Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060323.t1 | XP_003594886.1 | 99.6 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 1.70E-132 | 481.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060323.t1 | Q8N6R0 | 31.3 | 201 | 122 | 7 | 5 | 195 | 8 | 202 | 8.1e-22 | 105.5 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060323.t1 | G7INF4 | 99.6 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 1.2e-132 | 481.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060323 | MS.gene073461 | 0.853287 | 2.64E-61 | -1.69E-46 |
| MS.gene060323 | MS.gene58687 | 0.865769 | 4.64E-65 | -1.69E-46 |
| MS.gene060323 | MS.gene90839 | 0.801672 | 8.06E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060323.t1 | MTR_2g035820 | 99.576 | 236 | 1 | 0 | 1 | 236 | 1 | 236 | 2.79e-177 | 486 |
| MS.gene060323.t1 | MTR_0003s0620 | 51.748 | 143 | 68 | 1 | 2 | 144 | 7 | 148 | 4.19e-48 | 155 |
| MS.gene060323.t1 | MTR_0003s0620 | 36.638 | 232 | 103 | 3 | 2 | 233 | 7 | 194 | 1.35e-42 | 143 |
| MS.gene060323.t1 | MTR_8g085220 | 35.526 | 152 | 88 | 5 | 14 | 157 | 25 | 174 | 1.26e-20 | 90.5 |
| MS.gene060323.t1 | MTR_8g085220 | 35.526 | 152 | 88 | 5 | 14 | 157 | 25 | 174 | 1.35e-20 | 90.5 |
| MS.gene060323.t1 | MTR_4g068950 | 27.174 | 184 | 120 | 6 | 3 | 175 | 15 | 195 | 2.98e-19 | 84.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene060323.t1 | AT3G17365 | 69.038 | 239 | 70 | 3 | 1 | 236 | 1 | 238 | 1.16e-122 | 348 |
| MS.gene060323.t1 | AT3G17365 | 55.235 | 277 | 82 | 6 | 1 | 236 | 1 | 276 | 9.18e-101 | 294 |
| MS.gene060323.t1 | AT3G60910 | 41.921 | 229 | 129 | 3 | 2 | 227 | 7 | 234 | 3.87e-63 | 197 |
| MS.gene060323.t1 | AT3G60910 | 42.197 | 173 | 96 | 3 | 58 | 227 | 1 | 172 | 6.85e-44 | 146 |
| MS.gene060323.t1 | AT4G34360 | 29.444 | 180 | 113 | 7 | 7 | 175 | 14 | 190 | 4.98e-20 | 85.9 |
| MS.gene060323.t1 | AT2G31740 | 31.551 | 187 | 113 | 7 | 14 | 188 | 29 | 212 | 2.90e-17 | 80.9 |
Find 51 sgRNAs with CRISPR-Local
Find 222 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTAAGATGCTTGAGGAAATT+TGG | 0.165677 | 2.4:+53470505 | MS.gene060323:CDS |
| TCTATCCTTGTTGTTGGTTC+TGG | 0.233828 | 2.4:+53469352 | MS.gene060323:CDS |
| GTTGTTGGTTCTGGTAATTC+AGG | 0.253017 | 2.4:+53469361 | MS.gene060323:CDS |
| TAGTTAGACAGATTTGAAAA+TGG | 0.318761 | 2.4:+53470189 | MS.gene060323:intron |
| CCATCATTATTAAGTGGAAT+AGG | 0.346132 | 2.4:-53471167 | None:intergenic |
| ACAATTAAACTCCATGTAAT+AGG | 0.352596 | 2.4:+53470841 | MS.gene060323:CDS |
| GAGCCAAAGTAATATACTTT+TGG | 0.356009 | 2.4:-53469297 | None:intergenic |
| TAGTGCAAATGTATATATAA+TGG | 0.365312 | 2.4:-53471229 | None:intergenic |
| AGGAACTCTTGATTCTATCT+TGG | 0.371492 | 2.4:+53470375 | MS.gene060323:intron |
| AACAAGGATAGATTGGTTCT+TGG | 0.386383 | 2.4:-53469341 | None:intergenic |
| AACCAATCTATCCTTGTTGT+TGG | 0.393670 | 2.4:+53469346 | MS.gene060323:CDS |
| GGACATCGGGATTCAGTCCT+AGG | 0.416500 | 2.4:-53471208 | None:intergenic |
| ACAAGGATAGATTGGTTCTT+GGG | 0.427283 | 2.4:-53469340 | None:intergenic |
| GTACCAAAAGTATATTACTT+TGG | 0.445138 | 2.4:+53469294 | MS.gene060323:CDS |
| GGCTAAAGGAGTCTATATTC+TGG | 0.446501 | 2.4:+53470655 | MS.gene060323:CDS |
| CCTATTCCACTTAATAATGA+TGG | 0.448893 | 2.4:+53471167 | MS.gene060323:CDS |
| AACCAACAACAAGGATAGAT+TGG | 0.452329 | 2.4:-53469348 | None:intergenic |
| GAGCTTCCATCATTATTAAG+TGG | 0.453928 | 2.4:-53471173 | None:intergenic |
| CATATGGTGAATCATGGTAC+TGG | 0.459818 | 2.4:+53469233 | MS.gene060323:CDS |
| GAACAAACAGTGATGGCAAC+AGG | 0.463928 | 2.4:+53469202 | None:intergenic |
| GGAACATAGAGATTGATGAT+AGG | 0.472893 | 2.4:-53469319 | None:intergenic |
| AGCAAACGTAAGCGATATAG+TGG | 0.489409 | 2.4:-53470799 | None:intergenic |
| ATGTATATATAATGGACATC+GGG | 0.504347 | 2.4:-53471221 | None:intergenic |
| ATTTAAACCAACCTATTACA+TGG | 0.504757 | 2.4:-53470852 | None:intergenic |
| TTATATATACATTTGCACTA+AGG | 0.515855 | 2.4:+53471232 | MS.gene060323:CDS |
| TATAGGGTTCTCAAGGCTAA+AGG | 0.523386 | 2.4:+53470641 | MS.gene060323:intron |
| GCAACAGGTACACAAGCATA+TGG | 0.530042 | 2.4:+53469217 | MS.gene060323:CDS |
| GACCTGGTTCGTTTGTGTAA+CGG | 0.530093 | 2.4:-53469261 | None:intergenic |
| TTTGGTTCTGTTATTGACAA+AGG | 0.530391 | 2.4:+53470247 | MS.gene060323:CDS |
| CACAAGCATATGGTGAATCA+TGG | 0.535442 | 2.4:+53469227 | MS.gene060323:CDS |
| TGCAGCGTTCAGTCAAGGCA+TGG | 0.540936 | 2.4:+53469589 | MS.gene060323:intron |
| TTGTTTGCAGCGTTCAGTCA+AGG | 0.543732 | 2.4:+53469584 | MS.gene060323:intron |
| GAACATTGATATTTCTTCAG+TGG | 0.546761 | 2.4:+53469640 | MS.gene060323:CDS |
| AAAATCTGATAATCCACTCT+GGG | 0.552145 | 2.4:+53471133 | MS.gene060323:CDS |
| AGTCAAGGCATGGTTGATGA+AGG | 0.554093 | 2.4:+53469599 | MS.gene060323:CDS |
| TGGTACCAATCAAAAGGACC+TGG | 0.568031 | 2.4:-53469277 | None:intergenic |
| AACCGTTACACAAACGAACC+AGG | 0.571683 | 2.4:+53469259 | MS.gene060323:CDS |
| ATAAGGATACACTTCAATTG+AGG | 0.578933 | 2.4:-53469698 | None:intergenic |
| AGATGCTTGAGGAAATTTGG+AGG | 0.579739 | 2.4:+53470508 | MS.gene060323:CDS |
| GGTTGATGAAGGTGGTTACA+AGG | 0.580058 | 2.4:+53469610 | MS.gene060323:CDS |
| GACACACTATAGGGTTCTCA+AGG | 0.580644 | 2.4:+53470634 | MS.gene060323:intron |
| AATGTATATATAATGGACAT+CGG | 0.584034 | 2.4:-53471222 | None:intergenic |
| ACTTCAATTGAGGACGATCT+CGG | 0.589584 | 2.4:-53469688 | None:intergenic |
| TGCTACGTGATTCATGCTCG+TGG | 0.598791 | 2.4:+53470818 | MS.gene060323:CDS |
| GACATCGGGATTCAGTCCTA+GGG | 0.605591 | 2.4:-53471207 | None:intergenic |
| CAAGGCATGGTTGATGAAGG+TGG | 0.620512 | 2.4:+53469602 | MS.gene060323:CDS |
| ATATGGTGAATCATGGTACT+GGG | 0.622071 | 2.4:+53469234 | MS.gene060323:CDS |
| ACATGCTACTAAGATGCTTG+AGG | 0.629503 | 2.4:+53470497 | MS.gene060323:CDS |
| AGCTCTGTGGATGAAACCCT+AGG | 0.652280 | 2.4:+53471191 | MS.gene060323:CDS |
| TAATAATGATGGAAGCTCTG+TGG | 0.664960 | 2.4:+53471178 | MS.gene060323:CDS |
| AATTACCAGAACCAACAACA+AGG | 0.677098 | 2.4:-53469357 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACAATATATTTATACAA+AGG | - | chr2.4:53470023-53470042 | None:intergenic | 10.0% |
| !! | ATCAACAATATTAATAAAAT+GGG | + | chr2.4:53472233-53472252 | MS.gene060323:intron | 10.0% |
| !! | ATGTATAAAAATATTTATTG+CGG | + | chr2.4:53469985-53470004 | MS.gene060323:intron | 10.0% |
| !! | TATCAACAATATTAATAAAA+TGG | + | chr2.4:53472232-53472251 | MS.gene060323:intron | 10.0% |
| !!! | AAAAAAAATGTTTTGTTTTT+TGG | - | chr2.4:53469396-53469415 | None:intergenic | 10.0% |
| !!! | AAATGTTTTTTTTAGAAAAA+TGG | - | chr2.4:53470952-53470971 | None:intergenic | 10.0% |
| !! | AACTTCATAATTTAAAAACA+TGG | - | chr2.4:53469746-53469765 | None:intergenic | 15.0% |
| !! | ATTATATTTATAGAGAATTG+TGG | + | chr2.4:53469788-53469807 | MS.gene060323:intron | 15.0% |
| !!! | ATGTTTTTAAATTATGAAGT+TGG | + | chr2.4:53469745-53469764 | MS.gene060323:intron | 15.0% |
| !!! | ATTGTTTAATTTTGTTTTTC+AGG | + | chr2.4:53470355-53470374 | MS.gene060323:intron | 15.0% |
| !!! | TTTTATTATTCTACATTGAA+GGG | - | chr2.4:53471454-53471473 | None:intergenic | 15.0% |
| !!! | TTTTTATTATTCTACATTGA+AGG | - | chr2.4:53471455-53471474 | None:intergenic | 15.0% |
| !! | AAATGAATCTATGAATGAAT+GGG | - | chr2.4:53470280-53470299 | None:intergenic | 20.0% |
| !! | AACATGAATTAATCAACATA+AGG | - | chr2.4:53469718-53469737 | None:intergenic | 20.0% |
| !! | AATATTAATAAAATGGGAGA+AGG | + | chr2.4:53472239-53472258 | MS.gene060323:intron | 20.0% |
| !! | ATTATAACATGGATATAACA+TGG | - | chr2.4:53470104-53470123 | None:intergenic | 20.0% |
| !! | ATTTGAATAATTAATCGTCA+TGG | + | chr2.4:53473063-53473082 | MS.gene060323:intron | 20.0% |
| !! | CAAATGAAAAAGAATAAATG+GGG | - | chr2.4:53469458-53469477 | None:intergenic | 20.0% |
| !! | CCAAATGAAAAAGAATAAAT+GGG | - | chr2.4:53469459-53469478 | None:intergenic | 20.0% |
| !! | CGATTAATTATTCAAATTAG+CGG | - | chr2.4:53473060-53473079 | None:intergenic | 20.0% |
| !! | TAAATGAATCTATGAATGAA+TGG | - | chr2.4:53470281-53470300 | None:intergenic | 20.0% |
| !! | TAGTGCAAATGTATATATAA+TGG | - | chr2.4:53471232-53471251 | None:intergenic | 20.0% |
| !! | TTATAAAGGAACACATAAAT+AGG | - | chr2.4:53470988-53471007 | None:intergenic | 20.0% |
| !! | TTATATATACATTTGCACTA+AGG | + | chr2.4:53471232-53471251 | MS.gene060323:CDS | 20.0% |
| !!! | AAAAAATTTAGTTTCCTAAC+AGG | + | chr2.4:53471750-53471769 | MS.gene060323:intron | 20.0% |
| !!! | AATGTATATATAATGGACAT+CGG | - | chr2.4:53471225-53471244 | None:intergenic | 20.0% |
| !!! | AATTTTGTTGGCTATTTTAT+AGG | - | chr2.4:53471810-53471829 | None:intergenic | 20.0% |
| !!! | AGAATTTCTTTTATAAAGAG+AGG | - | chr2.4:53472738-53472757 | None:intergenic | 20.0% |
| !!! | CCATTTATTCTTTTTCATTT+GGG | + | chr2.4:53469457-53469476 | MS.gene060323:intron | 20.0% |
| !!! | GAATTTCTTTTATAAAGAGA+GGG | - | chr2.4:53472737-53472756 | None:intergenic | 20.0% |
| !!! | TTTATAAAATTTTGCTGAAG+TGG | + | chr2.4:53470124-53470143 | MS.gene060323:intron | 20.0% |
| !!! | TTTATACATGTTTAGTTTGA+TGG | - | chr2.4:53469974-53469993 | None:intergenic | 20.0% |
| !!! | TTTTAGATTTACTTTTGACT+TGG | + | chr2.4:53472435-53472454 | MS.gene060323:intron | 20.0% |
| ! | AAAATCTTCTTCACTCTAAA+GGG | - | chr2.4:53472520-53472539 | None:intergenic | 25.0% |
| ! | ACAATTAAACTCCATGTAAT+AGG | + | chr2.4:53470841-53470860 | MS.gene060323:CDS | 25.0% |
| ! | AGAAGAAACACAGTAATAAA+GGG | - | chr2.4:53472326-53472345 | None:intergenic | 25.0% |
| ! | ATGGATATAACATGGAAAAT+TGG | - | chr2.4:53470096-53470115 | None:intergenic | 25.0% |
| ! | ATGTGATTTATTTACTACGA+TGG | + | chr2.4:53472383-53472402 | MS.gene060323:intron | 25.0% |
| ! | ATTTAAACCAACCTATTACA+TGG | - | chr2.4:53470855-53470874 | None:intergenic | 25.0% |
| ! | CAAAAAATGACAATGATAAG+AGG | - | chr2.4:53470878-53470897 | None:intergenic | 25.0% |
| ! | CCCAAATGAAAAAGAATAAA+TGG | - | chr2.4:53469460-53469479 | None:intergenic | 25.0% |
| ! | GAATAAATCTGAATACAACT+CGG | - | chr2.4:53470699-53470718 | None:intergenic | 25.0% |
| ! | GTAGAATATAATGTACATCT+AGG | + | chr2.4:53472009-53472028 | MS.gene060323:intron | 25.0% |
| ! | TAGTTAGACAGATTTGAAAA+TGG | + | chr2.4:53470189-53470208 | MS.gene060323:intron | 25.0% |
| ! | TCAAATCTGTCTAACTATTA+AGG | - | chr2.4:53470186-53470205 | None:intergenic | 25.0% |
| ! | TCATCTTGTTGAAAATACTT+AGG | + | chr2.4:53472921-53472940 | MS.gene060323:intron | 25.0% |
| ! | TTAGACAACTCTCAAAAAAA+AGG | - | chr2.4:53471335-53471354 | None:intergenic | 25.0% |
| ! | TTCAACTAGATTATCAACAA+TGG | - | chr2.4:53472207-53472226 | None:intergenic | 25.0% |
| ! | TTTAATCAGTGTCATGTAAA+TGG | + | chr2.4:53471987-53472006 | MS.gene060323:intron | 25.0% |
| !! | GTACCAAAAGTATATTACTT+TGG | + | chr2.4:53469294-53469313 | MS.gene060323:CDS | 25.0% |
| !! | TACTTACTCTTTTATGTTCT+TGG | + | chr2.4:53471273-53471292 | MS.gene060323:intron | 25.0% |
| !! | TCATAAATTTTACCAAACGA+AGG | + | chr2.4:53471355-53471374 | MS.gene060323:intron | 25.0% |
| !!! | ACAGAATGATTAGTCTAAAT+AGG | - | chr2.4:53473141-53473160 | None:intergenic | 25.0% |
| !!! | ATATTTTTGTTGTACTAGTG+TGG | + | chr2.4:53470459-53470478 | MS.gene060323:intron | 25.0% |
| !!! | ATGTATATATAATGGACATC+GGG | - | chr2.4:53471224-53471243 | None:intergenic | 25.0% |
| !!! | CCCATTTATTCTTTTTCATT+TGG | + | chr2.4:53469456-53469475 | MS.gene060323:intron | 25.0% |
| AAAAATCTGATAATCCACTC+TGG | + | chr2.4:53471132-53471151 | MS.gene060323:CDS | 30.0% | |
| AAAATCTGATAATCCACTCT+GGG | + | chr2.4:53471133-53471152 | MS.gene060323:CDS | 30.0% | |
| AAGACATCAAAGTGTATGTT+TGG | + | chr2.4:53469838-53469857 | MS.gene060323:intron | 30.0% | |
| AATCCAAAATGAAACAGAAG+TGG | - | chr2.4:53470572-53470591 | None:intergenic | 30.0% | |
| ACATAAATAGGATGCTTCAA+AGG | - | chr2.4:53470976-53470995 | None:intergenic | 30.0% | |
| ACTAATGCACAATTTCACTT+CGG | - | chr2.4:53472569-53472588 | None:intergenic | 30.0% | |
| ATAAGGATACACTTCAATTG+AGG | - | chr2.4:53469701-53469720 | None:intergenic | 30.0% | |
| ATTATTCAAATTAGCGGCAA+TGG | - | chr2.4:53473054-53473073 | None:intergenic | 30.0% | |
| ATTGCATGTTAAGCTTAGAA+GGG | - | chr2.4:53472178-53472197 | None:intergenic | 30.0% | |
| ATTTGCGGATTTCCTATAAT+AGG | + | chr2.4:53471834-53471853 | MS.gene060323:intron | 30.0% | |
| CAAAATCTTCTTCACTCTAA+AGG | - | chr2.4:53472521-53472540 | None:intergenic | 30.0% | |
| CATAAATAGGATGCTTCAAA+GGG | - | chr2.4:53470975-53470994 | None:intergenic | 30.0% | |
| CCAACAAAATTATGCATTTG+CGG | + | chr2.4:53471819-53471838 | MS.gene060323:intron | 30.0% | |
| CCATCATTATTAAGTGGAAT+AGG | - | chr2.4:53471170-53471189 | None:intergenic | 30.0% | |
| CCTATTCCACTTAATAATGA+TGG | + | chr2.4:53471167-53471186 | MS.gene060323:CDS | 30.0% | |
| GAACATTGATATTTCTTCAG+TGG | + | chr2.4:53469640-53469659 | MS.gene060323:CDS | 30.0% | |
| GAGAAGAAACACAGTAATAA+AGG | - | chr2.4:53472327-53472346 | None:intergenic | 30.0% | |
| GCTTGTTCTTATAGAATGAT+TGG | - | chr2.4:53472062-53472081 | None:intergenic | 30.0% | |
| TCTGTTATAATCTTTCTGAC+AGG | + | chr2.4:53473156-53473175 | MS.gene060323:intron | 30.0% | |
| TGATTTATTTACTACGATGG+TGG | + | chr2.4:53472386-53472405 | MS.gene060323:intron | 30.0% | |
| TTAAACTCCATGTAATAGGT+TGG | + | chr2.4:53470845-53470864 | MS.gene060323:intron | 30.0% | |
| TTAGTCCCTAAAAGCAAATT+TGG | + | chr2.4:53472101-53472120 | MS.gene060323:intron | 30.0% | |
| TTATTCAAATTAGCGGCAAT+GGG | - | chr2.4:53473053-53473072 | None:intergenic | 30.0% | |
| TTGCATGAATTAGAAAGTCA+TGG | - | chr2.4:53471886-53471905 | None:intergenic | 30.0% | |
| TTTATAAATTTGCGCCTCTT+CGG | + | chr2.4:53471001-53471020 | MS.gene060323:intron | 30.0% | |
| TTTGCGGATTTCCTATAATA+GGG | + | chr2.4:53471835-53471854 | MS.gene060323:intron | 30.0% | |
| ! | AACTATGGACTTTTTGTTCA+TGG | - | chr2.4:53470544-53470563 | None:intergenic | 30.0% |
| ! | GAGCCAAAGTAATATACTTT+TGG | - | chr2.4:53469300-53469319 | None:intergenic | 30.0% |
| ! | GATTTTCCACTTCAAATTTG+CGG | - | chr2.4:53471432-53471451 | None:intergenic | 30.0% |
| ! | TACTTTTGGTACCAATCAAA+AGG | - | chr2.4:53469286-53469305 | None:intergenic | 30.0% |
| ! | TAGTATCTCTAGTGTGATTT+TGG | + | chr2.4:53469889-53469908 | MS.gene060323:intron | 30.0% |
| ! | TCTTTACAATGGTGGAAATA+TGG | + | chr2.4:53472616-53472635 | MS.gene060323:intron | 30.0% |
| ! | TTACCACTTCTGTTTCATTT+TGG | + | chr2.4:53470566-53470585 | MS.gene060323:intron | 30.0% |
| ! | TTCTTTTATAAAGAGAGGGA+AGG | - | chr2.4:53472733-53472752 | None:intergenic | 30.0% |
| !! | ATCCAACCAAATTTGCTTTT+AGG | - | chr2.4:53472110-53472129 | None:intergenic | 30.0% |
| !! | TCCAACCAAATTTGCTTTTA+GGG | - | chr2.4:53472109-53472128 | None:intergenic | 30.0% |
| !! | TGATTAGTCTAAATAGGCAA+AGG | - | chr2.4:53473135-53473154 | None:intergenic | 30.0% |
| !! | TTTCTTCTCCTTTTGAAAGT+TGG | + | chr2.4:53472338-53472357 | MS.gene060323:intron | 30.0% |
| !! | TTTGGTTCTGTTATTGACAA+AGG | + | chr2.4:53470247-53470266 | MS.gene060323:CDS | 30.0% |
| !!! | TTCGGTTTTCTAGTTTCTAT+CGG | - | chr2.4:53472551-53472570 | None:intergenic | 30.0% |
| AACCAACAACAAGGATAGAT+TGG | - | chr2.4:53469351-53469370 | None:intergenic | 35.0% | |
| AAGAAATTCTCCTAGACTTC+AGG | + | chr2.4:53472748-53472767 | MS.gene060323:intron | 35.0% | |
| AAGAAGATTGAAGAAGCTGA+AGG | - | chr2.4:53472796-53472815 | None:intergenic | 35.0% | |
| AAGATAAGCATAACGAAGAG+TGG | - | chr2.4:53471680-53471699 | None:intergenic | 35.0% | |
| AAGTTTCTCTGCACATATCA+CGG | - | chr2.4:53471102-53471121 | None:intergenic | 35.0% | |
| AATGATTGGAAACTCACGAA+TGG | - | chr2.4:53472048-53472067 | None:intergenic | 35.0% | |
| AATTACCAGAACCAACAACA+AGG | - | chr2.4:53469360-53469379 | None:intergenic | 35.0% | |
| ACAGAAGTGGTAAAGAACTA+TGG | - | chr2.4:53470559-53470578 | None:intergenic | 35.0% | |
| ACTCCAGATATGAATGAACT+AGG | - | chr2.4:53471050-53471069 | None:intergenic | 35.0% | |
| AGAAATTCTCCTAGACTTCA+GGG | + | chr2.4:53472749-53472768 | MS.gene060323:intron | 35.0% | |
| AGGAACTCTTGATTCTATCT+TGG | + | chr2.4:53470375-53470394 | MS.gene060323:intron | 35.0% | |
| ATATGGTGAATCATGGTACT+GGG | + | chr2.4:53469234-53469253 | MS.gene060323:CDS | 35.0% | |
| ATGTGGGCATGTAAATTTCA+AGG | + | chr2.4:53469538-53469557 | MS.gene060323:intron | 35.0% | |
| ATGTTCTTGGTCAATAGTGT+TGG | + | chr2.4:53471286-53471305 | MS.gene060323:intron | 35.0% | |
| ATTGCTCTGATATCAAGGTT+TGG | - | chr2.4:53471579-53471598 | None:intergenic | 35.0% | |
| CATTGCATGTTAAGCTTAGA+AGG | - | chr2.4:53472179-53472198 | None:intergenic | 35.0% | |
| CTAAGATGCTTGAGGAAATT+TGG | + | chr2.4:53470505-53470524 | MS.gene060323:CDS | 35.0% | |
| CTAAGCTTAACATGCAATGA+AGG | + | chr2.4:53472180-53472199 | MS.gene060323:intron | 35.0% | |
| CTGAAGGAATAAAGGTTGTT+AGG | - | chr2.4:53472780-53472799 | None:intergenic | 35.0% | |
| GAACAGTTCATGTGTTAACT+TGG | - | chr2.4:53470903-53470922 | None:intergenic | 35.0% | |
| GAGCTTCCATCATTATTAAG+TGG | - | chr2.4:53471176-53471195 | None:intergenic | 35.0% | |
| GATTCAGTGAAATTGCCTTA+GGG | - | chr2.4:53471627-53471646 | None:intergenic | 35.0% | |
| GGGAACAAATGAAAACTGAA+TGG | - | chr2.4:53473033-53473052 | None:intergenic | 35.0% | |
| GTCATCAACTGCTTCAATAA+TGG | - | chr2.4:53470617-53470636 | None:intergenic | 35.0% | |
| GTGGAAGGAATCAACTAATA+AGG | - | chr2.4:53471937-53471956 | None:intergenic | 35.0% | |
| TAGAGAATTGTGGTCAAATG+CGG | + | chr2.4:53469798-53469817 | MS.gene060323:intron | 35.0% | |
| TCCCTAAAAGCAAATTTGGT+TGG | + | chr2.4:53472105-53472124 | MS.gene060323:intron | 35.0% | |
| TGAAGAAGCTGAAGGAATAA+AGG | - | chr2.4:53472788-53472807 | None:intergenic | 35.0% | |
| TGAAGGAGAGTCAAAACATT+TGG | - | chr2.4:53471715-53471734 | None:intergenic | 35.0% | |
| TGAGATGTGTTCCCTATTAT+AGG | - | chr2.4:53471849-53471868 | None:intergenic | 35.0% | |
| TGATTCAGTGAAATTGCCTT+AGG | - | chr2.4:53471628-53471647 | None:intergenic | 35.0% | |
| TGCATTAGTGACTCTGATAA+TGG | + | chr2.4:53472580-53472599 | MS.gene060323:intron | 35.0% | |
| TTGCCTAGTTCATTCATATC+TGG | + | chr2.4:53471044-53471063 | MS.gene060323:intron | 35.0% | |
| TTGTTAAAGTTGCCTTCGTT+TGG | - | chr2.4:53471370-53471389 | None:intergenic | 35.0% | |
| ! | AACAAGGATAGATTGGTTCT+TGG | - | chr2.4:53469344-53469363 | None:intergenic | 35.0% |
| ! | AACCAATCTATCCTTGTTGT+TGG | + | chr2.4:53469346-53469365 | MS.gene060323:CDS | 35.0% |
| ! | AAGACTAACAGTTTGCTCAT+TGG | + | chr2.4:53470436-53470455 | MS.gene060323:intron | 35.0% |
| ! | AAGTACTGCCAACTTTCAAA+AGG | - | chr2.4:53472349-53472368 | None:intergenic | 35.0% |
| ! | ACAAGGATAGATTGGTTCTT+GGG | - | chr2.4:53469343-53469362 | None:intergenic | 35.0% |
| ! | ACCTTTTGTGTTATGCATGT+GGG | + | chr2.4:53469522-53469541 | MS.gene060323:intron | 35.0% |
| ! | CCGCAAATGCATAATTTTGT+TGG | - | chr2.4:53471822-53471841 | None:intergenic | 35.0% |
| ! | GAAGAGGCGCAAATTTATAA+AGG | - | chr2.4:53471002-53471021 | None:intergenic | 35.0% |
| ! | GGAACATAGAGATTGATGAT+AGG | - | chr2.4:53469322-53469341 | None:intergenic | 35.0% |
| ! | TAATAATGATGGAAGCTCTG+TGG | + | chr2.4:53471178-53471197 | MS.gene060323:CDS | 35.0% |
| ! | TTCTTCACTCTAAAGGGTAT+TGG | - | chr2.4:53472514-53472533 | None:intergenic | 35.0% |
| !! | GTTTAGTTTGATGGTGAGTT+TGG | - | chr2.4:53469965-53469984 | None:intergenic | 35.0% |
| !! | TTTGACTCGATGCATTTTGA+AGG | - | chr2.4:53471732-53471751 | None:intergenic | 35.0% |
| !!! | TTTTTTGAAGATAGCCAGTG+AGG | + | chr2.4:53471486-53471505 | MS.gene060323:intron | 35.0% |
| ACATGCTACTAAGATGCTTG+AGG | + | chr2.4:53470497-53470516 | MS.gene060323:CDS | 40.0% | |
| ACTTCAATTGAGGACGATCT+CGG | - | chr2.4:53469691-53469710 | None:intergenic | 40.0% | |
| AGATGCTTGAGGAAATTTGG+AGG | + | chr2.4:53470508-53470527 | MS.gene060323:CDS | 40.0% | |
| AGATTGCCGCAAATTTGAAG+TGG | + | chr2.4:53471423-53471442 | MS.gene060323:intron | 40.0% | |
| AGCAAACGTAAGCGATATAG+TGG | - | chr2.4:53470802-53470821 | None:intergenic | 40.0% | |
| CAAAAATTGCAGGTGACGTA+TGG | + | chr2.4:53470772-53470791 | MS.gene060323:intron | 40.0% | |
| CACAAGCATATGGTGAATCA+TGG | + | chr2.4:53469227-53469246 | MS.gene060323:CDS | 40.0% | |
| CATATGGTGAATCATGGTAC+TGG | + | chr2.4:53469233-53469252 | MS.gene060323:CDS | 40.0% | |
| CTTGAAGCTCTTTACAATGG+TGG | + | chr2.4:53472608-53472627 | MS.gene060323:intron | 40.0% | |
| GAAACTGCACTAGTGTGAAT+TGG | + | chr2.4:53472816-53472835 | MS.gene060323:intron | 40.0% | |
| GAATACAACTCGGTACTAAG+AGG | - | chr2.4:53470689-53470708 | None:intergenic | 40.0% | |
| GAGCTTGAAGCTCTTTACAA+TGG | + | chr2.4:53472605-53472624 | MS.gene060323:intron | 40.0% | |
| GCACAATTGCTCTGATATCA+AGG | - | chr2.4:53471584-53471603 | None:intergenic | 40.0% | |
| GCCTATATATTTGACCGAAG+AGG | - | chr2.4:53471018-53471037 | None:intergenic | 40.0% | |
| GCCTCTTCGGTCAAATATAT+AGG | + | chr2.4:53471014-53471033 | MS.gene060323:intron | 40.0% | |
| GGCTAAAGGAGTCTATATTC+TGG | + | chr2.4:53470655-53470674 | MS.gene060323:CDS | 40.0% | |
| GTCTCAAAATTCTCTCCCTA+AGG | + | chr2.4:53471609-53471628 | MS.gene060323:intron | 40.0% | |
| TAAGCATAACGAAGAGTGGA+CGG | - | chr2.4:53471676-53471695 | None:intergenic | 40.0% | |
| TAGGATATACCCTGAAGTCT+AGG | - | chr2.4:53472761-53472780 | None:intergenic | 40.0% | |
| TATAGGGTTCTCAAGGCTAA+AGG | + | chr2.4:53470641-53470660 | MS.gene060323:intron | 40.0% | |
| TCAAGTAAGTCCTCCTAAGT+AGG | - | chr2.4:53471527-53471546 | None:intergenic | 40.0% | |
| TGAATGCGTGCAAAAATTGC+AGG | + | chr2.4:53470762-53470781 | MS.gene060323:intron | 40.0% | |
| ! | AGGAAACTGATAGAGCATCA+GGG | - | chr2.4:53472873-53472892 | None:intergenic | 40.0% |
| ! | CACCTTTTGTGTTATGCATG+TGG | + | chr2.4:53469521-53469540 | MS.gene060323:intron | 40.0% |
| ! | GCTTTTGCATCAGAGACTTT+TGG | + | chr2.4:53470229-53470248 | MS.gene060323:CDS | 40.0% |
| ! | GGATTCACAATGATTTTGCC+AGG | + | chr2.4:53469859-53469878 | MS.gene060323:intron | 40.0% |
| ! | TGATGATAGCGATGTTCTTG+AGG | + | chr2.4:53470151-53470170 | MS.gene060323:intron | 40.0% |
| ! | TTTTTGCACGCATTCAAGAC+CGG | - | chr2.4:53470758-53470777 | None:intergenic | 40.0% |
| !! | AGCAGTTGATGACACACTAT+AGG | + | chr2.4:53470624-53470643 | MS.gene060323:intron | 40.0% |
| !! | GCAGTTGATGACACACTATA+GGG | + | chr2.4:53470625-53470644 | MS.gene060323:intron | 40.0% |
| !! | GTTGTTGGTTCTGGTAATTC+AGG | + | chr2.4:53469361-53469380 | MS.gene060323:CDS | 40.0% |
| !! | TCTATCCTTGTTGTTGGTTC+TGG | + | chr2.4:53469352-53469371 | MS.gene060323:CDS | 40.0% |
| !!! | GAGTGTTTTAACGAGATGAG+AGG | - | chr2.4:53472893-53472912 | None:intergenic | 40.0% |
| AACCGTTACACAAACGAACC+AGG | + | chr2.4:53469259-53469278 | MS.gene060323:CDS | 45.0% | |
| ATCAGGGTCCAGTAAATGTG+AGG | - | chr2.4:53472857-53472876 | None:intergenic | 45.0% | |
| CTTATGAGAGGATCTCTCTC+TGG | - | chr2.4:53472667-53472686 | None:intergenic | 45.0% | |
| GACACACTATAGGGTTCTCA+AGG | + | chr2.4:53470634-53470653 | MS.gene060323:intron | 45.0% | |
| GCAACAGGTACACAAGCATA+TGG | + | chr2.4:53469217-53469236 | MS.gene060323:CDS | 45.0% | |
| GCCCACATGCATAACACAAA+AGG | - | chr2.4:53469526-53469545 | None:intergenic | 45.0% | |
| GTCTCATTTGAGTCGTGACA+GGG | - | chr2.4:53471557-53471576 | None:intergenic | 45.0% | |
| GTCTTAGCATTTCGCCTAAC+CGG | + | chr2.4:53470736-53470755 | MS.gene060323:intron | 45.0% | |
| TAGAGATACTACTGCGATCC+TGG | - | chr2.4:53469880-53469899 | None:intergenic | 45.0% | |
| TCACTCCTACAGTCCTACTT+AGG | + | chr2.4:53471511-53471530 | MS.gene060323:intron | 45.0% | |
| TCAGGGTCCAGTAAATGTGA+GGG | - | chr2.4:53472856-53472875 | None:intergenic | 45.0% | |
| TGAAGAATCACTCGCCTGTT+AGG | - | chr2.4:53471767-53471786 | None:intergenic | 45.0% | |
| TGGTACCAATCAAAAGGACC+TGG | - | chr2.4:53469280-53469299 | None:intergenic | 45.0% | |
| TGTGAATTGGACCCGATGAT+GGG | + | chr2.4:53472829-53472848 | MS.gene060323:intron | 45.0% | |
| TTAAGACGACGTTCGTGTAG+TGG | - | chr2.4:53471956-53471975 | None:intergenic | 45.0% | |
| TTGTTTGCAGCGTTCAGTCA+AGG | + | chr2.4:53469584-53469603 | MS.gene060323:intron | 45.0% | |
| ! | ACGAACCAGGTCCTTTTGAT+TGG | + | chr2.4:53469272-53469291 | MS.gene060323:CDS | 45.0% |
| ! | GACCTGGTTCGTTTGTGTAA+CGG | - | chr2.4:53469264-53469283 | None:intergenic | 45.0% |
| ! | GAGGAAACTGATAGAGCATC+AGG | - | chr2.4:53472874-53472893 | None:intergenic | 45.0% |
| !! | AGTCAAGGCATGGTTGATGA+AGG | + | chr2.4:53469599-53469618 | MS.gene060323:CDS | 45.0% |
| !! | CGTGTCACTTCACTTATGAG+AGG | - | chr2.4:53472679-53472698 | None:intergenic | 45.0% |
| !! | GGTTGATGAAGGTGGTTACA+AGG | + | chr2.4:53469610-53469629 | MS.gene060323:CDS | 45.0% |
| !!! | AATTTTATAAAATTATAACA+TGG | - | chr2.4:53470115-53470134 | None:intergenic | 5.0% |
| AAATGTGAGGGGCCCATCAT+CGG | - | chr2.4:53472844-53472863 | None:intergenic | 50.0% | |
| AGAGGATCTCTCTCTGGTCT+TGG | - | chr2.4:53472661-53472680 | None:intergenic | 50.0% | |
| AGCTCTGTGGATGAAACCCT+AGG | + | chr2.4:53471191-53471210 | MS.gene060323:CDS | 50.0% | |
| CAGGGTCCAGTAAATGTGAG+GGG | - | chr2.4:53472855-53472874 | None:intergenic | 50.0% | |
| CTCCTACAGTCCTACTTAGG+AGG | + | chr2.4:53471514-53471533 | MS.gene060323:intron | 50.0% | |
| CTCTGCACATATCACGGAAG+TGG | - | chr2.4:53471096-53471115 | None:intergenic | 50.0% | |
| GACATCGGGATTCAGTCCTA+GGG | - | chr2.4:53471210-53471229 | None:intergenic | 50.0% | |
| GGTCTCATTTGAGTCGTGAC+AGG | - | chr2.4:53471558-53471577 | None:intergenic | 50.0% | |
| GTCCTCCTAAGTAGGACTGT+AGG | - | chr2.4:53471519-53471538 | None:intergenic | 50.0% | |
| GTGTGAATTGGACCCGATGA+TGG | + | chr2.4:53472828-53472847 | MS.gene060323:intron | 50.0% | |
| TCTCGAGAGAGAAGCAAGAC+AGG | - | chr2.4:53472483-53472502 | None:intergenic | 50.0% | |
| TGAGTTTGGCAAGATCGCAC+TGG | - | chr2.4:53469951-53469970 | None:intergenic | 50.0% | |
| TGCTACGTGATTCATGCTCG+TGG | + | chr2.4:53470818-53470837 | MS.gene060323:CDS | 50.0% | |
| !! | CAAGGCATGGTTGATGAAGG+TGG | + | chr2.4:53469602-53469621 | MS.gene060323:CDS | 50.0% |
| AATGTGAGGGGCCCATCATC+GGG | - | chr2.4:53472843-53472862 | None:intergenic | 55.0% | |
| CTGTAGGAGTGACACCTCAC+TGG | - | chr2.4:53471503-53471522 | None:intergenic | 55.0% | |
| GATGGGCCCCTCACATTTAC+TGG | + | chr2.4:53472846-53472865 | MS.gene060323:intron | 55.0% | |
| GCACGCATTCAAGACCGGTT+AGG | - | chr2.4:53470753-53470772 | None:intergenic | 55.0% | |
| GGACATCGGGATTCAGTCCT+AGG | - | chr2.4:53471211-53471230 | None:intergenic | 55.0% | |
| TGCAGCGTTCAGTCAAGGCA+TGG | + | chr2.4:53469589-53469608 | MS.gene060323:intron | 55.0% | |
| ! | GACGACGTTCGTGTAGTGGA+AGG | - | chr2.4:53471952-53471971 | None:intergenic | 55.0% |
| !! | GGTTTTGTCAGCTCCCAGAG+TGG | - | chr2.4:53471149-53471168 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr2.4 | gene | 53469214 | 53473210 | 53469214 | ID=MS.gene060323 |
| chr2.4 | mRNA | 53469214 | 53473210 | 53469214 | ID=MS.gene060323.t1;Parent=MS.gene060323 |
| chr2.4 | exon | 53469214 | 53469382 | 53469214 | ID=MS.gene060323.t1.exon1;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53469214 | 53469382 | 53469214 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53469594 | 53469710 | 53469594 | ID=MS.gene060323.t1.exon2;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53469594 | 53469710 | 53469594 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53470200 | 53470268 | 53470200 | ID=MS.gene060323.t1.exon3;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53470200 | 53470268 | 53470200 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53470377 | 53470396 | 53470377 | ID=MS.gene060323.t1.exon4;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53470377 | 53470396 | 53470377 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53470477 | 53470529 | 53470477 | ID=MS.gene060323.t1.exon5;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53470477 | 53470529 | 53470477 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53470646 | 53470676 | 53470646 | ID=MS.gene060323.t1.exon6;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53470646 | 53470676 | 53470646 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53470784 | 53470862 | 53470784 | ID=MS.gene060323.t1.exon7;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53470784 | 53470862 | 53470784 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53471114 | 53471253 | 53471114 | ID=MS.gene060323.t1.exon8;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53471114 | 53471253 | 53471114 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| chr2.4 | exon | 53473178 | 53473210 | 53473178 | ID=MS.gene060323.t1.exon9;Parent=MS.gene060323.t1 |
| chr2.4 | CDS | 53473178 | 53473210 | 53473178 | ID=cds.MS.gene060323.t1;Parent=MS.gene060323.t1 |
| Gene Sequence |
| Protein sequence |
