.0%
AACAGCTCTACTCACGTGGC+CGG - 32586:6910-6929 MS.gene58509:CDS 55.0%
ATCGTCCTCCGTGGCACTAT+CGG - 32586:6840-6859 MS.gene58509:CDS 55.0%
CGTCAACAGCTCTACTCACG+TGG - 32586:6906-6925 MS.gene58509:CDS 55.0%
GCAACTGGGAGGGAACAATG+GGG - 32586:7707-7726 MS.gene58509:CDS 55.0%
GGCAACTGGGAGGGAACAAT+GGG - 32586:7706-7725 MS.gene58509:CDS 55.0%
GGGCTCCAATGGGACCTAAA+GGG - 32586:7588-7607 MS.gene58509:CDS 55.0%
GGTGAGGAAGAGACAGAGGA+AGG + 32586:6817-6836 MS.gene58509:intergenic 55.0%
TGACGGTGAGGAAGAGACAG+AGG + 32586:6821-6840 MS.gene58509:intergenic 55.0%
TGGCAACTGGGAGGGAACAA+TGG - 32586:7705-7724 MS.gene58509:CDS 55.0%
TGGGCTCCAATGGGACCTAA+AGG - 32586:7587-7606 MS.gene58509:CDS 55.0%
! GCTGTTGACGGATCTCGTTG+AGG + 32586:6896-6915 MS.gene58509:intergenic 55.0%
!! ACTATCGGCGCCGGCAAATT+CGG - 32586:6855-6874 MS.gene58509:CDS 55.0%
!! GGTTCCGTGGGAGCGTTATA+AGG - 32586:7442-7461 MS.gene58509:CDS 55.0%
ACTGGGAGGGAACAATGGGG+TGG - 32586:7710-7729 MS.gene58509:CDS 60.0%
AGTGCCACGGAGGACGATGA+CGG + 32586:6838-6857 MS.gene58509:intergenic 60.0%
CTGGGAGGGAACAATGGGGT+GGG - 32586:7711-7730 MS.gene58509:CDS 60.0%
GGAATGCGCGCTGCATCTGA+CGG + 32586:6779-6798 MS.gene58509:intergenic 60.0%
!! AGAGGAAGGTGAGAGTGCCG+CGG + 32586:6803-6822 MS.gene58509:intergenic 60.0%
CGCGCTGCATCTGACGGAGA+CGG + 32586:6773-6792 MS.gene58509:intergenic 65.0%
CTCACCGTCATCGTCCTCCG+TGG - 32586:6831-6850 MS.gene58509:CDS 65.0%
! CACGGAGGACGATGACGGTG+AGG + 32586:6833-6852 MS.gene58509:intergenic 65.0%
ATGCAGCGCGCATTCCGCCG+CGG - 32586:6783-6802 MS.gene58509:CDS 70.0%
CTCCGTGGCACTATCGGCGC+CGG - 32586:6846-6865 MS.gene58509:CDS 70.0%
!! GGAAGGTGAGAGTGCCGCGG+CGG + 32586:6800-6819 MS.gene58509:intergenic 70.0%
!! TGCCGGCGCCGATAGTGCCA+CGG + 32586:6851-6870 MS.gene58509:intergenic 70.0%
CGCGGTGAGGCTCAACGCGC+CGG + 32586:6932-6951 MS.gene58509:intergenic 75.0%
!! CGGCGCCGATAGTGCCACGG+AGG + 32586:6848-6867 MS.gene58509:intergenic 75.0%


Chromosome Type Strat End Strand Name
32586 gene 6744 8108 6744 ID=MS.gene58509
32586 mRNA 6744 8108 6744 ID=MS.gene58509.t1;Parent=MS.gene58509
32586 exon 6744 8108 6744 ID=MS.gene58509.t1.exon1;Parent=MS.gene58509.t1
32586 CDS 6744 8108 6744 ID=cds.MS.gene58509.t1;Parent=MS.gene58509.t1
Gene Sequence

>MS.gene58509

ATGCTGGAGCGGTGTCTCGGATCTCGCCGTCTCCGTCAGATGCAGCGCGCATTCCGCCGCGGCACTCTCACCTTCCTCTGTCTCTTCCTCACCGTCATCGTCCTCCGTGGCACTATCGGCGCCGGCAAATTCGGAACTCCAGAACAAGACCTCAACGAGATCCGTCAACAGCTCTACTCACGTGGCCGGCGCGTTGAGCCTCACCGCGTTCTCGAAGAATTTCAATCCACAGAAAACAACAACGATAACAACAACTACGCCACTTTCGATATCTCGACAATCCTCAAAGATGAAGAAGCTGGTGATGATGAAAAACGCGATCCAAACACGCCTTATACACTTGGTCCCAAAATCTCCGATTGGGATGAACAACGTTCATCGTGGCTGAGTAACAACCCTGATTATCCTAATTTTATTAATCCTAATAAGCCACGTGTTCTTTTAGTTACTGGTTCTTCACCTAAACCGTGTGAAAATCCTGTTGGTGATCATTATTTGTTGAAATCAATTAAGAATAAGATTGATTATTGTAGGCTTCATGGGATTGAGATTTTCTATAACATGGCTTTACTTGATGCTGAAATGGCTGGTTTTTGGGCTAAGCTTCCTTTGATTAGGAAGCTATTGTTGTCGCATCCTGAAGTTGAGTTTTTGTGGTGGATGGATAGTGATGCTATGTTTACTGATATGGCTTTCGAGGTTCCGTGGGAGCGTTATAAGGATCATAATTTTGTGATGCATGGTTGGAATGAGATGATTTATGATGAGAAGAATTGGATTGGTTTGAATACTGGAAGTTTTTTGTTGAGGAATTGTCAGTGGTCACTTGATATTCTTGATGCTTGGGCTCCAATGGGACCTAAAGGGAAGGTTAGAGATGAAGCTGGGAAGATTCTTACTAGGGAGTTAAAGAATCGACCGGTTTTCGAAGCAGATGATCAATCTGCTATGGTTTATTTGTTGGCAACTGGGAGGGAACAATGGGGTGGGAAAGTTTATCTTGAGAATCATTATTATTTGCATGGTTATTGGGGGATTTTGGTTGATAGATATGAAGAGATGATTGAGAATTATCATCCTGGTTTTGGTGATCATAGGTGGCCATTGGTGACTCATTTTGTGGGGTGTAAACCTTGTGGGAAATTTGGTGATTACCCTGTTGAGAGGTGTTTGAAACAAATGGATCGTGCTTATAATTTTGGTGATAATCAGATATTGCAGATGTATGGTTTTACTCATAAGTCACTTGCTAGTAGAAGAGTGAAGAGAGTTAGGAATGAGAGTAGTAATCCTCTTGATGTTAAAGATGAACTTGGATTGCTTCATCCTGCTTTCAAAGCTATCAAGTTGCCAACTTCTTCTTGA

Protein sequence

>MS.gene58509.t1

MLERCLGSRRLRQMQRAFRRGTLTFLCLFLTVIVLRGTIGAGKFGTPEQDLNEIRQQLYSRGRRVEPHRVLEEFQSTENNNDNNNYATFDISTILKDEEAGDDEKRDPNTPYTLGPKISDWDEQRSSWLSNNPDYPNFINPNKPRVLLVTGSSPKPCENPVGDHYLLKSIKNKIDYCRLHGIEIFYNMALLDAEMAGFWAKLPLIRKLLLSHPEVEFLWWMDSDAMFTDMAFEVPWERYKDHNFVMHGWNEMIYDEKNWIGLNTGSFLLRNCQWSLDILDAWAPMGPKGKVRDEAGKILTRELKNRPVFEADDQSAMVYLLATGREQWGGKVYLENHYYLHGYWGILVDRYEEMIENYHPGFGDHRWPLVTHFVGCKPCGKFGDYPVERCLKQMDRAYNFGDNQILQMYGFTHKSLASRRVKRVRNESSNPLDVKDELGLLHPAFKAIKLPTSS