Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58684.t1 | XP_003594883.2 | 94.3 | 424 | 24 | 0 | 2 | 425 | 68 | 491 | 1.70E-226 | 795 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58684.t1 | O49432 | 54.4 | 425 | 170 | 6 | 6 | 425 | 74 | 479 | 3.4e-119 | 429.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58684.t1 | G7INF1 | 94.3 | 424 | 24 | 0 | 2 | 425 | 65 | 488 | 1.2e-226 | 795.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene055133 | MS.gene58684 | 0.820366 | 7.12E-53 | -1.69E-46 |
| MS.gene060320 | MS.gene58684 | 0.932113 | 1.39E-94 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58684.t1 | MTR_2g035790 | 94.340 | 424 | 24 | 0 | 2 | 425 | 65 | 488 | 0.0 | 787 |
| MS.gene58684.t1 | MTR_4g094732 | 71.897 | 427 | 115 | 3 | 2 | 425 | 56 | 480 | 0.0 | 613 |
| MS.gene58684.t1 | MTR_2g035760 | 52.542 | 413 | 178 | 7 | 6 | 413 | 82 | 481 | 1.90e-140 | 410 |
| MS.gene58684.t1 | MTR_6g015785 | 52.214 | 429 | 181 | 8 | 1 | 425 | 82 | 490 | 2.78e-134 | 395 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene58684.t1 | AT4G20040 | 64.085 | 426 | 146 | 5 | 2 | 425 | 63 | 483 | 0.0 | 550 |
| MS.gene58684.t1 | AT4G20050 | 54.353 | 425 | 170 | 6 | 6 | 425 | 74 | 479 | 3.30e-150 | 435 |
| MS.gene58684.t1 | AT4G20050 | 54.353 | 425 | 170 | 6 | 6 | 425 | 74 | 479 | 3.30e-150 | 435 |
| MS.gene58684.t1 | AT4G20050 | 54.353 | 425 | 170 | 6 | 6 | 425 | 74 | 479 | 3.30e-150 | 435 |
| MS.gene58684.t1 | AT4G20050 | 54.353 | 425 | 170 | 6 | 6 | 425 | 74 | 479 | 3.30e-150 | 435 |
| MS.gene58684.t1 | AT4G20050 | 54.353 | 425 | 170 | 6 | 6 | 425 | 99 | 504 | 6.53e-150 | 435 |
| MS.gene58684.t1 | AT4G20050 | 53.750 | 400 | 161 | 6 | 31 | 425 | 1 | 381 | 6.29e-138 | 400 |
| MS.gene58684.t1 | AT4G20050 | 53.750 | 400 | 161 | 6 | 31 | 425 | 1 | 381 | 6.29e-138 | 400 |
Find 85 sgRNAs with CRISPR-Local
Find 187 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GCATTTGATATTGATAATTT+AGG | 0.107857 | 2.3:-53338081 | MS.gene58684:CDS |
| ACAATTGGAACATTATTATT+AGG | 0.129299 | 2.3:+53335461 | None:intergenic |
| TCAATTAAAGGGAAAGTTTA+TGG | 0.147921 | 2.3:-53335518 | MS.gene58684:CDS |
| GGATCTGCACCATACTTAAT+TGG | 0.153680 | 2.3:+53338153 | None:intergenic |
| CATTTGATATTGATAATTTA+GGG | 0.251344 | 2.3:-53338080 | MS.gene58684:CDS |
| GTTCCAATTGTGAAATTAGA+TGG | 0.269638 | 2.3:-53335449 | MS.gene58684:CDS |
| CATCAATGACCAAAGGTAAA+TGG | 0.278889 | 2.3:-53336190 | MS.gene58684:intron |
| CAATTGGAACATTATTATTA+GGG | 0.285274 | 2.3:+53335462 | None:intergenic |
| TATAACAAAGCAACAGGTTT+TGG | 0.286379 | 2.3:-53335692 | MS.gene58684:CDS |
| ATTGTTAACAATATGTTTAG+TGG | 0.301676 | 2.3:-53335488 | MS.gene58684:CDS |
| TGAAAATGACTAATCCTATT+AGG | 0.302520 | 2.3:+53335287 | None:intergenic |
| CAGCCATAGGAATTGTTGTT+AGG | 0.306110 | 2.3:-53335748 | MS.gene58684:CDS |
| TGGATGGTAATGGCACAAAA+TGG | 0.367127 | 2.3:-53335340 | MS.gene58684:CDS |
| AAATGTTTCAGAAGCTCTTA+AGG | 0.373297 | 2.3:+53336162 | None:intergenic |
| TACTTGATATGAAGGTTTCA+TGG | 0.388165 | 2.3:+53335888 | None:intergenic |
| CCTCCAAGGTCTCTAATTCC+TGG | 0.397675 | 2.3:+53338045 | None:intergenic |
| CATTGTTATAACAAAGCAAC+AGG | 0.404226 | 2.3:-53335698 | MS.gene58684:CDS |
| TAATTCCTTCGGTGGTGAAA+TGG | 0.411730 | 2.3:+53335924 | None:intergenic |
| ACTTTGAACTTTAATTCCTT+CGG | 0.420815 | 2.3:+53335913 | None:intergenic |
| AGCTTCTACAGCTTTCATAA+TGG | 0.424025 | 2.3:+53338104 | None:intergenic |
| TTCGTAACATGAACTTGAAC+AGG | 0.426663 | 2.3:+53335578 | None:intergenic |
| AAGTATGGTGCAGATCCAAC+TGG | 0.430294 | 2.3:-53338147 | MS.gene58684:CDS |
| TTGTTCAAGTAATCTGTTGT+TGG | 0.430783 | 2.3:+53336069 | None:intergenic |
| AATTCATTGTTCAACAAAGA+AGG | 0.431005 | 2.3:+53335154 | None:intergenic |
| ACTGAATGTGCAACAAACTT+TGG | 0.434126 | 2.3:+53335239 | None:intergenic |
| AAGAAAACTACTTGATATGA+AGG | 0.434177 | 2.3:+53335880 | None:intergenic |
| ATATTCATTTCATGCATTAG+AGG | 0.439787 | 2.3:-53335264 | MS.gene58684:CDS |
| GATCTGCACCATACTTAATT+GGG | 0.441924 | 2.3:+53338154 | None:intergenic |
| ATCACATTTCCTTCATCGGC+TGG | 0.454793 | 2.3:-53337976 | MS.gene58684:CDS |
| AGATTACTTGAACAAACAAT+AGG | 0.463517 | 2.3:-53336061 | MS.gene58684:CDS |
| TCCCATCACATTTCCTTCAT+CGG | 0.471050 | 2.3:-53337980 | MS.gene58684:CDS |
| AGCCATAGGAATTGTTGTTA+GGG | 0.472547 | 2.3:-53335747 | MS.gene58684:CDS |
| GAAAGTGAGAAACCAGTTCA+TGG | 0.473042 | 2.3:-53335185 | MS.gene58684:CDS |
| TTCCAATTGTGAAATTAGAT+GGG | 0.473930 | 2.3:-53335448 | MS.gene58684:CDS |
| AAGGAAACAACCCCATGAAC+TGG | 0.475950 | 2.3:+53335173 | None:intergenic |
| TTACCAGGAATTAGAGACCT+TGG | 0.494991 | 2.3:-53338048 | MS.gene58684:CDS |
| TCCCCTAACAACAATTCCTA+TGG | 0.501817 | 2.3:+53335745 | None:intergenic |
| TATTCATTTCATGCATTAGA+GGG | 0.507592 | 2.3:-53335263 | MS.gene58684:CDS |
| AAGAATTGATAATTGTTACA+TGG | 0.510868 | 2.3:-53335627 | MS.gene58684:CDS |
| GTCAAATAATGTTGTAGTTG+TGG | 0.512201 | 2.3:-53335207 | MS.gene58684:CDS |
| TTAGGGCTTGAATTATTACC+AGG | 0.514044 | 2.3:-53338063 | MS.gene58684:CDS |
| TTCCTCCATTTCACCACCGA+AGG | 0.521417 | 2.3:-53335929 | MS.gene58684:CDS |
| GTGGTGTACCCAATTAAGTA+TGG | 0.526549 | 2.3:-53338162 | MS.gene58684:CDS |
| ACAAGATTGCCAGCCGATGA+AGG | 0.526613 | 2.3:+53337967 | None:intergenic |
| CTTGGACAACACTCAACAGT+CGG | 0.527472 | 2.3:-53335860 | MS.gene58684:CDS |
| GTTCAAGTTCATGTTACGAA+TGG | 0.528355 | 2.3:-53335575 | MS.gene58684:CDS |
| GATTGGAAAATGAAGAAGAG+TGG | 0.536042 | 2.3:-53338189 | None:intergenic |
| GATTCAAGTTACCGAGGTGG+AGG | 0.539152 | 2.3:-53335998 | MS.gene58684:CDS |
| TTGAACTTTAATTCCTTCGG+TGG | 0.542054 | 2.3:+53335916 | None:intergenic |
| ATTGATATGAACAATGTGAT+TGG | 0.543536 | 2.3:-53335398 | MS.gene58684:CDS |
| TGGTAATGGCACAAAATGGG+TGG | 0.549729 | 2.3:-53335336 | MS.gene58684:CDS |
| TCAACAAGGTGTCTATCAGT+TGG | 0.550636 | 2.3:+53336139 | None:intergenic |
| GGATGGTAATGGCACAAAAT+GGG | 0.551911 | 2.3:-53335339 | MS.gene58684:CDS |
| GGATTATAATTCTATAGTCA+TGG | 0.563335 | 2.3:-53335606 | MS.gene58684:CDS |
| AAAGTGAGAAACCAGTTCAT+GGG | 0.566325 | 2.3:-53335184 | MS.gene58684:CDS |
| TTCATCGGCTGGCAATCTTG+TGG | 0.566505 | 2.3:-53337965 | MS.gene58684:intron |
| TCAACAGTCGGCGGAGACAA+AGG | 0.569193 | 2.3:-53335848 | MS.gene58684:CDS |
| AATGAAGAAGAGTGGAAGAG+TGG | 0.571785 | 2.3:-53338181 | MS.gene58684:CDS |
| TTCCTTCGGTGGTGAAATGG+AGG | 0.577526 | 2.3:+53335927 | None:intergenic |
| GCCGATGAAGGAAATGTGAT+GGG | 0.577733 | 2.3:+53337979 | None:intergenic |
| CCAGGAATTAGAGACCTTGG+AGG | 0.587401 | 2.3:-53338045 | MS.gene58684:CDS |
| GGACAAGCTAACATGATCAC+AGG | 0.590351 | 2.3:-53335725 | MS.gene58684:CDS |
| AGTATGGTGCAGATCCAACT+GGG | 0.590855 | 2.3:-53338146 | MS.gene58684:CDS |
| ATTTAGTGACATTGATCAAG+TGG | 0.593403 | 2.3:-53335423 | MS.gene58684:CDS |
| TCCAATTGTGAAATTAGATG+GGG | 0.603106 | 2.3:-53335447 | MS.gene58684:CDS |
| CTCGGTAACTTGAATCGAAG+AGG | 0.611266 | 2.3:+53336005 | None:intergenic |
| TTGATGCATTTAACTCAACA+AGG | 0.612978 | 2.3:+53336125 | None:intergenic |
| AGCCGATGAAGGAAATGTGA+TGG | 0.612995 | 2.3:+53337978 | None:intergenic |
| AAGTTGAATGTGGATGGTAA+TGG | 0.619073 | 2.3:-53335350 | MS.gene58684:CDS |
| AATCAATGATAACACCTCCA+AGG | 0.627415 | 2.3:+53338031 | None:intergenic |
| AACCGTTGGGAAGTTGAATG+TGG | 0.628722 | 2.3:-53335360 | MS.gene58684:CDS |
| TGCTGAGAAAATTGCAACAT+CGG | 0.630023 | 2.3:+53335769 | None:intergenic |
| TTCGATTCAAGTTACCGAGG+TGG | 0.636613 | 2.3:-53336001 | MS.gene58684:CDS |
| GCCATAGGAATTGTTGTTAG+GGG | 0.637301 | 2.3:-53335746 | MS.gene58684:CDS |
| CCAATTGTGAAATTAGATGG+GGG | 0.638303 | 2.3:-53335446 | MS.gene58684:CDS |
| GGTAATGGCACAAAATGGGT+GGG | 0.641219 | 2.3:-53335335 | MS.gene58684:CDS |
| ATCCACATTCAACTTCCCAA+CGG | 0.649744 | 2.3:+53335358 | None:intergenic |
| AAGTGAGAAACCAGTTCATG+GGG | 0.654495 | 2.3:-53335183 | MS.gene58684:CDS |
| GTTGGGAAGTTGAATGTGGA+TGG | 0.656072 | 2.3:-53335356 | MS.gene58684:CDS |
| GAAGGAATTAAAGTTCAAAG+TGG | 0.662811 | 2.3:-53335911 | MS.gene58684:CDS |
| CAATGACCAAAGGTAAATGG+AGG | 0.667241 | 2.3:-53336187 | MS.gene58684:intron |
| CTCTTCGATTCAAGTTACCG+AGG | 0.668555 | 2.3:-53336004 | MS.gene58684:CDS |
| GGACAACACTCAACAGTCGG+CGG | 0.701448 | 2.3:-53335857 | MS.gene58684:CDS |
| CGATGAATATTCCTCCACCT+CGG | 0.718566 | 2.3:+53335987 | None:intergenic |
| GTATGGTGCAGATCCAACTG+GGG | 0.760947 | 2.3:-53338145 | MS.gene58684:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AGAGAAAAATATTTATTTAT+AGG | + | chr2.3:53335985-53336004 | None:intergenic | 10.0% |
| !! | CTAATTTATATAACAAATTA+AGG | + | chr2.3:53335497-53335516 | None:intergenic | 10.0% |
| !! | TCAAAATAATAAATTTGTAT+TGG | - | chr2.3:53336608-53336627 | MS.gene58684:intron | 10.0% |
| !!! | ATGAGATTTTAAAAAAATTA+TGG | - | chr2.3:53336281-53336300 | MS.gene58684:intron | 10.0% |
| !!! | GAATTTTTTTTTTTTGAATA+AGG | - | chr2.3:53336473-53336492 | MS.gene58684:intron | 10.0% |
| !!! | TTTTGATAATATTTATTAAG+AGG | - | chr2.3:53335887-53335906 | MS.gene58684:CDS | 10.0% |
| !! | AAATAAAACATTATTTGGAA+TGG | + | chr2.3:53335853-53335872 | None:intergenic | 15.0% |
| !! | AAATCATAACATAACAATAT+TGG | - | chr2.3:53337022-53337041 | MS.gene58684:intron | 15.0% |
| !! | AATAATATGTAAAAGTTAAG+TGG | + | chr2.3:53337106-53337125 | None:intergenic | 15.0% |
| !! | TGTGAATTTAATGATAAATA+AGG | + | chr2.3:53336825-53336844 | None:intergenic | 15.0% |
| !!! | AATAAAACATTATTTGGAAT+GGG | + | chr2.3:53335852-53335871 | None:intergenic | 15.0% |
| !!! | ATTGTTTTGAAATCAATTAA+AGG | - | chr2.3:53337807-53337826 | MS.gene58684:intron | 15.0% |
| !!! | CATTTGATATTGATAATTTA+GGG | - | chr2.3:53335257-53335276 | MS.gene58684:CDS | 15.0% |
| !!! | TCAAATTTAATTTGTAAACA+TGG | - | chr2.3:53336397-53336416 | MS.gene58684:intron | 15.0% |
| !!! | TCTCTTTTGATTTTTTTTAT+TGG | - | chr2.3:53336000-53336019 | MS.gene58684:CDS | 15.0% |
| !!! | TTGTTTTGAAATCAATTAAA+GGG | - | chr2.3:53337808-53337827 | MS.gene58684:intron | 15.0% |
| !! | ACAATTGGAACATTATTATT+AGG | + | chr2.3:53337879-53337898 | None:intergenic | 20.0% |
| !! | ACATCTACTTTAATAGTTTA+TGG | - | chr2.3:53336863-53336882 | MS.gene58684:intron | 20.0% |
| !! | ATTGTTAACAATATGTTTAG+TGG | - | chr2.3:53337849-53337868 | MS.gene58684:intron | 20.0% |
| !! | CAATTGGAACATTATTATTA+GGG | + | chr2.3:53337878-53337897 | None:intergenic | 20.0% |
| !! | TCGATTCAATAGAATAAAAA+AGG | - | chr2.3:53336239-53336258 | MS.gene58684:intron | 20.0% |
| !!! | AAGAATTGATAATTGTTACA+TGG | - | chr2.3:53337710-53337729 | MS.gene58684:intron | 20.0% |
| !!! | AGTTGCAAAATTTTATTGAA+AGG | + | chr2.3:53336682-53336701 | None:intergenic | 20.0% |
| !!! | ATAAAACATTATTTGGAATG+GGG | + | chr2.3:53335851-53335870 | None:intergenic | 20.0% |
| !!! | GCATTTGATATTGATAATTT+AGG | - | chr2.3:53335256-53335275 | MS.gene58684:CDS | 20.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | - | chr2.3:53336969-53336988 | MS.gene58684:intron | 25.0% |
| ! | AAACATCAAAAGAAAAGGAA+TGG | + | chr2.3:53336988-53336969 | None:intergenic | 25.0% |
| ! | AAGAAAACTACTTGATATGA+AGG | + | chr2.3:53337460-53337479 | None:intergenic | 25.0% |
| ! | AAGAGTTAAAACAAAGAAGA+GGG | - | chr2.3:53335701-53335720 | MS.gene58684:CDS | 25.0% |
| ! | ACTTTGAACTTTAATTCCTT+CGG | + | chr2.3:53337427-53337446 | None:intergenic | 25.0% |
| ! | AGATTACTTGAACAAACAAT+AGG | - | chr2.3:53337276-53337295 | MS.gene58684:intron | 25.0% |
| ! | AGCTAAAACATCAAAAGAAA+AGG | + | chr2.3:53336738-53336757 | None:intergenic | 25.0% |
| ! | ATATTCATTTCATGCATTAG+AGG | - | chr2.3:53338073-53338092 | MS.gene58684:CDS | 25.0% |
| ! | ATTGATATGAACAATGTGAT+TGG | - | chr2.3:53337939-53337958 | MS.gene58684:intron | 25.0% |
| ! | CATAACATAACAATATTGGA+GGG | - | chr2.3:53337026-53337045 | MS.gene58684:intron | 25.0% |
| ! | GGATTATAATTCTATAGTCA+TGG | - | chr2.3:53337731-53337750 | MS.gene58684:intron | 25.0% |
| ! | TAAGAGTTAAAACAAAGAAG+AGG | - | chr2.3:53335700-53335719 | MS.gene58684:CDS | 25.0% |
| ! | TATTCATTTCATGCATTAGA+GGG | - | chr2.3:53338074-53338093 | MS.gene58684:CDS | 25.0% |
| ! | TCAATTAAAGGGAAAGTTTA+TGG | - | chr2.3:53337819-53337838 | MS.gene58684:intron | 25.0% |
| ! | TCATAACATAACAATATTGG+AGG | - | chr2.3:53337025-53337044 | MS.gene58684:intron | 25.0% |
| ! | TGAAAATGACTAATCCTATT+AGG | + | chr2.3:53338053-53338072 | None:intergenic | 25.0% |
| ! | TTCCAATTGTGAAATTAGAT+GGG | - | chr2.3:53337889-53337908 | MS.gene58684:intron | 25.0% |
| ! | TTCTATGATGTACATATGTT+AGG | - | chr2.3:53336581-53336600 | MS.gene58684:intron | 25.0% |
| !! | CACTAAAACATCAAAAGTTT+TGG | - | chr2.3:53336928-53336947 | MS.gene58684:intron | 25.0% |
| !! | TATTCAATGCAAGAACATTT+TGG | + | chr2.3:53336028-53336047 | None:intergenic | 25.0% |
| !! | TTCATATCAAGTAGTTTTCT+TGG | - | chr2.3:53337459-53337478 | MS.gene58684:intron | 25.0% |
| !! | TTTTCTTGAATGATTCTTGA+AGG | + | chr2.3:53335823-53335842 | None:intergenic | 25.0% |
| !!! | ATCAGTAGATATTTTTGAAG+AGG | - | chr2.3:53336451-53336470 | MS.gene58684:intron | 25.0% |
| !!! | ATGTTTTGGTATTTCCTAAT+AGG | - | chr2.3:53338036-53338055 | MS.gene58684:CDS | 25.0% |
| !!! | CTCTAAAACATCAAAAGAAA+AGG | - | chr2.3:53336964-53336983 | MS.gene58684:intron | 25.0% |
| !!! | TTAACTCTTAACTTGTTTTC+TGG | + | chr2.3:53335690-53335709 | None:intergenic | 25.0% |
| !!! | TTACGAATGGTTTTTTCTTA+GGG | - | chr2.3:53337775-53337794 | MS.gene58684:intron | 25.0% |
| AAATGTTTCAGAAGCTCTTA+AGG | + | chr2.3:53337178-53337197 | None:intergenic | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+GGG | - | chr2.3:53336973-53336992 | MS.gene58684:intron | 30.0% | |
| ATCAAAAGAAAAGGAATGGA+TGG | + | chr2.3:53336992-53336973 | None:intergenic | 30.0% | |
| ATCAATCAAAGTAGTAAAGG+AGG | + | chr2.3:53335433-53335452 | None:intergenic | 30.0% | |
| ATTAAAGTAGATGTGACCTT+TGG | + | chr2.3:53336857-53336876 | None:intergenic | 30.0% | |
| ATTCACATGTGATAAACCAA+AGG | - | chr2.3:53336838-53336857 | MS.gene58684:intron | 30.0% | |
| ATTTAGTGACATTGATCAAG+TGG | - | chr2.3:53337914-53337933 | MS.gene58684:intron | 30.0% | |
| CATTGTTATAACAAAGCAAC+AGG | - | chr2.3:53337639-53337658 | MS.gene58684:intron | 30.0% | |
| GAAGGAATTAAAGTTCAAAG+TGG | - | chr2.3:53337426-53337445 | MS.gene58684:intron | 30.0% | |
| GTCAAATAATGTTGTAGTTG+TGG | - | chr2.3:53338130-53338149 | MS.gene58684:CDS | 30.0% | |
| GTTCCAATTGTGAAATTAGA+TGG | - | chr2.3:53337888-53337907 | MS.gene58684:intron | 30.0% | |
| TACTTGATATGAAGGTTTCA+TGG | + | chr2.3:53337452-53337471 | None:intergenic | 30.0% | |
| TCCAATTGTGAAATTAGATG+GGG | - | chr2.3:53337890-53337909 | MS.gene58684:intron | 30.0% | |
| TCTCACCAAACAATACTAAA+GGG | - | chr2.3:53336155-53336174 | MS.gene58684:CDS | 30.0% | |
| TGCATCAATCAAAGTAGTAA+AGG | + | chr2.3:53335436-53335455 | None:intergenic | 30.0% | |
| TGGAGTTATTAAGAAATTGC+AGG | + | chr2.3:53336093-53336112 | None:intergenic | 30.0% | |
| TTGAGTGAGACTTAAATTGA+TGG | + | chr2.3:53336113-53336132 | None:intergenic | 30.0% | |
| TTGATGCATTTAACTCAACA+AGG | + | chr2.3:53337215-53337234 | None:intergenic | 30.0% | |
| TTGTTCAAGTAATCTGTTGT+TGG | + | chr2.3:53337271-53337290 | None:intergenic | 30.0% | |
| ! | AAAGGTGAAAGACAATTTTC+GGG | - | chr2.3:53337507-53337526 | MS.gene58684:intron | 30.0% |
| ! | ACTTTTACATCAATGACCAA+AGG | - | chr2.3:53337140-53337159 | MS.gene58684:intron | 30.0% |
| ! | AGAACTCGAAAAAAGTACAA+GGG | - | chr2.3:53335652-53335671 | MS.gene58684:CDS | 30.0% |
| ! | CAAAGGTGAAAGACAATTTT+CGG | - | chr2.3:53337506-53337525 | MS.gene58684:intron | 30.0% |
| ! | GAATTTTGTTGAAGTTAGCA+GGG | - | chr2.3:53337676-53337695 | MS.gene58684:intron | 30.0% |
| ! | TATAACAAAGCAACAGGTTT+TGG | - | chr2.3:53337645-53337664 | MS.gene58684:intron | 30.0% |
| ! | TTTATGGTGTTTTCCAACAA+GGG | - | chr2.3:53336879-53336898 | MS.gene58684:intron | 30.0% |
| !! | GATTTGTTCATTTTCCAACA+AGG | + | chr2.3:53336217-53336236 | None:intergenic | 30.0% |
| !! | GGGTGATTTTTCAAATGTTT+TGG | - | chr2.3:53338022-53338041 | MS.gene58684:CDS | 30.0% |
| !!! | ATGATTTTAAGATCAACCGT+TGG | - | chr2.3:53337963-53337982 | MS.gene58684:intron | 30.0% |
| !!! | GGTGTTATCATTGATTTTCA+AGG | - | chr2.3:53335313-53335332 | MS.gene58684:CDS | 30.0% |
| !!! | GTTACGAATGGTTTTTTCTT+AGG | - | chr2.3:53337774-53337793 | MS.gene58684:intron | 30.0% |
| !!! | GTTATCATTGATTTTCAAGG+TGG | - | chr2.3:53335316-53335335 | MS.gene58684:CDS | 30.0% |
| !!! | TACGAATGGTTTTTTCTTAG+GGG | - | chr2.3:53337776-53337795 | MS.gene58684:intron | 30.0% |
| !!! | TCTTTTGATGTTTTAGCTCT+TGG | - | chr2.3:53336740-53336759 | MS.gene58684:intron | 30.0% |
| !!! | TGATTTTAAGATCAACCGTT+GGG | - | chr2.3:53337964-53337983 | MS.gene58684:intron | 30.0% |
| AAAGTGAGAAACCAGTTCAT+GGG | - | chr2.3:53338153-53338172 | MS.gene58684:CDS | 35.0% | |
| AAGTTGAATGTGGATGGTAA+TGG | - | chr2.3:53337987-53338006 | MS.gene58684:CDS | 35.0% | |
| AATCAATGATAACACCTCCA+AGG | + | chr2.3:53335309-53335328 | None:intergenic | 35.0% | |
| ACTGAATGTGCAACAAACTT+TGG | + | chr2.3:53338101-53338120 | None:intergenic | 35.0% | |
| AGCTTCTACAGCTTTCATAA+TGG | + | chr2.3:53335236-53335255 | None:intergenic | 35.0% | |
| CAAAGTAGTAAAGGAGGAAA+AGG | + | chr2.3:53335427-53335446 | None:intergenic | 35.0% | |
| CATCAAAAGAAAAGGAATGG+AGG | - | chr2.3:53336972-53336991 | MS.gene58684:intron | 35.0% | |
| CATCAATGACCAAAGGTAAA+TGG | - | chr2.3:53337147-53337166 | MS.gene58684:intron | 35.0% | |
| CCAATTGTGAAATTAGATGG+GGG | - | chr2.3:53337891-53337910 | MS.gene58684:intron | 35.0% | |
| CTCACCAAACAATACTAAAG+GGG | - | chr2.3:53336156-53336175 | MS.gene58684:CDS | 35.0% | |
| CTCTCACCAAACAATACTAA+AGG | - | chr2.3:53336154-53336173 | MS.gene58684:CDS | 35.0% | |
| GATCTGCACCATACTTAATT+GGG | + | chr2.3:53335186-53335205 | None:intergenic | 35.0% | |
| GCACAAACCAGACAAAATAA+AGG | - | chr2.3:53336351-53336370 | MS.gene58684:intron | 35.0% | |
| GGATGGAGTAAGATGTTAAA+AGG | + | chr2.3:53336712-53336731 | None:intergenic | 35.0% | |
| TCACCAAACAATACTAAAGG+GGG | - | chr2.3:53336157-53336176 | MS.gene58684:CDS | 35.0% | |
| TGCTGAGAAAATTGCAACAT+CGG | + | chr2.3:53337571-53337590 | None:intergenic | 35.0% | |
| TTAGGGCTTGAATTATTACC+AGG | - | chr2.3:53335274-53335293 | MS.gene58684:CDS | 35.0% | |
| TTCCAGCTACGAAAAAATTG+AGG | + | chr2.3:53335756-53335775 | None:intergenic | 35.0% | |
| TTCGTAACATGAACTTGAAC+AGG | + | chr2.3:53337762-53337781 | None:intergenic | 35.0% | |
| TTGAACTTTAATTCCTTCGG+TGG | + | chr2.3:53337424-53337443 | None:intergenic | 35.0% | |
| TTTCTCAAGTTTACCCTTGT+TGG | + | chr2.3:53336895-53336914 | None:intergenic | 35.0% | |
| ! | AGCCATAGGAATTGTTGTTA+GGG | - | chr2.3:53337590-53337609 | MS.gene58684:intron | 35.0% |
| ! | AGTGGGTTCAAAATTGTTAG+AGG | + | chr2.3:53336136-53336155 | None:intergenic | 35.0% |
| ! | ATGCTTTTGTTGCATTTTGG+AGG | + | chr2.3:53337248-53337267 | None:intergenic | 35.0% |
| ! | CAGAACTCGAAAAAAGTACA+AGG | - | chr2.3:53335651-53335670 | MS.gene58684:CDS | 35.0% |
| ! | GGAATTTTGTTGAAGTTAGC+AGG | - | chr2.3:53337675-53337694 | MS.gene58684:intron | 35.0% |
| ! | GTTCAAGTTCATGTTACGAA+TGG | - | chr2.3:53337762-53337781 | MS.gene58684:intron | 35.0% |
| ! | GTTTATGGTGTTTTCCAACA+AGG | - | chr2.3:53336878-53336897 | MS.gene58684:intron | 35.0% |
| ! | TAGTATTGTTTGGTGAGAGT+GGG | + | chr2.3:53336153-53336172 | None:intergenic | 35.0% |
| ! | TGCTTTTGTTGCATTTTGGA+GGG | + | chr2.3:53337247-53337266 | None:intergenic | 35.0% |
| ! | TGGATGCTTTTGTTGCATTT+TGG | + | chr2.3:53337251-53337270 | None:intergenic | 35.0% |
| ! | TTAGTATTGTTTGGTGAGAG+TGG | + | chr2.3:53336154-53336173 | None:intergenic | 35.0% |
| ! | TTATCTGTTTTGCACTGCTA+AGG | + | chr2.3:53336522-53336541 | None:intergenic | 35.0% |
| ! | TTCATTTTCCAACAAGGCTT+TGG | + | chr2.3:53336211-53336230 | None:intergenic | 35.0% |
| !!! | AACCTCAATTTTTTCGTAGC+TGG | - | chr2.3:53335751-53335770 | MS.gene58684:CDS | 35.0% |
| !!! | AATGGTTTTTTCTTAGGGGA+TGG | - | chr2.3:53337780-53337799 | MS.gene58684:intron | 35.0% |
| !!! | ACTCTTAACTTGTTTTCTGG+TGG | + | chr2.3:53335687-53335706 | None:intergenic | 35.0% |
| !!! | CAGATCTCCTTTATTTTGTC+TGG | + | chr2.3:53336361-53336380 | None:intergenic | 35.0% |
| !!! | CTCTTAACTTGTTTTCTGGT+GGG | + | chr2.3:53335686-53335705 | None:intergenic | 35.0% |
| AAGGTTCCTCCATTTACCTT+TGG | + | chr2.3:53337159-53337178 | None:intergenic | 40.0% | |
| AAGTGAGAAACCAGTTCATG+GGG | - | chr2.3:53338154-53338173 | MS.gene58684:CDS | 40.0% | |
| ATCCACATTCAACTTCCCAA+CGG | + | chr2.3:53337982-53338001 | None:intergenic | 40.0% | |
| CAATGACCAAAGGTAAATGG+AGG | - | chr2.3:53337150-53337169 | MS.gene58684:intron | 40.0% | |
| CCCCCATCTAATTTCACAAT+TGG | + | chr2.3:53337894-53337913 | None:intergenic | 40.0% | |
| GAAAGTGAGAAACCAGTTCA+TGG | - | chr2.3:53338152-53338171 | MS.gene58684:CDS | 40.0% | |
| GGATCTGCACCATACTTAAT+TGG | + | chr2.3:53335187-53335206 | None:intergenic | 40.0% | |
| GTGGTGTACCCAATTAAGTA+TGG | - | chr2.3:53335175-53335194 | MS.gene58684:CDS | 40.0% | |
| TAAAGGGGGCTAACAAGATA+TGG | - | chr2.3:53336171-53336190 | MS.gene58684:CDS | 40.0% | |
| TAATTCCTTCGGTGGTGAAA+TGG | + | chr2.3:53337416-53337435 | None:intergenic | 40.0% | |
| TAGCCCCCTTTAGTATTGTT+TGG | + | chr2.3:53336163-53336182 | None:intergenic | 40.0% | |
| TCCCATCACATTTCCTTCAT+CGG | - | chr2.3:53335357-53335376 | MS.gene58684:CDS | 40.0% | |
| TCCCCTAACAACAATTCCTA+TGG | + | chr2.3:53337595-53337614 | None:intergenic | 40.0% | |
| TTACCAGGAATTAGAGACCT+TGG | - | chr2.3:53335289-53335308 | MS.gene58684:CDS | 40.0% | |
| ! | AGCTCTTGGCACAAGTTTTA+AGG | - | chr2.3:53336754-53336773 | MS.gene58684:intron | 40.0% |
| ! | CAGCCATAGGAATTGTTGTT+AGG | - | chr2.3:53337589-53337608 | MS.gene58684:intron | 40.0% |
| ! | GCCATAGGAATTGTTGTTAG+GGG | - | chr2.3:53337591-53337610 | MS.gene58684:intron | 40.0% |
| ! | TCAACAAGGTGTCTATCAGT+TGG | + | chr2.3:53337201-53337220 | None:intergenic | 40.0% |
| ! | TGAGAAATCCAAAGCCTTGT+TGG | - | chr2.3:53336200-53336219 | MS.gene58684:intron | 40.0% |
| !! | AACAAAGCAACAGGTTTTGG+TGG | - | chr2.3:53337648-53337667 | MS.gene58684:intron | 40.0% |
| !! | ACAAGGCTTTGGATTTCTCA+AGG | + | chr2.3:53336200-53336219 | None:intergenic | 40.0% |
| !! | ACCTCGAAGAGGTTGATATA+CGG | - | chr2.3:53335779-53335798 | MS.gene58684:CDS | 40.0% |
| !! | GGATGGTAATGGCACAAAAT+GGG | - | chr2.3:53337998-53338017 | MS.gene58684:CDS | 40.0% |
| !! | TGGATGGTAATGGCACAAAA+TGG | - | chr2.3:53337997-53338016 | MS.gene58684:CDS | 40.0% |
| !! | TGTTGCATTTTGGAGGGTTT+TGG | + | chr2.3:53337241-53337260 | None:intergenic | 40.0% |
| AACCGTTGGGAAGTTGAATG+TGG | - | chr2.3:53337977-53337996 | MS.gene58684:CDS | 45.0% | |
| AAGGAAACAACCCCATGAAC+TGG | + | chr2.3:53338167-53338186 | None:intergenic | 45.0% | |
| AAGTATGGTGCAGATCCAAC+TGG | - | chr2.3:53335190-53335209 | MS.gene58684:CDS | 45.0% | |
| AGCCGATGAAGGAAATGTGA+TGG | + | chr2.3:53335362-53335381 | None:intergenic | 45.0% | |
| AGTATGGTGCAGATCCAACT+GGG | - | chr2.3:53335191-53335210 | MS.gene58684:CDS | 45.0% | |
| ATCACATTTCCTTCATCGGC+TGG | - | chr2.3:53335361-53335380 | MS.gene58684:CDS | 45.0% | |
| CGATGAATATTCCTCCACCT+CGG | + | chr2.3:53337353-53337372 | None:intergenic | 45.0% | |
| CTCGGTAACTTGAATCGAAG+AGG | + | chr2.3:53337335-53337354 | None:intergenic | 45.0% | |
| CTTGGACAACACTCAACAGT+CGG | - | chr2.3:53337477-53337496 | MS.gene58684:intron | 45.0% | |
| GCCGATGAAGGAAATGTGAT+GGG | + | chr2.3:53335361-53335380 | None:intergenic | 45.0% | |
| GGACAAGCTAACATGATCAC+AGG | - | chr2.3:53337612-53337631 | MS.gene58684:intron | 45.0% | |
| GTGTTTCCTAGTACGCTTCT+AGG | + | chr2.3:53336067-53336086 | None:intergenic | 45.0% | |
| GTTGGGAAGTTGAATGTGGA+TGG | - | chr2.3:53337981-53338000 | MS.gene58684:CDS | 45.0% | |
| TCCGTATATCAACCTCTTCG+AGG | + | chr2.3:53335783-53335802 | None:intergenic | 45.0% | |
| ! | CTCTTCGATTCAAGTTACCG+AGG | - | chr2.3:53337333-53337352 | MS.gene58684:intron | 45.0% |
| ! | CTGCTTTCATTTTCCCCAGT+TGG | + | chr2.3:53335208-53335227 | None:intergenic | 45.0% |
| ! | GCAATTTTCTCAGCAGCCAT+AGG | - | chr2.3:53337576-53337595 | MS.gene58684:intron | 45.0% |
| ! | GGTAATGGCACAAAATGGGT+GGG | - | chr2.3:53338002-53338021 | MS.gene58684:CDS | 45.0% |
| ! | TTCGATTCAAGTTACCGAGG+TGG | - | chr2.3:53337336-53337355 | MS.gene58684:intron | 45.0% |
| !! | GCAACAGGTTTTGGTGGAAT+TGG | - | chr2.3:53337654-53337673 | MS.gene58684:intron | 45.0% |
| !! | TGGTAATGGCACAAAATGGG+TGG | - | chr2.3:53338001-53338020 | MS.gene58684:CDS | 45.0% |
| !! | AATTTAAATAAAACATTATT+TGG | + | chr2.3:53335858-53335877 | None:intergenic | 5.0% |
| ACAAGATTGCCAGCCGATGA+AGG | + | chr2.3:53335373-53335392 | None:intergenic | 50.0% | |
| AGCTGGAAAACACCTCGAAG+AGG | - | chr2.3:53335768-53335787 | MS.gene58684:CDS | 50.0% | |
| CCAGGAATTAGAGACCTTGG+AGG | - | chr2.3:53335292-53335311 | MS.gene58684:CDS | 50.0% | |
| CCTAGTACGCTTCTAGGTAC+AGG | + | chr2.3:53336061-53336080 | None:intergenic | 50.0% | |
| CCTCCAAGGTCTCTAATTCC+TGG | + | chr2.3:53335295-53335314 | None:intergenic | 50.0% | |
| GTATGGTGCAGATCCAACTG+GGG | - | chr2.3:53335192-53335211 | MS.gene58684:CDS | 50.0% | |
| TTCCTCCATTTCACCACCGA+AGG | - | chr2.3:53337408-53337427 | MS.gene58684:intron | 50.0% | |
| TTCCTTCGGTGGTGAAATGG+AGG | + | chr2.3:53337413-53337432 | None:intergenic | 50.0% | |
| ! | CCTGTACCTAGAAGCGTACT+AGG | - | chr2.3:53336058-53336077 | MS.gene58684:CDS | 50.0% |
| ! | GATTCAAGTTACCGAGGTGG+AGG | - | chr2.3:53337339-53337358 | MS.gene58684:intron | 50.0% |
| ! | TTCATCGGCTGGCAATCTTG+TGG | - | chr2.3:53335372-53335391 | MS.gene58684:CDS | 50.0% |
| GCTTCTAGGTACAGGCTCAC+TGG | + | chr2.3:53336053-53336072 | None:intergenic | 55.0% | |
| GGACAACACTCAACAGTCGG+CGG | - | chr2.3:53337480-53337499 | MS.gene58684:intron | 55.0% | |
| TCAACAGTCGGCGGAGACAA+AGG | - | chr2.3:53337489-53337508 | MS.gene58684:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.3 | gene | 53335157 | 53338202 | 53335157 | ID=MS.gene58684 |
| chr2.3 | mRNA | 53335157 | 53338202 | 53335157 | ID=MS.gene58684.t1;Parent=MS.gene58684 |
| chr2.3 | exon | 53337966 | 53338202 | 53337966 | ID=MS.gene58684.t1.exon1;Parent=MS.gene58684.t1 |
| chr2.3 | CDS | 53337966 | 53338202 | 53337966 | ID=cds.MS.gene58684.t1;Parent=MS.gene58684.t1 |
| chr2.3 | exon | 53335157 | 53336197 | 53335157 | ID=MS.gene58684.t1.exon2;Parent=MS.gene58684.t1 |
| chr2.3 | CDS | 53335157 | 53336197 | 53335157 | ID=cds.MS.gene58684.t1;Parent=MS.gene58684.t1 |
| Gene Sequence |
| Protein sequence |
