Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58687.t1 | AFK47960.1 | 98.7 | 228 | 3 | 0 | 1 | 228 | 1 | 228 | 4.70E-127 | 463.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58687.t1 | A5PK19 | 31.3 | 201 | 122 | 7 | 5 | 195 | 8 | 202 | 1.8e-21 | 104.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58687.t1 | G7INF4 | 98.7 | 228 | 3 | 0 | 1 | 228 | 1 | 228 | 3.4e-127 | 463.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene060323 | MS.gene58687 | 0.865769 | 4.64E-65 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58687.t1 | MTR_2g035820 | 98.684 | 228 | 3 | 0 | 1 | 228 | 1 | 228 | 1.01e-169 | 466 |
MS.gene58687.t1 | MTR_0003s0620 | 51.049 | 143 | 69 | 1 | 2 | 144 | 7 | 148 | 1.46e-47 | 154 |
MS.gene58687.t1 | MTR_0003s0620 | 37.168 | 226 | 98 | 3 | 2 | 227 | 7 | 188 | 1.85e-42 | 143 |
MS.gene58687.t1 | MTR_8g085220 | 35.526 | 152 | 88 | 5 | 14 | 157 | 25 | 174 | 2.49e-20 | 89.4 |
MS.gene58687.t1 | MTR_8g085220 | 35.526 | 152 | 88 | 5 | 14 | 157 | 25 | 174 | 2.53e-20 | 89.4 |
MS.gene58687.t1 | MTR_4g068950 | 27.174 | 184 | 120 | 6 | 3 | 175 | 15 | 195 | 1.74e-19 | 84.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58687.t1 | AT3G17365 | 70.742 | 229 | 63 | 3 | 1 | 226 | 1 | 228 | 7.62e-121 | 343 |
MS.gene58687.t1 | AT3G17365 | 56.180 | 267 | 75 | 6 | 1 | 226 | 1 | 266 | 3.47e-99 | 290 |
MS.gene58687.t1 | AT3G60910 | 41.667 | 228 | 129 | 3 | 2 | 226 | 7 | 233 | 1.92e-62 | 196 |
MS.gene58687.t1 | AT3G60910 | 41.860 | 172 | 96 | 3 | 58 | 226 | 1 | 171 | 3.49e-43 | 144 |
MS.gene58687.t1 | AT4G34360 | 29.348 | 184 | 116 | 7 | 7 | 179 | 14 | 194 | 2.04e-20 | 87.0 |
MS.gene58687.t1 | AT2G31740 | 32.086 | 187 | 112 | 7 | 14 | 188 | 29 | 212 | 1.48e-17 | 81.6 |
Find 51 sgRNAs with CRISPR-Local
Find 119 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTAAGATGCTTGAGGAAATT+TGG | 0.165677 | 2.3:+53315463 | MS.gene58687:CDS |
TCTATCCTTGTTGTTGGTTC+TGG | 0.233828 | 2.3:+53314311 | MS.gene58687:CDS |
GTTGTTGGTTCTGGTAATTC+AGG | 0.253017 | 2.3:+53314320 | MS.gene58687:CDS |
TAGTTAGACAGATTTGAAAA+TGG | 0.318761 | 2.3:+53315147 | MS.gene58687:intron |
CCATCATTATTAAGTGGAAT+AGG | 0.346132 | 2.3:-53316125 | None:intergenic |
ACAATTAAACTCCATGTAAT+AGG | 0.352596 | 2.3:+53315799 | MS.gene58687:CDS |
GAGCCAAAGTAATATACTTT+TGG | 0.356009 | 2.3:-53314256 | None:intergenic |
TAGTGCAAATGTATATATAA+TGG | 0.365312 | 2.3:-53316187 | None:intergenic |
AGGAACTCTTGATTCTATCT+TGG | 0.371492 | 2.3:+53315333 | MS.gene58687:intron |
AACAAGGATAGATTGGTTCT+TGG | 0.386383 | 2.3:-53314300 | None:intergenic |
AACCAATCTATCCTTGTTGT+TGG | 0.393670 | 2.3:+53314305 | MS.gene58687:CDS |
GGACATCGGGATTCAGTCCT+AGG | 0.416500 | 2.3:-53316166 | None:intergenic |
ACAAGGATAGATTGGTTCTT+GGG | 0.427283 | 2.3:-53314299 | None:intergenic |
GTACCAAAAGTATATTACTT+TGG | 0.445138 | 2.3:+53314253 | MS.gene58687:CDS |
GGCTAAAGGAGTCTATATTC+TGG | 0.446501 | 2.3:+53315613 | MS.gene58687:CDS |
CCTATTCCACTTAATAATGA+TGG | 0.448893 | 2.3:+53316125 | MS.gene58687:CDS |
AACCAACAACAAGGATAGAT+TGG | 0.452329 | 2.3:-53314307 | None:intergenic |
GAGCTTCCATCATTATTAAG+TGG | 0.453928 | 2.3:-53316131 | None:intergenic |
CATATGGTGAATCATGGTAC+TGG | 0.459818 | 2.3:+53314192 | MS.gene58687:CDS |
GAACAAACAGTGATGGCAAC+AGG | 0.463928 | 2.3:+53314161 | None:intergenic |
ATAAGGATACACTTCAATTC+AGG | 0.464863 | 2.3:-53314656 | None:intergenic |
GGAACATAGAGATTGATGAT+AGG | 0.472893 | 2.3:-53314278 | None:intergenic |
AGCAAACGTAAGCGATATAG+TGG | 0.489409 | 2.3:-53315757 | None:intergenic |
ATGTATATATAATGGACATC+GGG | 0.504347 | 2.3:-53316179 | None:intergenic |
ATTTAAACCAACCTATTACA+TGG | 0.504757 | 2.3:-53315810 | None:intergenic |
TTATATATACATTTGCACTA+AGG | 0.515855 | 2.3:+53316190 | MS.gene58687:CDS |
TATAGGGTTCTCAAGGCTAA+AGG | 0.523386 | 2.3:+53315599 | MS.gene58687:intron |
GCAACAGGTACACAAGCATA+TGG | 0.530042 | 2.3:+53314176 | MS.gene58687:CDS |
GACCTGGTTCGTTTGTGTAA+CGG | 0.530093 | 2.3:-53314220 | None:intergenic |
TTTGGTTCTGTTATTGACAA+AGG | 0.530391 | 2.3:+53315205 | MS.gene58687:CDS |
CACAAGCATATGGTGAATCA+TGG | 0.535442 | 2.3:+53314186 | MS.gene58687:CDS |
TGCAGCGTTCAGTCAAGGCA+TGG | 0.540936 | 2.3:+53314547 | MS.gene58687:intron |
TTGTTTGCAGCGTTCAGTCA+AGG | 0.543732 | 2.3:+53314542 | MS.gene58687:intron |
GAACATTGATATTTCTTCAG+TGG | 0.546761 | 2.3:+53314598 | MS.gene58687:CDS |
AAAATCTGATAATCCACTCT+GGG | 0.552145 | 2.3:+53316091 | MS.gene58687:CDS |
AGTCAAGGCATGGTTGATGA+AGG | 0.554093 | 2.3:+53314557 | MS.gene58687:CDS |
TGGTACCAATCAAAAGGACC+TGG | 0.568031 | 2.3:-53314236 | None:intergenic |
AACCGTTACACAAACGAACC+AGG | 0.571683 | 2.3:+53314218 | MS.gene58687:CDS |
AGATGCTTGAGGAAATTTGG+AGG | 0.579739 | 2.3:+53315466 | MS.gene58687:CDS |
GGTTGATGAAGGTGGTTACA+AGG | 0.580058 | 2.3:+53314568 | MS.gene58687:CDS |
GACACACTATAGGGTTCTCA+AGG | 0.580644 | 2.3:+53315592 | MS.gene58687:intron |
AATGTATATATAATGGACAT+CGG | 0.584034 | 2.3:-53316180 | None:intergenic |
ACTTCAATTCAGGACGATCT+CGG | 0.586597 | 2.3:-53314646 | None:intergenic |
TGCTACGTGATTCATGCTCG+TGG | 0.598791 | 2.3:+53315776 | MS.gene58687:CDS |
GACATCGGGATTCAGTCCTA+GGG | 0.605591 | 2.3:-53316165 | None:intergenic |
CAAGGCATGGTTGATGAAGG+TGG | 0.620512 | 2.3:+53314560 | MS.gene58687:CDS |
ATATGGTGAATCATGGTACT+GGG | 0.622071 | 2.3:+53314193 | MS.gene58687:CDS |
ACATGCTACTAAGATGCTTG+AGG | 0.629503 | 2.3:+53315455 | MS.gene58687:CDS |
AGCTCTGTGGATGAAACCCT+AGG | 0.652280 | 2.3:+53316149 | MS.gene58687:CDS |
TAATAATGATGGAAGCTCTG+TGG | 0.664960 | 2.3:+53316136 | MS.gene58687:CDS |
AATTACCAGAACCAACAACA+AGG | 0.677098 | 2.3:-53314316 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAAACAATATATTTATACAA+AGG | - | chr2.3:53314981-53315000 | None:intergenic | 10.0% |
!! | ATGTATAAAAATATTTATTG+CGG | + | chr2.3:53314943-53314962 | MS.gene58687:intron | 10.0% |
!!! | AAAAAAAATGTTTTGTTTTT+TGG | - | chr2.3:53314355-53314374 | None:intergenic | 10.0% |
!!! | AAATGTTTTTTTTAGAAAAA+TGG | - | chr2.3:53315910-53315929 | None:intergenic | 10.0% |
!! | AACTTCATAATTTAAAAACA+TGG | - | chr2.3:53314704-53314723 | None:intergenic | 15.0% |
!! | ATTATATTTATAGAGAATTG+TGG | + | chr2.3:53314746-53314765 | MS.gene58687:intron | 15.0% |
!!! | ATGTTTTTAAATTATGAAGT+TGG | + | chr2.3:53314703-53314722 | MS.gene58687:intron | 15.0% |
!!! | ATTGTTTAATTTTGTTTTTC+AGG | + | chr2.3:53315313-53315332 | MS.gene58687:intron | 15.0% |
!! | AAATGAATCTATGAATGAAT+GGG | - | chr2.3:53315238-53315257 | None:intergenic | 20.0% |
!! | AACATGAATTAATCAACATA+AGG | - | chr2.3:53314676-53314695 | None:intergenic | 20.0% |
!! | ATTATAACATGGATATAACA+TGG | - | chr2.3:53315062-53315081 | None:intergenic | 20.0% |
!! | CAAATGAAAAAGAATAAATG+GGG | - | chr2.3:53314417-53314436 | None:intergenic | 20.0% |
!! | CCAAATGAAAAAGAATAAAT+GGG | - | chr2.3:53314418-53314437 | None:intergenic | 20.0% |
!! | TAAATGAATCTATGAATGAA+TGG | - | chr2.3:53315239-53315258 | None:intergenic | 20.0% |
!! | TAGTGCAAATGTATATATAA+TGG | - | chr2.3:53316190-53316209 | None:intergenic | 20.0% |
!! | TTATAAAGGAACACATAAAT+AGG | - | chr2.3:53315946-53315965 | None:intergenic | 20.0% |
!! | TTATATATACATTTGCACTA+AGG | + | chr2.3:53316190-53316209 | MS.gene58687:CDS | 20.0% |
!!! | AATGTATATATAATGGACAT+CGG | - | chr2.3:53316183-53316202 | None:intergenic | 20.0% |
!!! | CCATTTATTCTTTTTCATTT+GGG | + | chr2.3:53314416-53314435 | MS.gene58687:intron | 20.0% |
!!! | TTTATAAAATTTTGCTGAAG+TGG | + | chr2.3:53315082-53315101 | MS.gene58687:intron | 20.0% |
!!! | TTTATACATGTTTAGTTTGA+TGG | - | chr2.3:53314932-53314951 | None:intergenic | 20.0% |
! | ACAATTAAACTCCATGTAAT+AGG | + | chr2.3:53315799-53315818 | MS.gene58687:CDS | 25.0% |
! | ATGGATATAACATGGAAAAT+TGG | - | chr2.3:53315054-53315073 | None:intergenic | 25.0% |
! | ATTTAAACCAACCTATTACA+TGG | - | chr2.3:53315813-53315832 | None:intergenic | 25.0% |
! | CAAAAAATGACAATGATAAG+AGG | - | chr2.3:53315836-53315855 | None:intergenic | 25.0% |
! | CCCAAATGAAAAAGAATAAA+TGG | - | chr2.3:53314419-53314438 | None:intergenic | 25.0% |
! | GAATAAATCTGAATACAACT+CGG | - | chr2.3:53315657-53315676 | None:intergenic | 25.0% |
! | TAGTTAGACAGATTTGAAAA+TGG | + | chr2.3:53315147-53315166 | MS.gene58687:intron | 25.0% |
! | TCAAATCTGTCTAACTATTA+AGG | - | chr2.3:53315144-53315163 | None:intergenic | 25.0% |
!! | GTACCAAAAGTATATTACTT+TGG | + | chr2.3:53314253-53314272 | MS.gene58687:CDS | 25.0% |
!!! | ATATTTTTGTTGTACTAGTG+TGG | + | chr2.3:53315417-53315436 | MS.gene58687:intron | 25.0% |
!!! | ATGTATATATAATGGACATC+GGG | - | chr2.3:53316182-53316201 | None:intergenic | 25.0% |
!!! | CCCATTTATTCTTTTTCATT+TGG | + | chr2.3:53314415-53314434 | MS.gene58687:intron | 25.0% |
AAAAATCTGATAATCCACTC+TGG | + | chr2.3:53316090-53316109 | MS.gene58687:CDS | 30.0% | |
AAAATCTGATAATCCACTCT+GGG | + | chr2.3:53316091-53316110 | MS.gene58687:CDS | 30.0% | |
AAGACATCAAAGTGTATGTT+TGG | + | chr2.3:53314796-53314815 | MS.gene58687:intron | 30.0% | |
AATCCAAAATGAAACAGAAG+TGG | - | chr2.3:53315530-53315549 | None:intergenic | 30.0% | |
ACATAAATAGGATGCTTCAA+AGG | - | chr2.3:53315934-53315953 | None:intergenic | 30.0% | |
ATAAGGATACACTTCAATTC+AGG | - | chr2.3:53314659-53314678 | None:intergenic | 30.0% | |
CATAAATAGGATGCTTCAAA+GGG | - | chr2.3:53315933-53315952 | None:intergenic | 30.0% | |
CCATCATTATTAAGTGGAAT+AGG | - | chr2.3:53316128-53316147 | None:intergenic | 30.0% | |
CCTATTCCACTTAATAATGA+TGG | + | chr2.3:53316125-53316144 | MS.gene58687:CDS | 30.0% | |
GAACATTGATATTTCTTCAG+TGG | + | chr2.3:53314598-53314617 | MS.gene58687:CDS | 30.0% | |
TTAAACTCCATGTAATAGGT+TGG | + | chr2.3:53315803-53315822 | MS.gene58687:intron | 30.0% | |
TTTATAAATTTGCGCCTCTT+CGG | + | chr2.3:53315959-53315978 | MS.gene58687:intron | 30.0% | |
! | AACTATGGACTTTTTGTTCA+TGG | - | chr2.3:53315502-53315521 | None:intergenic | 30.0% |
! | GAGCCAAAGTAATATACTTT+TGG | - | chr2.3:53314259-53314278 | None:intergenic | 30.0% |
! | TACTTTTGGTACCAATCAAA+AGG | - | chr2.3:53314245-53314264 | None:intergenic | 30.0% |
! | TAGTATCTCTAGTGTGATTT+TGG | + | chr2.3:53314847-53314866 | MS.gene58687:intron | 30.0% |
! | TTACCACTTCTGTTTCATTT+TGG | + | chr2.3:53315524-53315543 | MS.gene58687:intron | 30.0% |
!! | TTTGGTTCTGTTATTGACAA+AGG | + | chr2.3:53315205-53315224 | MS.gene58687:CDS | 30.0% |
AACCAACAACAAGGATAGAT+TGG | - | chr2.3:53314310-53314329 | None:intergenic | 35.0% | |
AAGTTTCTCTGCACATATCA+CGG | - | chr2.3:53316060-53316079 | None:intergenic | 35.0% | |
AATTACCAGAACCAACAACA+AGG | - | chr2.3:53314319-53314338 | None:intergenic | 35.0% | |
ACAGAAGTGGTAAAGAACTA+TGG | - | chr2.3:53315517-53315536 | None:intergenic | 35.0% | |
ACTCCAGATATGAATGAACT+AGG | - | chr2.3:53316008-53316027 | None:intergenic | 35.0% | |
AGGAACTCTTGATTCTATCT+TGG | + | chr2.3:53315333-53315352 | MS.gene58687:intron | 35.0% | |
ATATGGTGAATCATGGTACT+GGG | + | chr2.3:53314193-53314212 | MS.gene58687:CDS | 35.0% | |
ATGTGGGCATGTAAATTTCA+AGG | + | chr2.3:53314496-53314515 | MS.gene58687:intron | 35.0% | |
CTAAGATGCTTGAGGAAATT+TGG | + | chr2.3:53315463-53315482 | MS.gene58687:CDS | 35.0% | |
GAACAGTTCATGTGTTAACT+TGG | - | chr2.3:53315861-53315880 | None:intergenic | 35.0% | |
GAGCTTCCATCATTATTAAG+TGG | - | chr2.3:53316134-53316153 | None:intergenic | 35.0% | |
GTCATCAACTGCTTCAATAA+TGG | - | chr2.3:53315575-53315594 | None:intergenic | 35.0% | |
TAGAGAATTGTGGTCAAATG+CGG | + | chr2.3:53314756-53314775 | MS.gene58687:intron | 35.0% | |
TTGCCTAGTTCATTCATATC+TGG | + | chr2.3:53316002-53316021 | MS.gene58687:intron | 35.0% | |
! | AACAAGGATAGATTGGTTCT+TGG | - | chr2.3:53314303-53314322 | None:intergenic | 35.0% |
! | AACCAATCTATCCTTGTTGT+TGG | + | chr2.3:53314305-53314324 | MS.gene58687:CDS | 35.0% |
! | AAGACTAACAGTTTGCTCAT+TGG | + | chr2.3:53315394-53315413 | MS.gene58687:intron | 35.0% |
! | ACAAGGATAGATTGGTTCTT+GGG | - | chr2.3:53314302-53314321 | None:intergenic | 35.0% |
! | ACCTTTTGTGTTATGCATGT+GGG | + | chr2.3:53314480-53314499 | MS.gene58687:intron | 35.0% |
! | GAAGAGGCGCAAATTTATAA+AGG | - | chr2.3:53315960-53315979 | None:intergenic | 35.0% |
! | GGAACATAGAGATTGATGAT+AGG | - | chr2.3:53314281-53314300 | None:intergenic | 35.0% |
! | TAATAATGATGGAAGCTCTG+TGG | + | chr2.3:53316136-53316155 | MS.gene58687:CDS | 35.0% |
!! | GTTTAGTTTGATGGTGAGTT+TGG | - | chr2.3:53314923-53314942 | None:intergenic | 35.0% |
ACATGCTACTAAGATGCTTG+AGG | + | chr2.3:53315455-53315474 | MS.gene58687:CDS | 40.0% | |
ACTTCAATTCAGGACGATCT+CGG | - | chr2.3:53314649-53314668 | None:intergenic | 40.0% | |
AGATGCTTGAGGAAATTTGG+AGG | + | chr2.3:53315466-53315485 | MS.gene58687:CDS | 40.0% | |
AGCAAACGTAAGCGATATAG+TGG | - | chr2.3:53315760-53315779 | None:intergenic | 40.0% | |
CAAAAATTGCAGGTGACGTA+TGG | + | chr2.3:53315730-53315749 | MS.gene58687:intron | 40.0% | |
CACAAGCATATGGTGAATCA+TGG | + | chr2.3:53314186-53314205 | MS.gene58687:CDS | 40.0% | |
CATATGGTGAATCATGGTAC+TGG | + | chr2.3:53314192-53314211 | MS.gene58687:CDS | 40.0% | |
GAATACAACTCGGTACTAAG+AGG | - | chr2.3:53315647-53315666 | None:intergenic | 40.0% | |
GCCTATATATTTGACCGAAG+AGG | - | chr2.3:53315976-53315995 | None:intergenic | 40.0% | |
GCCTCTTCGGTCAAATATAT+AGG | + | chr2.3:53315972-53315991 | MS.gene58687:intron | 40.0% | |
GGCTAAAGGAGTCTATATTC+TGG | + | chr2.3:53315613-53315632 | MS.gene58687:CDS | 40.0% | |
TATAGGGTTCTCAAGGCTAA+AGG | + | chr2.3:53315599-53315618 | MS.gene58687:intron | 40.0% | |
TGAATGCGTGCAAAAATTGC+AGG | + | chr2.3:53315720-53315739 | MS.gene58687:intron | 40.0% | |
! | CACCTTTTGTGTTATGCATG+TGG | + | chr2.3:53314479-53314498 | MS.gene58687:intron | 40.0% |
! | GCTTTTGCATCAGAGACTTT+TGG | + | chr2.3:53315187-53315206 | MS.gene58687:CDS | 40.0% |
! | GGATTCACAATGATTTTGCC+AGG | + | chr2.3:53314817-53314836 | MS.gene58687:intron | 40.0% |
! | TGATGATAGCGATGTTCTTG+AGG | + | chr2.3:53315109-53315128 | MS.gene58687:intron | 40.0% |
! | TTTTTGCACGCATTCAAGAC+CGG | - | chr2.3:53315716-53315735 | None:intergenic | 40.0% |
!! | AGCAGTTGATGACACACTAT+AGG | + | chr2.3:53315582-53315601 | MS.gene58687:intron | 40.0% |
!! | GCAGTTGATGACACACTATA+GGG | + | chr2.3:53315583-53315602 | MS.gene58687:intron | 40.0% |
!! | GTTGTTGGTTCTGGTAATTC+AGG | + | chr2.3:53314320-53314339 | MS.gene58687:CDS | 40.0% |
!! | TCTATCCTTGTTGTTGGTTC+TGG | + | chr2.3:53314311-53314330 | MS.gene58687:CDS | 40.0% |
AACCGTTACACAAACGAACC+AGG | + | chr2.3:53314218-53314237 | MS.gene58687:CDS | 45.0% | |
GACACACTATAGGGTTCTCA+AGG | + | chr2.3:53315592-53315611 | MS.gene58687:intron | 45.0% | |
GCAACAGGTACACAAGCATA+TGG | + | chr2.3:53314176-53314195 | MS.gene58687:CDS | 45.0% | |
GCCCACATGCATAACACAAA+AGG | - | chr2.3:53314484-53314503 | None:intergenic | 45.0% | |
GTCTTAGCATTTCGCCTAAC+CGG | + | chr2.3:53315694-53315713 | MS.gene58687:intron | 45.0% | |
TAGAGATACTACTGCGATCC+TGG | - | chr2.3:53314838-53314857 | None:intergenic | 45.0% | |
TGGTACCAATCAAAAGGACC+TGG | - | chr2.3:53314239-53314258 | None:intergenic | 45.0% | |
TTGTTTGCAGCGTTCAGTCA+AGG | + | chr2.3:53314542-53314561 | MS.gene58687:intron | 45.0% | |
! | ACGAACCAGGTCCTTTTGAT+TGG | + | chr2.3:53314231-53314250 | MS.gene58687:CDS | 45.0% |
! | GACCTGGTTCGTTTGTGTAA+CGG | - | chr2.3:53314223-53314242 | None:intergenic | 45.0% |
!! | AGTCAAGGCATGGTTGATGA+AGG | + | chr2.3:53314557-53314576 | MS.gene58687:CDS | 45.0% |
!! | GGTTGATGAAGGTGGTTACA+AGG | + | chr2.3:53314568-53314587 | MS.gene58687:CDS | 45.0% |
!!! | AATTTTATAAAATTATAACA+TGG | - | chr2.3:53315073-53315092 | None:intergenic | 5.0% |
AGCTCTGTGGATGAAACCCT+AGG | + | chr2.3:53316149-53316168 | MS.gene58687:CDS | 50.0% | |
CTCTGCACATATCACGGAAG+TGG | - | chr2.3:53316054-53316073 | None:intergenic | 50.0% | |
GACATCGGGATTCAGTCCTA+GGG | - | chr2.3:53316168-53316187 | None:intergenic | 50.0% | |
TGAGTTTGGCAAGATCGCAC+TGG | - | chr2.3:53314909-53314928 | None:intergenic | 50.0% | |
TGCTACGTGATTCATGCTCG+TGG | + | chr2.3:53315776-53315795 | MS.gene58687:CDS | 50.0% | |
!! | CAAGGCATGGTTGATGAAGG+TGG | + | chr2.3:53314560-53314579 | MS.gene58687:CDS | 50.0% |
GCACGCATTCAAGACCGGTT+AGG | - | chr2.3:53315711-53315730 | None:intergenic | 55.0% | |
GGACATCGGGATTCAGTCCT+AGG | - | chr2.3:53316169-53316188 | None:intergenic | 55.0% | |
TGCAGCGTTCAGTCAAGGCA+TGG | + | chr2.3:53314547-53314566 | MS.gene58687:intron | 55.0% | |
!! | GGTTTTGTCAGCTCCCAGAG+TGG | - | chr2.3:53316107-53316126 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.3 | gene | 53314173 | 53316223 | 53314173 | ID=MS.gene58687 |
chr2.3 | mRNA | 53314173 | 53316223 | 53314173 | ID=MS.gene58687.t1;Parent=MS.gene58687 |
chr2.3 | exon | 53314173 | 53314341 | 53314173 | ID=MS.gene58687.t1.exon1;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53314173 | 53314341 | 53314173 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53314552 | 53314668 | 53314552 | ID=MS.gene58687.t1.exon2;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53314552 | 53314668 | 53314552 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53315158 | 53315226 | 53315158 | ID=MS.gene58687.t1.exon3;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53315158 | 53315226 | 53315158 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53315335 | 53315354 | 53315335 | ID=MS.gene58687.t1.exon4;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53315335 | 53315354 | 53315335 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53315435 | 53315487 | 53315435 | ID=MS.gene58687.t1.exon5;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53315435 | 53315487 | 53315435 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53315604 | 53315634 | 53315604 | ID=MS.gene58687.t1.exon6;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53315604 | 53315634 | 53315604 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53315742 | 53315820 | 53315742 | ID=MS.gene58687.t1.exon7;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53315742 | 53315820 | 53315742 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
chr2.3 | exon | 53316072 | 53316223 | 53316072 | ID=MS.gene58687.t1.exon8;Parent=MS.gene58687.t1 |
chr2.3 | CDS | 53316072 | 53316223 | 53316072 | ID=cds.MS.gene58687.t1;Parent=MS.gene58687.t1 |
Gene Sequence |
Protein sequence |