AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene051388


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051388.t1 MTR_1g062200 92.090 1340 50 4 1 1339 1 1285 0.0 2397
MS.gene051388.t1 MTR_1g062200 92.082 1263 44 4 1 1262 1 1208 0.0 2251
MS.gene051388.t1 MTR_1g090807 30.831 1252 699 30 6 1153 30 1218 4.01e-131 436
MS.gene051388.t1 MTR_6g014000 87.179 117 15 0 960 1076 349 465 1.72e-57 207
MS.gene051388.t1 MTR_1g100633 29.194 459 262 17 1 443 1 412 7.23e-27 119
MS.gene051388.t1 MTR_1g100633 29.194 459 262 17 1 443 1 412 8.07e-27 119
MS.gene051388.t1 MTR_1g100633 29.194 459 262 17 1 443 1 412 8.98e-27 119
MS.gene051388.t1 MTR_3g073620 36.496 137 81 2 15 150 19 150 1.02e-25 116
MS.gene051388.t1 MTR_5g010520 26.182 550 332 14 1 516 1 510 3.76e-25 114
MS.gene051388.t1 MTR_5g010520 26.182 550 332 14 1 516 1 510 4.28e-25 114
MS.gene051388.t1 MTR_5g010520 23.900 682 397 22 702 1333 449 1058 9.17e-13 73.6
MS.gene051388.t1 MTR_8g097350 25.413 484 283 14 1 442 1 448 6.40e-24 110
MS.gene051388.t1 MTR_8g097350 25.620 484 279 15 1 442 1 445 1.70e-23 108
MS.gene051388.t1 MTR_8g010370 49.462 93 36 5 100 187 134 220 2.13e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene051388.t1 AT1G22060 38.562 153 88 4 1 150 1 150 1.87e-27 122
MS.gene051388.t1 AT1G22060 38.562 153 88 4 1 150 1 150 1.87e-27 122
MS.gene051388.t1 AT5G52280 26.273 491 290 16 1 473 1 437 1.05e-22 105
MS.gene051388.t1 AT5G41140 24.569 464 267 16 1 428 1 417 1.03e-18 93.2
MS.gene051388.t1 AT5G41140 24.464 466 265 17 1 428 1 417 1.13e-18 93.2

Find 198 sgRNAs with CRISPR-Local

Find 0 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAACTGAACCTTCAAATTTC+TGG 0.069264 1.1:-46978068 None:intergenic
CACCGGTGTCTTGCATATTT+TGG 0.070954 1.1:-46975795 None:intergenic
GATTCTCTATTTCTAGTTTA+AGG 0.082921 1.1:-46977673 None:intergenic
AAGGGTCCTGTTGATCTTTC+AGG 0.132731 1.1:-46978647 None:intergenic
CAAGCTCAACATTTGCTTCT+TGG 0.157455 1.1:-46976212 None:intergenic
ATTCCACCTCTGCATATTTA+AGG 0.182023 1.1:-46980155 None:intergenic
TTCAGAGATGGATGGTATTT+TGG 0.182337 1.1:+46977571 MS.gene051388:CDS
TGCTGATTTCAAATTTAAAA+TGG 0.188126 1.1:+46977901 MS.gene051388:CDS
TCAATTTGAAAATGAGATTA+TGG 0.213947 1.1:+46978102 MS.gene051388:CDS
GCCAAATTGGAATCGGCTTT+TGG 0.222360 1.1:+46977785 MS.gene051388:CDS
CACAGTCTCTCCTCCATTGC+AGG 0.229035 1.1:-46976592 None:intergenic
TCCAAAAGCCGATTCCAATT+TGG 0.234836 1.1:-46977786 None:intergenic
ACCATCATTACTAATCTTCT+TGG 0.240885 1.1:-46976892 None:intergenic
CTCAAGTTTCTGCTGTTCTA+TGG 0.245534 1.1:-46976262 None:intergenic
ATCTTCCTCTGTTGGTGATA+TGG 0.252738 1.1:+46975155 MS.gene051388:CDS
TATATTTGACAAAAGATCTT+TGG 0.263920 1.1:-46976775 None:intergenic
TGAGAAGAGTTATTATTAAC+AGG 0.269806 1.1:-46975748 None:intergenic
GGATTCTTCCATAGAAGATT+TGG 0.273767 1.1:+46977241 MS.gene051388:CDS
TGATGTTTCCTGCTGTTATA+AGG 0.275186 1.1:-46978666 None:intergenic
TGTAGGTGATGCAGATCTTT+TGG 0.275812 1.1:+46976623 MS.gene051388:CDS
AGAGCAGTATTGCTCCCTTA+TGG 0.279772 1.1:+46977430 MS.gene051388:CDS
GGAAGAGTTGAGAGATATTC+AGG 0.281278 1.1:+46980113 MS.gene051388:CDS
AGAAGAATTGAAACTGATTA+AGG 0.287044 1.1:+46978405 MS.gene051388:CDS
CTTTAGTTGCAAAGACAAAT+TGG 0.293118 1.1:-46976184 None:intergenic
GATTCATTTGAGAAGCTAAA+TGG 0.300157 1.1:+46977380 MS.gene051388:CDS
ACCATAGTCTCAACTTCTTC+AGG 0.302249 1.1:-46975192 None:intergenic
TGTTTCCTTCTTCACTTGTC+TGG 0.311103 1.1:-46976338 None:intergenic
GGCCATTTGCATGGTTGTTT+CGG 0.319561 1.1:-46980020 None:intergenic
GCCTTCTGATCATCATTAAC+AGG 0.320976 1.1:-46978466 None:intergenic
TTCTCATCTCAAAGCACTTC+AGG 0.324938 1.1:+46972824 MS.gene051388:CDS
CAGTCTCTCTTTCTCAGTAT+TGG 0.325818 1.1:-46978149 None:intergenic
TATATGAAGTTCAACTTAAC+AGG 0.330514 1.1:+46978972 MS.gene051388:CDS
AATCAGCAAGCTCAGTTGTT+AGG 0.331769 1.1:-46977886 None:intergenic
CTATGGTTTCTTCCAGCTCC+TGG 0.336965 1.1:-46976245 None:intergenic
TTGCAGGCAGAAAGTCTTCC+TGG 0.343418 1.1:+46975583 MS.gene051388:intron
AGCAATTGAGTCTTTGATAC+TGG 0.343908 1.1:-46978911 None:intergenic
ACGTGCTGATAAAGCCAAAT+TGG 0.355795 1.1:+46977772 MS.gene051388:CDS
GAGCAGTATTGCTCCCTTAT+GGG 0.358294 1.1:+46977431 MS.gene051388:CDS
CCTATTGCTGCGAACTTGAT+TGG 0.365126 1.1:-46978592 None:intergenic
TCTGTTGTCTCTGTAGAAAA+TGG 0.366879 1.1:+46974299 MS.gene051388:CDS
CAAGTAAAGAAAAGGAGATT+GGG 0.387398 1.1:+46977033 MS.gene051388:CDS
TCAGTTTCAATTCTTCTTCA+AGG 0.388382 1.1:-46978399 None:intergenic
TCAAGTAAAGAAAAGGAGAT+TGG 0.396372 1.1:+46977032 MS.gene051388:CDS
GATGTTTCCTGCTGTTATAA+GGG 0.399357 1.1:-46978665 None:intergenic
ACCTGAAGAAGTTGAGACTA+TGG 0.400749 1.1:+46975191 MS.gene051388:CDS
CCAATCAAGTTCGCAGCAAT+AGG 0.402605 1.1:+46978592 MS.gene051388:CDS
GGAGAAGGCTGCATCAGAAT+TGG 0.404436 1.1:+46978255 MS.gene051388:CDS
GCAAACAAATTCTCATTTGA+AGG 0.410235 1.1:+46975053 MS.gene051388:CDS
CCCTCAACCTGGCTCCCATA+AGG 0.411917 1.1:-46977445 None:intergenic
TAAAGGAAACACAATTTCAT+TGG 0.415707 1.1:+46977273 MS.gene051388:CDS
CCGCTAAATAAGTGCAATCA+TGG 0.416997 1.1:+46974637 MS.gene051388:CDS
GCTGGCTATGGTGCAAGAAC+TGG 0.422369 1.1:+46976410 MS.gene051388:CDS
AAGGCAGAGAATACATCATT+TGG 0.422493 1.1:+46978214 MS.gene051388:CDS
TCTGTGTCATTCTTTAAAGA+TGG 0.422995 1.1:-46978621 None:intergenic
AGTATTGAATAAGAAAGTTC+AGG 0.424150 1.1:+46976656 MS.gene051388:CDS
ATCAAGTTTCAAAGCTAAAC+AGG 0.424335 1.1:+46978440 MS.gene051388:CDS
TATTAACAGGGTAGTCGTAA+TGG 0.426861 1.1:-46975735 None:intergenic
CCCTTATGGGAGCCAGGTTG+AGG 0.427765 1.1:+46977444 MS.gene051388:CDS
AGCAAAGTCACGGTGCGAAA+TGG 0.428476 1.1:+46974341 MS.gene051388:CDS
AACAGTTTGTCCCACCCCTT+TGG 0.428541 1.1:-46974272 None:intergenic
CTCAACTTCTTCAGGTGATA+AGG 0.429179 1.1:-46975184 None:intergenic
ATCATTAAGATCTGGAATCC+TGG 0.429489 1.1:+46974552 MS.gene051388:CDS
CATGATTGCACTTATTTAGC+GGG 0.430592 1.1:-46974636 None:intergenic
TCCCTTTCCTGTGGAATCCT+CGG 0.433917 1.1:-46975635 None:intergenic
TGAGCTTGTTTCTGTTCTCC+AGG 0.434229 1.1:+46976227 MS.gene051388:CDS
TGTTTCTGTTCTCCAGGAGC+TGG 0.440644 1.1:+46976233 MS.gene051388:CDS
GCATCTCCGCAATCTTCTCT+TGG 0.441780 1.1:-46977208 None:intergenic
ACTGCATAAGCCTTTCTTCA+AGG 0.444906 1.1:-46978303 None:intergenic
ATTAACAGGGTAGTCGTAAT+GGG 0.448727 1.1:-46975734 None:intergenic
GCCAAGAAGATTAGTAATGA+TGG 0.453336 1.1:+46976891 MS.gene051388:CDS
TTGCAAAGACAAATTGGCAT+TGG 0.454395 1.1:-46976178 None:intergenic
AAAGATGGAAGGTCTGGAAA+TGG 0.457689 1.1:+46975978 MS.gene051388:CDS
AAACAAATTATCTGCTAAAG+AGG 0.458484 1.1:+46976521 MS.gene051388:CDS
CCTCAACCTGGCTCCCATAA+GGG 0.460421 1.1:-46977444 None:intergenic
AAAGAAGTTTGCTTTGATGC+TGG 0.460831 1.1:+46977517 MS.gene051388:CDS
CTTATTGAATCAGATGCAAA+TGG 0.463804 1.1:+46977628 MS.gene051388:CDS
GCCGAGGATTCCACAGGAAA+GGG 0.466600 1.1:+46975634 MS.gene051388:CDS
TTCAGCAGCCTATGATGAAA+AGG 0.467557 1.1:+46977709 MS.gene051388:CDS
TTCACTTGATTCCCTCAACC+TGG 0.468793 1.1:-46977456 None:intergenic
GAAGTGACTGTCAAGTCAAA+TGG 0.470428 1.1:+46975102 MS.gene051388:CDS
TTGAACTTCATATATGTCAA+TGG 0.471061 1.1:-46978963 None:intergenic
CAACTCATCAAGTAAAGAAA+AGG 0.473575 1.1:+46977025 MS.gene051388:CDS
AGAAATCCTGAAAGATCAAC+AGG 0.475378 1.1:+46978641 MS.gene051388:CDS
TGCATCTGAACTCGCATAGT+TGG 0.475884 1.1:-46974596 None:intergenic
CAGTTTCAATTCTTCTTCAA+GGG 0.476018 1.1:-46978398 None:intergenic
GAGCAGTTAACATTGTCATC+AGG 0.477398 1.1:+46976048 MS.gene051388:CDS
TGAAGAAAGGCTTATGCAGT+TGG 0.481774 1.1:+46978306 MS.gene051388:CDS
CCTTGGCTTCCAACTCACTT+AGG 0.483465 1.1:-46977070 None:intergenic
GGCCGAAACAACCATGCAAA+TGG 0.485609 1.1:+46980018 MS.gene051388:CDS
GCAAAGACCGATTCAAAAGA+TGG 0.485838 1.1:+46976744 MS.gene051388:CDS
ATGAACGCCAGAAAGCTGTT+GGG 0.486176 1.1:+46975913 MS.gene051388:CDS
GGATGAATCCAGAAATTTGA+AGG 0.488338 1.1:+46978060 MS.gene051388:CDS
AATACAATCATCAGTCTCCT+TGG 0.488486 1.1:-46974423 None:intergenic
ATTGCTCCCTTATGGGAGCC+AGG 0.490383 1.1:+46977438 MS.gene051388:CDS
CTGCATAAGCCTTTCTTCAA+GGG 0.493954 1.1:-46978302 None:intergenic
TAACAGGGATCATTAAGATC+TGG 0.494826 1.1:+46974544 MS.gene051388:intron
TACTAACTGTGGCCTCTCCC+AGG 0.496498 1.1:-46974570 None:intergenic
GAAGAATTTAACTTCAGAGA+TGG 0.498471 1.1:+46977559 MS.gene051388:CDS
CCTTATGGGAGCCAGGTTGA+GGG 0.500273 1.1:+46977445 MS.gene051388:CDS
ATATTTGAGGCAGCAAAAGT+TGG 0.501631 1.1:+46977403 MS.gene051388:CDS
GCAAGAACTGGAAGAGGCGT+TGG 0.504945 1.1:+46976422 MS.gene051388:CDS
TAATGTTAGCAGGTACCAAA+GGG 0.506277 1.1:+46974257 MS.gene051388:intron
AGAAGCTAAATGGATATTTG+AGG 0.507658 1.1:+46977390 MS.gene051388:CDS
AGTGATGGACAGAGCCGGAC+GGG 0.510231 1.1:+46975676 MS.gene051388:CDS
TCAAGTGATAGAATTGAGTT+CGG 0.515516 1.1:+46972798 MS.gene051388:CDS
TGGACGAAAGATGTCAAGCT+TGG 0.516980 1.1:+46978234 MS.gene051388:CDS
TGATAAAGCCAAATTGGAAT+CGG 0.519468 1.1:+46977778 MS.gene051388:CDS
TCTTTCCAGACAAGTGAAGA+AGG 0.521847 1.1:+46976333 MS.gene051388:CDS
TTGAATCTTGTCTTCCCGTC+CGG 0.522115 1.1:-46975690 None:intergenic
CAAGAACATCCCTTGAAGAA+AGG 0.522981 1.1:+46978293 MS.gene051388:CDS
TTATTTAGCGGGATTGAAAG+TGG 0.524587 1.1:-46974625 None:intergenic
CTGTAATTTGATACAGAACC+AGG 0.530049 1.1:-46975601 None:intergenic
TCTCAAGCTCATTGTTGCAA+TGG 0.530061 1.1:+46974445 MS.gene051388:CDS
TTCAGACTTCAAGCATAATG+AGG 0.531055 1.1:-46978176 None:intergenic
CCATGATTGCACTTATTTAG+CGG 0.533424 1.1:-46974637 None:intergenic
TCATTAAGATCTGGAATCCT+GGG 0.533611 1.1:+46974553 MS.gene051388:CDS
AACAGGACCCTTATAACAGC+AGG 0.533976 1.1:+46978658 MS.gene051388:CDS
TCAGCTTGAATAAAAGCTCA+AGG 0.535155 1.1:-46976716 None:intergenic
GGATACTTCAAGCAAAGCAT+TGG 0.535535 1.1:-46977744 None:intergenic
TTCAAGAGATAATTTGTCCA+AGG 0.536501 1.1:+46974406 MS.gene051388:CDS
TGCGGAGATGCAGTCTGAGA+TGG 0.536596 1.1:+46977220 MS.gene051388:CDS
CTGTCCATCACTCATGTATG+TGG 0.536686 1.1:-46975665 None:intergenic
GAAAGTTCAGGAACTTGAGA+TGG 0.536733 1.1:+46976668 MS.gene051388:CDS
GATGAACGCCAGAAAGCTGT+TGG 0.539056 1.1:+46975912 MS.gene051388:CDS
CGCTAAATAAGTGCAATCAT+GGG 0.541016 1.1:+46974638 MS.gene051388:CDS
CTAATGTTAGCAGGTACCAA+AGG 0.542601 1.1:+46974256 MS.gene051388:intron
GAGACTGTGTCAAGAAATGT+AGG 0.543799 1.1:+46976606 MS.gene051388:CDS
AACTGATGAAACATCTGAGA+TGG 0.545150 1.1:+46976989 MS.gene051388:CDS
AATAGGAATCATATAGTGAA+GGG 0.548119 1.1:+46977599 MS.gene051388:CDS
AGCCGAGGATTCCACAGGAA+AGG 0.549503 1.1:+46975633 MS.gene051388:CDS
ACGGGAAGACAAGATTCAAC+CGG 0.549619 1.1:+46975694 MS.gene051388:CDS
AGACACAAGTGAAGAGCTAC+GGG 0.550051 1.1:+46975870 MS.gene051388:CDS
AAATGGCCTAGTAAAATCAA+TGG 0.552140 1.1:+46980035 MS.gene051388:CDS
AGTGTTGAATCTTCCTCTGT+TGG 0.554660 1.1:+46975147 MS.gene051388:CDS
AAAGATGTCAAGCTTGGAGA+AGG 0.556998 1.1:+46978240 MS.gene051388:CDS
GGCTTTATCAGCACGTAATG+TGG 0.558296 1.1:-46977765 None:intergenic
AACTCAGCCGAGGATTCCAC+AGG 0.558753 1.1:+46975628 MS.gene051388:CDS
AAGACACAAGTGAAGAGCTA+CGG 0.560001 1.1:+46975869 MS.gene051388:CDS
CCTAAGTGAGTTGGAAGCCA+AGG 0.560218 1.1:+46977070 MS.gene051388:CDS
CTGCATATTTAAGGCTCATG+TGG 0.561749 1.1:-46980146 None:intergenic
GATGCAAATGGAGAAGATTG+TGG 0.563296 1.1:+46977640 MS.gene051388:CDS
ACCTGTTAATGATGATCAGA+AGG 0.563385 1.1:+46978465 MS.gene051388:CDS
TTGGAAGATTCAATATCTCA+AGG 0.563812 1.1:+46976096 MS.gene051388:CDS
TGAACTATGTGAAGATCTGA+AGG 0.565445 1.1:+46978195 MS.gene051388:CDS
TGTTTAAGCTTCACAAGCAT+AGG 0.565852 1.1:+46972766 MS.gene051388:CDS
TACTTGATGAGTTGACCTCA+AGG 0.566693 1.1:-46977016 None:intergenic
TTCTCCACATACATGAGTGA+TGG 0.568481 1.1:+46975661 MS.gene051388:CDS
ATACGAAAGACAGCAATACA+TGG 0.568648 1.1:+46978039 MS.gene051388:CDS
AAGTCAACAAATAGAACAGT+TGG 0.569407 1.1:+46976368 MS.gene051388:CDS
TCAACAAATAGAACAGTTGG+AGG 0.572016 1.1:+46976371 MS.gene051388:CDS
TATGGTGCAAGAACTGGAAG+AGG 0.577822 1.1:+46976416 MS.gene051388:CDS
TCACAGGTGGAAAGTGAGCA+TGG 0.578671 1.1:+46978851 MS.gene051388:intron
TTGTTCAAGATGATAAACCT+TGG 0.581068 1.1:-46977087 None:intergenic
ATTCTACATATGCTGTTGAA+AGG 0.581578 1.1:-46976002 None:intergenic
TGAACGCCAGAAAGCTGTTG+GGG 0.584160 1.1:+46975914 MS.gene051388:CDS
AAGAGACGCAAGATGTGCCC+AGG 0.584804 1.1:+46978345 MS.gene051388:CDS
GGAGAAATTTCCCTTTCCTG+TGG 0.586809 1.1:-46975644 None:intergenic
ATTTAAAATGGAAATGCTGA+TGG 0.589431 1.1:+46977913 MS.gene051388:CDS
TACGGGCAGAAGCAAAGATG+TGG 0.598071 1.1:+46975887 MS.gene051388:CDS
AAATAGGAATCATATAGTGA+AGG 0.598258 1.1:+46977598 MS.gene051388:CDS
TCCTGCAGGTCATCATCTCA+AGG 0.603501 1.1:+46979997 MS.gene051388:intron
TGCAAAGTCAAGCAAAGTCA+CGG 0.610444 1.1:+46974331 MS.gene051388:CDS
GAGCCTTAAATATGCAGAGG+TGG 0.611103 1.1:+46980152 MS.gene051388:CDS
TCTAAATCAGCACAAGAAGT+CGG 0.611494 1.1:+46976942 MS.gene051388:CDS
TGATGATTACTGTGAAAGAG+TGG 0.612656 1.1:+46977484 MS.gene051388:CDS
AATTTAACTTCAGAGATGGA+TGG 0.613832 1.1:+46977563 MS.gene051388:CDS
AAAATTGTCAGAGCTGGTGG+AGG 0.614393 1.1:+46977946 MS.gene051388:CDS
AAGTAAAGAAAAGGAGATTG+GGG 0.616752 1.1:+46977034 MS.gene051388:CDS
AAGATCTGGAATCCTGGGAG+AGG 0.617399 1.1:+46974558 MS.gene051388:CDS
GTTAGCAGGTACCAAAGGGG+TGG 0.618021 1.1:+46974261 MS.gene051388:intron
ACAAGATAAACTTCAACTAG+AGG 0.620249 1.1:+46977106 MS.gene051388:CDS
GAGTGATGGACAGAGCCGGA+CGG 0.623508 1.1:+46975675 MS.gene051388:CDS
ATCTGAGATGGAAAACCTTG+AGG 0.623817 1.1:+46977001 MS.gene051388:CDS
ACATGAGTGATGGACAGAGC+CGG 0.627982 1.1:+46975671 MS.gene051388:CDS
CTTCTTATAAGATGATGCAC+CGG 0.628745 1.1:-46975812 None:intergenic
TCATCTTATAAGAAGACCAA+TGG 0.630420 1.1:+46975820 MS.gene051388:CDS
TTAGCAGGTACCAAAGGGGT+GGG 0.638356 1.1:+46974262 MS.gene051388:intron
AGAACTTGTAATGAAGCTCA+AGG 0.638966 1.1:+46980188 MS.gene051388:CDS
ACGTACAAAATCAATGCTAG+AGG 0.640837 1.1:+46980092 MS.gene051388:CDS
ACTTCAACTAGAGGAGCACA+TGG 0.641782 1.1:+46977115 MS.gene051388:CDS
AGAGTCCATATCACCAACAG+AGG 0.642774 1.1:-46975160 None:intergenic
TCCCAAAATATGCAAGACAC+CGG 0.646873 1.1:+46975793 MS.gene051388:CDS
ACGGGCAGAAGCAAAGATGT+GGG 0.648492 1.1:+46975888 MS.gene051388:CDS
GAACGCCAGAAAGCTGTTGG+GGG 0.651959 1.1:+46975915 MS.gene051388:CDS
GATGATTACTGTGAAAGAGT+GGG 0.655984 1.1:+46977485 MS.gene051388:CDS
GAGAAGAGTTATTATTAACA+GGG 0.657392 1.1:-46975747 None:intergenic
CATGAGCCTTAAATATGCAG+AGG 0.671496 1.1:+46980149 MS.gene051388:CDS
TGCGAAATGGAAGTTGTCAG+TGG 0.678162 1.1:+46974354 MS.gene051388:CDS
ATAGTTGGTCATACTAACTG+TGG 0.684689 1.1:-46974581 None:intergenic
TTCAGAAGACATGCTCCCTG+AGG 0.688861 1.1:+46976863 MS.gene051388:CDS
GAAGAATGTGAATATCTCAG+AGG 0.698361 1.1:+46977308 MS.gene051388:CDS
ACTTGTAATGAAGCTCAAGG+TGG 0.701378 1.1:+46980191 MS.gene051388:CDS
AAGACCGATTCAAAAGATGG+AGG 0.703694 1.1:+46976747 MS.gene051388:CDS
TTACAGCTATAACTCAGCCG+AGG 0.705059 1.1:+46975618 MS.gene051388:CDS
CAGCAGGAAACATCAGACTG+AGG 0.735534 1.1:+46978674 MS.gene051388:CDS
TCAACTAGAGGAGCACATGG+AGG 0.736506 1.1:+46977118 MS.gene051388:CDS
AAGGCTCCAAGAGAAGATTG+CGG 0.741014 1.1:+46977202 MS.gene051388:CDS
AATGTTAGCAGGTACCAAAG+GGG 0.753582 1.1:+46974258 MS.gene051388:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content


Chromosome Type Strat End Strand Name
chr1.1 gene 46972765 46980242 46972765 ID=MS.gene051388
chr1.1 mRNA 46972765 46980242 46972765 ID=MS.gene051388.t1;Parent=MS.gene051388
chr1.1 exon 46972765 46972845 46972765 ID=MS.gene051388.t1.exon1;Parent=MS.gene051388.t1
chr1.1 CDS 46972765 46972845 46972765 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46974269 46974466 46974269 ID=MS.gene051388.t1.exon2;Parent=MS.gene051388.t1
chr1.1 CDS 46974269 46974466 46974269 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46974550 46974672 46974550 ID=MS.gene051388.t1.exon3;Parent=MS.gene051388.t1
chr1.1 CDS 46974550 46974672 46974550 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46974918 46974955 46974918 ID=MS.gene051388.t1.exon4;Parent=MS.gene051388.t1
chr1.1 CDS 46974918 46974955 46974918 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46975038 46975212 46975038 ID=MS.gene051388.t1.exon5;Parent=MS.gene051388.t1
chr1.1 CDS 46975038 46975212 46975038 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46975589 46978495 46975589 ID=MS.gene051388.t1.exon6;Parent=MS.gene051388.t1
chr1.1 CDS 46975589 46978495 46975589 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46978573 46978695 46978573 ID=MS.gene051388.t1.exon7;Parent=MS.gene051388.t1
chr1.1 CDS 46978573 46978695 46978573 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46978857 46978993 46978857 ID=MS.gene051388.t1.exon8;Parent=MS.gene051388.t1
chr1.1 CDS 46978857 46978993 46978857 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
chr1.1 exon 46980005 46980242 46980005 ID=MS.gene051388.t1.exon9;Parent=MS.gene051388.t1
chr1.1 CDS 46980005 46980242 46980005 ID=cds.MS.gene051388.t1;Parent=MS.gene051388.t1
Gene Sequence

>MS.gene051388

ATGTTTAAGCTTCACAAGCATAGGTCTGCGAAATCAAGTGATAGAATTGAGTTCGGAATTTCTCATCTCAAAGCACTTCAGGTTACTTCTTTCACCTTTTCAATTTCAATTTCGTCTTGTTCTTCCTAGTTTTGATTTACGTTGATTGATCAATGAACGGTGATGTTATTTTGATTATGTAACCGATCATAATTTGGAAATTAGAAATGAAAAACGTGGAATATGCTGAGTTTGGAGCAAAGGAATTACGGTTTACATTGAGTTGTAACGTGTTTCAATTGAACTTTTATGAACTCGAAGGTTCAAATCGTTGTGTTTTGTTATGAATAGCTGCATTAAAATTGTGGTTTCTGTTTTGATGGAATGCAGAACAATGCTTCATGCATATTCAGTTATAACTTGTAAGGACCAAAAAAATAGAACAGAACCAAATCATAAAGTGACTTAAGTGGATCGTTTAAATGGTTAAAGATTAAAAGGTTTTATATATTAAGTGCTTACAGCATAATCAATTCGCATATAAGTGCTTGTATGCATGTAAGTTATTTCTATAATAATTGATAAAGTCAAACTGTTTTCATATAAGCTATAACTTGTTAGCATAAGCTAACCTGGAGAGCTTACGAGAATCAGATGAAAATAACTTATGGACATGTCATTAGTTGTTTCCACAAGCTCTCCGATATAAGGCTTGTTTGGATTGACTCATTTGAGCTTATCTATTGGCATAAGTTTTGTGAGACTTTTTGGAAGAACTTAAGAAAACGGCGTATGACATTGTTCATAAGTTTTTTTCAGCTTATTTTCATAAGTTTTTCAAGATAGTTAATGAAAATAACTTATAAATTATACGAAAATAATTTAAATTTATTTTATCTTTTGCTGTAGAAATAGCTTATACATAATAAATGATAAAATCAAAAATCAAACTGTTTCCATATAAGATATAACCTCTTATCATAAGCTATCCTGGAGAGCTTACAGGAATCAGCTGAAAATAACTTATGGACACGTCATAAGCTGTTTTCATAAGCTCTTCCCATATTAGGCTTGTTTGGATTGACTCGTTTGAGCTTATCTATTGGTGTAAGTTTTGTGAGACTTTTTGGAAGAACTTAAGAAAACAACTTATGACATTGTTCATAAGCTGTTTTCAACTTACTTTCGTAAGTTCTTCAAGATAGTTTACAAAAATAACTTAAACGAAACTAATTTAAATTTATTTTATCTTTTGCTGTAGAAATAGCTTATGCATAACGCATATCATGCTAAGTACTTGTGCTATAAGCCGCAAATAAGCTATTTATACAAACATTCTTATAGTCTAGGTTCTGTGTGAGTAGATAAGCTCAAATATACTAATTCAAGGCCTAGGCTTAAATTTTAATTTAGAACTGCATAATCCAAATGCTTTTATGTTTGAAATGAAATTCTGTGTGGCCTACAAAAAGAAAGGGCTGATTGTGTAAAATATCAAATGCTAATTGAATTCTAATGTTAGCAGGTACCAAAGGGGTGGGACAAACTGTTTGTTTCTGTTGTCTCTGTAGAAAATGGTAAAACAATTGCAAAGTCAAGCAAAGTCACGGTGCGAAATGGAAGTTGTCAGTGGTCTGATACTTTTGCAGAATCTATATGGTTTTCAAGAGATAATTTGTCCAAGGAGACTGATGATTGTATTCTCAAGCTCATTGTTGCAATGGTACTGCTATCACTATTGCTGCTTCTTTTACTATTATGCATTGCAGTCCTTTTGCTGTTAACTTTATCAGTTTGAAATAACAGGGATCATTAAGATCTGGAATCCTGGGAGAGGCCACAGTTAGTATGACCAACTATGCGAGTTCAGATGCAGCTGTTCCACTTTCAATCCCGCTAAATAAGTGCAATCATGGGACAGTTTTGAATGTGAGTTAGACTACTGAAAACTATGTATTATGTGCATAAAAGGCATTTTCTGTCAAATTTGAGGAAAAATTTAACACTGAAAATCTGAAAAATAAAAGACTTCATGCTTAAAAATATATGGTATTATGTGTATAGTTAGATATAGTCAGATAGATAGATATAAACATATGTATTTAGGTAGGAATGCTATTGCAGAAAAATACCATTGAACAGAGTTTGAAATTCAGTGGTTATGTATTTTGCAGGTAACAGTGCAGTGCCTTACACCAAGAAAAAAACCCAGGTTTGTATCGAAGGGTGATCTTTTATATAATAATTATAATGCCTATTATTACATTAAATAGTGATCTCTTGCTTATTTTCAGGGATCAAGAATCAAGGCAAACAAATTCTCATTTGAAGGCTATGATTATGAGTGAAAATAATCATGAAGTGACTGTCAAGTCAAATGGATCTGATTGTTCATATGTACAGAGTGTTGAATCTTCCTCTGTTGGTGATATGGACTCTACCTTATCACCTGAAGAAGTTGAGACTATGGTAAAATTGCAACATTTTTCCTATCTTCAGTGCTCTATTGTACATATGGTTCAAAATTCCTGTCCATGCATGCATACTGGTACATAATAATTAATGTGTCTATAACTATATTGCATCCAGTTAGTAACACCTGTAGCCTTATGTATGCAAACACTGCTTTTTTTGAGATAATTTTGAGTGGAGATGGTAACTGCATTTCATCCTTTGGGTCCTTAAAGTAATTCATTGTACAGAGATGTCTTCAATCAGGGTCTAAGAAAAAAAAGTATTTCTTTATGCAGAGTTATCAGCTTGCACATCTCCATGGTAGTGACATAATTCACTATTAGTCTGTCTGTCTTTATCATGATACTAACACTATGTACCTTGGTTGCAGGCAGAAAGTCTTCCTGGTTCTGTATCAAATTACAGCTATAACTCAGCCGAGGATTCCACAGGAAAGGGAAATTTCTCCACATACATGAGTGATGGACAGAGCCGGACGGGAAGACAAGATTCAACCGGTTCCCAGAAAAGTGTATCCCATTACGACTACCCTGTTAATAATAACTCTTCTCAGTCGAATCGTTCATCATTTAATTCCCAAAATATGCAAGACACCGGTGCATCATCTTATAAGAAGACCAATGGTTCTAATAAAAGTCTTGAAGCTACAGAAGACACAAGTGAAGAGCTACGGGCAGAAGCAAAGATGTGGGAGATGAACGCCAGAAAGCTGTTGGGGGACTTGGAGATGTTGAGGACAGAATTCTCAGATCAATCCAAAAAGATGGAAGGTCTGGAAATGGACCTTTCAACAGCATATGTAGAATGTGATAGTTTGAAAAAAGAAGTTGAGCAGTTAACATTGTCATCAGGAGATCCAATAGTGAGACAAAAAACTTTGGAAGATTCAATATCTCAAGGTGAAAGTATTCCAGAAATTGAAAACGCTCTAAAAGATGAATTAAAGTTTCAGAAAGAATCCAATGCCAATTTGTCTTTGCAACTAAAGAAGAGCCAAGAAGCAAATGTTGAGCTTGTTTCTGTTCTCCAGGAGCTGGAAGAAACCATAGAACAGCAGAAACTTGAGATAGAAAACCTTTCATCATTACCCTCAAAACTCAGTGCTCTCGAGAAATCTTTCCAGACAAGTGAAGAAGGAAACATGATCTTAAGTCAACAAATAGAACAGTTGGAGGAATCAAAGAAAAATCTGCTGGCTATGGTGCAAGAACTGGAAGAGGCGTTGGAGAATAAAATGCAAGACATTGAACATGAAAAGATTCCAAACAGAAAATCAATTCAAGATATTGAAATGAAATATGAAAACAAATTATCTGCTAAAGAGGAAGAAATTTCAAGTTTGAAAGCAAGACTGTTAGAATCTGTCCCAAAAACCTGCAATGGAGGAGAGACTGTGTCAAGAAATGTAGGTGATGCAGATCTTTTGGAACAAATCGAAGTATTGAATAAGAAAGTTCAGGAACTTGAGATGGACTGTAATGAACTGACAAACGAAAACCTTGAGCTTTTATTCAAGCTGAAAGAAGCAAAGACCGATTCAAAAGATGGAGGTGCATCCAAAGATCTTTTGTCAAATATATACAAAGATCAATCATTTTCTAGCTCTGAGTCTGTAGCAAGCAACAATTTATTTAGAATATTTCATTCAGAAGACATGCTCCCTGAGGAAAATGCCAAGAAGATTAGTAATGATGGTCATATTTCAATTCGAGAGCTTGAGACATCTAAATCAGCACAAGAAGTCGGAATCACAGATCTGAATAATGAACTAACTGATGAAACATCTGAGATGGAAAACCTTGAGGTCAACTCATCAAGTAAAGAAAAGGAGATTGGGGTTCTGAAAAAGCTCCTAAGTGAGTTGGAAGCCAAGGTTTATCATCTTGAACAAGATAAACTTCAACTAGAGGAGCACATGGAGGACAAGACAAACGAACAAGAGTCTCAATTATCAGAACTAGAGAACGCAAAAAATCAATCTGCAAGGCTCCAAGAGAAGATTGCGGAGATGCAGTCTGAGATGGATTCTTCCATAGAAGATTTGGAACAAAAACTAAAGGAAACACAATTTCATTGGTCAGAAGCACAAGAAGAATGTGAATATCTCAGAGGAGAAAATCAGCAGTTACAAATTACCATTGAAAATCTTGAAGAAGAATGTGATTCATTTGAGAAGCTAAATGGATATTTGAGGCAGCAAAAGTTGGAGTTAGAGCAGTATTGCTCCCTTATGGGAGCCAGGTTGAGGGAATCAAGTGAAAGATTTGATGATTACTGTGAAAGAGTGGGACTCCTAGAAAAGAAGTTTGCTTTGATGCTGGAAGAGATTACATCAAAAGAGAAGAATTTAACTTCAGAGATGGATGGTATTTTGGATGAAAATAGGAATCATATAGTGAAGGGTCAAAGCTTATTGAATCAGATGCAAATGGAGAAGATTGTGGAAATTCAGAACCTTAAACTAGAAATAGAGAATCTCAGTTTGAAACTTTCAGCAGCCTATGATGAAAAGGAGAGAATAGCTTCCAATGCTTTGCTTGAAGTATCCACATTACGTGCTGATAAAGCCAAATTGGAATCGGCTTTTGGAGAAGTTCAATCTGAAGTGATTTTGTCGAAGAATGAGGTTAATGTGATGCAGACTGAATATAAACAGAAGTTGAAAGACCTAACAACTGAGCTTGCTGATTTCAAATTTAAAATGGAAATGCTGATGGCTGAACATGAAAAATTGTCAGAGCTGGTGGAGGACTACAAATCGAGAGAACTGAAATTCAAAAGCACTATGAATTCCCTTGAATCAAAACTTACAGACACTGAATACGAAAGACAGCAATACATGGATGAATCCAGAAATTTGAAGGTTCAGTTGCAGCAGACTTGTCAATTTGAAAATGAGATTATGGCTCTCAAGAATGAGCTCAACACTTCCAATACTGAGAAAGAGAGACTGAAAGCCTCATTATGCTTGAAGTCTGAACTATGTGAAGATCTGAAGGCAGAGAATACATCATTTGGACGAAAGATGTCAAGCTTGGAGAAGGCTGCATCAGAATTGGAGCACTGCAAGAGAACAAGAACATCCCTTGAAGAAAGGCTTATGCAGTTGGAAAATGACTTGAATGCAAGAGACGCAAGATGTGCCCAGGAAAAATCTAAGCTTCAGGAAAAAGCTCAGGCCCTTGAAGAAGAATTGAAACTGATTAAGGAACAAAAGCGAAATCAAGTTTCAAAGCTAAACAGGAAACCTGTTAATGATGATCAGAAGGCCTCAAAAGTTAGTGTCTCTTTTTCAGTAATGGCATGATATCATTGTGATGGCACAACTAATATTTTCTCTCTTTCATTTATCAGAATTCTATTATTAAGAATACCAATCAAGTTCGCAGCAATAGGAAAAAGCCATCTTTAAAGAATGACACAGAAATCCTGAAAGATCAACAGGACCCTTATAACAGCAGGAAACATCAGACTGAGGTGATATGTTTTGAATTTTTCTTATTTTGTTTTACCTCCTTGTCAAAGGTTACCAAGTATATTTTGTGGCTTCAGTGTTGCGGCTCAAAGAGATCATGTCAAATAATTGCACTCTAACTGGAAATTAAATATTTTTGTTTGTCTCACCTTTTTCTTCACAGGTGGAAAGTGAGCATGGACTTCTTGATGAAAATGTTCATATAGTTGAAGTAGAACCAGTATCAAAGACTCAATTGCTTGAGACTGCAGTAGAAAAAGCAAAAGAAGCCATTGACATATATGAAGTTCAACTTAACAGGTCAGAGGATCACATTGCATGTCTTCAAAGTAAACACCTAAAAGCTTTTAGTCTGCTTGTATGACTTGTTATTCTGTTTCTGCTATTATTTTATTTTGAACTTTGCAGACAATTACAAAAACCTTTATCACTAGGTGGGTTATTTTGAATCACTTTAAGAGGATATTTCCGATCTCTTGAAAGAAAGGATGTTTGAGATTGGAATATATTAAGACACTTGTAGTTGTACAAATTAGGACAAATTTACAAGTATGAAATTGCTTATGACAATTCTAGCTTATTAGGTATATGTCTGTCCAGAATGTTTAAGGTTAAGCCAATAGGCTATGGGGTATTTTGCTTGCAGCTATCGTTATCAGGTAAAAGCACCATGTAAAAGTTTGAAAAGTAAAAGAAAATGTGAATTACAAACGATGATGCCAAATTTGTGATTAATTATCTCTTAGTATGGTTTTCTACTTTCCCCAGTAGAAAAACTTATCTAAAAGGAACTTTTTAGAGCCTTAACAATGGAGTTTGGGAAAGAAAAAAAAAAGGAACTGTGATTTCAGTCTTCCCTCAATGTCCAAGACCAGTCTACCAAATAATGTCTAGTTCCTCCATAAATGATTGTGTTTTTTACATAAACAACTATAGGATCCGATTTTTATTTGGTTCAGTTGATTGTTAGTGAGGCTTGTGTTTTATTCTCTTTAGCAATTGGTGGGGTTTAGAACTAAGTTTGATCGACACAGTCGAAGTACACATGGATAATTCATTTAGGGATATCAGAAGAGCTGTGGTAACTCTGCTTCCAACTATTTAAATCCAATTATAAAGCAGCAAGGTATATCCATGTGATACCTTTAGTTTAGGTTGGCGTCGACCTATAAATCAGGATTGCAGGAATTTGAAACATCAGAGAAAAAAACCTGCTTAAGCCATTTGTATTATACCTTTGATTTTAGGTCATCCGTTATTGCTCTACGAAGTCATCTGTGTTATAAAATTCCTTGTGTTTTTATCCTGCAGGTCATCATCTCAAGGCCGAAACAACCATGCAAATGGCCTAGTAAAATCAATGGCTGAAGAAGAACTAGTGACAAAAGAAAAGTTTGAACGTACAAAATCAATGCTAGAGGAAGAGTTGAGAGATATTCAGGATCGTTACTTCCACATGAGCCTTAAATATGCAGAGGTGGAATCTCAGCGTGAAGAACTTGTAATGAAGCTCAAGGTGGCTAAAAGCAAAAAAGGATGGCTCTCATAG

Protein sequence

>MS.gene051388.t1

MFKLHKHRSAKSSDRIEFGISHLKALQVPKGWDKLFVSVVSVENGKTIAKSSKVTVRNGSCQWSDTFAESIWFSRDNLSKETDDCILKLIVAMGSLRSGILGEATVSMTNYASSDAAVPLSIPLNKCNHGTVLNVTVQCLTPRKKPRDQESRQTNSHLKAMIMSENNHEVTVKSNGSDCSYVQSVESSSVGDMDSTLSPEEVETMAESLPGSVSNYSYNSAEDSTGKGNFSTYMSDGQSRTGRQDSTGSQKSVSHYDYPVNNNSSQSNRSSFNSQNMQDTGASSYKKTNGSNKSLEATEDTSEELRAEAKMWEMNARKLLGDLEMLRTEFSDQSKKMEGLEMDLSTAYVECDSLKKEVEQLTLSSGDPIVRQKTLEDSISQGESIPEIENALKDELKFQKESNANLSLQLKKSQEANVELVSVLQELEETIEQQKLEIENLSSLPSKLSALEKSFQTSEEGNMILSQQIEQLEESKKNLLAMVQELEEALENKMQDIEHEKIPNRKSIQDIEMKYENKLSAKEEEISSLKARLLESVPKTCNGGETVSRNVGDADLLEQIEVLNKKVQELEMDCNELTNENLELLFKLKEAKTDSKDGGASKDLLSNIYKDQSFSSSESVASNNLFRIFHSEDMLPEENAKKISNDGHISIRELETSKSAQEVGITDLNNELTDETSEMENLEVNSSSKEKEIGVLKKLLSELEAKVYHLEQDKLQLEEHMEDKTNEQESQLSELENAKNQSARLQEKIAEMQSEMDSSIEDLEQKLKETQFHWSEAQEECEYLRGENQQLQITIENLEEECDSFEKLNGYLRQQKLELEQYCSLMGARLRESSERFDDYCERVGLLEKKFALMLEEITSKEKNLTSEMDGILDENRNHIVKGQSLLNQMQMEKIVEIQNLKLEIENLSLKLSAAYDEKERIASNALLEVSTLRADKAKLESAFGEVQSEVILSKNEVNVMQTEYKQKLKDLTTELADFKFKMEMLMAEHEKLSELVEDYKSRELKFKSTMNSLESKLTDTEYERQQYMDESRNLKVQLQQTCQFENEIMALKNELNTSNTEKERLKASLCLKSELCEDLKAENTSFGRKMSSLEKAASELEHCKRTRTSLEERLMQLENDLNARDARCAQEKSKLQEKAQALEEELKLIKEQKRNQVSKLNRKPVNDDQKASKNSIIKNTNQVRSNRKKPSLKNDTEILKDQQDPYNSRKHQTEVESEHGLLDENVHIVEVEPVSKTQLLETAVEKAKEAIDIYEVQLNRSSSQGRNNHANGLVKSMAEEELVTKEKFERTKSMLEEELRDIQDRYFHMSLKYAEVESQREELVMKLKVAKSKKGWLS