AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene055428


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055428.t1 MTR_8g007375 97.052 407 12 0 50 456 1 407 0.0 815
MS.gene055428.t1 MTR_8g031520 98.404 188 3 0 1 188 113 300 1.21e-133 387
MS.gene055428.t1 MTR_8g031510 95.977 174 7 0 283 456 1 174 1.50e-118 344
MS.gene055428.t1 MTR_8g069570 32.373 451 296 4 5 448 36 484 3.04e-81 259
MS.gene055428.t1 MTR_1g072300 34.928 418 262 6 4 416 48 460 3.41e-81 260
MS.gene055428.t1 MTR_1g086820 35.349 430 271 5 9 437 48 471 3.12e-77 249
MS.gene055428.t1 MTR_2g025330 61.576 203 43 4 187 389 80 247 7.70e-74 233
MS.gene055428.t1 MTR_2g025330 46.094 128 56 2 45 170 20 136 4.29e-27 109
MS.gene055428.t1 MTR_2g090290 33.255 427 273 6 3 421 43 465 1.05e-71 234
MS.gene055428.t1 MTR_3g099753 29.083 447 304 5 11 448 56 498 4.21e-70 231
MS.gene055428.t1 MTR_3g099753 28.829 444 309 3 11 448 80 522 4.70e-70 231
MS.gene055428.t1 MTR_2g047855 33.021 427 280 6 3 427 42 464 5.75e-70 230
MS.gene055428.t1 MTR_8g465890 32.471 425 275 7 3 421 38 456 8.48e-68 224
MS.gene055428.t1 MTR_2g013450 31.127 408 279 2 1 407 37 443 5.41e-65 217
MS.gene055428.t1 MTR_8g059115 32.507 363 243 2 59 420 9 370 2.21e-62 208
MS.gene055428.t1 MTR_1g022400 28.239 301 214 2 4 303 66 365 1.06e-41 153
MS.gene055428.t1 MTR_1g050750 25.436 401 289 7 10 410 108 498 8.42e-30 122
MS.gene055428.t1 MTR_7g089770 25.622 402 287 8 10 410 174 564 7.95e-29 120
MS.gene055428.t1 MTR_2g096880 22.494 409 303 6 9 410 60 461 1.16e-27 115
MS.gene055428.t1 MTR_8g007365 97.826 46 1 0 1 46 86 131 3.62e-25 100
MS.gene055428.t1 MTR_1g045880 21.543 311 232 3 56 359 211 516 1.75e-18 88.6
MS.gene055428.t1 MTR_1g045880 21.951 410 271 11 38 441 159 525 1.12e-11 67.4
MS.gene055428.t1 MTR_3g114700 20.263 380 288 7 36 410 155 524 2.56e-16 81.6
MS.gene055428.t1 MTR_3g053350 22.324 327 245 6 26 346 170 493 2.83e-16 82.0
MS.gene055428.t1 MTR_3g053350 23.774 265 161 10 90 331 582 828 6.87e-12 68.2
MS.gene055428.t1 MTR_3g053350 22.581 341 240 8 91 421 344 670 7.16e-11 65.1
MS.gene055428.t1 MTR_4g107210 26.172 256 179 5 96 346 175 425 3.40e-16 81.6
MS.gene055428.t1 MTR_1g095880 23.754 341 246 7 96 428 175 509 3.68e-16 81.6
MS.gene055428.t1 MTR_8g054410 28.502 207 147 1 155 361 203 408 4.77e-16 81.3
MS.gene055428.t1 MTR_8g054410 21.852 270 210 1 96 365 214 482 1.48e-12 70.1
MS.gene055428.t1 MTR_8g080940 20.365 329 225 6 72 364 674 1001 6.18e-15 77.8
MS.gene055428.t1 MTR_8g080940 20.365 329 225 6 72 364 472 799 8.80e-15 77.4
MS.gene055428.t1 MTR_5g090210 21.472 326 251 2 91 416 410 730 8.81e-15 77.4
MS.gene055428.t1 MTR_5g090210 21.751 377 283 4 27 401 174 540 2.15e-12 69.7
MS.gene055428.t1 MTR_2g026635 20.217 277 217 3 93 366 218 493 1.40e-14 76.6
MS.gene055428.t1 MTR_2g026635 22.353 255 196 2 111 364 130 383 5.66e-11 65.1
MS.gene055428.t1 MTR_7g017570 22.319 345 241 7 65 406 367 687 1.58e-14 76.6
MS.gene055428.t1 MTR_7g017570 25.896 251 146 5 130 343 320 567 1.01e-11 67.8
MS.gene055428.t1 MTR_5g095130 19.943 351 274 4 16 364 406 751 1.65e-14 76.6
MS.gene055428.t1 MTR_5g095130 23.600 250 177 5 112 359 579 816 3.55e-13 72.4
MS.gene055428.t1 MTR_5g095130 22.145 289 208 8 96 375 205 485 2.08e-11 66.6
MS.gene055428.t1 MTR_3g091500 22.420 281 210 3 151 431 287 559 9.18e-14 73.9
MS.gene055428.t1 MTR_4g068360 22.727 264 200 2 96 359 324 583 2.26e-13 72.8
MS.gene055428.t1 MTR_4g108060 20.489 327 247 6 96 416 103 422 2.48e-13 72.0
MS.gene055428.t1 MTR_4g074390 20.489 327 247 6 96 416 237 556 4.57e-13 71.6
MS.gene055428.t1 MTR_4g108060 20.489 327 247 6 96 416 237 556 4.95e-13 71.6
MS.gene055428.t1 MTR_2g036560 20.192 312 241 6 41 346 180 489 1.18e-12 70.5
MS.gene055428.t1 MTR_2g036560 22.823 333 243 8 93 420 377 700 8.32e-12 67.8
MS.gene055428.t1 MTR_2g036560 22.667 300 214 6 71 365 537 823 2.01e-11 66.6
MS.gene055428.t1 MTR_8g107050 21.307 352 267 5 97 445 198 542 1.37e-12 70.5
MS.gene055428.t1 MTR_8g107050 21.307 352 267 5 97 445 198 542 1.95e-12 69.7
MS.gene055428.t1 MTR_7g405940 22.152 316 234 7 96 407 270 577 2.02e-12 69.7
MS.gene055428.t1 MTR_5g008300 20.238 420 317 8 22 432 193 603 3.39e-12 69.3
MS.gene055428.t1 MTR_8g039270 24.107 336 212 7 96 430 202 495 3.62e-12 68.9
MS.gene055428.t1 MTR_3g105900 23.588 301 219 6 65 359 274 569 3.87e-12 69.3
MS.gene055428.t1 MTR_4g098660 24.444 315 211 7 88 393 254 550 4.11e-12 68.9
MS.gene055428.t1 MTR_7g090340 22.327 318 230 6 97 407 153 460 5.19e-12 68.2
MS.gene055428.t1 MTR_7g066990 20.545 404 312 5 30 430 87 484 5.46e-12 68.6
MS.gene055428.t1 MTR_2g102210 23.077 312 232 5 112 420 178 484 6.19e-12 68.2
MS.gene055428.t1 MTR_7g017530 23.214 280 203 4 66 343 263 532 6.69e-12 68.2
MS.gene055428.t1 MTR_8g091670 22.193 374 230 10 17 339 73 436 8.20e-12 67.4
MS.gene055428.t1 MTR_7g007400 21.975 314 237 5 96 407 252 559 9.49e-12 67.4
MS.gene055428.t1 MTR_5g006640 21.407 327 243 6 27 347 206 524 1.02e-11 67.4
MS.gene055428.t1 MTR_5g006640 22.807 285 214 3 92 372 236 518 6.91e-11 64.7
MS.gene055428.t1 MTR_8g071970 20.074 269 210 3 93 359 490 755 1.29e-11 67.4
MS.gene055428.t1 MTR_1g033960 19.461 334 259 5 91 421 226 552 1.33e-11 67.4
MS.gene055428.t1 MTR_6g022260 19.429 350 272 3 91 440 231 570 1.41e-11 67.0
MS.gene055428.t1 MTR_8g098755 21.587 315 233 5 41 348 332 639 1.43e-11 67.0
MS.gene055428.t1 MTR_8g098755 22.527 364 263 8 96 445 239 597 2.91e-11 66.2
MS.gene055428.t1 MTR_1g048080 26.380 163 117 2 83 243 675 836 2.62e-11 66.6
MS.gene055428.t1 MTR_1g112240 20.938 320 244 6 21 335 97 412 3.36e-11 65.9
MS.gene055428.t1 MTR_7g076550 21.409 369 272 10 6 365 157 516 4.10e-11 65.5
MS.gene055428.t1 MTR_6g471100 21.053 323 249 3 96 417 245 562 4.17e-11 65.9
MS.gene055428.t1 MTR_8g064830 24.219 256 188 4 93 346 594 845 5.41e-11 65.5
MS.gene055428.t1 MTR_1g080110 22.930 314 225 7 133 437 79 384 5.92e-11 65.1
MS.gene055428.t1 MTR_4g075270 24.380 242 168 6 125 359 354 587 6.00e-11 65.1
MS.gene055428.t1 MTR_2g103520 21.930 342 253 7 85 421 266 598 7.44e-11 65.1
MS.gene055428.t1 MTR_2g437460 24.901 253 176 6 94 335 239 488 7.70e-11 64.7
MS.gene055428.t1 MTR_2g018550 20.579 311 242 2 111 420 284 590 9.26e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene055428.t1 AT1G02150 60.398 452 172 2 1 452 76 520 0.0 578
MS.gene055428.t1 AT1G60770 32.997 397 262 2 12 406 43 437 1.55e-77 250
MS.gene055428.t1 AT4G02820 31.951 410 274 4 11 420 80 484 3.59e-75 245
MS.gene055428.t1 AT4G01990 34.146 410 267 2 11 420 59 465 4.47e-73 239
MS.gene055428.t1 AT2G20710 33.985 409 266 4 3 410 49 454 4.37e-72 236
MS.gene055428.t1 AT1G02370 34.815 405 249 6 9 405 88 485 6.16e-71 234
MS.gene055428.t1 AT5G27460 31.163 430 291 2 3 428 49 477 1.44e-69 229
MS.gene055428.t1 AT4G21705 29.978 447 304 5 12 451 45 489 2.03e-65 218
MS.gene055428.t1 AT2G20710 34.561 353 228 3 59 410 9 359 3.55e-63 209
MS.gene055428.t1 AT5G09450 31.864 295 198 3 4 296 67 360 9.23e-50 175
MS.gene055428.t1 AT1G28020 33.544 316 207 3 11 324 55 369 2.84e-45 164
MS.gene055428.t1 AT1G80270 27.493 371 261 5 4 373 140 503 1.01e-36 142
MS.gene055428.t1 AT1G80270 27.493 371 261 5 4 373 140 503 1.01e-36 142
MS.gene055428.t1 AT1G80270 27.493 371 261 5 4 373 140 503 1.01e-36 142
MS.gene055428.t1 AT1G80270 27.493 371 261 5 4 373 140 503 1.01e-36 142
MS.gene055428.t1 AT1G80270 27.493 371 261 5 4 373 140 503 1.01e-36 142
MS.gene055428.t1 AT1G15480 25.829 422 291 9 6 420 140 546 1.32e-33 134
MS.gene055428.t1 AT1G07590 23.587 407 303 5 9 411 82 484 4.05e-27 114
MS.gene055428.t1 AT3G11380 30.945 307 161 10 30 324 81 348 1.94e-25 109
MS.gene055428.t1 AT3G11380 30.899 178 120 3 11 186 365 541 6.57e-15 77.4
MS.gene055428.t1 AT3G15590 26.420 405 279 9 11 410 160 550 2.09e-25 109
MS.gene055428.t1 AT3G15590 26.420 405 279 9 11 410 160 550 2.09e-25 109
MS.gene055428.t1 AT5G02860 24.848 330 239 6 23 346 134 460 6.97e-19 90.1
MS.gene055428.t1 AT5G02860 24.074 324 235 4 93 413 313 628 1.59e-16 82.8
MS.gene055428.t1 AT5G02860 24.848 330 239 6 23 346 134 460 6.97e-19 90.1
MS.gene055428.t1 AT5G02860 24.074 324 235 4 93 413 313 628 1.59e-16 82.8
MS.gene055428.t1 AT5G02860 24.848 330 239 6 23 346 134 460 6.97e-19 90.1
MS.gene055428.t1 AT5G02860 24.074 324 235 4 93 413 313 628 1.59e-16 82.8
MS.gene055428.t1 AT5G02860 24.848 330 239 6 23 346 134 460 6.97e-19 90.1
MS.gene055428.t1 AT5G02860 24.074 324 235 4 93 413 313 628 1.59e-16 82.8
MS.gene055428.t1 AT5G02860 24.848 330 239 6 23 346 134 460 6.97e-19 90.1
MS.gene055428.t1 AT5G02860 24.074 324 235 4 93 413 313 628 1.59e-16 82.8
MS.gene055428.t1 AT1G28000 26.800 250 178 5 12 257 53 301 1.06e-18 88.2
MS.gene055428.t1 AT3G18110 22.802 364 267 8 21 375 153 511 2.12e-15 79.7
MS.gene055428.t1 AT1G74580 23.353 334 231 8 87 408 413 733 2.30e-15 79.3
MS.gene055428.t1 AT1G74580 23.353 334 231 8 87 408 413 733 2.30e-15 79.3
MS.gene055428.t1 AT1G74580 23.353 334 231 8 87 408 413 733 2.30e-15 79.3
MS.gene055428.t1 AT1G03560 23.792 269 203 2 93 360 256 523 2.39e-15 79.0
MS.gene055428.t1 AT4G30825 23.077 338 229 10 43 365 542 863 3.55e-15 78.6
MS.gene055428.t1 AT5G01110 21.034 290 212 6 135 421 425 700 1.23e-14 77.0
MS.gene055428.t1 AT5G01110 21.289 357 266 6 15 365 158 505 1.53e-11 67.0
MS.gene055428.t1 AT5G01110 21.034 290 212 6 135 421 453 728 1.63e-14 76.6
MS.gene055428.t1 AT5G01110 21.289 357 266 6 15 365 186 533 1.79e-11 67.0
MS.gene055428.t1 AT1G30290 21.408 341 258 4 101 435 284 620 2.84e-14 75.9
MS.gene055428.t1 AT1G30290 21.408 341 258 4 101 435 284 620 2.90e-14 75.9
MS.gene055428.t1 AT3G06920 19.355 496 320 9 10 434 189 675 3.49e-14 75.5
MS.gene055428.t1 AT3G06920 19.355 496 320 9 10 434 203 689 4.27e-14 75.1
MS.gene055428.t1 AT3G06920 19.355 496 320 9 10 434 203 689 4.27e-14 75.1
MS.gene055428.t1 AT2G18940 22.910 323 240 5 93 413 350 665 7.91e-14 74.3
MS.gene055428.t1 AT2G31400 22.050 322 210 9 96 406 411 702 2.64e-13 72.8
MS.gene055428.t1 AT2G31400 20.293 409 317 5 30 434 202 605 2.50e-12 69.7
MS.gene055428.t1 AT1G63150 24.354 271 198 5 93 360 152 418 2.69e-13 72.4
MS.gene055428.t1 AT1G63150 24.354 271 198 5 93 360 152 418 2.69e-13 72.4
MS.gene055428.t1 AT2G31400 22.050 322 210 9 96 406 411 702 3.13e-13 72.4
MS.gene055428.t1 AT2G31400 20.293 409 317 5 30 434 202 605 2.73e-12 69.7
MS.gene055428.t1 AT2G32630 19.294 425 298 7 35 421 200 617 4.08e-13 72.0
MS.gene055428.t1 AT5G46580 22.615 283 214 4 88 366 250 531 6.00e-13 71.6
MS.gene055428.t1 AT5G65560 23.396 265 199 4 96 359 395 656 7.08e-13 71.6
MS.gene055428.t1 AT5G65560 23.396 265 199 4 96 359 395 656 7.08e-13 71.6
MS.gene055428.t1 AT5G65560 23.396 265 199 4 96 359 395 656 7.08e-13 71.6
MS.gene055428.t1 AT1G43010 28.571 217 134 6 11 220 55 257 1.16e-12 68.2
MS.gene055428.t1 AT1G63230 21.118 322 240 6 93 411 9 319 1.42e-12 68.9
MS.gene055428.t1 AT3G22670 19.288 337 258 6 18 346 197 527 1.67e-12 69.7
MS.gene055428.t1 AT5G25630 27.072 181 125 4 93 271 208 383 2.71e-12 69.3
MS.gene055428.t1 AT5G25630 27.072 181 125 4 93 271 259 434 2.99e-12 68.9
MS.gene055428.t1 AT2G35030 19.849 398 272 12 29 414 4 366 4.58e-12 68.6
MS.gene055428.t1 AT1G74900 22.096 353 256 9 23 365 52 395 4.64e-12 68.2
MS.gene055428.t1 AT1G62590 23.671 414 287 11 30 431 231 627 5.36e-12 68.6
MS.gene055428.t1 AT1G62590 23.671 414 287 11 30 431 231 627 5.36e-12 68.6
MS.gene055428.t1 AT1G20300 19.938 321 235 5 36 346 163 471 5.39e-12 68.2
MS.gene055428.t1 AT1G51965 21.322 469 295 15 22 430 113 567 7.43e-12 68.2
MS.gene055428.t1 AT1G10910 19.597 347 238 5 44 353 118 460 1.04e-11 67.4
MS.gene055428.t1 AT5G04810 26.344 186 134 2 72 255 670 854 1.21e-11 67.4
MS.gene055428.t1 AT5G42310 22.699 326 237 7 93 413 373 688 1.26e-11 67.4
MS.gene055428.t1 AT1G10910 19.597 347 238 5 44 353 118 460 1.28e-11 67.0
MS.gene055428.t1 AT1G63330 23.188 345 242 8 96 431 222 552 1.33e-11 67.0
MS.gene055428.t1 AT1G63330 23.188 345 242 8 96 431 222 552 1.33e-11 67.0
MS.gene055428.t1 AT1G63330 23.188 345 242 8 96 431 222 552 1.33e-11 67.0
MS.gene055428.t1 AT2G15630 21.591 264 203 2 96 359 262 521 1.44e-11 67.0
MS.gene055428.t1 AT5G16640 21.958 337 252 6 29 360 86 416 2.61e-11 65.9
MS.gene055428.t1 AT5G48730 24.354 271 193 6 63 324 149 416 2.75e-11 65.9
MS.gene055428.t1 AT1G62670 22.727 352 224 10 96 408 153 495 2.91e-11 66.2
MS.gene055428.t1 AT1G62670 22.727 352 224 10 96 408 153 495 2.91e-11 66.2
MS.gene055428.t1 AT1G62910 21.324 408 304 7 30 431 229 625 3.44e-11 65.9
MS.gene055428.t1 AT4G20090 21.569 357 266 7 40 389 164 513 4.18e-11 65.5
MS.gene055428.t1 AT4G20090 22.167 203 157 1 96 298 329 530 6.82e-11 65.1
MS.gene055428.t1 AT4G20090 21.569 357 266 7 40 389 164 513 4.18e-11 65.5
MS.gene055428.t1 AT4G20090 22.167 203 157 1 96 298 329 530 6.82e-11 65.1
MS.gene055428.t1 AT1G63070 19.944 356 269 6 85 431 235 583 4.72e-11 65.5
MS.gene055428.t1 AT4G39620 22.289 332 241 10 30 350 103 428 5.53e-11 65.1
MS.gene055428.t1 AT5G61990 20.611 262 198 5 91 346 554 811 5.65e-11 65.5
MS.gene055428.t1 AT4G39620 22.289 332 241 10 30 350 103 428 5.99e-11 65.1
MS.gene055428.t1 AT4G28010 21.036 309 237 4 100 407 78 380 9.35e-11 64.7

Find 89 sgRNAs with CRISPR-Local

Find 219 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCTCCCATGTAGTCGAATT+TGG 0.237732 8.1:+86286104 None:intergenic
ATCCTACCATTATTCCTAAT+TGG 0.237984 8.1:-86286538 MS.gene055428:CDS
CGACTTTATCATAATCCTTA+AGG 0.296327 8.1:+86286693 None:intergenic
TCGAAGTAATGAGGAGTAAA+AGG 0.304308 8.1:-86286766 MS.gene055428:CDS
TTCTGAGGCGCTTTCGTGCT+TGG 0.317772 8.1:-86286048 MS.gene055428:CDS
GTACTAAATGTACTCCAATT+AGG 0.322076 8.1:+86286524 None:intergenic
GAAACCCAAGCCAATAAAAT+TGG 0.333547 8.1:-86285991 MS.gene055428:CDS
AAAACATGATAGAGCTCTTC+AGG 0.338362 8.1:-86288671 MS.gene055428:intron
TGTACTCCAATTAGGAATAA+TGG 0.340858 8.1:+86286532 None:intergenic
GATGATGGAGAATCCTGAAT+TGG 0.341809 8.1:-86288788 None:intergenic
CATTATCTCCTGAGTTTGTA+TGG 0.359485 8.1:-86286401 MS.gene055428:CDS
CTGCTTCTGTGTTGAATCAA+TGG 0.369186 8.1:-86288762 MS.gene055428:CDS
AAGGCCGAGGGTAGAATATT+AGG 0.374501 8.1:-86286443 MS.gene055428:CDS
CTTCGTCTTGACAAAGCTTA+AGG 0.376933 8.1:+86285961 None:intergenic
ATTGAGTTGTTGAAGAAGTC+GGG 0.392725 8.1:-86285912 MS.gene055428:CDS
TATTTCTTCTCTCGTAAGAA+TGG 0.397940 8.1:-86286288 MS.gene055428:CDS
GGGTCATATTGCTGAAAATA+GGG 0.397978 8.1:-86286072 MS.gene055428:CDS
ATATATATACATATAATATC+TGG 0.400262 8.1:-86286628 MS.gene055428:CDS
AGGGTCATATTGCTGAAAAT+AGG 0.400702 8.1:-86286073 MS.gene055428:CDS
CCCTCTGATGATTCTAGAAT+AGG 0.408766 8.1:-86286215 MS.gene055428:CDS
CCGCATACGCTTCGTCGTTA+TGG 0.412804 8.1:+86285886 None:intergenic
AACTCTGCAAAGTTCCCATT+TGG 0.415800 8.1:+86288717 None:intergenic
CAGAAAAGCTTTACGAGGAA+TGG 0.415843 8.1:-86286250 MS.gene055428:CDS
GTTTCCAAGTATACCTAACT+TGG 0.418407 8.1:-86286324 MS.gene055428:CDS
AAGGAAGGAATCTCACCAAA+TGG 0.426265 8.1:-86288732 MS.gene055428:CDS
ACAGCATGGTATCCCAAGTT+AGG 0.429036 8.1:+86286311 None:intergenic
TTAAAAGACAAGAGAACATA+TGG 0.437458 8.1:-86286845 MS.gene055428:CDS
AATTGAGTTGTTGAAGAAGT+CGG 0.440073 8.1:-86285913 MS.gene055428:CDS
ATTCTTTCAATCCTGTTTGA+CGG 0.440996 8.1:+86285843 None:intergenic
ACGAGGAATGGGTTTCTGTA+AGG 0.443573 8.1:-86286238 MS.gene055428:CDS
TGCTTCTGTGTTGAATCAAT+GGG 0.447177 8.1:-86288761 MS.gene055428:CDS
GCAAAGATGAACCGTCAAAC+AGG 0.449173 8.1:-86285854 MS.gene055428:CDS
CGACAAGTGATTCAAAGAGT+TGG 0.450702 8.1:-86286013 MS.gene055428:CDS
AGAGTCATCATTAAATTAAA+CGG 0.454778 8.1:+86286725 None:intergenic
CGTAAGAATGGACGATATTG+AGG 0.465330 8.1:-86286276 MS.gene055428:CDS
AGAAAAGCTTTACGAGGAAT+GGG 0.471834 8.1:-86286249 MS.gene055428:CDS
TCAAGGATCAATAGAGAAGA+TGG 0.473452 8.1:-86286588 MS.gene055428:CDS
ACAGAAGCAGAACCCAATTC+AGG 0.475894 8.1:+86288775 None:intergenic
TATCCCAAGTTAGGTATACT+TGG 0.477102 8.1:+86286320 None:intergenic
GGCTGCAATGTATATTAAGA+TGG 0.477129 8.1:-86286498 MS.gene055428:CDS
GATCTAATCGCAAGAGTTCA+CGG 0.482500 8.1:-86286911 MS.gene055428:CDS
GACTCTGTACATGAACCTTA+AGG 0.486004 8.1:-86286708 MS.gene055428:CDS
ATGATGGAGAATCCTGAATT+GGG 0.490611 8.1:-86288787 MS.gene055428:CDS
AATATCTGGTTGTCCTCTTG+TGG 0.497939 8.1:-86286614 MS.gene055428:CDS
ATAAGCTGGTATCTTAAGAA+AGG 0.498356 8.1:-86286182 MS.gene055428:CDS
TTATGATAAAGTCGATATGT+TGG 0.499930 8.1:-86286684 MS.gene055428:CDS
GCAGATATTCTAAACCTCTC+TGG 0.506381 8.1:+86286956 None:intergenic
TTGTCCTCTTGTGGATCTCA+AGG 0.509360 8.1:-86286605 MS.gene055428:CDS
TAGGAAACCTTCTCATAAGC+TGG 0.515507 8.1:-86286196 MS.gene055428:CDS
CACGGAGTTTCTAGTGCAGA+AGG 0.519926 8.1:-86286893 MS.gene055428:CDS
ATCAAAAGCTACTATCTACT+TGG 0.530755 8.1:+86285766 None:intergenic
TACATGGGAGCTTCTTTCTG+AGG 0.536998 8.1:-86286093 MS.gene055428:CDS
GATGTCCAAATTCGACTACA+TGG 0.539568 8.1:-86286109 MS.gene055428:CDS
CAACACTTCCATACAAACTC+AGG 0.539796 8.1:+86286393 None:intergenic
CTGAGTTTGTATGGAAGTGT+TGG 0.541520 8.1:-86286392 MS.gene055428:CDS
AGGAAGGAATCTCACCAAAT+GGG 0.547368 8.1:-86288731 MS.gene055428:CDS
TTCTTTAAGCATATGAGTGA+AGG 0.550405 8.1:-86286137 MS.gene055428:CDS
TGCTGAAAATAGGGTTTCTG+AGG 0.551041 8.1:-86286063 MS.gene055428:CDS
AGGACGAAGTTTACCGCGTG+TGG 0.552160 8.1:-86286364 MS.gene055428:CDS
GTAAGAATGGACGATATTGA+GGG 0.554710 8.1:-86286275 MS.gene055428:CDS
GTATGGAAGTGTTGGAAACA+AGG 0.554809 8.1:-86286384 MS.gene055428:CDS
ATCAATGGGAGAATGAAGGA+AGG 0.564566 8.1:-86288747 MS.gene055428:CDS
AAACTCAGGAGATAATGAAA+AGG 0.565979 8.1:+86286407 None:intergenic
TCGACCTAATATTCTACCCT+CGG 0.566861 8.1:+86286439 None:intergenic
AATCTTTACTCGAAGTAATG+AGG 0.567840 8.1:-86286775 MS.gene055428:CDS
TCATTCTAGATCAAGAGAAA+AGG 0.571003 8.1:-86286801 MS.gene055428:CDS
CAACAACTCAATTAAAACCT+CGG 0.574815 8.1:+86285923 None:intergenic
TAAGATACCAGCTTATGAGA+AGG 0.579937 8.1:+86286189 None:intergenic
TTGGAGTACATTTAGTACAA+TGG 0.583230 8.1:-86286519 MS.gene055428:CDS
TTTCCAAGTATACCTAACTT+GGG 0.589423 8.1:-86286323 MS.gene055428:CDS
TTTAAGCATATGAGTGAAGG+TGG 0.593303 8.1:-86286134 MS.gene055428:CDS
CCATAACGACGAAGCGTATG+CGG 0.593758 8.1:-86285886 MS.gene055428:CDS
TTGTCAAGACGAAGACGACA+TGG 0.595912 8.1:-86285952 MS.gene055428:CDS
ACATGGGAGCTTCTTTCTGA+GGG 0.601564 8.1:-86286092 MS.gene055428:CDS
AATGAACATATGCATTCAAG+AGG 0.604245 8.1:+86286819 None:intergenic
TCCTATTCTAGAATCATCAG+AGG 0.618071 8.1:+86286214 None:intergenic
TTGAATCAATGGGAGAATGA+AGG 0.623335 8.1:-86288751 MS.gene055428:CDS
CCTATTCTAGAATCATCAGA+GGG 0.647606 8.1:+86286215 None:intergenic
ATGAACATATGCATTCAAGA+GGG 0.654487 8.1:+86286820 None:intergenic
AAGCATATGAGTGAAGGTGG+TGG 0.657423 8.1:-86286131 MS.gene055428:CDS
ATGTCCAAATTCGACTACAT+GGG 0.669288 8.1:-86286108 MS.gene055428:CDS
TGATCCTTGAGATCCACAAG+AGG 0.674298 8.1:+86286601 None:intergenic
CGAGAGAAGAAATAACAGCA+TGG 0.674858 8.1:+86286297 None:intergenic
CTCCAATTAGGAATAATGGT+AGG 0.679561 8.1:+86286536 None:intergenic
TAAGAATGGACGATATTGAG+GGG 0.688947 8.1:-86286274 MS.gene055428:CDS
AAGAATGGACGATATTGAGG+GGG 0.691386 8.1:-86286273 MS.gene055428:CDS
ATTTATAGTTATTCCACACG+CGG 0.697764 8.1:+86286351 None:intergenic
AGACGACATGGAGAGCGCCG+AGG 0.711199 8.1:-86285940 MS.gene055428:CDS
GGATGAACAATAGACCAGAG+AGG 0.722678 8.1:-86286970 MS.gene055428:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATACATATAATATC+TGG - chr8.1:86287923-86287942 MS.gene055428:intron 10.0%
!! AAAAAATTTATATCAGTTTG+AGG + chr8.1:86287135-86287154 None:intergenic 15.0%
!! ACACACAAAAAAAAAAAAAA+AGG - chr8.1:86286704-86286723 MS.gene055428:CDS 15.0%
!! TCATTATATGTTATTCTATA+TGG - chr8.1:86285919-86285938 MS.gene055428:CDS 15.0%
!! AAACACAAAATATGATTGAA+AGG + chr8.1:86286881-86286900 None:intergenic 20.0%
!! AGAGTCATCATTAAATTAAA+CGG + chr8.1:86287829-86287848 None:intergenic 20.0%
!! GTAGTAAAAGAAATACATAA+CGG - chr8.1:86287102-86287121 MS.gene055428:intron 20.0%
!! TGATATTAAGACATTATTTG+AGG + chr8.1:86287503-86287522 None:intergenic 20.0%
!! TTTGGAGATAGAAATTATTA+AGG + chr8.1:86286853-86286872 None:intergenic 20.0%
!!! AAGAATTGTGTTTTTTAATC+AGG + chr8.1:86286482-86286501 None:intergenic 20.0%
!!! AGGAAATTTTCAATATATTC+AGG + chr8.1:86287275-86287294 None:intergenic 20.0%
!!! GGAAATTTTCAATATATTCA+GGG + chr8.1:86287274-86287293 None:intergenic 20.0%
!!! GTTAAAGGTTTTTGATTTTT+TGG + chr8.1:86286936-86286955 None:intergenic 20.0%
!!! TAGAATTCTTGTTTATTTTC+CGG + chr8.1:86286537-86286556 None:intergenic 20.0%
! AAATCATAATGTATCATGAG+AGG + chr8.1:86286764-86286783 None:intergenic 25.0%
! AATCATAATGTATCATGAGA+GGG + chr8.1:86286763-86286782 None:intergenic 25.0%
! TACTTTCAAAAAATCATTCG+TGG + chr8.1:86287527-86287546 None:intergenic 25.0%
! TTAAAACTTGTAGTGGTTAA+AGG + chr8.1:86286951-86286970 None:intergenic 25.0%
! TTAAAAGACAAGAGAACATA+TGG - chr8.1:86287706-86287725 MS.gene055428:intron 25.0%
! TTAAGTTTAAATGTCTCTGT+TGG + chr8.1:86286605-86286624 None:intergenic 25.0%
! TTATGATAAAGTCGATATGT+TGG - chr8.1:86287867-86287886 MS.gene055428:intron 25.0%
!! ACACAATTTAAAACTTGTAG+TGG + chr8.1:86286958-86286977 None:intergenic 25.0%
!! ACACCAACGTTAAAATTTTA+TGG - chr8.1:86287184-86287203 MS.gene055428:intron 25.0%
!! ACCAACGTTAAAATTTTATG+GGG - chr8.1:86287186-86287205 MS.gene055428:intron 25.0%
!! ACTGACCAATACAATTTTTA+GGG + chr8.1:86287008-86287027 None:intergenic 25.0%
!! ATTTCTTTTACTACGTTTCT+TGG + chr8.1:86287096-86287115 None:intergenic 25.0%
!! CACCAACGTTAAAATTTTAT+GGG - chr8.1:86287185-86287204 MS.gene055428:intron 25.0%
!! TAAAAGAAATACATAACGGA+CGG - chr8.1:86287106-86287125 MS.gene055428:intron 25.0%
!! TATGATTGAAAGGTATGATT+TGG + chr8.1:86286871-86286890 None:intergenic 25.0%
!! TCTCTTGTCTTTTAAATCAT+TGG + chr8.1:86287701-86287720 None:intergenic 25.0%
!!! AGAATTCTTGTTTATTTTCC+GGG + chr8.1:86286536-86286555 None:intergenic 25.0%
!!! TGTCTTTTAAATCATTGGTT+AGG + chr8.1:86287696-86287715 None:intergenic 25.0%
!!! TGTGTTTTTTAATCAGGAAA+TGG + chr8.1:86286476-86286495 None:intergenic 25.0%
!!! TTTTTTTTTACCAACAGTCT+AGG + chr8.1:86287295-86287314 None:intergenic 25.0%
AAACTCAGGAGATAATGAAA+AGG + chr8.1:86288147-86288166 None:intergenic 30.0%
AATATATTCAGCTGCACAAT+TGG + chr8.1:86286652-86286671 None:intergenic 30.0%
AATCTTTACTCGAAGTAATG+AGG - chr8.1:86287776-86287795 MS.gene055428:intron 30.0%
AATGAACATATGCATTCAAG+AGG + chr8.1:86287735-86287754 None:intergenic 30.0%
AATTGTGATAGCTAAAGTGT+CGG + chr8.1:86286823-86286842 None:intergenic 30.0%
ACATGTGGATAGTATAAGAA+TGG + chr8.1:86287338-86287357 None:intergenic 30.0%
ATAAGCTGGTATCTTAAGAA+AGG - chr8.1:86288369-86288388 MS.gene055428:intron 30.0%
ATCCACCCTAAAAATTGTAT+TGG - chr8.1:86287000-86287019 MS.gene055428:intron 30.0%
ATCCTACCATTATTCCTAAT+TGG - chr8.1:86288013-86288032 MS.gene055428:intron 30.0%
ATGAACATATGCATTCAAGA+GGG + chr8.1:86287734-86287753 None:intergenic 30.0%
ATTCCGTTTAGTAGAATCAT+AGG + chr8.1:86287416-86287435 None:intergenic 30.0%
ATTCTTTCAATCCTGTTTGA+CGG + chr8.1:86288711-86288730 None:intergenic 30.0%
ATTTATAGTTATTCCACACG+CGG + chr8.1:86288203-86288222 None:intergenic 30.0%
CAACAACTCAATTAAAACCT+CGG + chr8.1:86288631-86288650 None:intergenic 30.0%
CGACTTTATCATAATCCTTA+AGG + chr8.1:86287861-86287880 None:intergenic 30.0%
CTAGAAGACATTAATGCAAT+AGG - chr8.1:86286554-86286573 MS.gene055428:CDS 30.0%
GTACTAAATGTACTCCAATT+AGG + chr8.1:86288030-86288049 None:intergenic 30.0%
GTTCAATTCAATCTGTTGTT+CGG + chr8.1:86286106-86286125 None:intergenic 30.0%
TATTTCTTCTCTCGTAAGAA+TGG - chr8.1:86288263-86288282 MS.gene055428:intron 30.0%
TCATTCTAGATCAAGAGAAA+AGG - chr8.1:86287750-86287769 MS.gene055428:intron 30.0%
TCCAAAAGAGTAAGAATGAA+CGG - chr8.1:86286126-86286145 MS.gene055428:CDS 30.0%
TGTACTCCAATTAGGAATAA+TGG + chr8.1:86288022-86288041 None:intergenic 30.0%
TTCCGTTTAGTAGAATCATA+GGG + chr8.1:86287415-86287434 None:intergenic 30.0%
TTCTTTAAGCATATGAGTGA+AGG - chr8.1:86288414-86288433 MS.gene055428:intron 30.0%
TTGAAAATTTCCTAGACTGT+TGG - chr8.1:86287282-86287301 MS.gene055428:intron 30.0%
TTGCTTCATAATGTTAAGGA+GGG + chr8.1:86286069-86286088 None:intergenic 30.0%
TTGGAGTACATTTAGTACAA+TGG - chr8.1:86288032-86288051 MS.gene055428:intron 30.0%
TTGGATTTCATAGATGACTA+AGG + chr8.1:86287077-86287096 None:intergenic 30.0%
TTTCCAAGTATACCTAACTT+GGG - chr8.1:86288228-86288247 MS.gene055428:intron 30.0%
! AATTGAGTTGTTGAAGAAGT+CGG - chr8.1:86288638-86288657 MS.gene055428:intron 30.0%
! AGTTTTTGAACAGATGTCAA+AGG - chr8.1:86287990-86288009 MS.gene055428:intron 30.0%
! ATGTTTTGCAGGTATATGAT+TGG - chr8.1:86287560-86287579 MS.gene055428:intron 30.0%
! CACTGACCAATACAATTTTT+AGG + chr8.1:86287009-86287028 None:intergenic 30.0%
! CTAAAAATTGTATTGGTCAG+TGG - chr8.1:86287007-86287026 MS.gene055428:intron 30.0%
! TTAAGACATTATTTGAGGCA+AGG + chr8.1:86287498-86287517 None:intergenic 30.0%
!! GAATTCTTGTTTATTTTCCG+GGG + chr8.1:86286535-86286554 None:intergenic 30.0%
AAAACATGATAGAGCTCTTC+AGG - chr8.1:86285880-86285899 MS.gene055428:CDS 35.0%
AGAAAAGCTTTACGAGGAAT+GGG - chr8.1:86288302-86288321 MS.gene055428:intron 35.0%
AGGGTCATATTGCTGAAAAT+AGG - chr8.1:86288478-86288497 MS.gene055428:intron 35.0%
ATGGTTAAAACAACTGCAGT+AGG - chr8.1:86285938-86285957 MS.gene055428:CDS 35.0%
ATGTCCAAATTCGACTACAT+GGG - chr8.1:86288443-86288462 MS.gene055428:intron 35.0%
CATACTTTCATGCATTCCAA+AGG + chr8.1:86287443-86287462 None:intergenic 35.0%
CATTATCTCCTGAGTTTGTA+TGG - chr8.1:86288150-86288169 MS.gene055428:intron 35.0%
CTCCAATTAGGAATAATGGT+AGG + chr8.1:86288018-86288037 None:intergenic 35.0%
GAAACCCAAGCCAATAAAAT+TGG - chr8.1:86288560-86288579 MS.gene055428:intron 35.0%
GGCTGCAATGTATATTAAGA+TGG - chr8.1:86288053-86288072 MS.gene055428:intron 35.0%
GGGTCATATTGCTGAAAATA+GGG - chr8.1:86288479-86288498 MS.gene055428:intron 35.0%
GTAAGAATGGACGATATTGA+GGG - chr8.1:86288276-86288295 MS.gene055428:intron 35.0%
GTTGCTTCATAATGTTAAGG+AGG + chr8.1:86286070-86286089 None:intergenic 35.0%
GTTTCCAAGTATACCTAACT+TGG - chr8.1:86288227-86288246 MS.gene055428:intron 35.0%
TAAGAATGGACGATATTGAG+GGG - chr8.1:86288277-86288296 MS.gene055428:intron 35.0%
TAAGATACCAGCTTATGAGA+AGG + chr8.1:86288365-86288384 None:intergenic 35.0%
TAGTAGAATCATAGGGGAAA+TGG + chr8.1:86287408-86287427 None:intergenic 35.0%
TATCCCAAGTTAGGTATACT+TGG + chr8.1:86288234-86288253 None:intergenic 35.0%
TCAAGGATCAATAGAGAAGA+TGG - chr8.1:86287963-86287982 MS.gene055428:intron 35.0%
TCCCCTATGATTCTACTAAA+CGG - chr8.1:86287410-86287429 MS.gene055428:intron 35.0%
TCCGTTTAGTAGAATCATAG+GGG + chr8.1:86287414-86287433 None:intergenic 35.0%
TCGAAGTAATGAGGAGTAAA+AGG - chr8.1:86287785-86287804 MS.gene055428:intron 35.0%
TCTTTGGTACGATAGAGATT+GGG + chr8.1:86286212-86286231 None:intergenic 35.0%
TGCTTCATAATGTTAAGGAG+GGG + chr8.1:86286068-86286087 None:intergenic 35.0%
TGCTTCTGTGTTGAATCAAT+GGG - chr8.1:86285790-86285809 MS.gene055428:CDS 35.0%
TGTTGGACCATTCCATAATA+CGG - chr8.1:86286241-86286260 MS.gene055428:CDS 35.0%
TTACTGACAGTTTGCAAATC+TGG + chr8.1:86287366-86287385 None:intergenic 35.0%
TTGAATCAATGGGAGAATGA+AGG - chr8.1:86285800-86285819 MS.gene055428:CDS 35.0%
TTGCCAAATAGATGACACTT+TGG - chr8.1:86286782-86286801 MS.gene055428:CDS 35.0%
TTGGTCATGATATAGTTCTC+AGG + chr8.1:86286508-86286527 None:intergenic 35.0%
TTTAAGCATATGAGTGAAGG+TGG - chr8.1:86288417-86288436 MS.gene055428:intron 35.0%
TTTGGACACAGATTGAACAA+TGG + chr8.1:86286918-86286937 None:intergenic 35.0%
! ACCGTTCATTCTTACTCTTT+TGG + chr8.1:86286130-86286149 None:intergenic 35.0%
! ACGTTAAAATTTTATGGGGC+CGG - chr8.1:86287190-86287209 MS.gene055428:intron 35.0%
! AGGAATGCAGCCAATTTTAT+TGG + chr8.1:86288573-86288592 None:intergenic 35.0%
! ATTGAGTTGTTGAAGAAGTC+GGG - chr8.1:86288639-86288658 MS.gene055428:intron 35.0%
! GACTAATGAACATGTTTTGC+AGG - chr8.1:86287549-86287568 MS.gene055428:intron 35.0%
! GCTGTTGCTTCATAATGTTA+AGG + chr8.1:86286073-86286092 None:intergenic 35.0%
! TAACATGGTAGTGTATTGGA+TGG + chr8.1:86286158-86286177 None:intergenic 35.0%
! TAGCCAAAGTGTCATCTATT+TGG + chr8.1:86286788-86286807 None:intergenic 35.0%
!! AGCACAAGAGTGCTTAAAAA+AGG - chr8.1:86288089-86288108 MS.gene055428:intron 35.0%
!! CCTATTCTAGAATCATCAGA+GGG + chr8.1:86288339-86288358 None:intergenic 35.0%
!! GACCAATACAATTTTTAGGG+TGG + chr8.1:86287005-86287024 None:intergenic 35.0%
!! GCCCCATAAAATTTTAACGT+TGG + chr8.1:86287190-86287209 None:intergenic 35.0%
!! TCCTATTCTAGAATCATCAG+AGG + chr8.1:86288340-86288359 None:intergenic 35.0%
!!! CCTAGCTTTTTTGGTTTTTG+CGG - chr8.1:86285961-86285980 MS.gene055428:CDS 35.0%
!!! TGCTAGTTTTCGCTGTTTTA+GGG - chr8.1:86286021-86286040 MS.gene055428:CDS 35.0%
AACTCTGCAAAGTTCCCATT+TGG + chr8.1:86285837-86285856 None:intergenic 40.0%
AAGAATGGACGATATTGAGG+GGG - chr8.1:86288278-86288297 MS.gene055428:intron 40.0%
AAGGAAGGAATCTCACCAAA+TGG - chr8.1:86285819-86285838 MS.gene055428:CDS 40.0%
AATATCTGGTTGTCCTCTTG+TGG - chr8.1:86287937-86287956 MS.gene055428:intron 40.0%
ACTAAACGGAATGCTTCCTT+TGG - chr8.1:86287424-86287443 MS.gene055428:intron 40.0%
AGGAAGGAATCTCACCAAAT+GGG - chr8.1:86285820-86285839 MS.gene055428:CDS 40.0%
ATATCATGACCAAACTACCC+CGG - chr8.1:86286515-86286534 MS.gene055428:CDS 40.0%
ATCAATGGGAGAATGAAGGA+AGG - chr8.1:86285804-86285823 MS.gene055428:CDS 40.0%
CAACACTTCCATACAAACTC+AGG + chr8.1:86288161-86288180 None:intergenic 40.0%
CAGAAAAGCTTTACGAGGAA+TGG - chr8.1:86288301-86288320 MS.gene055428:intron 40.0%
CCATCAGCCAAAGTAAAAAC+AGG - chr8.1:86286445-86286464 MS.gene055428:CDS 40.0%
CCGCAAAAACCAAAAAAGCT+AGG + chr8.1:86285964-86285983 None:intergenic 40.0%
CGACAAGTGATTCAAAGAGT+TGG - chr8.1:86288538-86288557 MS.gene055428:intron 40.0%
CGAGAGAAGAAATAACAGCA+TGG + chr8.1:86288257-86288276 None:intergenic 40.0%
CGTAAGAATGGACGATATTG+AGG - chr8.1:86288275-86288294 MS.gene055428:intron 40.0%
CTGCTTCTGTGTTGAATCAA+TGG - chr8.1:86285789-86285808 MS.gene055428:CDS 40.0%
CTTCGTCTTGACAAAGCTTA+AGG + chr8.1:86288593-86288612 None:intergenic 40.0%
GACTCTGTACATGAACCTTA+AGG - chr8.1:86287843-86287862 MS.gene055428:intron 40.0%
GATCTAATCGCAAGAGTTCA+CGG - chr8.1:86287640-86287659 MS.gene055428:intron 40.0%
GATGATCACCATCCGTATTA+TGG + chr8.1:86286256-86286275 None:intergenic 40.0%
GATGTCCAAATTCGACTACA+TGG - chr8.1:86288442-86288461 MS.gene055428:intron 40.0%
GCAGATATTCTAAACCTCTC+TGG + chr8.1:86287598-86287617 None:intergenic 40.0%
GCTTCATAATGTTAAGGAGG+GGG + chr8.1:86286067-86286086 None:intergenic 40.0%
GTCTTTGGTACGATAGAGAT+TGG + chr8.1:86286213-86286232 None:intergenic 40.0%
TACCACGTCAAAAGTTTAGC+CGG + chr8.1:86287212-86287231 None:intergenic 40.0%
TAGGAAACCTTCTCATAAGC+TGG - chr8.1:86288355-86288374 MS.gene055428:intron 40.0%
TCACCATCCGTATTATGGAA+TGG + chr8.1:86286251-86286270 None:intergenic 40.0%
TCGACCTAATATTCTACCCT+CGG + chr8.1:86288115-86288134 None:intergenic 40.0%
TGCTGAAAATAGGGTTTCTG+AGG - chr8.1:86288488-86288507 MS.gene055428:intron 40.0%
TTAACGTTGGTGTGAGAACA+TGG + chr8.1:86287177-86287196 None:intergenic 40.0%
! AGGCTAACATGGTAGTGTAT+TGG + chr8.1:86286162-86286181 None:intergenic 40.0%
! CTGAGTTTGTATGGAAGTGT+TGG - chr8.1:86288159-86288178 MS.gene055428:intron 40.0%
! GCAAATCTGGAATTGACATG+TGG + chr8.1:86287353-86287372 None:intergenic 40.0%
! GTTTTTACTTTGGCTGATGG+AGG + chr8.1:86286445-86286464 None:intergenic 40.0%
! TAACAGCTTTTGCAGTGACT+GGG - chr8.1:86286622-86286641 MS.gene055428:CDS 40.0%
! TAGGGTGGATTTCATAGTCT+TGG + chr8.1:86286990-86287009 None:intergenic 40.0%
! TCTATTTTCAGCAGGACAAC+AGG + chr8.1:86286398-86286417 None:intergenic 40.0%
! TTAACAGCTTTTGCAGTGAC+TGG - chr8.1:86286621-86286640 MS.gene055428:CDS 40.0%
! TTTGTGTGTGTGTTGCTGAT+TGG + chr8.1:86286693-86286712 None:intergenic 40.0%
!! CCCTCTGATGATTCTAGAAT+AGG - chr8.1:86288336-86288355 MS.gene055428:intron 40.0%
!! GAGGGGGTATGTTTTTAACA+CGG + chr8.1:86286051-86286070 None:intergenic 40.0%
!! GTATGGAAGTGTTGGAAACA+AGG - chr8.1:86288167-86288186 MS.gene055428:intron 40.0%
!! GTTTATTTTCCGGGGTAGTT+TGG + chr8.1:86286527-86286546 None:intergenic 40.0%
!! TGCAGCCAATTTTATTGGCT+TGG + chr8.1:86288568-86288587 None:intergenic 40.0%
!!! CCTGTTTTTACTTTGGCTGA+TGG + chr8.1:86286448-86286467 None:intergenic 40.0%
!!! CTGCTAGTTTTCGCTGTTTT+AGG - chr8.1:86286020-86286039 MS.gene055428:CDS 40.0%
!!! GCAGCCAATTTTATTGGCTT+GGG + chr8.1:86288567-86288586 None:intergenic 40.0%
!!! GCTAGTTTTCGCTGTTTTAG+GGG - chr8.1:86286022-86286041 MS.gene055428:CDS 40.0%
!!! GGTTGCTCCTGTTTTTACTT+TGG + chr8.1:86286455-86286474 None:intergenic 40.0%
AAGCATATGAGTGAAGGTGG+TGG - chr8.1:86288420-86288439 MS.gene055428:intron 45.0%
AAGGCCGAGGGTAGAATATT+AGG - chr8.1:86288108-86288127 MS.gene055428:intron 45.0%
ACAGAAGCAGAACCCAATTC+AGG + chr8.1:86285779-86285798 None:intergenic 45.0%
ACAGCATGGTATCCCAAGTT+AGG + chr8.1:86288243-86288262 None:intergenic 45.0%
ACATGGGAGCTTCTTTCTGA+GGG - chr8.1:86288459-86288478 MS.gene055428:intron 45.0%
AGCTCCCATGTAGTCGAATT+TGG + chr8.1:86288450-86288469 None:intergenic 45.0%
ATGGAATGGTCCAACAACAG+TGG + chr8.1:86286237-86286256 None:intergenic 45.0%
CATCTACAGTGAGGCTAACA+TGG + chr8.1:86286173-86286192 None:intergenic 45.0%
CGTAGTTCACATCTACAGTG+AGG + chr8.1:86286182-86286201 None:intergenic 45.0%
GAGTGCTTAAAAAAGGCCGA+GGG - chr8.1:86288096-86288115 MS.gene055428:intron 45.0%
GCAAAGATGAACCGTCAAAC+AGG - chr8.1:86288697-86288716 MS.gene055428:CDS 45.0%
GGACCATTCCATAATACGGA+TGG - chr8.1:86286245-86286264 MS.gene055428:CDS 45.0%
GGATGAACAATAGACCAGAG+AGG - chr8.1:86287581-86287600 MS.gene055428:intron 45.0%
TACATGGGAGCTTCTTTCTG+AGG - chr8.1:86288458-86288477 MS.gene055428:intron 45.0%
TGATCCTTGAGATCCACAAG+AGG + chr8.1:86287953-86287972 None:intergenic 45.0%
TTGGTACGATAGAGATTGGG+AGG + chr8.1:86286209-86286228 None:intergenic 45.0%
TTGTCAAGACGAAGACGACA+TGG - chr8.1:86288599-86288618 MS.gene055428:intron 45.0%
TTGTCCTCTTGTGGATCTCA+AGG - chr8.1:86287946-86287965 MS.gene055428:intron 45.0%
! AACAGCTTTTGCAGTGACTG+GGG - chr8.1:86286623-86286642 MS.gene055428:CDS 45.0%
! AAGCCTTATCCCACTAAGTG+GGG + chr8.1:86286293-86286312 None:intergenic 45.0%
! ACGAGGAATGGGTTTCTGTA+AGG - chr8.1:86288313-86288332 MS.gene055428:intron 45.0%
! AGAGTGCTTAAAAAAGGCCG+AGG - chr8.1:86288095-86288114 MS.gene055428:intron 45.0%
! CAAGCCTTATCCCACTAAGT+GGG + chr8.1:86286294-86286313 None:intergenic 45.0%
! GGAGGGATTCTATTTTCAGC+AGG + chr8.1:86286406-86286425 None:intergenic 45.0%
!!! TGCAGTAGGCCTAGCTTTTT+TGG - chr8.1:86285952-86285971 MS.gene055428:CDS 45.0%
!!! TTGGTTTTTGCGGTGCTGTT+TGG - chr8.1:86285971-86285990 MS.gene055428:CDS 45.0%
!!! TATAAATTTTTTAATTCAAA+AGG - chr8.1:86287143-86287162 MS.gene055428:intron 5.0%
ACAGGCCAATGAAGCAGTTC+TGG + chr8.1:86286380-86286399 None:intergenic 50.0%
ACCAAAGACGCCACTGTTGT+TGG - chr8.1:86286224-86286243 MS.gene055428:CDS 50.0%
ACGTTGGTGTGAGAACATGG+AGG + chr8.1:86287174-86287193 None:intergenic 50.0%
CCACTTAGTGGGATAAGGCT+TGG - chr8.1:86286292-86286311 MS.gene055428:CDS 50.0%
CCATAACGACGAAGCGTATG+CGG - chr8.1:86288665-86288684 MS.gene055428:intron 50.0%
CTCCACCAGAACTGCTTCAT+TGG - chr8.1:86286372-86286391 MS.gene055428:CDS 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr8.1:86286289-86286308 None:intergenic 50.0%
GTCAGTGGTGACTCAGTTGA+TGG - chr8.1:86287022-86287041 MS.gene055428:intron 50.0%
GTTATCCGACCCCACTTAGT+GGG - chr8.1:86286281-86286300 MS.gene055428:CDS 50.0%
TCCAACAACAGTGGCGTCTT+TGG + chr8.1:86286228-86286247 None:intergenic 50.0%
TGTTATCCGACCCCACTTAG+TGG - chr8.1:86286280-86286299 MS.gene055428:CDS 50.0%
! ACTTTGGCTGATGGAGGCAT+CGG + chr8.1:86286439-86286458 None:intergenic 50.0%
! CCAAGCCTTATCCCACTAAG+TGG + chr8.1:86286295-86286314 None:intergenic 50.0%
!! CACGGAGTTTCTAGTGCAGA+AGG - chr8.1:86287658-86287677 MS.gene055428:intron 50.0%
AGGACGAAGTTTACCGCGTG+TGG - chr8.1:86288187-86288206 MS.gene055428:intron 55.0%
CCGCATACGCTTCGTCGTTA+TGG + chr8.1:86288668-86288687 None:intergenic 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr8.1:86286287-86286306 MS.gene055428:CDS 55.0%
GGGGGCAGAAAAGCTTTACG+AGG - chr8.1:86288296-86288315 MS.gene055428:intron 55.0%
! GGCCAATGAAGCAGTTCTGG+TGG + chr8.1:86286377-86286396 None:intergenic 55.0%
! GGCCGGCTAAACTTTTGACG+TGG - chr8.1:86287207-86287226 MS.gene055428:intron 55.0%
!! GCATCGGTGACTGGTTTGGA+GGG + chr8.1:86286423-86286442 None:intergenic 55.0%
!! TTCTGAGGCGCTTTCGTGCT+TGG - chr8.1:86288503-86288522 MS.gene055428:intron 55.0%
!! CTGATGGAGGCATCGGTGAC+TGG + chr8.1:86286432-86286451 None:intergenic 60.0%
!! GGAGGCATCGGTGACTGGTT+TGG + chr8.1:86286427-86286446 None:intergenic 60.0%
!! GGCATCGGTGACTGGTTTGG+AGG + chr8.1:86286424-86286443 None:intergenic 60.0%
!! AGACGACATGGAGAGCGCCG+AGG - chr8.1:86288611-86288630 MS.gene055428:intron 65.0%


Chromosome Type Strat End Strand Name
chr8.1 gene 86285767 86288806 86285767 ID=MS.gene055428
chr8.1 mRNA 86285767 86288806 86285767 ID=MS.gene055428.t1;Parent=MS.gene055428
chr8.1 exon 86288672 86288806 86288672 ID=MS.gene055428.t1.exon1;Parent=MS.gene055428.t1
chr8.1 CDS 86288672 86288806 86288672 ID=cds.MS.gene055428.t1;Parent=MS.gene055428.t1
chr8.1 exon 86285767 86287002 86285767 ID=MS.gene055428.t1.exon2;Parent=MS.gene055428.t1
chr8.1 CDS 86285767 86287002 86285767 ID=cds.MS.gene055428.t1;Parent=MS.gene055428.t1
Gene Sequence

>MS.gene055428

ATGGAGAATCCTGAATTGGGTTCTGCTTCTGTGTTGAATCAATGGGAGAATGAAGGAAGGAATCTCACCAAATGGGAACTTTGCAGAGTTGTTAAAGAGTTGAGAAAGTACAGAAAACATGATAGAGCTCTTCAGGTAAATCAATCAATTCTTCATTATATGTTATTCTATATGGTTAAAACAACTGCAGTAGGCCTAGCTTTTTTGGTTTTTGCGGTGCTGTTTGGCTAGTTGTTACAGCAGCATCTGCAGTCTGCTAGTTTTCGCTGTTTTAGGGGATTCCGTGTTAAAAACATACCCCCTCCTTAACATTATGAAGCAACAGCTGAGCTTGCTCCGAACAACAGATTGAATTGAACTCCAAAAGAGTAAGAATGAACGGTGTTAGCCATCCAATACACTACCATGTTAGCCTCACTGTAGATGTGAACTACGCACACCTCCCAATCTCTATCGTACCAAAGACGCCACTGTTGTTGGACCATTCCATAATACGGATGGTGATCATCATAGTGTTATCCGACCCCACTTAGTGGGATAAGGCTTGGTTGTTGTTGATCGTCATAGTGTTCAGACTTAAACTGAACAACAATTCTTGAGTCACACTCCACCAGAACTGCTTCATTGGCCTGTTGTCCTGCTGAAAATAGAATCCCTCCAAACCAGTCACCGATGCCTCCATCAGCCAAAGTAAAAACAGGAGCAACCATTTCCTGATTAAAAAACACAATTCTTGTTCCTGAGAACTATATCATGACCAAACTACCCCGGAAAATAAACAAGAATTCTAGAAGACATTAATGCAATAGGACATAGAAACATCTCAAGATTCTCACCAACAGAGACATTTAAACTTAACAGCTTTTGCAGTGACTGGGGCAACCAATTGTGCAGCTGAATATATTAAAAATTTGACAAAAATGCCAATCAGCAACACACACACAAAAAAAAAAAAAAAGGATGATGTAGTGCAAACAAATGCAATGTGTTTTGCCCTCTCATGATACATTATGATTTGCCAAATAGATGACACTTTGGCTATCACAATTCACACCGACACTTTAGCTATCACAATTCACACATCCTTAATAATTTCTATCTCCAAATCATACCTTTCAATCATATTTTGTGTTTAATTTAATTAACAACCATTGTTCAATCTGTGTCCAAAAAATCAAAAACCTTTAACCACTACAAGTTTTAAATTGTGTCATAAAAATCCAAGACTATGAAATCCACCCTAAAAATTGTATTGGTCAGTGGTGACTCAGTTGATGGATTTTCAATAATTAAATTAGATTTTGATTCCTTAGTCATCTATGAAATCCAAGAAACGTAGTAAAAGAAATACATAACGGACGGACACCTCAAACTGATATAAATTTTTTAATTCAAAAGGTAAGTCCTCCATGTTCTCACACCAACGTTAAAATTTTATGGGGCCGGCTAAACTTTTGACGTGGTAAATGACTCATCTGTGTGTTGTTGTGCATTCATAATGCAGCCCTGAATATATTGAAAATTTCCTAGACTGTTGGTAAAAAAAAAAAAAAAACTGAACTGTAGCACCATTCTTATACTATCCACATGTCAATTCCAGATTTGCAAACTGTCAGTAAAGTTTAATAATCTAGAAGTCCATTTCCCCTATGATTCTACTAAACGGAATGCTTCCTTTGGAATGCATGAAAGTATGACATCACTCATTGTTTCTGATTGAATATACTTCCTTGCCTCAAATAATGTCTTAATATCAGCCACGAATGATTTTTTGAAAGTAATGACTAATGAACATGTTTTGCAGGTATATGATTGGATGAACAATAGACCAGAGAGGTTTAGAATATCTGCAAGTGACGTTGCGATTCAGTTAGATCTAATCGCAAGAGTTCACGGAGTTTCTAGTGCAGAAGGTTTTTTTCTGAACCTAACCAATGATTTAAAAGACAAGAGAACATATGGTGCCCTCTTGAATGCATATGTTCATTCTAGATCAAGAGAAAAGGCAGAATCTTTACTCGAAGTAATGAGGAGTAAAAGGTACTTAATACATTCACTACCGTTTAATTTAATGATGACTCTGTACATGAACCTTAAGGATTATGATAAAGTCGATATGTTGGTTTCAGAAATGAAAGAAAAGAACATACAGCTAGATATATATACATATAATATCTGGTTGTCCTCTTGTGGATCTCAAGGATCAATAGAGAAGATGGAACAAGTTTTTGAACAGATGTCAAAGGATCCTACCATTATTCCTAATTGGAGTACATTTAGTACAATGGCTGCAATGTATATTAAGATGGAACTGTTTGAAAAAGCACAAGAGTGCTTAAAAAAGGCCGAGGGTAGAATATTAGGTCGAGATAAAGTACCTTTTCATTATCTCCTGAGTTTGTATGGAAGTGTTGGAAACAAGGACGAAGTTTACCGCGTGTGGAATAACTATAAATCAATGTTTCCAAGTATACCTAACTTGGGATACCATGCTGTTATTTCTTCTCTCGTAAGAATGGACGATATTGAGGGGGCAGAAAAGCTTTACGAGGAATGGGTTTCTGTAAGGCCCTCTGATGATTCTAGAATAGGAAACCTTCTCATAAGCTGGTATCTTAAGAAAGGTAAATCAGATAAAGTTTTTAGCTTCTTTAAGCATATGAGTGAAGGTGGTGGATGTCCAAATTCGACTACATGGGAGCTTCTTTCTGAGGGTCATATTGCTGAAAATAGGGTTTCTGAGGCGCTTTCGTGCTTGGAAAAAGCTTTTACGACAAGTGATTCAAAGAGTTGGAAACCCAAGCCAATAAAATTGGCTGCATTCCTTAAGCTTTGTCAAGACGAAGACGACATGGAGAGCGCCGAGGTTTTAATTGAGTTGTTGAAGAAGTCGGGATACCATAACGACGAAGCGTATGCGGCACTCATTAGCAAAGATGAACCGTCAAACAGGATTGAAAGAATTGATGATGTTGACAGTGAAAACATTGATGATGATGACTCTCAAGTGTTGTTCAGCCAAGTAGATAGTAGCTTTTGA

Protein sequence

>MS.gene055428.t1

MENPELGSASVLNQWENEGRNLTKWELCRVVKELRKYRKHDRALQVYDWMNNRPERFRISASDVAIQLDLIARVHGVSSAEGFFLNLTNDLKDKRTYGALLNAYVHSRSREKAESLLEVMRSKRYLIHSLPFNLMMTLYMNLKDYDKVDMLVSEMKEKNIQLDIYTYNIWLSSCGSQGSIEKMEQVFEQMSKDPTIIPNWSTFSTMAAMYIKMELFEKAQECLKKAEGRILGRDKVPFHYLLSLYGSVGNKDEVYRVWNNYKSMFPSIPNLGYHAVISSLVRMDDIEGAEKLYEEWVSVRPSDDSRIGNLLISWYLKKGKSDKVFSFFKHMSEGGGCPNSTTWELLSEGHIAENRVSEALSCLEKAFTTSDSKSWKPKPIKLAAFLKLCQDEDDMESAEVLIELLKKSGYHNDEAYAALISKDEPSNRIERIDDVDSENIDDDDSQVLFSQVDSSF