AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene58888

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58888.t1 MTR_2g036390 96.026 151 6 0 1 151 1 151 6.78e-99 296
MS.gene58888.t1 MTR_2g036390 98.013 151 2 1 148 298 258 407 1.37e-98 296
MS.gene58888.t1 MTR_8g024240 84.000 150 24 0 149 298 236 385 3.86e-88 268
MS.gene58888.t1 MTR_8g024240 82.432 148 26 0 1 148 1 148 3.75e-83 255
MS.gene58888.t1 MTR_4g064893 52.532 158 75 0 140 297 237 394 1.54e-50 171
MS.gene58888.t1 MTR_4g064893 52.586 116 52 1 31 146 37 149 8.03e-35 130
MS.gene58888.t1 MTR_6g463330 30.986 142 94 3 158 297 763 902 2.51e-15 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene58888.t1 AT2G46800 86.486 148 20 0 151 298 251 398 1.89e-88 270
MS.gene58888.t1 AT2G46800 69.231 156 43 1 1 151 1 156 3.34e-69 220
MS.gene58888.t1 AT2G46800 86.486 148 20 0 151 298 251 398 1.89e-88 270
MS.gene58888.t1 AT2G46800 69.231 156 43 1 1 151 1 156 3.34e-69 220
MS.gene58888.t1 AT2G46800 86.486 148 20 0 151 298 251 398 1.89e-88 270
MS.gene58888.t1 AT2G46800 69.231 156 43 1 1 151 1 156 3.34e-69 220
MS.gene58888.t1 AT2G46800 86.486 148 20 0 151 298 251 398 1.89e-88 270
MS.gene58888.t1 AT2G46800 69.231 156 43 1 1 151 1 156 3.34e-69 220
MS.gene58888.t1 AT2G46800 86.486 148 20 0 151 298 251 398 1.89e-88 270
MS.gene58888.t1 AT2G46800 69.231 156 43 1 1 151 1 156 3.34e-69 220
MS.gene58888.t1 AT3G58810 81.757 148 27 0 151 298 245 392 3.31e-85 261
MS.gene58888.t1 AT3G58810 70.667 150 38 2 8 151 23 172 5.16e-65 209
MS.gene58888.t1 AT3G58810 81.757 148 27 0 151 298 284 431 3.73e-85 262
MS.gene58888.t1 AT3G58810 70.667 150 38 2 8 151 62 211 1.84e-64 209
MS.gene58888.t1 AT3G61940 75.168 149 37 0 150 298 186 334 1.41e-75 234
MS.gene58888.t1 AT3G61940 61.702 141 45 2 24 164 7 138 3.61e-54 179
MS.gene58888.t1 AT2G29410 46.309 149 80 0 149 297 225 373 6.75e-46 159
MS.gene58888.t1 AT2G29410 44.595 148 75 2 13 158 16 158 1.52e-34 129
MS.gene58888.t1 AT1G33020 60.000 60 20 1 239 298 489 544 1.12e-14 74.7
MS.gene58888.t1 AT2G04620 30.534 131 82 3 149 271 640 769 1.09e-11 65.9
MS.gene58888.t1 AT2G04620 30.534 131 82 3 149 271 460 589 1.64e-11 65.1
MS.gene58888.t1 AT2G04620 27.273 154 92 3 33 168 218 369 9.07e-11 62.8

Find 73 sgRNAs with CRISPR-Local

Find 119 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGGTTTCTATGCAATTAATA+TGG 0.258906 2.1:-53909995 MS.gene58888:CDS
TCCAGCCCATATAGAAAATA+AGG 0.287725 2.1:+53910079 None:intergenic
TATGTTCCGTTTCTTCTTCT+CGG 0.293379 2.1:+53909587 None:intergenic
TGAGGTAGTTGGTGGTATTA+AGG 0.314580 2.1:-53910168 MS.gene58888:CDS
CAACATGCTGAGAAACATTC+TGG 0.322869 2.1:-53909409 MS.gene58888:CDS
CAATTAATATGGCTGCTTGC+TGG 0.329178 2.1:-53909984 MS.gene58888:CDS
CCGAATCCTCGTCAGTCATT+TGG 0.330373 2.1:-53910047 MS.gene58888:CDS
CTGTTCATGAGCTGCACATA+TGG 0.341164 2.1:-53909305 MS.gene58888:CDS
TCAGATTCAAAAGGGGCTAT+TGG 0.341343 2.1:-53909346 MS.gene58888:CDS
AATAGAGATTCTTGGTGCTT+TGG 0.384622 2.1:-53910015 MS.gene58888:CDS
CAGAGTATTGGTGTAATGAT+TGG 0.384953 2.1:-53909522 MS.gene58888:CDS
AGAGTATTGGTGTAATGATT+GGG 0.403737 2.1:-53909521 MS.gene58888:CDS
AAACATTCTGGAAGTCTTGA+TGG 0.415617 2.1:-53909397 MS.gene58888:CDS
AATTAATATGGCTGCTTGCT+GGG 0.433529 2.1:-53909983 MS.gene58888:CDS
CCAAATGACTGACGAGGATT+CGG 0.433628 2.1:+53910047 None:intergenic
GCCATTGCTAGACTCATTGC+AGG 0.434083 2.1:-53909945 MS.gene58888:intron
ATGTTCCGTTTCTTCTTCTC+GGG 0.446423 2.1:+53909588 None:intergenic
TTCATGTCCGTTGAGGTAGT+TGG 0.447396 2.1:-53910179 MS.gene58888:CDS
TTTCTATATGGGCTGGAGGA+TGG 0.450599 2.1:-53910073 MS.gene58888:CDS
TTCTATATGGGCTGGAGGAT+GGG 0.456683 2.1:-53910072 MS.gene58888:CDS
ATCACATCAGCGTCTGCTTC+AGG 0.464844 2.1:+53909234 None:intergenic
GGGGCATATCTCCACGTACT+TGG 0.471011 2.1:-53909555 MS.gene58888:CDS
AGATGCTACTCAGATTCAAA+AGG 0.472347 2.1:-53909355 MS.gene58888:CDS
GCCGACCCGAGAAGAAGAAA+CGG 0.483223 2.1:-53909593 MS.gene58888:CDS
AAGCACCAAGAATCTCTATT+CGG 0.486057 2.1:+53910018 None:intergenic
CCATGTGAGTTCTCAGATGC+AGG 0.494225 2.1:-53910278 MS.gene58888:CDS
TCATATGGTATAAACCTGAA+TGG 0.495450 2.1:-53909491 MS.gene58888:CDS
CACATATGGGCCATTACAGT+GGG 0.495527 2.1:-53909291 MS.gene58888:CDS
CAATACCTTCCCCACTGTAA+TGG 0.500293 2.1:+53909281 None:intergenic
ATGTCCGTTGAGGTAGTTGG+TGG 0.504771 2.1:-53910176 MS.gene58888:CDS
AGCAGACGCTGATGTGATGC+TGG 0.509043 2.1:-53909229 MS.gene58888:CDS
GATGCTACTCAGATTCAAAA+GGG 0.519531 2.1:-53909354 MS.gene58888:CDS
ACAAGGTCGTAGACTACATC+AGG 0.528566 2.1:-53909206 MS.gene58888:CDS
TCTCAGCATGTTGATAGTTG+TGG 0.528970 2.1:+53909419 None:intergenic
TCAAAAGGGGCTATTGGAGA+TGG 0.528979 2.1:-53909340 MS.gene58888:CDS
TGATTTCAATTATTTGCCCA+TGG 0.531617 2.1:+53910345 None:intergenic
CAATCATTACACCAATACTC+TGG 0.548068 2.1:+53909523 None:intergenic
TCCGTTTCTTCTTCTCGGGT+CGG 0.548332 2.1:+53909592 None:intergenic
ATGTAGGAAGGAAAATTTGT+GGG 0.548918 2.1:-53910307 MS.gene58888:CDS
GGACATGAAAATAACGCAAA+GGG 0.552650 2.1:+53910193 None:intergenic
AGTGGAGAACTCCCTGATGT+AGG 0.568018 2.1:-53910323 MS.gene58888:CDS
AAACGGAACATAAATGTACA+TGG 0.573750 2.1:-53909576 MS.gene58888:CDS
TGTTCATGAGCTGCACATAT+GGG 0.573784 2.1:-53909304 MS.gene58888:CDS
GGAGACTCTATCCAGAGTAT+TGG 0.578371 2.1:-53909534 MS.gene58888:CDS
ATGGGCCATTACAGTGGGGA+AGG 0.591116 2.1:-53909286 MS.gene58888:CDS
GAGTATTGGTGTAATGATTG+GGG 0.591360 2.1:-53909520 MS.gene58888:CDS
GGGCAAATAATTGAAATCAG+TGG 0.595396 2.1:-53910341 MS.gene58888:CDS
CCATATAGAAAATAAGGAGA+TGG 0.595760 2.1:+53910085 None:intergenic
CGCTGATGTGATGCTGGACA+AGG 0.600547 2.1:-53909223 MS.gene58888:CDS
ACCTGCAATGAGTCTAGCAA+TGG 0.601692 2.1:+53909944 None:intergenic
ATTGGAGATGGAAGAAGTAG+TGG 0.601966 2.1:-53909328 MS.gene58888:CDS
GAGAACTCCCTGATGTAGGA+AGG 0.609906 2.1:-53910319 MS.gene58888:CDS
AAGCACAAAGTGGTCACCAT+GGG 0.612715 2.1:-53910361 MS.gene58888:CDS
GATGTAGGAAGGAAAATTTG+TGG 0.619238 2.1:-53910308 MS.gene58888:CDS
AACGGAACATAAATGTACAT+GGG 0.622867 2.1:-53909575 MS.gene58888:CDS
TTTCGAAGGATTCTGAAGAA+CGG 0.630672 2.1:-53910250 MS.gene58888:CDS
CCTGCATCTGAGAACTCACA+TGG 0.630931 2.1:+53910278 None:intergenic
AGATGCAGGATCTATTTCGA+AGG 0.632610 2.1:-53910264 MS.gene58888:CDS
GCACATATGGGCCATTACAG+TGG 0.634593 2.1:-53909292 MS.gene58888:CDS
CGGACATGAAAATAACGCAA+AGG 0.635615 2.1:+53910192 None:intergenic
AATACCACCAACTACCTCAA+CGG 0.636394 2.1:+53910172 None:intergenic
GAAGCACAAAGTGGTCACCA+TGG 0.639833 2.1:-53910362 MS.gene58888:CDS
GCGAAAGCTTCTGATAGCAG+TGG 0.645701 2.1:-53910216 MS.gene58888:CDS
TGAGTAGCATCTATCTCGCG+TGG 0.657042 2.1:+53909366 None:intergenic
GGATAGAGTCTCCAAGTACG+TGG 0.658730 2.1:+53909544 None:intergenic
AGGTCGTAGACTACATCAGG+AGG 0.671694 2.1:-53909203 MS.gene58888:CDS
ATGCTACTCAGATTCAAAAG+GGG 0.673395 2.1:-53909353 MS.gene58888:CDS
ACGGAACATAAATGTACATG+GGG 0.674674 2.1:-53909574 MS.gene58888:CDS
TTGCAGATGGAAGCACAAAG+TGG 0.690821 2.1:-53910371 None:intergenic
TGTAGGAAGGAAAATTTGTG+GGG 0.696003 2.1:-53910306 MS.gene58888:CDS
AGTATTGGTGTAATGATTGG+GGG 0.700635 2.1:-53909519 MS.gene58888:CDS
GGTCGTAGACTACATCAGGA+GGG 0.723067 2.1:-53909202 MS.gene58888:CDS
ACATATGGGCCATTACAGTG+GGG 0.768745 2.1:-53909290 MS.gene58888:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! TGGTTTCTATGCAATTAATA+TGG - chr2.1:53909531-53909550 MS.gene58888:CDS 25.0%
!! AATCTTTTCTGTAATTGTCT+TGG - chr2.1:53910084-53910103 MS.gene58888:CDS 25.0%
!!! CATCTCCTTATTTTCTATAT+GGG - chr2.1:53909442-53909461 MS.gene58888:CDS 25.0%
AAACGGAACATAAATGTACA+TGG - chr2.1:53909950-53909969 MS.gene58888:CDS 30.0%
AACGGAACATAAATGTACAT+GGG - chr2.1:53909951-53909970 MS.gene58888:CDS 30.0%
ATGTAGGAAGGAAAATTTGT+GGG - chr2.1:53909219-53909238 MS.gene58888:CDS 30.0%
CCATATAGAAAATAAGGAGA+TGG + chr2.1:53909444-53909463 None:intergenic 30.0%
TCATATGGTATAAACCTGAA+TGG - chr2.1:53910035-53910054 MS.gene58888:CDS 30.0%
TGATTTCAATTATTTGCCCA+TGG + chr2.1:53909184-53909203 None:intergenic 30.0%
! AAATCGACTATTTTCCATTC+AGG + chr2.1:53910052-53910071 None:intergenic 30.0%
! AAATTTTCCTTCCTACATCA+GGG + chr2.1:53909217-53909236 None:intergenic 30.0%
! AATGCTTTTCATCATCATGA+TGG + chr2.1:53909820-53909839 None:intergenic 30.0%
! TTTTTCCGAATAGAGATTCT+TGG - chr2.1:53909503-53909522 MS.gene58888:CDS 30.0%
!! AGAGTATTGGTGTAATGATT+GGG - chr2.1:53910005-53910024 MS.gene58888:CDS 30.0%
!! ATCATTATGGCTTTGGTATT+GGG - chr2.1:53909665-53909684 MS.gene58888:intron 30.0%
!!! CCATCTCCTTATTTTCTATA+TGG - chr2.1:53909441-53909460 MS.gene58888:CDS 30.0%
AAAAATCCAAATGACTGACG+AGG + chr2.1:53909488-53909507 None:intergenic 35.0%
AAGCACCAAGAATCTCTATT+CGG + chr2.1:53909511-53909530 None:intergenic 35.0%
AATTAATATGGCTGCTTGCT+GGG - chr2.1:53909543-53909562 MS.gene58888:CDS 35.0%
ACGGAACATAAATGTACATG+GGG - chr2.1:53909952-53909971 MS.gene58888:CDS 35.0%
AGATGCTACTCAGATTCAAA+AGG - chr2.1:53910171-53910190 MS.gene58888:CDS 35.0%
ATGCTACTCAGATTCAAAAG+GGG - chr2.1:53910173-53910192 MS.gene58888:CDS 35.0%
ATGTTTGTAGTTGCTGCATT+TGG - chr2.1:53909629-53909648 MS.gene58888:intron 35.0%
CAATCATTACACCAATACTC+TGG + chr2.1:53910006-53910025 None:intergenic 35.0%
GATGCTACTCAGATTCAAAA+GGG - chr2.1:53910172-53910191 MS.gene58888:CDS 35.0%
GATGTAGGAAGGAAAATTTG+TGG - chr2.1:53909218-53909237 MS.gene58888:CDS 35.0%
GGACATGAAAATAACGCAAA+GGG + chr2.1:53909336-53909355 None:intergenic 35.0%
GGGCAAATAATTGAAATCAG+TGG - chr2.1:53909185-53909204 MS.gene58888:CDS 35.0%
TATGTTCCGTTTCTTCTTCT+CGG + chr2.1:53909942-53909961 None:intergenic 35.0%
TCCAGCCCATATAGAAAATA+AGG + chr2.1:53909450-53909469 None:intergenic 35.0%
TCTTGTGGTGAACATCATTA+TGG - chr2.1:53909652-53909671 MS.gene58888:intron 35.0%
TGGTAGAAACTGAAATACCA+TGG + chr2.1:53909754-53909773 None:intergenic 35.0%
TGTAGGAAGGAAAATTTGTG+GGG - chr2.1:53909220-53909239 MS.gene58888:CDS 35.0%
! AAACATTCTGGAAGTCTTGA+TGG - chr2.1:53910129-53910148 MS.gene58888:CDS 35.0%
! CAAATTTTCCTTCCTACATC+AGG + chr2.1:53909218-53909237 None:intergenic 35.0%
! TTTCGAAGGATTCTGAAGAA+CGG - chr2.1:53909276-53909295 MS.gene58888:CDS 35.0%
!! AATAGAGATTCTTGGTGCTT+TGG - chr2.1:53909511-53909530 MS.gene58888:CDS 35.0%
!! AGTATTGGTGTAATGATTGG+GGG - chr2.1:53910007-53910026 MS.gene58888:CDS 35.0%
!! CAGAGTATTGGTGTAATGAT+TGG - chr2.1:53910004-53910023 MS.gene58888:CDS 35.0%
!! CATCATTATGGCTTTGGTAT+TGG - chr2.1:53909664-53909683 MS.gene58888:intron 35.0%
!! GAGTATTGGTGTAATGATTG+GGG - chr2.1:53910006-53910025 MS.gene58888:CDS 35.0%
!!! TCCTTATTTTCTATATGGGC+TGG - chr2.1:53909446-53909465 MS.gene58888:CDS 35.0%
!!! TTATTTTCTATATGGGCTGG+AGG - chr2.1:53909449-53909468 MS.gene58888:CDS 35.0%
AAAAACCCATCCACTTCTTG+AGG + chr2.1:53909608-53909627 None:intergenic 40.0%
AAACTGAAATACCATGGCTG+TGG + chr2.1:53909748-53909767 None:intergenic 40.0%
AATACCACCAACTACCTCAA+CGG + chr2.1:53909357-53909376 None:intergenic 40.0%
AGATGCAGGATCTATTTCGA+AGG - chr2.1:53909262-53909281 MS.gene58888:CDS 40.0%
ATGATGCTCATCTGTATGCT+TGG + chr2.1:53909774-53909793 None:intergenic 40.0%
ATGTTCCGTTTCTTCTTCTC+GGG + chr2.1:53909941-53909960 None:intergenic 40.0%
ATTGGAGATGGAAGAAGTAG+TGG - chr2.1:53910198-53910217 MS.gene58888:CDS 40.0%
CAACATGCTGAGAAACATTC+TGG - chr2.1:53910117-53910136 MS.gene58888:CDS 40.0%
CAATTAATATGGCTGCTTGC+TGG - chr2.1:53909542-53909561 MS.gene58888:CDS 40.0%
CCACTTCTTGGTGAATCAAA+AGG - chr2.1:53909911-53909930 MS.gene58888:intron 40.0%
CGGACATGAAAATAACGCAA+AGG + chr2.1:53909337-53909356 None:intergenic 40.0%
GGTGAACATCATTATGGCTT+TGG - chr2.1:53909658-53909677 MS.gene58888:intron 40.0%
TCAGATTCAAAAGGGGCTAT+TGG - chr2.1:53910180-53910199 MS.gene58888:CDS 40.0%
TGTTCATGAGCTGCACATAT+GGG - chr2.1:53910222-53910241 MS.gene58888:CDS 40.0%
!! CCTTTTGATTCACCAAGAAG+TGG + chr2.1:53909914-53909933 None:intergenic 40.0%
!! CGTTATTTTCATGTCCGTTG+AGG - chr2.1:53909340-53909359 MS.gene58888:CDS 40.0%
!! TCTCAGCATGTTGATAGTTG+TGG + chr2.1:53910110-53910129 None:intergenic 40.0%
!! TGAGGTAGTTGGTGGTATTA+AGG - chr2.1:53909358-53909377 MS.gene58888:CDS 40.0%
AAGCACAAAGTGGTCACCAT+GGG - chr2.1:53909165-53909184 MS.gene58888:CDS 45.0%
ACAAGGTCGTAGACTACATC+AGG - chr2.1:53910320-53910339 MS.gene58888:CDS 45.0%
ACATATGGGCCATTACAGTG+GGG - chr2.1:53910236-53910255 MS.gene58888:CDS 45.0%
ACCTGCAATGAGTCTAGCAA+TGG + chr2.1:53909585-53909604 None:intergenic 45.0%
CAATACCTTCCCCACTGTAA+TGG + chr2.1:53910248-53910267 None:intergenic 45.0%
CACATATGGGCCATTACAGT+GGG - chr2.1:53910235-53910254 MS.gene58888:CDS 45.0%
CAGTAACCTCTTTGTGGTCA+TGG + chr2.1:53909889-53909908 None:intergenic 45.0%
CCAAATGACTGACGAGGATT+CGG + chr2.1:53909482-53909501 None:intergenic 45.0%
CTGTTCATGAGCTGCACATA+TGG - chr2.1:53910221-53910240 MS.gene58888:CDS 45.0%
CTTTGTGGTCATGGTCATGA+TGG + chr2.1:53909880-53909899 None:intergenic 45.0%
GAGGTTACTGAACCACTTCT+TGG - chr2.1:53909899-53909918 MS.gene58888:intron 45.0%
GATGAGCATCATCACACACA+TGG - chr2.1:53909782-53909801 MS.gene58888:intron 45.0%
GGAGACTCTATCCAGAGTAT+TGG - chr2.1:53909992-53910011 MS.gene58888:CDS 45.0%
GTGGTTCAGTAACCTCTTTG+TGG + chr2.1:53909895-53909914 None:intergenic 45.0%
TCAAAAGGGGCTATTGGAGA+TGG - chr2.1:53910186-53910205 MS.gene58888:CDS 45.0%
TCATGACCATGACCACAAAG+AGG - chr2.1:53909880-53909899 MS.gene58888:intron 45.0%
TGATTGGGGGAGCAATCATA+TGG - chr2.1:53910020-53910039 MS.gene58888:CDS 45.0%
TTCATGTCCGTTGAGGTAGT+TGG - chr2.1:53909347-53909366 MS.gene58888:CDS 45.0%
! TTGGTATTGGGCCATGATCA+CGG - chr2.1:53909677-53909696 MS.gene58888:intron 45.0%
!! AGTTGCTGCATTTGGTCTTG+TGG - chr2.1:53909637-53909656 MS.gene58888:intron 45.0%
!! TTCTATATGGGCTGGAGGAT+GGG - chr2.1:53909454-53909473 MS.gene58888:CDS 45.0%
!! TTTCTATATGGGCTGGAGGA+TGG - chr2.1:53909453-53909472 MS.gene58888:CDS 45.0%
AGGTCGTAGACTACATCAGG+AGG - chr2.1:53910323-53910342 MS.gene58888:CDS 50.0%
AGTGGAGAACTCCCTGATGT+AGG - chr2.1:53909203-53909222 MS.gene58888:CDS 50.0%
ATCACATCAGCGTCTGCTTC+AGG + chr2.1:53910295-53910314 None:intergenic 50.0%
ATGTCCGTTGAGGTAGTTGG+TGG - chr2.1:53909350-53909369 MS.gene58888:CDS 50.0%
CAGGTCCTCAAGAAGTGGAT+GGG - chr2.1:53909600-53909619 MS.gene58888:intron 50.0%
CATGGCCATGGACATGATCA+CGG - chr2.1:53909701-53909720 MS.gene58888:intron 50.0%
CATTGCAGGTCCTCAAGAAG+TGG - chr2.1:53909595-53909614 MS.gene58888:CDS 50.0%
CCATGTGAGTTCTCAGATGC+AGG - chr2.1:53909248-53909267 MS.gene58888:CDS 50.0%
CCGAATCCTCGTCAGTCATT+TGG - chr2.1:53909479-53909498 MS.gene58888:CDS 50.0%
CCTGCATCTGAGAACTCACA+TGG + chr2.1:53909251-53909270 None:intergenic 50.0%
GAAGCACAAAGTGGTCACCA+TGG - chr2.1:53909164-53909183 MS.gene58888:CDS 50.0%
GAGAACTCCCTGATGTAGGA+AGG - chr2.1:53909207-53909226 MS.gene58888:CDS 50.0%
GCACATATGGGCCATTACAG+TGG - chr2.1:53910234-53910253 MS.gene58888:CDS 50.0%
GCCATTGCTAGACTCATTGC+AGG - chr2.1:53909581-53909600 MS.gene58888:CDS 50.0%
GCGAAAGCTTCTGATAGCAG+TGG - chr2.1:53909310-53909329 MS.gene58888:CDS 50.0%
GCGCATCATCATGAGTATGG+TGG + chr2.1:53909856-53909875 None:intergenic 50.0%
GGATAGAGTCTCCAAGTACG+TGG + chr2.1:53909985-53910004 None:intergenic 50.0%
GGTCGTAGACTACATCAGGA+GGG - chr2.1:53910324-53910343 MS.gene58888:CDS 50.0%
GGTGCGCATCATCATGAGTA+TGG + chr2.1:53909859-53909878 None:intergenic 50.0%
TCCGTTTCTTCTTCTCGGGT+CGG + chr2.1:53909937-53909956 None:intergenic 50.0%
TGAGTAGCATCTATCTCGCG+TGG + chr2.1:53910163-53910182 None:intergenic 50.0%
AGCAGACGCTGATGTGATGC+TGG - chr2.1:53910297-53910316 MS.gene58888:CDS 55.0%
ATGGGCCATTACAGTGGGGA+AGG - chr2.1:53910240-53910259 MS.gene58888:CDS 55.0%
CATGGACATGATCACGGCCA+CGG - chr2.1:53909707-53909726 MS.gene58888:intron 55.0%
CGCTGATGTGATGCTGGACA+AGG - chr2.1:53910303-53910322 MS.gene58888:CDS 55.0%
CGTGATCATGTCCATGGCCA+TGG + chr2.1:53909703-53909722 None:intergenic 55.0%
GATCATCATGGCCACAGCCA+TGG - chr2.1:53909734-53909753 MS.gene58888:intron 55.0%
GCAGGTCCTCAAGAAGTGGA+TGG - chr2.1:53909599-53909618 MS.gene58888:intron 55.0%
GCCGACCCGAGAAGAAGAAA+CGG - chr2.1:53909933-53909952 MS.gene58888:intron 55.0%
GGCCACGGACATGATCATCA+TGG - chr2.1:53909722-53909741 MS.gene58888:intron 55.0%
GGCCATGATGATCATGTCCG+TGG + chr2.1:53909727-53909746 None:intergenic 55.0%
GGGGCATATCTCCACGTACT+TGG - chr2.1:53909971-53909990 MS.gene58888:CDS 55.0%
CATGATCACGGCCATGGCCA+TGG - chr2.1:53909689-53909708 MS.gene58888:intron 60.0%
CATGGCCATGGCCGTGATCA+TGG + chr2.1:53909691-53909710 None:intergenic 60.0%
CGTGGCCGTGATCATGTCCA+TGG + chr2.1:53909709-53909728 None:intergenic 60.0%
TTGGGCCATGATCACGGCCA+TGG - chr2.1:53909683-53909702 MS.gene58888:intron 60.0%


Chromosome Type Strat End Strand Name
chr2.1 gene 53909161 53910387 53909161 ID=MS.gene58888
chr2.1 mRNA 53909161 53910387 53909161 ID=MS.gene58888.t1;Parent=MS.gene58888
chr2.1 exon 53909946 53910387 53909946 ID=MS.gene58888.t1.exon1;Parent=MS.gene58888.t1
chr2.1 CDS 53909946 53910387 53909946 ID=cds.MS.gene58888.t1;Parent=MS.gene58888.t1
chr2.1 exon 53909161 53909615 53909161 ID=MS.gene58888.t1.exon2;Parent=MS.gene58888.t1
chr2.1 CDS 53909161 53909615 53909161 ID=cds.MS.gene58888.t1;Parent=MS.gene58888.t1
Gene Sequence

>MS.gene58888

ATGGAAGCACAAAGTGGTCACCATGGGCAAATAATTGAAATCAGTGGAGAACTCCCTGATGTAGGAAGGAAAATTTGTGGGGAAGCACCATGTGAGTTCTCAGATGCAGGATCTATTTCGAAGGATTCTGAAGAACGGTCAACTTCTATGCGAAAGCTTCTGATAGCAGTGGCCCTTTGCGTTATTTTCATGTCCGTTGAGGTAGTTGGTGGTATTAAGGCTAACAGTCTTGCAATATTGACTGATGCAGCACATTTGCTTTCAGATGTTGCAGCATTTGCCATCTCCTTATTTTCTATATGGGCTGGAGGATGGGAACCGAATCCTCGTCAGTCATTTGGATTTTTCCGAATAGAGATTCTTGGTGCTTTGGTTTCTATGCAATTAATATGGCTGCTTGCTGGGATTCTTGTATATGAAGCCATTGCTAGACTCATTGCAGGTCCTCAAGAAGTGGATGGGTTTTTAATGTTTGTAGTTGCTGCATTTGGTCTTGTGGTGAACATCATTATGGCTTTGGTATTGGGCCATGATCACGGCCATGGCCATGGACATGATCACGGCCACGGACATGATCATCATGGCCACAGCCATGGTATTTCAGTTTCTACCAAGCATACAGATGAGCATCATCACACACATGGCGATCAGACTCACCATCATGATGATGAAAAGCATTCGAAAGATGAACACCACCATACTCATGATGATGCGCACCATCATGACCATGACCACAAAGAGGTTACTGAACCACTTCTTGGTGAATCAAAAGGCCGACCCGAGAAGAAGAAACGGAACATAAATGTACATGGGGCATATCTCCACGTACTTGGAGACTCTATCCAGAGTATTGGTGTAATGATTGGGGGAGCAATCATATGGTATAAACCTGAATGGAAAATAGTCGATTTGATTTGCACTCTAATCTTTTCTGTAATTGTCTTGGCCACAACTATCAACATGCTGAGAAACATTCTGGAAGTCTTGATGGAAAGCACACCACGCGAGATAGATGCTACTCAGATTCAAAAGGGGCTATTGGAGATGGAAGAAGTAGTGGCTGTTCATGAGCTGCACATATGGGCCATTACAGTGGGGAAGGTATTGCTAGCTTGTCATGTTAAAGTCATTCCTGAAGCAGACGCTGATGTGATGCTGGACAAGGTCGTAGACTACATCAGGAGGGTTCATAACATTAGTCATGTAACTATTCAAATAGAACGCTAA
Protein sequence

>MS.gene58888.t1

MEAQSGHHGQIIEISGELPDVGRKICGEAPCEFSDAGSISKDSEERSTSMRKLLIAVALCVIFMSVEVVGGIKANSLAILTDAAHLLSDVAAFAISLFSIWAGGWEPNPRQSFGFFRIEILGALVSMQLIWLLAGILVYEAIARLIAGRPEKKKRNINVHGAYLHVLGDSIQSIGVMIGGAIIWYKPEWKIVDLICTLIFSVIVLATTINMLRNILEVLMESTPREIDATQIQKGLLEMEEVVAVHELHIWAITVGKVLLACHVKVIPEADADVMLDKVVDYIRRVHNISHVTIQIER