Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58520.t1 | XP_003613543.1 | 92.9 | 280 | 20 | 0 | 1 | 280 | 1 | 280 | 2.00E-148 | 535 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58520.t1 | Q9UDY4 | 34.1 | 340 | 145 | 6 | 5 | 274 | 4 | 334 | 6.0e-48 | 192.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58520.t1 | G7K8E9 | 92.9 | 280 | 20 | 0 | 1 | 280 | 1 | 280 | 1.5e-148 | 535.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene057611 | MS.gene58520 | 0.812704 | 3.71E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58520.t1 | MTR_5g037880 | 92.857 | 280 | 20 | 0 | 1 | 280 | 1 | 280 | 0.0 | 536 |
| MS.gene58520.t1 | MTR_4g015840 | 56.250 | 176 | 77 | 0 | 101 | 276 | 88 | 263 | 3.12e-69 | 215 |
| MS.gene58520.t1 | MTR_4g015840 | 54.497 | 189 | 85 | 1 | 87 | 275 | 152 | 339 | 2.11e-68 | 216 |
| MS.gene58520.t1 | MTR_4g015840 | 52.000 | 75 | 29 | 1 | 5 | 79 | 4 | 71 | 9.47e-18 | 82.0 |
| MS.gene58520.t1 | MTR_2g090705 | 53.684 | 190 | 84 | 1 | 89 | 274 | 145 | 334 | 6.14e-68 | 214 |
| MS.gene58520.t1 | MTR_2g090705 | 53.333 | 75 | 28 | 1 | 5 | 79 | 4 | 71 | 6.84e-17 | 79.7 |
| MS.gene58520.t1 | MTR_2g014470 | 54.237 | 177 | 81 | 0 | 98 | 274 | 162 | 338 | 1.95e-66 | 210 |
| MS.gene58520.t1 | MTR_2g014470 | 58.667 | 75 | 24 | 1 | 5 | 79 | 4 | 71 | 7.76e-20 | 88.2 |
| MS.gene58520.t1 | MTR_4g078850 | 53.073 | 179 | 84 | 0 | 100 | 278 | 169 | 347 | 8.68e-66 | 209 |
| MS.gene58520.t1 | MTR_4g078850 | 52.000 | 75 | 29 | 1 | 5 | 79 | 4 | 71 | 1.76e-17 | 81.6 |
| MS.gene58520.t1 | MTR_3g108020 | 54.023 | 174 | 80 | 0 | 101 | 274 | 152 | 325 | 6.78e-62 | 198 |
| MS.gene58520.t1 | MTR_3g108020 | 54.667 | 75 | 27 | 1 | 5 | 79 | 4 | 71 | 1.62e-18 | 84.3 |
| MS.gene58520.t1 | MTR_2g014480 | 53.086 | 162 | 73 | 1 | 101 | 259 | 169 | 330 | 9.95e-56 | 183 |
| MS.gene58520.t1 | MTR_2g014480 | 53.012 | 83 | 30 | 2 | 5 | 87 | 4 | 77 | 6.04e-18 | 82.8 |
| MS.gene58520.t1 | MTR_3g088140 | 46.927 | 179 | 94 | 1 | 101 | 278 | 179 | 357 | 2.30e-53 | 177 |
| MS.gene58520.t1 | MTR_3g437840 | 50.355 | 141 | 70 | 0 | 135 | 275 | 22 | 162 | 2.58e-48 | 158 |
| MS.gene58520.t1 | MTR_2g006890 | 42.697 | 178 | 101 | 1 | 100 | 276 | 200 | 377 | 8.27e-43 | 150 |
| MS.gene58520.t1 | MTR_3g437360 | 48.667 | 150 | 74 | 2 | 105 | 252 | 183 | 331 | 7.16e-38 | 136 |
| MS.gene58520.t1 | MTR_7g109340 | 29.697 | 330 | 158 | 10 | 6 | 274 | 27 | 343 | 3.64e-30 | 116 |
| MS.gene58520.t1 | MTR_2g087660 | 37.589 | 141 | 86 | 1 | 136 | 274 | 218 | 358 | 2.77e-28 | 112 |
| MS.gene58520.t1 | MTR_8g006430 | 36.735 | 147 | 89 | 2 | 132 | 274 | 216 | 362 | 7.76e-27 | 108 |
| MS.gene58520.t1 | MTR_4g050420 | 35.461 | 141 | 89 | 1 | 136 | 274 | 216 | 356 | 2.55e-26 | 107 |
| MS.gene58520.t1 | MTR_2g087660 | 36.842 | 95 | 58 | 1 | 136 | 228 | 218 | 312 | 1.02e-17 | 82.0 |
| MS.gene58520.t1 | MTR_7g112360 | 44.286 | 70 | 35 | 1 | 6 | 75 | 17 | 82 | 1.54e-14 | 70.1 |
| MS.gene58520.t1 | MTR_7g112360 | 44.286 | 70 | 35 | 1 | 6 | 75 | 17 | 82 | 2.34e-14 | 68.6 |
| MS.gene58520.t1 | MTR_4g085070 | 39.048 | 105 | 55 | 3 | 12 | 112 | 19 | 118 | 3.27e-13 | 66.2 |
| MS.gene58520.t1 | MTR_3g437850 | 31.395 | 172 | 67 | 4 | 5 | 131 | 2 | 167 | 1.16e-12 | 65.1 |
| MS.gene58520.t1 | MTR_3g092680 | 52.000 | 50 | 24 | 0 | 227 | 276 | 12 | 61 | 1.05e-11 | 59.7 |
| MS.gene58520.t1 | MTR_7g101070 | 41.667 | 72 | 35 | 1 | 5 | 76 | 358 | 422 | 1.57e-11 | 64.7 |
| MS.gene58520.t1 | MTR_2g104030 | 39.130 | 92 | 47 | 2 | 1 | 92 | 66 | 148 | 4.05e-11 | 63.5 |
| MS.gene58520.t1 | MTR_5g065860 | 44.595 | 74 | 33 | 1 | 5 | 78 | 48 | 113 | 8.78e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58520.t1 | AT3G08910 | 44.000 | 325 | 121 | 3 | 5 | 275 | 4 | 321 | 4.36e-89 | 268 |
| MS.gene58520.t1 | AT1G59725 | 43.675 | 332 | 118 | 6 | 5 | 274 | 4 | 328 | 9.47e-79 | 242 |
| MS.gene58520.t1 | AT5G01390 | 45.000 | 280 | 138 | 3 | 5 | 275 | 4 | 276 | 2.37e-77 | 236 |
| MS.gene58520.t1 | AT4G28480 | 43.537 | 294 | 134 | 6 | 5 | 274 | 4 | 289 | 1.04e-75 | 233 |
| MS.gene58520.t1 | AT1G10350 | 58.857 | 175 | 71 | 1 | 100 | 274 | 173 | 346 | 4.07e-72 | 225 |
| MS.gene58520.t1 | AT1G10350 | 56.000 | 75 | 26 | 1 | 5 | 79 | 4 | 71 | 9.94e-20 | 87.8 |
| MS.gene58520.t1 | AT2G20560 | 56.322 | 174 | 76 | 0 | 101 | 274 | 163 | 336 | 3.73e-68 | 215 |
| MS.gene58520.t1 | AT2G20560 | 53.333 | 75 | 28 | 1 | 5 | 79 | 4 | 71 | 3.32e-18 | 83.6 |
| MS.gene58520.t1 | AT3G47940 | 51.256 | 199 | 94 | 1 | 76 | 274 | 151 | 346 | 1.31e-67 | 214 |
| MS.gene58520.t1 | AT3G47940 | 60.526 | 76 | 22 | 2 | 5 | 79 | 4 | 72 | 9.46e-20 | 88.2 |
| MS.gene58520.t1 | AT4G28480 | 52.542 | 177 | 84 | 0 | 98 | 274 | 171 | 347 | 1.19e-64 | 206 |
| MS.gene58520.t1 | AT4G28480 | 53.333 | 75 | 28 | 1 | 5 | 79 | 4 | 71 | 4.21e-18 | 83.2 |
| MS.gene58520.t1 | AT5G01390 | 53.714 | 175 | 81 | 0 | 101 | 275 | 160 | 334 | 1.29e-64 | 206 |
| MS.gene58520.t1 | AT5G01390 | 50.633 | 79 | 32 | 1 | 5 | 83 | 4 | 75 | 1.67e-17 | 81.6 |
| MS.gene58520.t1 | AT2G20550 | 51.724 | 174 | 84 | 0 | 101 | 274 | 110 | 283 | 2.23e-64 | 203 |
| MS.gene58520.t1 | AT2G20550 | 51.724 | 174 | 84 | 0 | 101 | 274 | 110 | 283 | 2.23e-64 | 203 |
| MS.gene58520.t1 | AT5G25530 | 51.724 | 174 | 84 | 0 | 101 | 274 | 164 | 337 | 1.77e-60 | 195 |
| MS.gene58520.t1 | AT5G25530 | 58.667 | 75 | 24 | 1 | 5 | 79 | 4 | 71 | 5.10e-20 | 88.6 |
| MS.gene58520.t1 | AT5G25530 | 51.724 | 174 | 84 | 0 | 101 | 274 | 172 | 345 | 1.78e-60 | 195 |
| MS.gene58520.t1 | AT5G25530 | 53.012 | 83 | 24 | 2 | 5 | 79 | 4 | 79 | 2.26e-17 | 81.3 |
| MS.gene58520.t1 | AT5G01390 | 36.429 | 280 | 123 | 4 | 5 | 275 | 4 | 237 | 4.01e-51 | 168 |
| MS.gene58520.t1 | AT1G44160 | 44.944 | 178 | 98 | 0 | 101 | 278 | 180 | 357 | 7.03e-48 | 163 |
| MS.gene58520.t1 | AT1G11040 | 42.938 | 177 | 101 | 0 | 100 | 276 | 258 | 434 | 6.66e-45 | 157 |
| MS.gene58520.t1 | AT3G62600 | 30.931 | 333 | 162 | 10 | 1 | 274 | 22 | 345 | 9.41e-32 | 120 |
| MS.gene58520.t1 | AT3G44110 | 35.172 | 145 | 92 | 1 | 136 | 278 | 218 | 362 | 2.30e-26 | 107 |
| MS.gene58520.t1 | AT5G22060 | 34.899 | 149 | 95 | 1 | 132 | 278 | 215 | 363 | 6.25e-26 | 105 |
| MS.gene58520.t1 | AT3G44110 | 36.036 | 111 | 69 | 1 | 136 | 244 | 218 | 328 | 7.90e-20 | 88.2 |
| MS.gene58520.t1 | AT5G01390 | 50.633 | 79 | 32 | 1 | 5 | 83 | 4 | 75 | 6.08e-18 | 81.3 |
| MS.gene58520.t1 | AT1G56300 | 42.857 | 70 | 36 | 1 | 6 | 75 | 14 | 79 | 1.39e-13 | 66.2 |
| MS.gene58520.t1 | AT1G56300 | 42.857 | 70 | 36 | 1 | 6 | 75 | 14 | 79 | 1.97e-13 | 67.0 |
| MS.gene58520.t1 | AT2G22360 | 29.457 | 129 | 89 | 2 | 140 | 267 | 295 | 422 | 5.79e-12 | 65.9 |
| MS.gene58520.t1 | AT3G17830 | 41.489 | 94 | 44 | 3 | 5 | 98 | 63 | 145 | 6.81e-12 | 65.9 |
| MS.gene58520.t1 | AT4G39960 | 27.737 | 137 | 97 | 2 | 140 | 275 | 301 | 436 | 8.68e-12 | 65.5 |
| MS.gene58520.t1 | AT4G39960 | 27.737 | 137 | 97 | 2 | 140 | 275 | 301 | 436 | 8.68e-12 | 65.5 |
| MS.gene58520.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.85e-11 | 62.0 |
| MS.gene58520.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.85e-11 | 62.0 |
| MS.gene58520.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.85e-11 | 62.0 |
| MS.gene58520.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.85e-11 | 62.0 |
| MS.gene58520.t1 | AT4G10130 | 41.667 | 72 | 37 | 1 | 6 | 77 | 12 | 78 | 1.85e-11 | 62.0 |
| MS.gene58520.t1 | AT5G16650 | 44.304 | 79 | 36 | 2 | 5 | 83 | 11 | 81 | 4.48e-11 | 60.8 |
| MS.gene58520.t1 | AT5G16650 | 44.304 | 79 | 36 | 2 | 5 | 83 | 11 | 81 | 4.72e-11 | 59.7 |
Find 65 sgRNAs with CRISPR-Local
Find 155 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGTATTGGTTAATCTTATC+TGG | 0.179052 | 5.3:-26028090 | None:intergenic |
| ATGAATTATTCAAATCTTCT+AGG | 0.202172 | 5.3:-26028041 | None:intergenic |
| TGGTCAATATCCTGTGAATT+TGG | 0.265052 | 5.3:+26028221 | MS.gene58520:CDS |
| TAGCCTTGAGGAGCTTTATA+AGG | 0.272865 | 5.3:+26028311 | MS.gene58520:CDS |
| TCATAGATCTGACGCTTCTT+AGG | 0.281173 | 5.3:-26028192 | None:intergenic |
| TAGACATATCACAGTTAAAT+TGG | 0.291245 | 5.3:+26030086 | MS.gene58520:CDS |
| TTTCCGTCCCTCTTGAATAT+AGG | 0.310061 | 5.3:-26029985 | None:intergenic |
| GACCGAAAAGATATCACTTC+TGG | 0.329613 | 5.3:+26030020 | MS.gene58520:CDS |
| TCAAACTCTTGTTTCCTTGA+AGG | 0.344256 | 5.3:-26028123 | None:intergenic |
| TATCCTGTGAATTTGGAAAA+TGG | 0.348490 | 5.3:+26028228 | MS.gene58520:CDS |
| AAATGGTGATGGGAGTAATA+TGG | 0.355363 | 5.3:+26028245 | MS.gene58520:CDS |
| CTAAGATTTCCTCTCTTGCT+TGG | 0.359101 | 5.3:-26030174 | None:intergenic |
| AAGGGTTCCTTGAAGGGTAT+TGG | 0.378802 | 5.3:-26028104 | None:intergenic |
| GGGAAAGGAAACTATCTTCC+AGG | 0.383769 | 5.3:+26029916 | MS.gene58520:CDS |
| TTCCTTGAAGGGTTCCTTGA+AGG | 0.386957 | 5.3:-26028111 | None:intergenic |
| AGGAATGTTCCTGATGAGTT+TGG | 0.388661 | 5.3:+26028360 | MS.gene58520:CDS |
| CAAACTCTTGTTTCCTTGAA+GGG | 0.397467 | 5.3:-26028122 | None:intergenic |
| ACAACAATTTAGTTATGAAA+TGG | 0.407609 | 5.3:+26028064 | MS.gene58520:CDS |
| TGGAGTTGTTGAGAGTGATT+TGG | 0.415245 | 5.3:+26028284 | MS.gene58520:CDS |
| GGAAACTATCTTCCAGGATC+TGG | 0.417025 | 5.3:+26029922 | MS.gene58520:CDS |
| ACCCTTCAAGGAACCCTTCA+AGG | 0.422943 | 5.3:+26028109 | MS.gene58520:CDS |
| GGAATGTTCCTGATGAGTTT+GGG | 0.422963 | 5.3:+26028361 | MS.gene58520:CDS |
| TCACTTCTGGAAGCTCTTGT+TGG | 0.439755 | 5.3:+26030033 | MS.gene58520:CDS |
| ACATCAGATGGTCCAGATCC+TGG | 0.451615 | 5.3:-26029934 | None:intergenic |
| AGCCTTGAGGAGCTTTATAA+GGG | 0.452797 | 5.3:+26028312 | MS.gene58520:CDS |
| TCCTTGAAGGGTTCCTTGAA+GGG | 0.457964 | 5.3:-26028110 | None:intergenic |
| GGAAGATAGTTTCCTTTCCC+AGG | 0.472749 | 5.3:-26029913 | None:intergenic |
| TGAATTATTCAAATCTTCTA+GGG | 0.473817 | 5.3:-26028040 | None:intergenic |
| GTGGATTACCCAAACTCATC+AGG | 0.474906 | 5.3:-26028369 | None:intergenic |
| AAAGGAAGGTGAAAGTTGTA+AGG | 0.495090 | 5.3:+26028340 | MS.gene58520:CDS |
| TTGCTTGGATCCTTTGAAAG+TGG | 0.501531 | 5.3:-26030159 | None:intergenic |
| AGATTAACCAATACCCTTCA+AGG | 0.505955 | 5.3:+26028097 | MS.gene58520:CDS |
| CTCAACATCACAACCTTGGA+TGG | 0.509868 | 5.3:+26030063 | MS.gene58520:CDS |
| GAAAAGGTCGTCGCTGATGA+AGG | 0.511756 | 5.3:+26030132 | MS.gene58520:CDS |
| TATTCAACCTGGTTGGAAGA+AGG | 0.512246 | 5.3:+26029873 | MS.gene58520:CDS |
| GGTATTGGTTAATCTTATCT+GGG | 0.512734 | 5.3:-26028089 | None:intergenic |
| ATGGAGGTTGATGAAGGTGT+TGG | 0.513440 | 5.3:+26028264 | MS.gene58520:CDS |
| TTATAGGTTTAGTAATCAGC+AGG | 0.520440 | 5.3:-26030273 | None:intergenic |
| TTCAAGGAAACAAGAGTTTG+AGG | 0.523578 | 5.3:+26028125 | MS.gene58520:CDS |
| TGAAGGTATGCCACTTTCAA+AGG | 0.534883 | 5.3:+26030149 | MS.gene58520:CDS |
| GACTCTCAACATCACAACCT+TGG | 0.539538 | 5.3:+26030059 | MS.gene58520:CDS |
| TGTGACACCGGGATATGAAA+AGG | 0.540202 | 5.3:+26030116 | MS.gene58520:CDS |
| ATTCAACCTGGTTGGAAGAA+GGG | 0.550194 | 5.3:+26029874 | MS.gene58520:CDS |
| TTTGTACCCTTCTTCCAACC+AGG | 0.551829 | 5.3:-26029880 | None:intergenic |
| GTGAATTTGGAAAATGGTGA+TGG | 0.551968 | 5.3:+26028234 | MS.gene58520:CDS |
| TGTTGTGAGGTCAAACTTGG+TGG | 0.554178 | 5.3:-26030219 | None:intergenic |
| TTATAAGGGTTGCAAAAGGA+AGG | 0.556592 | 5.3:+26028326 | MS.gene58520:CDS |
| CGATTACTACAAAACACTAA+AGG | 0.559196 | 5.3:+26028002 | MS.gene58520:CDS |
| TCCCTCTTGAATATAGGATG+TGG | 0.559598 | 5.3:-26029979 | None:intergenic |
| AGCTTTATAAGGGTTGCAAA+AGG | 0.560966 | 5.3:+26028322 | MS.gene58520:CDS |
| AGATACATATTCAACCTGGT+TGG | 0.563118 | 5.3:+26029866 | MS.gene58520:CDS |
| ATTGGATGATATTGTGACAC+CGG | 0.564217 | 5.3:+26030104 | MS.gene58520:CDS |
| AGTAATATGGAGGTTGATGA+AGG | 0.572567 | 5.3:+26028258 | MS.gene58520:CDS |
| TGTGATATGTCTACCATCCA+AGG | 0.580757 | 5.3:-26030076 | None:intergenic |
| GACCACATCCTATATTCAAG+AGG | 0.624354 | 5.3:+26029977 | MS.gene58520:CDS |
| TCAAAGGATCCAAGCAAGAG+AGG | 0.627088 | 5.3:+26030165 | MS.gene58520:CDS |
| TTGGATGATATTGTGACACC+GGG | 0.630525 | 5.3:+26030105 | MS.gene58520:CDS |
| CGTCAGATCTATGATCGCAA+TGG | 0.644762 | 5.3:+26028201 | MS.gene58520:CDS |
| TGAATTTGGAAAATGGTGAT+GGG | 0.646896 | 5.3:+26028235 | MS.gene58520:CDS |
| AACCCTTATAAAGCTCCTCA+AGG | 0.648125 | 5.3:-26028314 | None:intergenic |
| TTGAAGATACATATTCAACC+TGG | 0.655040 | 5.3:+26029862 | MS.gene58520:CDS |
| TGATTTGGTATGTAGCCTTG+AGG | 0.655134 | 5.3:+26028299 | MS.gene58520:CDS |
| CATCCTATATTCAAGAGGGA+CGG | 0.657831 | 5.3:+26029982 | MS.gene58520:CDS |
| TGGTGATGGGAGTAATATGG+AGG | 0.659763 | 5.3:+26028248 | MS.gene58520:CDS |
| ACCACATCCTATATTCAAGA+GGG | 0.666261 | 5.3:+26029978 | MS.gene58520:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | CAAAACAAAAACAAAAATTA+AGG | - | chr5.3:26028400-26028419 | None:intergenic | 15.0% |
| !! | TAATAGCAAATTAATTAGAT+TGG | - | chr5.3:26028481-26028500 | None:intergenic | 15.0% |
| !!! | AATCTAATTAATTTGCTATT+AGG | + | chr5.3:26028480-26028499 | MS.gene58520:intron | 15.0% |
| !!! | AATTTTGCTATAAACAATTT+TGG | + | chr5.3:26028875-26028894 | MS.gene58520:intron | 15.0% |
| !!! | ATCTAATTAATTTGCTATTA+GGG | + | chr5.3:26028481-26028500 | MS.gene58520:intron | 15.0% |
| !!! | ATTTCAATTGTAAACTTTTT+TGG | + | chr5.3:26029377-26029396 | MS.gene58520:intron | 15.0% |
| !!! | ATTTTGCTATAAACAATTTT+GGG | + | chr5.3:26028876-26028895 | MS.gene58520:intron | 15.0% |
| !!! | CTTATTTTACATATGAATTT+TGG | + | chr5.3:26029216-26029235 | MS.gene58520:intron | 15.0% |
| !!! | TTATGCAATTTTATTTCAAT+TGG | - | chr5.3:26029707-26029726 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTGTTTTGAAATT+CGG | + | chr5.3:26028425-26028444 | MS.gene58520:intron | 15.0% |
| !!! | TTTTTACTAATTTTGAAAAC+TGG | + | chr5.3:26028809-26028828 | MS.gene58520:intron | 15.0% |
| !! | AAAATCACGGATTTAAATAA+AGG | - | chr5.3:26028638-26028657 | None:intergenic | 20.0% |
| !! | AAATCAAGTACTAAAAATCA+CGG | - | chr5.3:26028651-26028670 | None:intergenic | 20.0% |
| !! | AACAAAAATATGATGTAAGA+AGG | + | chr5.3:26030238-26030257 | MS.gene58520:CDS | 20.0% |
| !! | ACAACAATTTAGTTATGAAA+TGG | + | chr5.3:26028064-26028083 | MS.gene58520:CDS | 20.0% |
| !! | ATGAATTATTCAAATCTTCT+AGG | - | chr5.3:26028044-26028063 | None:intergenic | 20.0% |
| !! | TATCTGTATTATGTATAATC+TGG | + | chr5.3:26029420-26029439 | MS.gene58520:intron | 20.0% |
| !! | TGAATTATTCAAATCTTCTA+GGG | - | chr5.3:26028043-26028062 | None:intergenic | 20.0% |
| !! | TTGATACTTAACACTTAATT+AGG | + | chr5.3:26029073-26029092 | MS.gene58520:intron | 20.0% |
| !!! | AAATTTTAAGAGAATTTCTG+AGG | + | chr5.3:26028149-26028168 | MS.gene58520:CDS | 20.0% |
| !!! | TAGTACTTGATTTGATTTTT+AGG | + | chr5.3:26028658-26028677 | MS.gene58520:intron | 20.0% |
| !!! | TTTTACATATGAATTTTGGA+TGG | + | chr5.3:26029220-26029239 | MS.gene58520:intron | 20.0% |
| ! | AAACTGTAAGTAGTTTCAAT+AGG | - | chr5.3:26028979-26028998 | None:intergenic | 25.0% |
| ! | AACAAAAATTAAGGAGAAAG+TGG | - | chr5.3:26028391-26028410 | None:intergenic | 25.0% |
| ! | TAGACATATCACAGTTAAAT+TGG | + | chr5.3:26030086-26030105 | MS.gene58520:CDS | 25.0% |
| !! | AGGAGTTTTCTTTTCTAAAT+TGG | + | chr5.3:26029806-26029825 | MS.gene58520:intron | 25.0% |
| !!! | ATACATAAGTTGGTTTAACA+AGG | + | chr5.3:26029786-26029805 | MS.gene58520:intron | 25.0% |
| !!! | CTTTTCTAAATTGGTTTTAC+AGG | + | chr5.3:26029815-26029834 | MS.gene58520:intron | 25.0% |
| !!! | TACATCATATTTTTGTTGTG+AGG | - | chr5.3:26030235-26030254 | None:intergenic | 25.0% |
| !!! | TACTAATTTTGAAAACTGGT+GGG | + | chr5.3:26028813-26028832 | MS.gene58520:intron | 25.0% |
| !!! | TTACTAATTTTGAAAACTGG+TGG | + | chr5.3:26028812-26028831 | MS.gene58520:intron | 25.0% |
| ACAGTGATATGTAACACAAA+TGG | - | chr5.3:26029143-26029162 | None:intergenic | 30.0% | |
| ACATCTCGAATACTAAAGAA+AGG | - | chr5.3:26029516-26029535 | None:intergenic | 30.0% | |
| ACCACAAAAATTACATCAGA+TGG | - | chr5.3:26029949-26029968 | None:intergenic | 30.0% | |
| ATATAAGAACCGACTAATCT+GGG | + | chr5.3:26028452-26028471 | MS.gene58520:intron | 30.0% | |
| CGATTACTACAAAACACTAA+AGG | + | chr5.3:26028002-26028021 | MS.gene58520:CDS | 30.0% | |
| GCAGAATTCAAAATTAGAGT+CGG | - | chr5.3:26029179-26029198 | None:intergenic | 30.0% | |
| GGTTGCATGTATAAGAAAAT+TGG | + | chr5.3:26028679-26028698 | MS.gene58520:intron | 30.0% | |
| TAACATATGATTGAGTGGTT+TGG | + | chr5.3:26029644-26029663 | MS.gene58520:intron | 30.0% | |
| TATATAAGAACCGACTAATC+TGG | + | chr5.3:26028451-26028470 | MS.gene58520:intron | 30.0% | |
| TATCCTGTGAATTTGGAAAA+TGG | + | chr5.3:26028228-26028247 | MS.gene58520:CDS | 30.0% | |
| TGAATTTGGAAAATGGTGAT+GGG | + | chr5.3:26028235-26028254 | MS.gene58520:CDS | 30.0% | |
| TTGAAGATACATATTCAACC+TGG | + | chr5.3:26029862-26029881 | MS.gene58520:CDS | 30.0% | |
| ! | ACCATCTGATGTAATTTTTG+TGG | + | chr5.3:26029945-26029964 | MS.gene58520:CDS | 30.0% |
| ! | TGAATTTTGGATGGTTTACT+TGG | + | chr5.3:26029229-26029248 | MS.gene58520:intron | 30.0% |
| ! | TTCCAGAAGTGATATCTTTT+CGG | - | chr5.3:26030025-26030044 | None:intergenic | 30.0% |
| !! | GGTATTGGTTAATCTTATCT+GGG | - | chr5.3:26028092-26028111 | None:intergenic | 30.0% |
| !! | GTTGCTATATTCTGCTATTT+TGG | + | chr5.3:26029345-26029364 | MS.gene58520:intron | 30.0% |
| !!! | AAGCTGTGTTTTGTTTACTT+TGG | + | chr5.3:26028937-26028956 | MS.gene58520:intron | 30.0% |
| !!! | CATTGCATGTTTGTTTTTGT+TGG | + | chr5.3:26028724-26028743 | MS.gene58520:intron | 30.0% |
| !!! | GCTATTAGGGTTTTATTTAG+TGG | + | chr5.3:26028494-26028513 | MS.gene58520:intron | 30.0% |
| !!! | GTTTGTTTTTGTTGGCTATT+AGG | + | chr5.3:26028732-26028751 | MS.gene58520:intron | 30.0% |
| !!! | TGCTGTTATTATGCTACTTT+TGG | + | chr5.3:26029323-26029342 | MS.gene58520:intron | 30.0% |
| AAAGGAAGGTGAAAGTTGTA+AGG | + | chr5.3:26028340-26028359 | MS.gene58520:CDS | 35.0% | |
| AAATGGTGCGCATTAGTATT+AGG | - | chr5.3:26029126-26029145 | None:intergenic | 35.0% | |
| ACCACATCCTATATTCAAGA+GGG | + | chr5.3:26029978-26029997 | MS.gene58520:CDS | 35.0% | |
| AGATACATATTCAACCTGGT+TGG | + | chr5.3:26029866-26029885 | MS.gene58520:CDS | 35.0% | |
| AGATTAACCAATACCCTTCA+AGG | + | chr5.3:26028097-26028116 | MS.gene58520:CDS | 35.0% | |
| ATGTGACAAAATGACAGCAT+AGG | - | chr5.3:26029279-26029298 | None:intergenic | 35.0% | |
| ATTGGATGATATTGTGACAC+CGG | + | chr5.3:26030104-26030123 | MS.gene58520:CDS | 35.0% | |
| CGCATTAGTATTAGGAGTTA+GGG | - | chr5.3:26029118-26029137 | None:intergenic | 35.0% | |
| CTGTGTAACATATGATTGAG+TGG | + | chr5.3:26029639-26029658 | MS.gene58520:intron | 35.0% | |
| CTTTGCTTGGATACATAAGT+TGG | + | chr5.3:26029776-26029795 | MS.gene58520:intron | 35.0% | |
| GCATTAGTATTAGGAGTTAG+GGG | - | chr5.3:26029117-26029136 | None:intergenic | 35.0% | |
| GGCTTAGTGTAACAGTAAAT+AGG | - | chr5.3:26029686-26029705 | None:intergenic | 35.0% | |
| GTGAATTTGGAAAATGGTGA+TGG | + | chr5.3:26028234-26028253 | MS.gene58520:CDS | 35.0% | |
| TATAAGAACCGACTAATCTG+GGG | + | chr5.3:26028453-26028472 | MS.gene58520:intron | 35.0% | |
| TCGAATACTAAAGAAAGGAG+TGG | - | chr5.3:26029511-26029530 | None:intergenic | 35.0% | |
| TGGTCAATATCCTGTGAATT+TGG | + | chr5.3:26028221-26028240 | MS.gene58520:CDS | 35.0% | |
| TGTATCCAAGCAAAGTGAAA+AGG | - | chr5.3:26029771-26029790 | None:intergenic | 35.0% | |
| TGTGATATTGCTAAGAATCG+CGG | + | chr5.3:26028530-26028549 | MS.gene58520:intron | 35.0% | |
| TTATAAGGGTTGCAAAAGGA+AGG | + | chr5.3:26028326-26028345 | MS.gene58520:CDS | 35.0% | |
| TTCAAGGAAACAAGAGTTTG+AGG | + | chr5.3:26028125-26028144 | MS.gene58520:CDS | 35.0% | |
| TTGAATGTAACCACATGTGT+TGG | + | chr5.3:26029570-26029589 | MS.gene58520:intron | 35.0% | |
| ! | AGCTTTATAAGGGTTGCAAA+AGG | + | chr5.3:26028322-26028341 | MS.gene58520:CDS | 35.0% |
| ! | CAAACTCTTGTTTCCTTGAA+GGG | - | chr5.3:26028125-26028144 | None:intergenic | 35.0% |
| ! | TCAAACTCTTGTTTCCTTGA+AGG | - | chr5.3:26028126-26028145 | None:intergenic | 35.0% |
| ! | TCACCATTTTCCAAATTCAC+AGG | - | chr5.3:26028234-26028253 | None:intergenic | 35.0% |
| !! | AAATGGTGATGGGAGTAATA+TGG | + | chr5.3:26028245-26028264 | MS.gene58520:CDS | 35.0% |
| !! | AGTAATATGGAGGTTGATGA+AGG | + | chr5.3:26028258-26028277 | MS.gene58520:CDS | 35.0% |
| !! | GGGTATTGGTTAATCTTATC+TGG | - | chr5.3:26028093-26028112 | None:intergenic | 35.0% |
| !! | TTTTGTTGTGAGGTCAAACT+TGG | - | chr5.3:26030225-26030244 | None:intergenic | 35.0% |
| !!! | GTACAAAAGTCACTTTTCCT+GGG | + | chr5.3:26029896-26029915 | MS.gene58520:CDS | 35.0% |
| AACCACAATTGAAGCCTCAT+CGG | - | chr5.3:26028566-26028585 | None:intergenic | 40.0% | |
| AACCCTTATAAAGCTCCTCA+AGG | - | chr5.3:26028317-26028336 | None:intergenic | 40.0% | |
| AAGCAAAGTGAAAAGGAAGG+GGG | - | chr5.3:26029764-26029783 | None:intergenic | 40.0% | |
| AGGAATGTTCCTGATGAGTT+TGG | + | chr5.3:26028360-26028379 | MS.gene58520:CDS | 40.0% | |
| ATAAGAACCGACTAATCTGG+GGG | + | chr5.3:26028454-26028473 | MS.gene58520:intron | 40.0% | |
| ATTCAACCTGGTTGGAAGAA+GGG | + | chr5.3:26029874-26029893 | MS.gene58520:CDS | 40.0% | |
| CAAGCAAAGTGAAAAGGAAG+GGG | - | chr5.3:26029765-26029784 | None:intergenic | 40.0% | |
| CATCCTATATTCAAGAGGGA+CGG | + | chr5.3:26029982-26030001 | MS.gene58520:CDS | 40.0% | |
| CCAAGCAAAGTGAAAAGGAA+GGG | - | chr5.3:26029766-26029785 | None:intergenic | 40.0% | |
| CTAAGATTTCCTCTCTTGCT+TGG | - | chr5.3:26030177-26030196 | None:intergenic | 40.0% | |
| GACCACATCCTATATTCAAG+AGG | + | chr5.3:26029977-26029996 | MS.gene58520:CDS | 40.0% | |
| GACCGAAAAGATATCACTTC+TGG | + | chr5.3:26030020-26030039 | MS.gene58520:CDS | 40.0% | |
| GCGATTCTTAGCAATATCAC+AGG | - | chr5.3:26028531-26028550 | None:intergenic | 40.0% | |
| GCGCATTAGTATTAGGAGTT+AGG | - | chr5.3:26029119-26029138 | None:intergenic | 40.0% | |
| GGAATGTTCCTGATGAGTTT+GGG | + | chr5.3:26028361-26028380 | MS.gene58520:CDS | 40.0% | |
| GTTTCTTACACCAACACATG+TGG | - | chr5.3:26029583-26029602 | None:intergenic | 40.0% | |
| TATTCAACCTGGTTGGAAGA+AGG | + | chr5.3:26029873-26029892 | MS.gene58520:CDS | 40.0% | |
| TCATAGATCTGACGCTTCTT+AGG | - | chr5.3:26028195-26028214 | None:intergenic | 40.0% | |
| TCCAAGCAAAGTGAAAAGGA+AGG | - | chr5.3:26029767-26029786 | None:intergenic | 40.0% | |
| TCCCTCTTGAATATAGGATG+TGG | - | chr5.3:26029982-26030001 | None:intergenic | 40.0% | |
| TGGAGTTGTTGAGAGTGATT+TGG | + | chr5.3:26028284-26028303 | MS.gene58520:CDS | 40.0% | |
| TGTGATATGTCTACCATCCA+AGG | - | chr5.3:26030079-26030098 | None:intergenic | 40.0% | |
| TTGGATGATATTGTGACACC+GGG | + | chr5.3:26030105-26030124 | MS.gene58520:CDS | 40.0% | |
| TTTATTTAGTGGTTGTGCCG+CGG | + | chr5.3:26028505-26028524 | MS.gene58520:intron | 40.0% | |
| TTTCCGTCCCTCTTGAATAT+AGG | - | chr5.3:26029988-26030007 | None:intergenic | 40.0% | |
| ! | ACGTGTTTAGTCTGAAGTGT+CGG | + | chr5.3:26029607-26029626 | MS.gene58520:intron | 40.0% |
| ! | AGCCTTGAGGAGCTTTATAA+GGG | + | chr5.3:26028312-26028331 | MS.gene58520:CDS | 40.0% |
| ! | TAGCCTTGAGGAGCTTTATA+AGG | + | chr5.3:26028311-26028330 | MS.gene58520:CDS | 40.0% |
| ! | TGAGGCTTCAATTGTGGTTT+TGG | + | chr5.3:26028567-26028586 | MS.gene58520:intron | 40.0% |
| ! | TTGCTTGGATCCTTTGAAAG+TGG | - | chr5.3:26030162-26030181 | None:intergenic | 40.0% |
| !! | ATTTTGAAAACTGGTGGGTG+TGG | + | chr5.3:26028818-26028837 | MS.gene58520:intron | 40.0% |
| !! | TGAAGGTATGCCACTTTCAA+AGG | + | chr5.3:26030149-26030168 | MS.gene58520:CDS | 40.0% |
| !! | TGATTTGGTATGTAGCCTTG+AGG | + | chr5.3:26028299-26028318 | MS.gene58520:CDS | 40.0% |
| !!! | AAAGTCACTTTTCCTGGGAA+AGG | + | chr5.3:26029901-26029920 | MS.gene58520:CDS | 40.0% |
| !!! | GGTACAAAAGTCACTTTTCC+TGG | + | chr5.3:26029895-26029914 | MS.gene58520:CDS | 40.0% |
| AAAGAAAGGAGTGGCTAGAC+AGG | - | chr5.3:26029502-26029521 | None:intergenic | 45.0% | |
| CGTCAGATCTATGATCGCAA+TGG | + | chr5.3:26028201-26028220 | MS.gene58520:CDS | 45.0% | |
| CTCAACATCACAACCTTGGA+TGG | + | chr5.3:26030063-26030082 | MS.gene58520:CDS | 45.0% | |
| GACTCTCAACATCACAACCT+TGG | + | chr5.3:26030059-26030078 | MS.gene58520:CDS | 45.0% | |
| GGAAACTATCTTCCAGGATC+TGG | + | chr5.3:26029922-26029941 | MS.gene58520:CDS | 45.0% | |
| GGAAGATAGTTTCCTTTCCC+AGG | - | chr5.3:26029916-26029935 | None:intergenic | 45.0% | |
| GGGAAAGGAAACTATCTTCC+AGG | + | chr5.3:26029916-26029935 | MS.gene58520:CDS | 45.0% | |
| GGGTGTGGAAAAGCTTATAC+AGG | + | chr5.3:26028833-26028852 | MS.gene58520:intron | 45.0% | |
| TCAAAGGATCCAAGCAAGAG+AGG | + | chr5.3:26030165-26030184 | MS.gene58520:CDS | 45.0% | |
| TCCTTGAAGGGTTCCTTGAA+GGG | - | chr5.3:26028113-26028132 | None:intergenic | 45.0% | |
| TGACAGCATAGGCAACATCA+TGG | - | chr5.3:26029268-26029287 | None:intergenic | 45.0% | |
| TGTGACACCGGGATATGAAA+AGG | + | chr5.3:26030116-26030135 | MS.gene58520:CDS | 45.0% | |
| TGTTGTGAGGTCAAACTTGG+TGG | - | chr5.3:26030222-26030241 | None:intergenic | 45.0% | |
| TTCCTTGAAGGGTTCCTTGA+AGG | - | chr5.3:26028114-26028133 | None:intergenic | 45.0% | |
| TTTGTACCCTTCTTCCAACC+AGG | - | chr5.3:26029883-26029902 | None:intergenic | 45.0% | |
| ! | AAGGGTTCCTTGAAGGGTAT+TGG | - | chr5.3:26028107-26028126 | None:intergenic | 45.0% |
| ! | CCCTTCCTTTTCACTTTGCT+TGG | + | chr5.3:26029763-26029782 | MS.gene58520:intron | 45.0% |
| ! | GTGGATTACCCAAACTCATC+AGG | - | chr5.3:26028372-26028391 | None:intergenic | 45.0% |
| ! | TCACTTCTGGAAGCTCTTGT+TGG | + | chr5.3:26030033-26030052 | MS.gene58520:CDS | 45.0% |
| !! | ATGGAGGTTGATGAAGGTGT+TGG | + | chr5.3:26028264-26028283 | MS.gene58520:CDS | 45.0% |
| !! | TGGTGATGGGAGTAATATGG+AGG | + | chr5.3:26028248-26028267 | MS.gene58520:CDS | 45.0% |
| ACAGGCAACCAAAGGATGAG+GGG | - | chr5.3:26029484-26029503 | None:intergenic | 50.0% | |
| ACATCAGATGGTCCAGATCC+TGG | - | chr5.3:26029937-26029956 | None:intergenic | 50.0% | |
| ACCCTTCAAGGAACCCTTCA+AGG | + | chr5.3:26028109-26028128 | MS.gene58520:CDS | 50.0% | |
| AGACAGGCAACCAAAGGATG+AGG | - | chr5.3:26029486-26029505 | None:intergenic | 50.0% | |
| AGCCGATGAGGCTTCAATTG+TGG | + | chr5.3:26028561-26028580 | MS.gene58520:intron | 50.0% | |
| CTTAGCAATATCACAGGCCG+CGG | - | chr5.3:26028525-26028544 | None:intergenic | 50.0% | |
| GAAAAGGTCGTCGCTGATGA+AGG | + | chr5.3:26030132-26030151 | MS.gene58520:CDS | 50.0% | |
| GACAGGCAACCAAAGGATGA+GGG | - | chr5.3:26029485-26029504 | None:intergenic | 50.0% | |
| ! | GATTGGTCCCCCAGATTAGT+CGG | - | chr5.3:26028464-26028483 | None:intergenic | 50.0% |
| ! | GCGACGACCTTTTCATATCC+CGG | - | chr5.3:26030126-26030145 | None:intergenic | 50.0% |
| AGGGGCAGGCAGGTATAAGA+AGG | - | chr5.3:26029466-26029485 | None:intergenic | 55.0% | |
| GCGGTCAAATGAAGCCGATG+AGG | + | chr5.3:26028549-26028568 | MS.gene58520:intron | 55.0% | |
| GTGGCTAGACAGGCAACCAA+AGG | - | chr5.3:26029492-26029511 | None:intergenic | 55.0% | |
| GCAACCAAAGGATGAGGGGC+AGG | - | chr5.3:26029480-26029499 | None:intergenic | 60.0% | |
| CCAAAGGATGAGGGGCAGGC+AGG | - | chr5.3:26029476-26029495 | None:intergenic | 65.0% | |
| CCTGCCTGCCCCTCATCCTT+TGG | + | chr5.3:26029473-26029492 | MS.gene58520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.3 | gene | 26027991 | 26030287 | 26027991 | ID=MS.gene58520 |
| chr5.3 | mRNA | 26027991 | 26030287 | 26027991 | ID=MS.gene58520.t1;Parent=MS.gene58520 |
| chr5.3 | exon | 26027991 | 26028382 | 26027991 | ID=MS.gene58520.t1.exon1;Parent=MS.gene58520.t1 |
| chr5.3 | CDS | 26027991 | 26028382 | 26027991 | ID=cds.MS.gene58520.t1;Parent=MS.gene58520.t1 |
| chr5.3 | exon | 26029837 | 26030287 | 26029837 | ID=MS.gene58520.t1.exon2;Parent=MS.gene58520.t1 |
| chr5.3 | CDS | 26029837 | 26030287 | 26029837 | ID=cds.MS.gene58520.t1;Parent=MS.gene58520.t1 |
| Gene Sequence |
| Protein sequence |
