Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59159.t1 | GAU10313.1 | 61.2 | 513 | 190 | 4 | 156 | 665 | 10 | 516 | 4.10E-163 | 585.1 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59159.t1 | Q7VG78 | 40.5 | 153 | 91 | 0 | 3 | 155 | 794 | 946 | 2.5e-31 | 138.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59159.t1 | A0A1B5Z879 | 61.2 | 513 | 190 | 4 | 156 | 665 | 10 | 516 | 3.0e-163 | 585.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051388 | MS.gene59159 | 0.819788 | 9.66E-53 | -1.69E-46 |
| MS.gene055468 | MS.gene59159 | 0.80057 | 1.35E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59159.t1 | MTR_0009s0230 | 95.302 | 149 | 7 | 0 | 7 | 155 | 121 | 269 | 2.08e-99 | 307 |
| MS.gene59159.t1 | MTR_0009s0230 | 95.918 | 147 | 6 | 0 | 9 | 155 | 122 | 268 | 1.84e-98 | 305 |
| MS.gene59159.t1 | MTR_8g066040 | 63.253 | 166 | 44 | 1 | 7 | 155 | 125 | 290 | 1.04e-70 | 233 |
| MS.gene59159.t1 | MTR_4g130880 | 51.748 | 143 | 69 | 0 | 11 | 153 | 161 | 303 | 4.64e-49 | 176 |
| MS.gene59159.t1 | MTR_4g007070 | 49.057 | 159 | 75 | 1 | 3 | 155 | 136 | 294 | 5.73e-49 | 176 |
| MS.gene59159.t1 | MTR_2g063510 | 45.638 | 149 | 79 | 1 | 7 | 155 | 210 | 356 | 3.90e-43 | 160 |
| MS.gene59159.t1 | MTR_3g111690 | 43.919 | 148 | 82 | 1 | 7 | 153 | 137 | 284 | 5.51e-40 | 150 |
| MS.gene59159.t1 | MTR_8g447000 | 40.940 | 149 | 86 | 1 | 7 | 155 | 204 | 350 | 8.57e-40 | 150 |
| MS.gene59159.t1 | MTR_4g130880 | 45.161 | 93 | 51 | 0 | 11 | 103 | 161 | 253 | 2.36e-23 | 100 |
| MS.gene59159.t1 | MTR_2g063510 | 40.741 | 108 | 61 | 2 | 7 | 114 | 210 | 314 | 1.49e-19 | 90.5 |
| MS.gene59159.t1 | MTR_3g094110 | 26.259 | 278 | 151 | 6 | 204 | 479 | 2 | 227 | 4.35e-19 | 88.2 |
| MS.gene59159.t1 | MTR_8g447000 | 38.776 | 98 | 58 | 1 | 7 | 104 | 204 | 299 | 1.58e-17 | 84.7 |
| MS.gene59159.t1 | MTR_3g012220 | 33.898 | 177 | 102 | 6 | 156 | 324 | 15 | 184 | 2.55e-17 | 80.9 |
| MS.gene59159.t1 | MTR_1g050915 | 36.607 | 112 | 68 | 1 | 208 | 319 | 3 | 111 | 9.67e-14 | 72.0 |
| MS.gene59159.t1 | MTR_6g472120 | 40.000 | 100 | 59 | 1 | 211 | 310 | 6 | 104 | 1.01e-13 | 68.2 |
| MS.gene59159.t1 | MTR_0029s0220 | 33.333 | 114 | 73 | 1 | 184 | 294 | 15 | 128 | 4.83e-13 | 67.0 |
| MS.gene59159.t1 | MTR_0042s0120 | 37.624 | 101 | 60 | 1 | 208 | 308 | 3 | 100 | 7.66e-11 | 65.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59159.t1 | AT1G13635 | 61.074 | 149 | 58 | 0 | 7 | 155 | 124 | 272 | 7.74e-64 | 214 |
| MS.gene59159.t1 | AT1G13635 | 61.074 | 149 | 58 | 0 | 7 | 155 | 124 | 272 | 7.74e-64 | 214 |
| MS.gene59159.t1 | AT5G57970 | 48.299 | 147 | 76 | 0 | 7 | 153 | 163 | 309 | 2.95e-48 | 173 |
| MS.gene59159.t1 | AT5G57970 | 48.299 | 147 | 76 | 0 | 7 | 153 | 163 | 309 | 2.95e-48 | 173 |
| MS.gene59159.t1 | AT1G75090 | 48.980 | 147 | 75 | 0 | 7 | 153 | 128 | 274 | 2.55e-47 | 170 |
| MS.gene59159.t1 | AT1G15970 | 47.651 | 149 | 78 | 0 | 7 | 155 | 154 | 302 | 2.60e-44 | 162 |
| MS.gene59159.t1 | AT1G15970 | 47.651 | 149 | 78 | 0 | 7 | 155 | 154 | 302 | 2.60e-44 | 162 |
| MS.gene59159.t1 | AT1G80850 | 48.993 | 149 | 72 | 2 | 7 | 153 | 143 | 289 | 1.00e-43 | 160 |
| MS.gene59159.t1 | AT5G44680 | 41.611 | 149 | 85 | 1 | 7 | 155 | 173 | 319 | 4.42e-40 | 150 |
| MS.gene59159.t1 | AT3G12710 | 39.597 | 149 | 88 | 1 | 7 | 155 | 131 | 277 | 8.57e-37 | 140 |
Find 164 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAAGCGCGGCTTTAGATATT+TGG | 0.131071 | 5.1:-37119354 | MS.gene59159:CDS |
| GACTTCCTTCTCCTCCATTT+TGG | 0.156245 | 5.1:+37120001 | None:intergenic |
| TCAAATTTGTCCACCGTTAC+AGG | 0.199009 | 5.1:+37116082 | None:intergenic |
| TTCTTTGGTGCTTGGTTTGA+TGG | 0.207561 | 5.1:+37115107 | None:intergenic |
| TCCTTACATTGTTTCCAAAA+TGG | 0.227659 | 5.1:-37120015 | MS.gene59159:CDS |
| TTGCTTATGGCATCTGCTTT+TGG | 0.249904 | 5.1:+37119386 | None:intergenic |
| CTTTAATAAGTCCTTGCTTA+TGG | 0.266645 | 5.1:+37119373 | None:intergenic |
| CTACAGATTAGGAGGGAATA+TGG | 0.275504 | 5.1:-37119497 | MS.gene59159:intron |
| GAAAGACTTCTCGGAGACTA+TGG | 0.285519 | 5.1:-37116148 | MS.gene59159:CDS |
| AACTCCCAATCCGCCTTCTT+TGG | 0.293233 | 5.1:+37115092 | None:intergenic |
| CCTGTGGTTGAGTTAAATTA+AGG | 0.306727 | 5.1:+37115384 | None:intergenic |
| TCCCTCTTTCTGTTGGAAAC+TGG | 0.312679 | 5.1:+37115763 | None:intergenic |
| ATTCAAGAGATGTTCCATTA+AGG | 0.327044 | 5.1:-37119412 | MS.gene59159:CDS |
| CAAGTTCTTGATACAGCTTC+TGG | 0.327167 | 5.1:-37115620 | MS.gene59159:CDS |
| ACAGTGTTCATTTGATTCAC+TGG | 0.335503 | 5.1:+37115356 | None:intergenic |
| CTCCACTTGGGTTGCATCCA+TGG | 0.339790 | 5.1:+37115283 | None:intergenic |
| ACCTCCACTTCAATTAGTTC+AGG | 0.344323 | 5.1:+37114801 | None:intergenic |
| GATCATTCAGTAGCTATATA+TGG | 0.347532 | 5.1:-37119475 | MS.gene59159:CDS |
| TGGTAATGGTCAACCTGTTT+CGG | 0.351872 | 5.1:+37116110 | None:intergenic |
| CGAGAAGTCTTTCTTCAGGC+TGG | 0.358108 | 5.1:+37116158 | None:intergenic |
| AGAATTTCATGACGAGTGTT+GGG | 0.361762 | 5.1:-37120560 | MS.gene59159:CDS |
| CCTGTTTCGGTTTCTGTCAC+GGG | 0.363905 | 5.1:+37116123 | None:intergenic |
| AATCCGCCTTCTTTGGTGCT+TGG | 0.367253 | 5.1:+37115099 | None:intergenic |
| ACAGAAAGAGGGAGAGTCCT+TGG | 0.371710 | 5.1:-37115753 | MS.gene59159:CDS |
| GTTCGAGCTGCTTGCATTGT+CGG | 0.373218 | 5.1:-37120208 | MS.gene59159:CDS |
| AATCTGCTTACCAGTGAGTA+TGG | 0.374574 | 5.1:+37115448 | None:intergenic |
| GGATTATATGTATTTGCAAA+AGG | 0.376961 | 5.1:+37115215 | None:intergenic |
| TTCGAGCTGCTTGCATTGTC+GGG | 0.378913 | 5.1:-37120207 | MS.gene59159:CDS |
| CTGTGGTTGAGTTAAATTAA+GGG | 0.383263 | 5.1:+37115385 | None:intergenic |
| ACTTACCTTCATCATGCATT+TGG | 0.389358 | 5.1:+37119911 | None:intergenic |
| GAAACTCTTCAAGTGCTTGT+TGG | 0.391247 | 5.1:+37115994 | None:intergenic |
| AAGCGCGGCTTTAGATATTT+GGG | 0.391567 | 5.1:-37119353 | MS.gene59159:intron |
| ACCTGTTTCGGTTTCTGTCA+CGG | 0.403817 | 5.1:+37116122 | None:intergenic |
| AGTCTTTCTTCAGGCTGGGC+TGG | 0.407028 | 5.1:+37116163 | None:intergenic |
| CAAAAGGGTTATTTCTAAGC+TGG | 0.410701 | 5.1:+37115231 | None:intergenic |
| TGAGATGGAAGATAAGTTCT+TGG | 0.410851 | 5.1:-37115834 | MS.gene59159:CDS |
| CGGTCTATTGCGGGAGTTGA+AGG | 0.411071 | 5.1:-37116050 | MS.gene59159:CDS |
| AGCACCAAAGAAGGCGGATT+GGG | 0.419157 | 5.1:-37115096 | MS.gene59159:CDS |
| CAGTGTTCATTTGATTCACT+GGG | 0.424009 | 5.1:+37115357 | None:intergenic |
| CAGCCTGAAGAAAGACTTCT+CGG | 0.424993 | 5.1:-37116157 | MS.gene59159:CDS |
| GATCAATCCCGGTCTATTGC+GGG | 0.428766 | 5.1:-37116059 | MS.gene59159:CDS |
| GTCCACCGTTACAGGCTGAT+TGG | 0.428806 | 5.1:+37116090 | None:intergenic |
| TTTGGATGGTTCCTCCAGCC+TGG | 0.435969 | 5.1:+37115194 | None:intergenic |
| ATCCTTCTTCATGCTTCTTG+TGG | 0.439190 | 5.1:+37114869 | None:intergenic |
| TCTCCGAGAAGTCTTTCTTC+AGG | 0.443583 | 5.1:+37116154 | None:intergenic |
| GATTGCTGATAGATTACAAC+TGG | 0.448023 | 5.1:-37120185 | MS.gene59159:CDS |
| GCGTCATCAGTCAAAGTAAA+CGG | 0.449083 | 5.1:+37115905 | None:intergenic |
| TATCTGTATTTGTTAATCAC+TGG | 0.455747 | 5.1:+37119434 | None:intergenic |
| GTGAACTACCTCAGCAATCA+AGG | 0.458209 | 5.1:-37115257 | MS.gene59159:CDS |
| GATAGAACTGGTGGTACAAA+AGG | 0.459044 | 5.1:-37115515 | MS.gene59159:CDS |
| TAGAATTTCATGACGAGTGT+TGG | 0.462863 | 5.1:-37120561 | MS.gene59159:CDS |
| CTCTCTGGTTTCTTGAGCTA+AGG | 0.464981 | 5.1:+37115037 | None:intergenic |
| CAGAAAGAGGGAGAGTCCTT+GGG | 0.465171 | 5.1:-37115752 | MS.gene59159:CDS |
| ACTCAGAAAACTTCGAGAAA+AGG | 0.469910 | 5.1:-37116263 | MS.gene59159:CDS |
| ATTCGAAGTAGACAAAGATA+TGG | 0.471232 | 5.1:-37116200 | MS.gene59159:CDS |
| TTCCAGTTTCCAACAGAAAG+AGG | 0.472214 | 5.1:-37115765 | MS.gene59159:CDS |
| GATTATATGTATTTGCAAAA+GGG | 0.472544 | 5.1:+37115216 | None:intergenic |
| CTTCAACTCCCGCAATAGAC+CGG | 0.474541 | 5.1:+37116051 | None:intergenic |
| GTCAAATGTGATTGGTGCAC+TGG | 0.475539 | 5.1:-37115335 | MS.gene59159:CDS |
| AGGACTCTCCCTCTTTCTGT+TGG | 0.475944 | 5.1:+37115756 | None:intergenic |
| AGAAGTAAGAAATGATAAAG+AGG | 0.476321 | 5.1:-37120606 | None:intergenic |
| TGGTAACAGTGTTGCTTGGA+AGG | 0.476408 | 5.1:+37114925 | None:intergenic |
| GAGAAGTCTTTCTTCAGGCT+GGG | 0.477849 | 5.1:+37116159 | None:intergenic |
| CTTGTCGCCTTCTCACAAAC+AGG | 0.479922 | 5.1:+37115792 | None:intergenic |
| GGTAGTTCACCATCTCCACT+TGG | 0.480696 | 5.1:+37115270 | None:intergenic |
| CGTTACAGGCTGATTGGTAA+TGG | 0.484026 | 5.1:+37116096 | None:intergenic |
| AAAATCTTGAAACTCAAGTT+GGG | 0.487349 | 5.1:-37114986 | MS.gene59159:CDS |
| CCCGTGACAGAAACCGAAAC+AGG | 0.488363 | 5.1:-37116123 | MS.gene59159:CDS |
| TCCACTTGGGTTGCATCCAT+GGG | 0.488532 | 5.1:+37115284 | None:intergenic |
| TTGTTTCTTTCCGGATTGCT+CGG | 0.489330 | 5.1:+37116287 | None:intergenic |
| GACAAATTTGAGATCAATCC+CGG | 0.493175 | 5.1:-37116070 | MS.gene59159:CDS |
| TGGTTTGATTCCTTACCTGC+TGG | 0.498060 | 5.1:-37115875 | MS.gene59159:CDS |
| ATCAAACCAAGCACCAAAGA+AGG | 0.505026 | 5.1:-37115105 | MS.gene59159:CDS |
| TCTTACTTGTCATCATAAGC+TGG | 0.505298 | 5.1:+37120532 | None:intergenic |
| CCTTAATTTAACTCAACCAC+AGG | 0.505924 | 5.1:-37115384 | MS.gene59159:CDS |
| AAAGAGGTATTGTGCAGATA+AGG | 0.507731 | 5.1:-37120590 | MS.gene59159:CDS |
| TGTTATGCTACCAGCAGGTA+AGG | 0.508415 | 5.1:+37115865 | None:intergenic |
| ACCTACATGCATGCCGGTAC+CGG | 0.508560 | 5.1:+37111807 | None:intergenic |
| AAAGACTTCTCGGAGACTAT+GGG | 0.510166 | 5.1:-37116147 | MS.gene59159:CDS |
| TTTGCAAATACATATAATCC+AGG | 0.512943 | 5.1:-37115212 | MS.gene59159:CDS |
| AAGCACCAAAGAAGGCGGAT+TGG | 0.515452 | 5.1:-37115097 | MS.gene59159:CDS |
| TGTTTCCAAAATGGAGGAGA+AGG | 0.517813 | 5.1:-37120006 | MS.gene59159:CDS |
| GTTCTGTAATGGTCTACGTC+TGG | 0.518475 | 5.1:-37115651 | MS.gene59159:CDS |
| CGCTGAAGTGACAAAGAGAA+TGG | 0.518635 | 5.1:-37115411 | MS.gene59159:CDS |
| CTACAGACCTGTTTGTGAGA+AGG | 0.518812 | 5.1:-37115799 | MS.gene59159:CDS |
| GAGAGGCTCAAAAGAATACA+AGG | 0.522658 | 5.1:-37115019 | MS.gene59159:CDS |
| CTGCTGGTAGCATAACAACT+TGG | 0.527805 | 5.1:-37115859 | MS.gene59159:CDS |
| CAAGTTGTTATGCTACCAGC+AGG | 0.529478 | 5.1:+37115860 | None:intergenic |
| AACGACTTTGATTATTTGAG+AGG | 0.530796 | 5.1:+37115574 | None:intergenic |
| TGTTGCACTCAATGAACAAA+TGG | 0.532164 | 5.1:-37115546 | MS.gene59159:CDS |
| CAAATACATATAATCCAGGC+TGG | 0.533170 | 5.1:-37115208 | MS.gene59159:CDS |
| AGATCAATCCCGGTCTATTG+CGG | 0.533742 | 5.1:-37116060 | MS.gene59159:CDS |
| TGAACACTGTCAAATGTGAT+TGG | 0.534099 | 5.1:-37115343 | MS.gene59159:CDS |
| CATAACAACTTGGAATGAGA+TGG | 0.537048 | 5.1:-37115849 | MS.gene59159:CDS |
| TTCAACTCCCGCAATAGACC+GGG | 0.543701 | 5.1:+37116052 | None:intergenic |
| GGAACCATCCAAATTTCTCA+TGG | 0.547525 | 5.1:-37115184 | MS.gene59159:CDS |
| GGAGTTAGCAATTGAAGCAA+TGG | 0.548664 | 5.1:-37115075 | MS.gene59159:CDS |
| TCCAGTTTCCAACAGAAAGA+GGG | 0.551110 | 5.1:-37115764 | MS.gene59159:CDS |
| CATTCTCTTTGTCACTTCAG+CGG | 0.552645 | 5.1:+37115412 | None:intergenic |
| GTAGTATCAAAGTTGTGCTC+GGG | 0.553090 | 5.1:+37115689 | None:intergenic |
| GGCACTCTGAAGAAGCCAAA+CGG | 0.554129 | 5.1:-37115940 | MS.gene59159:CDS |
| ATGGAGTTGTATGATAGAAC+TGG | 0.556296 | 5.1:-37115527 | MS.gene59159:CDS |
| AGTAGTATCAAAGTTGTGCT+CGG | 0.558642 | 5.1:+37115688 | None:intergenic |
| AATGCTCAAGCCATACTCAC+TGG | 0.558976 | 5.1:-37115458 | MS.gene59159:CDS |
| CACAATGCATAGTGAAATGA+GGG | 0.561790 | 5.1:+37115312 | None:intergenic |
| TACCACAAGAAGCATGAAGA+AGG | 0.562572 | 5.1:-37114871 | MS.gene59159:CDS |
| TTACATTGTTTCCAAAATGG+AGG | 0.563021 | 5.1:-37120012 | MS.gene59159:CDS |
| TCACAATGCATAGTGAAATG+AGG | 0.563155 | 5.1:+37115311 | None:intergenic |
| TACCAATCAGCCTGTAACGG+TGG | 0.563890 | 5.1:-37116092 | MS.gene59159:CDS |
| TCATCTCAAGCTAAACATGA+TGG | 0.566884 | 5.1:-37114837 | MS.gene59159:CDS |
| GGTAACAGTGTTGCTTGGAA+GGG | 0.567488 | 5.1:+37114926 | None:intergenic |
| GTAGTTCACCATCTCCACTT+GGG | 0.568409 | 5.1:+37115271 | None:intergenic |
| GGAGATCGACACGGACGAAG+AGG | 0.570846 | 5.1:-37116224 | MS.gene59159:CDS |
| GCTGGTTCCCTTGATTGCTG+AGG | 0.571210 | 5.1:+37115249 | None:intergenic |
| TTGAGCTAAGGAATTCATGT+TGG | 0.573044 | 5.1:+37115049 | None:intergenic |
| AATGGAGGAGAAGGAAGTCA+TGG | 0.577176 | 5.1:-37119997 | MS.gene59159:CDS |
| TGATTCACTGGGGCAACCTG+TGG | 0.579026 | 5.1:+37115368 | None:intergenic |
| CGAAGTAGACAAAGATATGG+AGG | 0.579520 | 5.1:-37116197 | MS.gene59159:CDS |
| GCCTCCTGAACTAATTGAAG+TGG | 0.580811 | 5.1:-37114805 | MS.gene59159:CDS |
| AAAGGAAGTGGCTAATACAG+TGG | 0.585375 | 5.1:-37116245 | MS.gene59159:CDS |
| GCAACACTGTTACCAATCCA+AGG | 0.587211 | 5.1:-37114917 | MS.gene59159:CDS |
| ATGACGATAGGATCCGGTAC+CGG | 0.587329 | 5.1:-37111820 | MS.gene59159:intron |
| GGATGCAACCCAAGTGGAGA+TGG | 0.587388 | 5.1:-37115279 | MS.gene59159:CDS |
| TCCACTTCAATTAGTTCAGG+AGG | 0.592645 | 5.1:+37114804 | None:intergenic |
| GAATTTCATGACGAGTGTTG+GGG | 0.593604 | 5.1:-37120559 | MS.gene59159:CDS |
| CTTCTCACAAACAGGTCTGT+AGG | 0.594525 | 5.1:+37115800 | None:intergenic |
| GACTTTGATTATTTGAGAGG+CGG | 0.597181 | 5.1:+37115577 | None:intergenic |
| TTCTCAAAATCAACAACAAG+GGG | 0.601453 | 5.1:-37115144 | MS.gene59159:CDS |
| TATGCATTGTGATGTGCCCA+TGG | 0.601584 | 5.1:-37115300 | MS.gene59159:CDS |
| GGATTGGTAACAGTGTTGCT+TGG | 0.601955 | 5.1:+37114921 | None:intergenic |
| GGATCATGAAAATGTGAACA+TGG | 0.602463 | 5.1:-37114895 | MS.gene59159:CDS |
| CAGATGCAGATGTTCTGTAA+TGG | 0.603270 | 5.1:-37115662 | MS.gene59159:CDS |
| TGTGAGACAGCAAAAGTGCA+AGG | 0.608591 | 5.1:-37115962 | MS.gene59159:CDS |
| TCCTAGACCTACATGCATGC+CGG | 0.611121 | 5.1:+37111801 | None:intergenic |
| TCCTGAACTAATTGAAGTGG+AGG | 0.612337 | 5.1:-37114802 | MS.gene59159:CDS |
| AAAACTTCGAGAAAAGGAAG+TGG | 0.613725 | 5.1:-37116257 | MS.gene59159:CDS |
| TTCAGCTAAAACAAGTTCTG+TGG | 0.614788 | 5.1:+37119962 | None:intergenic |
| CATTACCAATCAGCCTGTAA+CGG | 0.616778 | 5.1:-37116095 | MS.gene59159:CDS |
| ATGCAGAGTTCAGTGCATAG+TGG | 0.617607 | 5.1:-37119940 | MS.gene59159:CDS |
| AGCAAGGACTTATTAAAGCG+CGG | 0.619308 | 5.1:-37119368 | MS.gene59159:CDS |
| CAATGCCAAATGCATGATGA+AGG | 0.621689 | 5.1:-37119916 | MS.gene59159:intron |
| GGTTCTCAAAATCAACAACA+AGG | 0.625189 | 5.1:-37115146 | MS.gene59159:CDS |
| AAAAGCAGATGCCATAAGCA+AGG | 0.629423 | 5.1:-37119384 | MS.gene59159:CDS |
| GTTCTCAAAATCAACAACAA+GGG | 0.635425 | 5.1:-37115145 | MS.gene59159:CDS |
| TCCGGTACCGGCATGCATGT+AGG | 0.635500 | 5.1:-37111808 | None:intergenic |
| CAACTCACTCAAAGAGCTCG+AGG | 0.642763 | 5.1:-37114951 | MS.gene59159:CDS |
| GTGAGACAGCAAAAGTGCAA+GGG | 0.643388 | 5.1:-37115961 | MS.gene59159:CDS |
| AGAACTGGTGGTACAAAAGG+AGG | 0.645538 | 5.1:-37115512 | MS.gene59159:CDS |
| GTTCTTGATACAGCTTCTGG+TGG | 0.647696 | 5.1:-37115617 | MS.gene59159:CDS |
| TGAACTACCTCAGCAATCAA+GGG | 0.652240 | 5.1:-37115256 | MS.gene59159:CDS |
| TGACTGATGACGCTTATGAG+TGG | 0.656088 | 5.1:-37115895 | MS.gene59159:CDS |
| AAACCAAGCACCAAAGAAGG+CGG | 0.660498 | 5.1:-37115102 | MS.gene59159:CDS |
| GAAGTAGACAAAGATATGGA+GGG | 0.665041 | 5.1:-37116196 | MS.gene59159:CDS |
| CAACACTGTTACCAATCCAA+GGG | 0.666106 | 5.1:-37114916 | MS.gene59159:CDS |
| TCTCAAGCTAAACATGATGG+AGG | 0.669717 | 5.1:-37114834 | MS.gene59159:CDS |
| AAGACTTCTCGGAGACTATG+GGG | 0.675370 | 5.1:-37116146 | MS.gene59159:CDS |
| ATACATATAATCCAGGCTGG+AGG | 0.691165 | 5.1:-37115205 | MS.gene59159:CDS |
| GCCCATGGATGCAACCCAAG+TGG | 0.693090 | 5.1:-37115285 | MS.gene59159:CDS |
| AGAGGCTCAAAAGAATACAA+GGG | 0.713874 | 5.1:-37115018 | MS.gene59159:CDS |
| AGTGTTCATTTGATTCACTG+GGG | 0.726661 | 5.1:+37115358 | None:intergenic |
| GAGTTGTATGATAGAACTGG+TGG | 0.731579 | 5.1:-37115524 | MS.gene59159:CDS |
| CTTAGCTCAAGAAACCAGAG+AGG | 0.758641 | 5.1:-37115036 | MS.gene59159:CDS |
| TAATACAGTGGAGATCGACA+CGG | 0.764614 | 5.1:-37116233 | MS.gene59159:CDS |
| TCTCAAAATCAACAACAAGG+GGG | 0.774993 | 5.1:-37115143 | MS.gene59159:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.1 | gene | 37111809 | 37120617 | 37111809 | ID=MS.gene59159 |
| chr5.1 | mRNA | 37111809 | 37120617 | 37111809 | ID=MS.gene59159.t1;Parent=MS.gene59159 |
| chr5.1 | exon | 37120538 | 37120617 | 37120538 | ID=MS.gene59159.t1.exon1;Parent=MS.gene59159.t1 |
| chr5.1 | CDS | 37120538 | 37120617 | 37120538 | ID=cds.MS.gene59159.t1;Parent=MS.gene59159.t1 |
| chr5.1 | exon | 37120153 | 37120236 | 37120153 | ID=MS.gene59159.t1.exon2;Parent=MS.gene59159.t1 |
| chr5.1 | CDS | 37120153 | 37120236 | 37120153 | ID=cds.MS.gene59159.t1;Parent=MS.gene59159.t1 |
| chr5.1 | exon | 37119917 | 37120058 | 37119917 | ID=MS.gene59159.t1.exon3;Parent=MS.gene59159.t1 |
| chr5.1 | CDS | 37119917 | 37120058 | 37119917 | ID=cds.MS.gene59159.t1;Parent=MS.gene59159.t1 |
| chr5.1 | exon | 37119354 | 37119513 | 37119354 | ID=MS.gene59159.t1.exon4;Parent=MS.gene59159.t1 |
| chr5.1 | CDS | 37119354 | 37119513 | 37119354 | ID=cds.MS.gene59159.t1;Parent=MS.gene59159.t1 |
| chr5.1 | exon | 37114797 | 37116325 | 37114797 | ID=MS.gene59159.t1.exon5;Parent=MS.gene59159.t1 |
| chr5.1 | CDS | 37114797 | 37116325 | 37114797 | ID=cds.MS.gene59159.t1;Parent=MS.gene59159.t1 |
| chr5.1 | exon | 37111809 | 37111832 | 37111809 | ID=MS.gene59159.t1.exon6;Parent=MS.gene59159.t1 |
| chr5.1 | CDS | 37111809 | 37111832 | 37111809 | ID=cds.MS.gene59159.t1;Parent=MS.gene59159.t1 |
| Gene Sequence |
| Protein sequence |
