AlfalfaGEDB | MS.gene59254

M. sativa cultivar XinJiangDaYe / MS.gene59254

KEGG: -
GO: -
PFAM: -

Nr:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59254.t1	RHN38533.1	86.8	91	12	0	5	95	20	110	7.90E-36	159.5

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Swissprot:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59254.t1	G7ZUE5	86.8	91	12	0	5	95	243	333	5.7e-36	159.5

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network:

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Gene1	Gene2	correlation coefficient	p_value	FDR
MS.gene052447	MS.gene59254	0.800611	1.33E-48	-1.69E-46

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PPI:

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
MS.gene59254.t1	MTR_4g023110	74.725	91	22	1	5	95	9	98	2.22e-45	143
MS.gene59254.t1	MTR_3g058800	71.579	95	26	1	1	95	6	99	8.95e-45	142
MS.gene59254.t1	MTR_2g020090	71.277	94	26	1	2	95	61	153	4.25e-44	142
MS.gene59254.t1	MTR_0029s0140	86.813	91	12	0	5	95	243	333	6.21e-44	146
MS.gene59254.t1	MTR_2g102860	87.059	85	11	0	11	95	13	97	1.07e-41	134
MS.gene59254.t1	MTR_4g017750	81.720	93	17	0	3	95	109	201	1.12e-41	137
MS.gene59254.t1	MTR_1g077650	67.778	90	28	1	5	94	47	135	3.88e-41	134
MS.gene59254.t1	MTR_5g080310	79.570	93	19	0	3	95	120	212	4.40e-41	136
MS.gene59254.t1	MTR_1g023240	83.721	86	14	0	10	95	35	120	1.11e-37	127
MS.gene59254.t1	MTR_6g463490	90.476	63	6	0	33	95	3	65	5.49e-37	121

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 28 sgRNAs with CRISPR-Local

Find 51 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAAGCTATATGGTCT+TGG	0.453421	6.4:-45070291	MS.gene59254:CDS
AAATAGCCTCGGCAAACTGC+CGG	0.585843	6.4:+45070382	None:intergenic
AACACTACCCTTCCGATAGT+TGG	0.493187	6.4:+45070257	None:intergenic
AAGAAGAAAGGGAAGCTATA+TGG	0.394700	6.4:-45070297	MS.gene59254:CDS
ACTACCCTTCCGATAGTTGG+CGG	0.600620	6.4:+45070260	None:intergenic
AGGATCCTTCACCATGATTG+AGG	0.557439	6.4:+45070214	None:intergenic
ATGATTGAGGCTGAGTCTAA+GGG	0.596575	6.4:+45070227	None:intergenic
ATTCTTTGTCCTTCCGCACT+TGG	0.388853	6.4:-45070338	MS.gene59254:CDS
CATCAGCTCAGGCTGCTGGG+AGG	0.597386	6.4:+45070194	None:intergenic
CATGATTGAGGCTGAGTCTA+AGG	0.271938	6.4:+45070226	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CAATATAAAGCAGAACAAAG+AGG	+	chr6.4:45070405-45070424	None:intergenic	30.0%
TGCAAAAAATGAAAGATAGC+TGG	-	chr6.4:45070265-45070284	MS.gene59254:CDS	30.0%
TGCAACCTGAACAAAAAATT+AGG	-	chr6.4:45070214-45070233	MS.gene59254:CDS	30.0%
AAAATAGTTAAGGACACCAC+TGG	+	chr6.4:45070520-45070539	None:intergenic	35.0%
AAGAAGAAAGGGAAGCTATA+TGG	-	chr6.4:45070652-45070671	MS.gene59254:intron	35.0%
AGCTATACTAGAAAATCCAC+AGG	+	chr6.4:45070192-45070211	None:intergenic	35.0%
AAAGGGAAGCTATATGGTCT+TGG	-	chr6.4:45070658-45070677	MS.gene59254:intron	40.0%
ATACACAGAATACTCTCCAG+TGG	-	chr6.4:45070501-45070520	MS.gene59254:intron	40.0%
ATGATTGAGGCTGAGTCTAA+GGG	+	chr6.4:45070725-45070744	None:intergenic	40.0%
CAGAACAAAGAGGTCTGTAA+TGG	+	chr6.4:45070395-45070414	None:intergenic	40.0%

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Chromosome	Type	Strat	End	Strand	Name
chr6.4	gene	45070140	45070831	45070140	ID=MS.gene59254
chr6.4	mRNA	45070140	45070831	45070140	ID=MS.gene59254.t1;Parent=MS.gene59254
chr6.4	exon	45070820	45070831	45070820	ID=MS.gene59254.t1.exon1;Parent=MS.gene59254.t1
chr6.4	CDS	45070820	45070831	45070820	ID=cds.MS.gene59254.t1;Parent=MS.gene59254.t1
chr6.4	exon	45070140	45070415	45070140	ID=MS.gene59254.t1.exon2;Parent=MS.gene59254.t1
chr6.4	CDS	45070140	45070415	45070140	ID=cds.MS.gene59254.t1;Parent=MS.gene59254.t1

Gene Sequence

>MS.gene59254

ATGTCATCATATGTGACATTGGCATATATCAAATTTACATCTGTTTTGTCCTGTGGATTTTCTAGTATAGCTCTTGCAACCTGAACAAAAAATTAGGTGATTAATAAGGATACAAAGTTTCAAAATGCAAAAAATGAAAGATAGCTGGCAGATTTGATATATGATTAATGGAGATTTCACATTTCTCCCTTTTCTTGTCTTGAATTTTCTTCTGAGCAGGGTTTGCATTGGACAAGTTAATTAATAGAGATTCCATTACAGACCTCTTTGTTCTGCTTTATATTGTTGATGATGATACTACTAGTTATTGTTTAATGTTGGTTTACTAGACTATAAAGCATAAACTAGGTGTGAATGATGCATACACAGAATACTCTCCAGTGGTGTCCTTAACTATTTTGTTATTATTTGAACAGGAGGAGTATGACCGGCAGTTTGCCGAGGCTATTTCTCAAGGGTCAACTATTGATCATTCTTTGTCCTTCCGCACTTGGACAAAAGTTGTTGGCGACAAGAAGAAAGGGAAGCTATATGGTCTTGGAAACTTAGCCGCCAACTATCGGAAGGGTAGTGTTGCGTCAACCCTTAGACTCAGCCTCAATCATGGTGAAGGATCCTCCCAGCAGCCTGAGCTGATGCCAGAGATGCAGGAGCTTATTCATCGATTGACACAAGAGCAGTTCGCGCAGTAG

Protein sequence

>MS.gene59254.t1

MSSYEEYDRQFAEAISQGSTIDHSLSFRTWTKVVGDKKKGKLYGLGNLAANYRKGSVASTLRLSLNHGEGSSQQPELMPEMQELIHRLTQEQFAQ