Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58912.t1 | XP_013442679.1 | 95.9 | 320 | 12 | 1 | 16 | 335 | 18 | 336 | 1.30E-162 | 582.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58912.t1 | Q9SUC9 | 40.4 | 324 | 159 | 9 | 10 | 325 | 7 | 304 | 2.9e-49 | 197.2 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58912.t1 | G8A0D6 | 95.9 | 320 | 12 | 1 | 16 | 335 | 18 | 336 | 9.6e-163 | 582.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene055428 | MS.gene58912 | 0.804893 | 1.74E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58912.t1 | MTR_0110s0010 | 95.821 | 335 | 13 | 1 | 1 | 335 | 3 | 336 | 0.0 | 640 |
MS.gene58912.t1 | MTR_8g106870 | 60.580 | 345 | 114 | 9 | 3 | 335 | 1 | 335 | 6.79e-132 | 379 |
MS.gene58912.t1 | MTR_2g047975 | 39.871 | 311 | 157 | 12 | 26 | 323 | 20 | 313 | 2.92e-67 | 214 |
MS.gene58912.t1 | MTR_4g051000 | 42.909 | 275 | 123 | 8 | 45 | 307 | 25 | 277 | 1.92e-64 | 206 |
MS.gene58912.t1 | MTR_2g089530 | 42.909 | 275 | 123 | 8 | 45 | 307 | 25 | 277 | 1.92e-64 | 206 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene58912.t1 | AT3G18050 | 53.012 | 332 | 125 | 9 | 10 | 325 | 11 | 327 | 2.32e-103 | 307 |
MS.gene58912.t1 | AT4G28100 | 41.481 | 270 | 135 | 8 | 36 | 301 | 26 | 276 | 8.71e-65 | 207 |
Find 63 sgRNAs with CRISPR-Local
Find 123 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTTAATGTTGTTGGGAAAA+TGG | 0.205495 | 6.1:-71597879 | None:intergenic |
CTTTAACATAAGATTGTTCT+TGG | 0.214285 | 6.1:-71597913 | None:intergenic |
CAAGAACAATCTTATGTTAA+AGG | 0.223232 | 6.1:+71597914 | MS.gene58912:CDS |
AATGCATCAGGACAATTAAA+AGG | 0.223886 | 6.1:-71598274 | None:intergenic |
ATGCTTGAATAGTCTCTATT+TGG | 0.231094 | 6.1:+71598414 | MS.gene58912:CDS |
TTGTTGGGAAAATGGGATTA+AGG | 0.244672 | 6.1:-71597871 | None:intergenic |
TTTGTTCTTGTTACTTTGTT+TGG | 0.257627 | 6.1:+71600162 | MS.gene58912:CDS |
TGTATTGTTATTGTGGAATT+AGG | 0.288348 | 6.1:+71598245 | MS.gene58912:CDS |
AGTTCATTTGAGAGAGATAA+AGG | 0.312739 | 6.1:-71597941 | None:intergenic |
CAACAAAGATTGTGAGCTAA+TGG | 0.313129 | 6.1:+71599937 | MS.gene58912:CDS |
AGACAAAGTTGGTTGGAGTT+TGG | 0.338347 | 6.1:-71600134 | None:intergenic |
AGGGTTGATGATGTTGAGTT+TGG | 0.342737 | 6.1:-71597851 | None:intergenic |
ATCTTTGTTGTGAATCTTTG+TGG | 0.352616 | 6.1:-71599924 | None:intergenic |
AAGAACAATCTTATGTTAAA+GGG | 0.360626 | 6.1:+71597915 | MS.gene58912:CDS |
GTTAATGTTGTTGGGAAAAT+GGG | 0.361945 | 6.1:-71597878 | None:intergenic |
GGTAATGGATTTCAAGGTCT+TGG | 0.363694 | 6.1:+71598379 | MS.gene58912:CDS |
TGTTGGGAAAATGGGATTAA+GGG | 0.381048 | 6.1:-71597870 | None:intergenic |
AGAAGAGAATGTAGAGGAAA+AGG | 0.401985 | 6.1:-71597802 | None:intergenic |
ATCATCATTTGACATGCCTT+TGG | 0.404706 | 6.1:+71598126 | MS.gene58912:CDS |
ACCAGATCACAACTCTCATT+TGG | 0.407968 | 6.1:-71598223 | None:intergenic |
GAAGGGATTGTTAATGTTGT+TGG | 0.415245 | 6.1:-71597887 | None:intergenic |
TAAGATTGTTCTTGGAATGA+AGG | 0.431330 | 6.1:-71597905 | None:intergenic |
CATGGCTTCTGTCGAAGAAT+CGG | 0.431525 | 6.1:+71599966 | MS.gene58912:CDS |
AGGAAAAGGATCATGAGATA+TGG | 0.433767 | 6.1:-71597788 | None:intergenic |
TTGGAGATGGAAGTGTTAGA+AGG | 0.438920 | 6.1:+71598323 | MS.gene58912:CDS |
AAGGGATTGTTAATGTTGTT+GGG | 0.448059 | 6.1:-71597886 | None:intergenic |
AGATGGAAGTGTTAGAAGGT+TGG | 0.448408 | 6.1:+71598327 | MS.gene58912:CDS |
GATCTGGTGTATTGTTATTG+TGG | 0.449930 | 6.1:+71598238 | MS.gene58912:CDS |
TTTGTAACAGAAAATGCATC+AGG | 0.450155 | 6.1:-71598286 | None:intergenic |
TGGAGAAGAATTGCTTGAGT+AGG | 0.462891 | 6.1:+71598347 | MS.gene58912:CDS |
TATAACCATGCTGCAAGAAC+AGG | 0.468658 | 6.1:-71598040 | None:intergenic |
AACAAAGATTGTGAGCTAAT+GGG | 0.472319 | 6.1:+71599938 | MS.gene58912:CDS |
CGCGCTTTGCTGTTGAACAA+AGG | 0.483927 | 6.1:+71600022 | MS.gene58912:CDS |
AGTGGAGAACTTGTTGGAGA+TGG | 0.493754 | 6.1:+71598310 | MS.gene58912:CDS |
CTCTCAAATGAACTCTTCAA+TGG | 0.501979 | 6.1:+71597950 | MS.gene58912:CDS |
AAGATTGTTCTTGGAATGAA+GGG | 0.502562 | 6.1:-71597904 | None:intergenic |
TCAGATGAATCAACAGCTAA+AGG | 0.503505 | 6.1:-71600088 | None:intergenic |
ATGTGTGGATGGTTTGGAAA+AGG | 0.516088 | 6.1:+71598168 | MS.gene58912:CDS |
GAAAAGGCTTTGAAAGTGAG+AGG | 0.517885 | 6.1:+71598184 | MS.gene58912:CDS |
ATGCATCAGGACAATTAAAA+GGG | 0.535777 | 6.1:-71598273 | None:intergenic |
TCTGAGTCATCTGGTACCAA+AGG | 0.542932 | 6.1:-71598142 | None:intergenic |
ATTCAAGCAAAGAAGAAGAC+AGG | 0.547183 | 6.1:+71599900 | MS.gene58912:CDS |
TTGGTCTGATTTAAGTCATG+AGG | 0.554554 | 6.1:-71600212 | None:intergenic |
CTATTTAGAGTGCATGATTG+TGG | 0.557315 | 6.1:-71600055 | None:intergenic |
AATGGATTTCAAGGTCTTGG+AGG | 0.558012 | 6.1:+71598382 | MS.gene58912:CDS |
GCCAAATGAGAGTTGTGATC+TGG | 0.559658 | 6.1:+71598222 | MS.gene58912:CDS |
AACAAAGAAAGAGACAAAGT+TGG | 0.568133 | 6.1:-71600145 | None:intergenic |
AAGAAAGAGACAAAGTTGGT+TGG | 0.568482 | 6.1:-71600141 | None:intergenic |
ACGACGACGATGATGATGAA+TGG | 0.569447 | 6.1:-71598093 | None:intergenic |
TCATGCACTCTAAATAGTGA+TGG | 0.573743 | 6.1:+71600061 | MS.gene58912:CDS |
AGGATCATGAGATATGGAAG+TGG | 0.574801 | 6.1:-71597782 | None:intergenic |
TGAGTGAGACTCATGTAGGA+AGG | 0.575617 | 6.1:-71597827 | None:intergenic |
GTGAGCTAATGGGCTTGACA+TGG | 0.576016 | 6.1:+71599948 | MS.gene58912:CDS |
GAACAGGACAACATCGGCTA+CGG | 0.579954 | 6.1:-71598024 | None:intergenic |
AAGGGAAGAAGAGAATGTAG+AGG | 0.587484 | 6.1:-71597808 | None:intergenic |
GCTTTGCTGTTGAACAAAGG+TGG | 0.597774 | 6.1:+71600025 | MS.gene58912:CDS |
GTTGTCCTGTTCTTGCAGCA+TGG | 0.598312 | 6.1:+71598035 | MS.gene58912:CDS |
GAGTGAGACTCATGTAGGAA+GGG | 0.607216 | 6.1:-71597826 | None:intergenic |
TGGATGAGTGAGACTCATGT+AGG | 0.607867 | 6.1:-71597831 | None:intergenic |
CTGCAAGAACAGGACAACAT+CGG | 0.659169 | 6.1:-71598030 | None:intergenic |
GCATGTAGTTCATCAAAACA+TGG | 0.668065 | 6.1:+71597983 | MS.gene58912:CDS |
GCTTCTGTCGAAGAATCGGA+CGG | 0.672965 | 6.1:+71599970 | MS.gene58912:CDS |
TCGGACGGCTTATATTCACA+TGG | 0.704145 | 6.1:+71599985 | MS.gene58912:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | AAAATTATAATTTTTGTAGA+AGG | - | chr6.1:71598448-71598467 | None:intergenic | 10.0% |
!!! | TTTTTAAGTAAAAAACATTT+TGG | - | chr6.1:71599766-71599785 | None:intergenic | 10.0% |
!! | AATAAGATTAAAACAACTTA+TGG | - | chr6.1:71598808-71598827 | None:intergenic | 15.0% |
!! | GTTTATAGTTTATATGAAAA+CGG | + | chr6.1:71598861-71598880 | MS.gene58912:intron | 15.0% |
!!! | AAATCTTGTTTTACAAATAT+AGG | - | chr6.1:71599313-71599332 | None:intergenic | 15.0% |
!!! | CAATTATTTATGTATTGTTT+TGG | - | chr6.1:71599484-71599503 | None:intergenic | 15.0% |
!!! | TTTTTTTTTTCAAATGTAAG+TGG | + | chr6.1:71599526-71599545 | MS.gene58912:intron | 15.0% |
!! | AAGAACAATCTTATGTTAAA+GGG | + | chr6.1:71597915-71597934 | MS.gene58912:CDS | 20.0% |
!! | GAAAGAAATATAAGCAAAAA+TGG | - | chr6.1:71598684-71598703 | None:intergenic | 20.0% |
!! | GATATATGACTCAAAAAAAA+TGG | + | chr6.1:71599286-71599305 | MS.gene58912:intron | 20.0% |
!! | TTGTTTATATTTCATTCCAA+AGG | - | chr6.1:71598621-71598640 | None:intergenic | 20.0% |
!!! | CTTAATTTCTAGAAACATTA+AGG | - | chr6.1:71599098-71599117 | None:intergenic | 20.0% |
!!! | GTTTTAATCTTATTTCCATA+AGG | + | chr6.1:71598814-71598833 | MS.gene58912:intron | 20.0% |
!!! | TTTAGAATATGAAACAAAAG+TGG | - | chr6.1:71599838-71599857 | None:intergenic | 20.0% |
!!! | TTTTTGCTTATATTTCTTTC+CGG | + | chr6.1:71598684-71598703 | MS.gene58912:intron | 20.0% |
! | AACCATCATACATTAATGTT+TGG | - | chr6.1:71598983-71599002 | None:intergenic | 25.0% |
! | ATCCAAACATTAATGTATGA+TGG | + | chr6.1:71598978-71598997 | MS.gene58912:intron | 25.0% |
! | CAAGAACAATCTTATGTTAA+AGG | + | chr6.1:71597914-71597933 | MS.gene58912:CDS | 25.0% |
! | CTTTAACATAAGATTGTTCT+TGG | - | chr6.1:71597916-71597935 | None:intergenic | 25.0% |
! | TGTTGAAAATTGATGAAGAT+TGG | + | chr6.1:71598536-71598555 | MS.gene58912:intron | 25.0% |
! | TTGGTTGCAAAATAATTTCA+AGG | + | chr6.1:71599242-71599261 | MS.gene58912:intron | 25.0% |
!! | TAACTCTCTTTTGTTAACTT+TGG | + | chr6.1:71599223-71599242 | MS.gene58912:intron | 25.0% |
!! | TGTATTGTTATTGTGGAATT+AGG | + | chr6.1:71598245-71598264 | MS.gene58912:CDS | 25.0% |
!!! | AAAAATGGTAATGGATTTCA+AGG | + | chr6.1:71598373-71598392 | MS.gene58912:CDS | 25.0% |
!!! | ATGTTTTGATGTTCTTTGTT+TGG | + | chr6.1:71598484-71598503 | MS.gene58912:intron | 25.0% |
!!! | TTTATGTATTGTTTTGGTTG+AGG | - | chr6.1:71599478-71599497 | None:intergenic | 25.0% |
!!! | TTTGTTCTTGTTACTTTGTT+TGG | + | chr6.1:71600162-71600181 | MS.gene58912:CDS | 25.0% |
AACAAAGAAAGAGACAAAGT+TGG | - | chr6.1:71600148-71600167 | None:intergenic | 30.0% | |
AACAAAGATTGTGAGCTAAT+GGG | + | chr6.1:71599938-71599957 | MS.gene58912:CDS | 30.0% | |
AAGATTGTTCTTGGAATGAA+GGG | - | chr6.1:71597907-71597926 | None:intergenic | 30.0% | |
AAGGGATTGTTAATGTTGTT+GGG | - | chr6.1:71597889-71597908 | None:intergenic | 30.0% | |
AATGCATCAGGACAATTAAA+AGG | - | chr6.1:71598277-71598296 | None:intergenic | 30.0% | |
AGTAGGAAGAAAAATGGTAA+TGG | + | chr6.1:71598364-71598383 | MS.gene58912:CDS | 30.0% | |
AGTTCATTTGAGAGAGATAA+AGG | - | chr6.1:71597944-71597963 | None:intergenic | 30.0% | |
ATCTTCAAAACTCTACTTCA+AGG | - | chr6.1:71599717-71599736 | None:intergenic | 30.0% | |
ATGATAGCATAAAAGAGGTT+TGG | - | chr6.1:71599800-71599819 | None:intergenic | 30.0% | |
ATGCATCAGGACAATTAAAA+GGG | - | chr6.1:71598276-71598295 | None:intergenic | 30.0% | |
ATGCTTGAATAGTCTCTATT+TGG | + | chr6.1:71598414-71598433 | MS.gene58912:CDS | 30.0% | |
ATGTGTAATTCATAGACTAC+TGG | + | chr6.1:71599035-71599054 | MS.gene58912:intron | 30.0% | |
CACACACTTAAACTTTGATT+AGG | + | chr6.1:71599672-71599691 | MS.gene58912:intron | 30.0% | |
CTACATAAACCTAGTCAATT+TGG | + | chr6.1:71599380-71599399 | MS.gene58912:intron | 30.0% | |
CTTTGTGACATTGAATTTGA+TGG | + | chr6.1:71598509-71598528 | MS.gene58912:intron | 30.0% | |
GAATGATGATAGCATAAAAG+AGG | - | chr6.1:71599805-71599824 | None:intergenic | 30.0% | |
GTTAATGTTGTTGGGAAAAT+GGG | - | chr6.1:71597881-71597900 | None:intergenic | 30.0% | |
TAAGATTGTTCTTGGAATGA+AGG | - | chr6.1:71597908-71597927 | None:intergenic | 30.0% | |
TGTTAATGTTGTTGGGAAAA+TGG | - | chr6.1:71597882-71597901 | None:intergenic | 30.0% | |
TTTGTAACAGAAAATGCATC+AGG | - | chr6.1:71598289-71598308 | None:intergenic | 30.0% | |
! | ATCTTTGTTGTGAATCTTTG+TGG | - | chr6.1:71599927-71599946 | None:intergenic | 30.0% |
! | GCATTTTCTGTTACAAAAAG+TGG | + | chr6.1:71598292-71598311 | MS.gene58912:CDS | 30.0% |
! | TGGTACAACAGAATAACTTT+TGG | + | chr6.1:71599138-71599157 | MS.gene58912:intron | 30.0% |
! | TTTCATTCCAAAGGAGTATA+TGG | - | chr6.1:71598612-71598631 | None:intergenic | 30.0% |
!! | ATGATGATGAATGGTTTTCA+AGG | - | chr6.1:71598087-71598106 | None:intergenic | 30.0% |
!! | TGATGATGAATGGTTTTCAA+GGG | - | chr6.1:71598086-71598105 | None:intergenic | 30.0% |
!! | TTGGTTCTGTAGTTTAGATA+TGG | + | chr6.1:71599157-71599176 | MS.gene58912:intron | 30.0% |
!!! | GAAGTGTTTTTTCAATGCTT+TGG | + | chr6.1:71599010-71599029 | MS.gene58912:intron | 30.0% |
AAGGTGTAGCTCGATAATAT+GGG | - | chr6.1:71599636-71599655 | None:intergenic | 35.0% | |
ACAAAAAGTGGAGAACTTGT+TGG | + | chr6.1:71598304-71598323 | MS.gene58912:CDS | 35.0% | |
AGAAAAATGTGTGGATGGTT+TGG | + | chr6.1:71598162-71598181 | MS.gene58912:CDS | 35.0% | |
AGAAGAGAATGTAGAGGAAA+AGG | - | chr6.1:71597805-71597824 | None:intergenic | 35.0% | |
AGATGACTCAGAAAAATGTG+TGG | + | chr6.1:71598153-71598172 | MS.gene58912:CDS | 35.0% | |
AGGAAAAGGATCATGAGATA+TGG | - | chr6.1:71597791-71597810 | None:intergenic | 35.0% | |
ATATTATCGAGCTACACCTT+CGG | + | chr6.1:71599636-71599655 | MS.gene58912:intron | 35.0% | |
ATCATCATTTGACATGCCTT+TGG | + | chr6.1:71598126-71598145 | MS.gene58912:CDS | 35.0% | |
ATGTTCTTCTTCTTAGTGCA+AGG | + | chr6.1:71599403-71599422 | MS.gene58912:intron | 35.0% | |
ATTCAAGCAAAGAAGAAGAC+AGG | + | chr6.1:71599900-71599919 | MS.gene58912:CDS | 35.0% | |
CAACAAAGATTGTGAGCTAA+TGG | + | chr6.1:71599937-71599956 | MS.gene58912:CDS | 35.0% | |
CTCTCAAATGAACTCTTCAA+TGG | + | chr6.1:71597950-71597969 | MS.gene58912:CDS | 35.0% | |
GAAGAACATCCAAATTGACT+AGG | - | chr6.1:71599392-71599411 | None:intergenic | 35.0% | |
GAAGGGATTGTTAATGTTGT+TGG | - | chr6.1:71597890-71597909 | None:intergenic | 35.0% | |
GCATGTAGTTCATCAAAACA+TGG | + | chr6.1:71597983-71598002 | MS.gene58912:CDS | 35.0% | |
GTACTTACCATATACTCCTT+TGG | + | chr6.1:71598602-71598621 | MS.gene58912:intron | 35.0% | |
TCAGATGAATCAACAGCTAA+AGG | - | chr6.1:71600091-71600110 | None:intergenic | 35.0% | |
TCATGCACTCTAAATAGTGA+TGG | + | chr6.1:71600061-71600080 | MS.gene58912:CDS | 35.0% | |
TGCTTGAGTAGGAAGAAAAA+TGG | + | chr6.1:71598358-71598377 | MS.gene58912:CDS | 35.0% | |
TGTTGGGAAAATGGGATTAA+GGG | - | chr6.1:71597873-71597892 | None:intergenic | 35.0% | |
TTGTTGGGAAAATGGGATTA+AGG | - | chr6.1:71597874-71597893 | None:intergenic | 35.0% | |
! | AAGAAAGAGACAAAGTTGGT+TGG | - | chr6.1:71600144-71600163 | None:intergenic | 35.0% |
! | ACACATTTTTCTGAGTCATC+TGG | - | chr6.1:71598154-71598173 | None:intergenic | 35.0% |
! | AGCTTGTTTGTGAGAGTTTA+TGG | + | chr6.1:71598764-71598783 | MS.gene58912:intron | 35.0% |
! | CTATTTAGAGTGCATGATTG+TGG | - | chr6.1:71600058-71600077 | None:intergenic | 35.0% |
! | GATCTGGTGTATTGTTATTG+TGG | + | chr6.1:71598238-71598257 | MS.gene58912:CDS | 35.0% |
AAGCTATGCTAGAGACCTTA+TGG | - | chr6.1:71598832-71598851 | None:intergenic | 40.0% | |
AAGGGAAGAAGAGAATGTAG+AGG | - | chr6.1:71597811-71597830 | None:intergenic | 40.0% | |
ACCAGATCACAACTCTCATT+TGG | - | chr6.1:71598226-71598245 | None:intergenic | 40.0% | |
AGGATCATGAGATATGGAAG+TGG | - | chr6.1:71597785-71597804 | None:intergenic | 40.0% | |
CACATGCAATGTCACTATCT+TGG | + | chr6.1:71599118-71599137 | MS.gene58912:intron | 40.0% | |
GACTCAGAAAAATGTGTGGA+TGG | + | chr6.1:71598157-71598176 | MS.gene58912:CDS | 40.0% | |
GATGAAGATTGGACTCTGTT+TGG | + | chr6.1:71598547-71598566 | MS.gene58912:intron | 40.0% | |
GTAGCTCGATAATATGGGTT+AGG | - | chr6.1:71599631-71599650 | None:intergenic | 40.0% | |
TATAACCATGCTGCAAGAAC+AGG | - | chr6.1:71598043-71598062 | None:intergenic | 40.0% | |
TGGAGAAGAATTGCTTGAGT+AGG | + | chr6.1:71598347-71598366 | MS.gene58912:CDS | 40.0% | |
TTCCGGAGTAAGTGTTTCAT+GGG | + | chr6.1:71598701-71598720 | MS.gene58912:intron | 40.0% | |
TTTCCGGAGTAAGTGTTTCA+TGG | + | chr6.1:71598700-71598719 | MS.gene58912:intron | 40.0% | |
! | AATGGATTTCAAGGTCTTGG+AGG | + | chr6.1:71598382-71598401 | MS.gene58912:CDS | 40.0% |
! | AGACAAAGTTGGTTGGAGTT+TGG | - | chr6.1:71600137-71600156 | None:intergenic | 40.0% |
! | ATGTGTGGATGGTTTGGAAA+AGG | + | chr6.1:71598168-71598187 | MS.gene58912:CDS | 40.0% |
! | GAAGGTGTAGCTCGATAATA+TGG | - | chr6.1:71599637-71599656 | None:intergenic | 40.0% |
!! | AGATGGAAGTGTTAGAAGGT+TGG | + | chr6.1:71598327-71598346 | MS.gene58912:CDS | 40.0% |
!! | AGGGTTGATGATGTTGAGTT+TGG | - | chr6.1:71597854-71597873 | None:intergenic | 40.0% |
!! | GAAAAGGCTTTGAAAGTGAG+AGG | + | chr6.1:71598184-71598203 | MS.gene58912:CDS | 40.0% |
!! | GGTAATGGATTTCAAGGTCT+TGG | + | chr6.1:71598379-71598398 | MS.gene58912:CDS | 40.0% |
!! | GGTTAATTTGTTAGAGCGAG+AGG | + | chr6.1:71599547-71599566 | MS.gene58912:intron | 40.0% |
!! | TTGGAGATGGAAGTGTTAGA+AGG | + | chr6.1:71598323-71598342 | MS.gene58912:CDS | 40.0% |
AGCCCATGAAACACTTACTC+CGG | - | chr6.1:71598706-71598725 | None:intergenic | 45.0% | |
CATGGCTTCTGTCGAAGAAT+CGG | + | chr6.1:71599966-71599985 | MS.gene58912:CDS | 45.0% | |
CTGCAAGAACAGGACAACAT+CGG | - | chr6.1:71598033-71598052 | None:intergenic | 45.0% | |
GAGTGAGACTCATGTAGGAA+GGG | - | chr6.1:71597829-71597848 | None:intergenic | 45.0% | |
GCCAAATGAGAGTTGTGATC+TGG | + | chr6.1:71598222-71598241 | MS.gene58912:CDS | 45.0% | |
GTGACAAAATGTGTGTCCGA+AGG | - | chr6.1:71599655-71599674 | None:intergenic | 45.0% | |
TCGGACGGCTTATATTCACA+TGG | + | chr6.1:71599985-71600004 | MS.gene58912:CDS | 45.0% | |
TCTGAGTCATCTGGTACCAA+AGG | - | chr6.1:71598145-71598164 | None:intergenic | 45.0% | |
TGAGTGAGACTCATGTAGGA+AGG | - | chr6.1:71597830-71597849 | None:intergenic | 45.0% | |
TGGATGAGTGAGACTCATGT+AGG | - | chr6.1:71597834-71597853 | None:intergenic | 45.0% | |
! | ACGACGACGATGATGATGAA+TGG | - | chr6.1:71598096-71598115 | None:intergenic | 45.0% |
!! | AGTGGAGAACTTGTTGGAGA+TGG | + | chr6.1:71598310-71598329 | MS.gene58912:CDS | 45.0% |
!! | GCTTTGCTGTTGAACAAAGG+TGG | + | chr6.1:71600025-71600044 | MS.gene58912:CDS | 45.0% |
!! | TGAATGGTTTTCAAGGGCAG+TGG | - | chr6.1:71598080-71598099 | None:intergenic | 45.0% |
GCTTCTGTCGAAGAATCGGA+CGG | + | chr6.1:71599970-71599989 | MS.gene58912:CDS | 50.0% | |
GTTGTCCTGTTCTTGCAGCA+TGG | + | chr6.1:71598035-71598054 | MS.gene58912:CDS | 50.0% | |
! | GAACAGGACAACATCGGCTA+CGG | - | chr6.1:71598027-71598046 | None:intergenic | 50.0% |
!! | ATGGTTTTCAAGGGCAGTGG+AGG | - | chr6.1:71598077-71598096 | None:intergenic | 50.0% |
!! | CGCGCTTTGCTGTTGAACAA+AGG | + | chr6.1:71600022-71600041 | MS.gene58912:CDS | 50.0% |
!! | GTGAGCTAATGGGCTTGACA+TGG | + | chr6.1:71599948-71599967 | MS.gene58912:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6.1 | gene | 71597767 | 71600219 | 71597767 | ID=MS.gene58912 |
chr6.1 | mRNA | 71597767 | 71600219 | 71597767 | ID=MS.gene58912.t1;Parent=MS.gene58912 |
chr6.1 | exon | 71597767 | 71598435 | 71597767 | ID=MS.gene58912.t1.exon1;Parent=MS.gene58912.t1 |
chr6.1 | CDS | 71597767 | 71598435 | 71597767 | ID=cds.MS.gene58912.t1;Parent=MS.gene58912.t1 |
chr6.1 | exon | 71599881 | 71600219 | 71599881 | ID=MS.gene58912.t1.exon2;Parent=MS.gene58912.t1 |
chr6.1 | CDS | 71599881 | 71600219 | 71599881 | ID=cds.MS.gene58912.t1;Parent=MS.gene58912.t1 |
Gene Sequence |
Protein sequence |