Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59326.t1 | XP_003611921.1 | 81.1 | 380 | 72 | 0 | 1 | 380 | 1 | 380 | 2.10E-156 | 562 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59326.t1 | A2XDK8 | 45.9 | 357 | 182 | 2 | 33 | 380 | 34 | 388 | 2.6e-70 | 267.3 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59326.t1 | G7KC47 | 81.1 | 380 | 72 | 0 | 1 | 380 | 1 | 380 | 1.5e-156 | 562.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049711 | MS.gene59326 | 0.800253 | 1.57E-48 | -1.69E-46 |
| MS.gene049824 | MS.gene59326 | 0.804966 | 1.68E-49 | -1.69E-46 |
| MS.gene049825 | MS.gene59326 | 0.80332 | 3.69E-49 | -1.69E-46 |
| MS.gene051279 | MS.gene59326 | 0.80206 | 6.71E-49 | -1.69E-46 |
| MS.gene051744 | MS.gene59326 | 0.807158 | 5.80E-50 | -1.69E-46 |
| MS.gene05423 | MS.gene59326 | 0.801039 | 1.09E-48 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59326.t1 | MTR_5g019430 | 95.789 | 380 | 16 | 0 | 1 | 380 | 1 | 380 | 0.0 | 741 |
| MS.gene59326.t1 | MTR_8g078100 | 70.557 | 377 | 106 | 2 | 1 | 377 | 1 | 372 | 3.82e-178 | 500 |
| MS.gene59326.t1 | MTR_4g069160 | 58.466 | 378 | 150 | 4 | 1 | 378 | 1 | 371 | 4.27e-140 | 403 |
| MS.gene59326.t1 | MTR_1g034480 | 54.907 | 377 | 160 | 3 | 1 | 377 | 1 | 367 | 4.94e-130 | 378 |
| MS.gene59326.t1 | MTR_3g011140 | 87.342 | 79 | 10 | 0 | 290 | 368 | 1 | 79 | 6.98e-40 | 137 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59326.t1 | AT2G18630 | 52.618 | 382 | 176 | 4 | 1 | 380 | 2 | 380 | 1.09e-128 | 375 |
| MS.gene59326.t1 | AT2G18630 | 52.618 | 382 | 176 | 4 | 1 | 380 | 2 | 380 | 1.11e-128 | 375 |
| MS.gene59326.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene59326.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene59326.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene59326.t1 | AT5G66675 | 50.649 | 385 | 180 | 4 | 4 | 380 | 15 | 397 | 1.56e-120 | 355 |
| MS.gene59326.t1 | AT4G34320 | 54.474 | 380 | 157 | 6 | 1 | 378 | 1 | 366 | 4.33e-120 | 353 |
| MS.gene59326.t1 | AT4G34320 | 54.474 | 380 | 157 | 6 | 1 | 378 | 1 | 366 | 4.33e-120 | 353 |
| MS.gene59326.t1 | AT4G34330 | 48.000 | 350 | 164 | 4 | 27 | 376 | 17 | 348 | 2.00e-100 | 301 |
| MS.gene59326.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene59326.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene59326.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene59326.t1 | AT5G66670 | 41.099 | 382 | 216 | 3 | 2 | 376 | 13 | 392 | 2.84e-90 | 278 |
| MS.gene59326.t1 | AT5G66660 | 39.221 | 385 | 223 | 5 | 1 | 376 | 11 | 393 | 2.86e-80 | 251 |
| MS.gene59326.t1 | AT3G28290 | 28.877 | 374 | 237 | 9 | 27 | 375 | 11 | 380 | 1.74e-35 | 134 |
| MS.gene59326.t1 | AT3G28300 | 28.877 | 374 | 237 | 9 | 27 | 375 | 11 | 380 | 1.74e-35 | 134 |
| MS.gene59326.t1 | AT3G28270 | 28.889 | 360 | 238 | 7 | 31 | 375 | 16 | 372 | 1.71e-34 | 131 |
| MS.gene59326.t1 | AT3G28270 | 28.889 | 360 | 238 | 7 | 31 | 375 | 16 | 372 | 1.71e-34 | 131 |
| MS.gene59326.t1 | AT3G28320 | 25.159 | 314 | 212 | 8 | 83 | 375 | 2 | 313 | 6.29e-19 | 87.0 |
| MS.gene59326.t1 | AT3G57100 | 23.926 | 326 | 219 | 6 | 68 | 380 | 43 | 352 | 5.29e-18 | 84.7 |
Find 79 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAATACGAGACAGCTTTAA+AGG | 0.201770 | 5.4:-11779104 | MS.gene59326:CDS |
| GCATCGAAGGATTGCAAGTT+TGG | 0.278688 | 5.4:+11779802 | None:intergenic |
| TTTGATGAAGAGGTTCAAAA+TGG | 0.309858 | 5.4:-11779475 | MS.gene59326:CDS |
| GGAAGTTGTCAAGGTCATTC+TGG | 0.348743 | 5.4:-11779662 | MS.gene59326:CDS |
| ATTAGAATTAGTCCCCTTGC+TGG | 0.351992 | 5.4:+11779912 | None:intergenic |
| ATCCTTCGATGCTACCATTC+AGG | 0.353874 | 5.4:-11779791 | MS.gene59326:CDS |
| GAATAAAATTCTTCAGTAAA+GGG | 0.368691 | 5.4:+11779388 | None:intergenic |
| CAATAGGCTCAGTTGGAAAA+TGG | 0.380390 | 5.4:-11779144 | MS.gene59326:CDS |
| CCTGTTGTAACAGCTTTGGC+AGG | 0.382385 | 5.4:-11779181 | MS.gene59326:CDS |
| TGGACTGCAAGCAAGATATA+TGG | 0.382413 | 5.4:-11779642 | MS.gene59326:CDS |
| AAAGACATTGAAAGGGCTTA+AGG | 0.390229 | 5.4:-11779431 | MS.gene59326:CDS |
| CCTGCCAAAGCTGTTACAAC+AGG | 0.393145 | 5.4:+11779181 | None:intergenic |
| CTCTCTTGCTCAAGGGATTG+AGG | 0.394697 | 5.4:-11779746 | MS.gene59326:CDS |
| GAATGACCTTGACAACTTCC+TGG | 0.395392 | 5.4:+11779665 | None:intergenic |
| AACAGCTTTGGCAGGGGCAT+TGG | 0.398944 | 5.4:-11779173 | MS.gene59326:CDS |
| CTTAAGGATTTCAAGGAAAC+CGG | 0.407846 | 5.4:-11779415 | MS.gene59326:CDS |
| CGAATAAAATTCTTCAGTAA+AGG | 0.416129 | 5.4:+11779387 | None:intergenic |
| CACCCATTTGAATCGGTGTT+GGG | 0.419900 | 5.4:+11779881 | None:intergenic |
| GAAAGGGCTTAAGGATTTCA+AGG | 0.423867 | 5.4:-11779422 | MS.gene59326:CDS |
| TGTCCCAACACCGATTCAAA+TGG | 0.439699 | 5.4:-11779884 | MS.gene59326:CDS |
| CCTGTTGGTGCGCTCCTGAA+TGG | 0.441077 | 5.4:+11779777 | None:intergenic |
| TGGTGGATATGAATAACATT+CGG | 0.442086 | 5.4:-11779033 | MS.gene59326:CDS |
| GTTCATGTCGAGAAGACTTC+CGG | 0.442461 | 5.4:+11779687 | None:intergenic |
| CCATTCAGGAGCGCACCAAC+AGG | 0.442576 | 5.4:-11779777 | MS.gene59326:CDS |
| GGGGCATTGGCTGTTCCAAT+AGG | 0.449406 | 5.4:-11779160 | MS.gene59326:CDS |
| GGTGGATATGAATAACATTC+GGG | 0.452854 | 5.4:-11779032 | MS.gene59326:CDS |
| AAATACGAGACAGCTTTAAA+GGG | 0.454834 | 5.4:-11779103 | MS.gene59326:CDS |
| TCGTGACTTGTTCTCCTTGG+TGG | 0.458271 | 5.4:-11779608 | MS.gene59326:CDS |
| CATTACAAAACTCCAATGTC+TGG | 0.460870 | 5.4:+11779563 | None:intergenic |
| GAAAATAAAGATTGAATCCA+TGG | 0.463994 | 5.4:-11778993 | MS.gene59326:CDS |
| TTCTTCAGTAAAGGGGTCCC+CGG | 0.472017 | 5.4:+11779396 | None:intergenic |
| GAGGTTCAAAATGGAGTTGA+AGG | 0.475155 | 5.4:-11779466 | MS.gene59326:CDS |
| GGATCGTGACTTGTTCTCCT+TGG | 0.484403 | 5.4:-11779611 | MS.gene59326:CDS |
| CTGTTGTAACAGCTTTGGCA+GGG | 0.485120 | 5.4:-11779180 | MS.gene59326:CDS |
| TGACTTGTTCTCCTTGGTGG+AGG | 0.486659 | 5.4:-11779605 | MS.gene59326:CDS |
| ACTTATGTAAAGACATTGAA+AGG | 0.496650 | 5.4:-11779439 | MS.gene59326:CDS |
| CGAGAATAGTCTCCAGACAT+TGG | 0.503949 | 5.4:-11779575 | MS.gene59326:CDS |
| GCTGTTCCAATAGGCTCAGT+TGG | 0.506013 | 5.4:-11779151 | MS.gene59326:CDS |
| TGTTGTAACAGCTTTGGCAG+GGG | 0.510574 | 5.4:-11779179 | MS.gene59326:CDS |
| ATGGGAGGTCAGTCCAGCAA+GGG | 0.512900 | 5.4:-11779925 | MS.gene59326:CDS |
| GTCCCAACACCGATTCAAAT+GGG | 0.524166 | 5.4:-11779883 | MS.gene59326:CDS |
| GCCAAAGCTGTTACAACAGG+GGG | 0.524847 | 5.4:+11779184 | None:intergenic |
| GAGTCACTAGGAGAAGTTAC+CGG | 0.525494 | 5.4:-11779706 | MS.gene59326:CDS |
| CTCCTGAATGGTAGCATCGA+AGG | 0.528207 | 5.4:+11779789 | None:intergenic |
| AGCTGATCAATGTAGTAGGC+AGG | 0.528656 | 5.4:-11778858 | MS.gene59326:CDS |
| GAATGCGCACCCATTTGAAT+CGG | 0.533513 | 5.4:+11779874 | None:intergenic |
| GCACCCATTTGAATCGGTGT+TGG | 0.536554 | 5.4:+11779880 | None:intergenic |
| GTGATCAACTCTCTTGCTCA+AGG | 0.543035 | 5.4:-11779754 | MS.gene59326:CDS |
| TGCAAGCTGATCAATGTAGT+AGG | 0.543984 | 5.4:-11778862 | MS.gene59326:CDS |
| GTTATCATTTCAATGCATGT+TGG | 0.551745 | 5.4:-11779070 | MS.gene59326:CDS |
| CTTATGTAAAGACATTGAAA+GGG | 0.557546 | 5.4:-11779438 | MS.gene59326:CDS |
| TCTATATCGCTTGAGTCACT+AGG | 0.561891 | 5.4:-11779718 | MS.gene59326:CDS |
| AAGTCTTCTCGACATGAACC+AGG | 0.568362 | 5.4:-11779683 | MS.gene59326:CDS |
| ATCAATGTAGTAGGCAGGCT+AGG | 0.571773 | 5.4:-11778853 | MS.gene59326:CDS |
| CTGCCAAAGCTGTTACAACA+GGG | 0.573595 | 5.4:+11779182 | None:intergenic |
| AATAAAATTCTTCAGTAAAG+GGG | 0.573615 | 5.4:+11779389 | None:intergenic |
| GTAGGCAGGCTAGGAAAGCA+AGG | 0.576577 | 5.4:-11778844 | MS.gene59326:CDS |
| GATGGGAGGTCAGTCCAGCA+AGG | 0.580437 | 5.4:-11779926 | MS.gene59326:CDS |
| TTGAAATGATAACTTCTCGT+TGG | 0.583800 | 5.4:+11779080 | None:intergenic |
| GCAAGATATATGGAACAAGA+AGG | 0.585118 | 5.4:-11779632 | MS.gene59326:CDS |
| TGGGAGGTCAGTCCAGCAAG+GGG | 0.595429 | 5.4:-11779924 | MS.gene59326:CDS |
| TTAAGGATTTCAAGGAAACC+GGG | 0.601773 | 5.4:-11779414 | MS.gene59326:CDS |
| AAGAGAGTTGATCACCCTGT+TGG | 0.602591 | 5.4:+11779762 | None:intergenic |
| ATCTCACAAGAGATTGAAGA+GGG | 0.605669 | 5.4:-11779281 | MS.gene59326:CDS |
| TGATCAACTCTCTTGCTCAA+GGG | 0.622317 | 5.4:-11779753 | MS.gene59326:CDS |
| CATGAACCAGGAAGTTGTCA+AGG | 0.624194 | 5.4:-11779671 | MS.gene59326:CDS |
| GACTGTGAAATTGGGATGGG+AGG | 0.630082 | 5.4:-11779940 | None:intergenic |
| CAAAGCTGTTACAACAGGGG+GGG | 0.635120 | 5.4:+11779186 | None:intergenic |
| TGTTGGTACTAAAATTGCAC+TGG | 0.637667 | 5.4:-11779053 | MS.gene59326:CDS |
| AATCTCACAAGAGATTGAAG+AGG | 0.640781 | 5.4:-11779282 | MS.gene59326:CDS |
| CATTCAGGAGCGCACCAACA+GGG | 0.641177 | 5.4:-11779776 | MS.gene59326:CDS |
| GGGTGCGCATTCTCTTTATG+CGG | 0.642050 | 5.4:-11779863 | MS.gene59326:CDS |
| TGGTACTAAAATTGCACTGG+TGG | 0.644582 | 5.4:-11779050 | MS.gene59326:CDS |
| AGGTTCAAAATGGAGTTGAA+GGG | 0.659181 | 5.4:-11779465 | MS.gene59326:CDS |
| AAAATCAGCAGTTTGCACCA+TGG | 0.662189 | 5.4:+11778976 | None:intergenic |
| TGCCAAAGCTGTTACAACAG+GGG | 0.670839 | 5.4:+11779183 | None:intergenic |
| CCAAAGCTGTTACAACAGGG+GGG | 0.689883 | 5.4:+11779185 | None:intergenic |
| GGCTAGGAAAGCAAGGACAG+TGG | 0.694536 | 5.4:-11778837 | MS.gene59326:CDS |
| TAAGGATTTCAAGGAAACCG+GGG | 0.696914 | 5.4:-11779413 | MS.gene59326:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATTCTTCAGTAAAG+GGG | + | chr5.4:11779344-11779363 | None:intergenic | 20.0% |
| !! | GAATAAAATTCTTCAGTAAA+GGG | + | chr5.4:11779345-11779364 | None:intergenic | 20.0% |
| ! | ACTTATGTAAAGACATTGAA+AGG | - | chr5.4:11779291-11779310 | MS.gene59326:CDS | 25.0% |
| ! | CGAATAAAATTCTTCAGTAA+AGG | + | chr5.4:11779346-11779365 | None:intergenic | 25.0% |
| ! | CTTATGTAAAGACATTGAAA+GGG | - | chr5.4:11779292-11779311 | MS.gene59326:CDS | 25.0% |
| ! | GAAAATAAAGATTGAATCCA+TGG | - | chr5.4:11779737-11779756 | MS.gene59326:CDS | 25.0% |
| !!! | ATTTTATTCGTTGTTTCAGT+CGG | - | chr5.4:11779356-11779375 | MS.gene59326:CDS | 25.0% |
| GTTATCATTTCAATGCATGT+TGG | - | chr5.4:11779660-11779679 | MS.gene59326:CDS | 30.0% | |
| TTGAAATGATAACTTCTCGT+TGG | + | chr5.4:11779653-11779672 | None:intergenic | 30.0% | |
| TTTGATGAAGAGGTTCAAAA+TGG | - | chr5.4:11779255-11779274 | MS.gene59326:CDS | 30.0% | |
| ! | TGGTGGATATGAATAACATT+CGG | - | chr5.4:11779697-11779716 | MS.gene59326:CDS | 30.0% |
| !! | AAATACGAGACAGCTTTAAA+GGG | - | chr5.4:11779627-11779646 | MS.gene59326:CDS | 30.0% |
| !!! | AATGACTTGTTTTGATGAAG+AGG | - | chr5.4:11779245-11779264 | MS.gene59326:CDS | 30.0% |
| AAAGACATTGAAAGGGCTTA+AGG | - | chr5.4:11779299-11779318 | MS.gene59326:CDS | 35.0% | |
| AATCTCACAAGAGATTGAAG+AGG | - | chr5.4:11779448-11779467 | MS.gene59326:CDS | 35.0% | |
| AGGTTCAAAATGGAGTTGAA+GGG | - | chr5.4:11779265-11779284 | MS.gene59326:CDS | 35.0% | |
| ATCTCACAAGAGATTGAAGA+GGG | - | chr5.4:11779449-11779468 | MS.gene59326:CDS | 35.0% | |
| CATTACAAAACTCCAATGTC+TGG | + | chr5.4:11779170-11779189 | None:intergenic | 35.0% | |
| CTTAAGGATTTCAAGGAAAC+CGG | - | chr5.4:11779315-11779334 | MS.gene59326:CDS | 35.0% | |
| GCAAGATATATGGAACAAGA+AGG | - | chr5.4:11779098-11779117 | MS.gene59326:CDS | 35.0% | |
| GGTGGATATGAATAACATTC+GGG | - | chr5.4:11779698-11779717 | MS.gene59326:CDS | 35.0% | |
| TGTTGGTACTAAAATTGCAC+TGG | - | chr5.4:11779677-11779696 | MS.gene59326:CDS | 35.0% | |
| TTAAGGATTTCAAGGAAACC+GGG | - | chr5.4:11779316-11779335 | MS.gene59326:CDS | 35.0% | |
| ! | GAAATACGAGACAGCTTTAA+AGG | - | chr5.4:11779626-11779645 | MS.gene59326:CDS | 35.0% |
| ! | TGATTTTGCTCTTGGAAATG+AGG | - | chr5.4:11779770-11779789 | MS.gene59326:CDS | 35.0% |
| !!! | TGTAGCTGTGTTGATTTTCT+CGG | - | chr5.4:11779500-11779519 | MS.gene59326:CDS | 35.0% |
| AAAATCAGCAGTTTGCACCA+TGG | + | chr5.4:11779757-11779776 | None:intergenic | 40.0% | |
| ATTAGAATTAGTCCCCTTGC+TGG | + | chr5.4:11778821-11778840 | None:intergenic | 40.0% | |
| CAATAGGCTCAGTTGGAAAA+TGG | - | chr5.4:11779586-11779605 | MS.gene59326:CDS | 40.0% | |
| GAAAGGGCTTAAGGATTTCA+AGG | - | chr5.4:11779308-11779327 | MS.gene59326:CDS | 40.0% | |
| GAGGTTCAAAATGGAGTTGA+AGG | - | chr5.4:11779264-11779283 | MS.gene59326:CDS | 40.0% | |
| TAAGGATTTCAAGGAAACCG+GGG | - | chr5.4:11779317-11779336 | MS.gene59326:CDS | 40.0% | |
| TCTATATCGCTTGAGTCACT+AGG | - | chr5.4:11779012-11779031 | MS.gene59326:CDS | 40.0% | |
| TGATCAACTCTCTTGCTCAA+GGG | - | chr5.4:11778977-11778996 | MS.gene59326:CDS | 40.0% | |
| TGCAAGCTGATCAATGTAGT+AGG | - | chr5.4:11779868-11779887 | MS.gene59326:CDS | 40.0% | |
| TGGACTGCAAGCAAGATATA+TGG | - | chr5.4:11779088-11779107 | MS.gene59326:CDS | 40.0% | |
| TGGTACTAAAATTGCACTGG+TGG | - | chr5.4:11779680-11779699 | MS.gene59326:CDS | 40.0% | |
| ! | CATTTTCCAACTGAGCCTAT+TGG | + | chr5.4:11779588-11779607 | None:intergenic | 40.0% |
| !!! | CAAACTGCTGATTTTGCTCT+TGG | - | chr5.4:11779762-11779781 | MS.gene59326:CDS | 40.0% |
| AAGTCTTCTCGACATGAACC+AGG | - | chr5.4:11779047-11779066 | MS.gene59326:CDS | 45.0% | |
| AGCTGATCAATGTAGTAGGC+AGG | - | chr5.4:11779872-11779891 | MS.gene59326:CDS | 45.0% | |
| ATCAATGTAGTAGGCAGGCT+AGG | - | chr5.4:11779877-11779896 | MS.gene59326:CDS | 45.0% | |
| ATCCTTCGATGCTACCATTC+AGG | - | chr5.4:11778939-11778958 | MS.gene59326:CDS | 45.0% | |
| CATGAACCAGGAAGTTGTCA+AGG | - | chr5.4:11779059-11779078 | MS.gene59326:CDS | 45.0% | |
| CGAGAATAGTCTCCAGACAT+TGG | - | chr5.4:11779155-11779174 | MS.gene59326:CDS | 45.0% | |
| CTCGAAAAAATCCTCCACCA+AGG | + | chr5.4:11779139-11779158 | None:intergenic | 45.0% | |
| CTGCCAAAGCTGTTACAACA+GGG | + | chr5.4:11779551-11779570 | None:intergenic | 45.0% | |
| GAATGACCTTGACAACTTCC+TGG | + | chr5.4:11779068-11779087 | None:intergenic | 45.0% | |
| GAATGCGCACCCATTTGAAT+CGG | + | chr5.4:11778859-11778878 | None:intergenic | 45.0% | |
| GAGTCACTAGGAGAAGTTAC+CGG | - | chr5.4:11779024-11779043 | MS.gene59326:CDS | 45.0% | |
| GCATCGAAGGATTGCAAGTT+TGG | + | chr5.4:11778931-11778950 | None:intergenic | 45.0% | |
| GGAAGTTGTCAAGGTCATTC+TGG | - | chr5.4:11779068-11779087 | MS.gene59326:CDS | 45.0% | |
| GTGATCAACTCTCTTGCTCA+AGG | - | chr5.4:11778976-11778995 | MS.gene59326:CDS | 45.0% | |
| GTTCATGTCGAGAAGACTTC+CGG | + | chr5.4:11779046-11779065 | None:intergenic | 45.0% | |
| TGCCAAAGCTGTTACAACAG+GGG | + | chr5.4:11779550-11779569 | None:intergenic | 45.0% | |
| ! | AAGAGAGTTGATCACCCTGT+TGG | + | chr5.4:11778971-11778990 | None:intergenic | 45.0% |
| ! | CACCCATTTGAATCGGTGTT+GGG | + | chr5.4:11778852-11778871 | None:intergenic | 45.0% |
| ! | CTGTTGTAACAGCTTTGGCA+GGG | - | chr5.4:11779550-11779569 | MS.gene59326:CDS | 45.0% |
| ! | TGTTGTAACAGCTTTGGCAG+GGG | - | chr5.4:11779551-11779570 | MS.gene59326:CDS | 45.0% |
| !! | GTCCCAACACCGATTCAAAT+GGG | - | chr5.4:11778847-11778866 | MS.gene59326:CDS | 45.0% |
| !! | TGTCCCAACACCGATTCAAA+TGG | - | chr5.4:11778846-11778865 | MS.gene59326:CDS | 45.0% |
| !!! | AGCTGTGTTGATTTTCTCGG+TGG | - | chr5.4:11779503-11779522 | MS.gene59326:CDS | 45.0% |
| !!! | TGTGTTGATTTTCTCGGTGG+TGG | - | chr5.4:11779506-11779525 | MS.gene59326:CDS | 45.0% |
| CAAAGCTGTTACAACAGGGG+GGG | + | chr5.4:11779547-11779566 | None:intergenic | 50.0% | |
| CCAAAGCTGTTACAACAGGG+GGG | + | chr5.4:11779548-11779567 | None:intergenic | 50.0% | |
| CCTGCCAAAGCTGTTACAAC+AGG | + | chr5.4:11779552-11779571 | None:intergenic | 50.0% | |
| CTCTCTTGCTCAAGGGATTG+AGG | - | chr5.4:11778984-11779003 | MS.gene59326:CDS | 50.0% | |
| GCACCCATTTGAATCGGTGT+TGG | + | chr5.4:11778853-11778872 | None:intergenic | 50.0% | |
| GCCAAAGCTGTTACAACAGG+GGG | + | chr5.4:11779549-11779568 | None:intergenic | 50.0% | |
| GCTGTTCCAATAGGCTCAGT+TGG | - | chr5.4:11779579-11779598 | MS.gene59326:CDS | 50.0% | |
| GGGTGCGCATTCTCTTTATG+CGG | - | chr5.4:11778867-11778886 | MS.gene59326:CDS | 50.0% | |
| TTCTTCAGTAAAGGGGTCCC+CGG | + | chr5.4:11779337-11779356 | None:intergenic | 50.0% | |
| ! | CCTGTTGTAACAGCTTTGGC+AGG | - | chr5.4:11779549-11779568 | MS.gene59326:CDS | 50.0% |
| ! | CTCCTGAATGGTAGCATCGA+AGG | + | chr5.4:11778944-11778963 | None:intergenic | 50.0% |
| !! | AGCGCGCGAAAAACTTGTTG+CGG | - | chr5.4:11779212-11779231 | MS.gene59326:CDS | 50.0% |
| !! | GGATCGTGACTTGTTCTCCT+TGG | - | chr5.4:11779119-11779138 | MS.gene59326:CDS | 50.0% |
| !! | TCGTGACTTGTTCTCCTTGG+TGG | - | chr5.4:11779122-11779141 | MS.gene59326:CDS | 50.0% |
| !! | TGACTTGTTCTCCTTGGTGG+AGG | - | chr5.4:11779125-11779144 | MS.gene59326:CDS | 50.0% |
| ATGGGAGGTCAGTCCAGCAA+GGG | - | chr5.4:11778805-11778824 | MS.gene59326:CDS | 55.0% | |
| CCCCCCTGTTGTAACAGCTT+TGG | - | chr5.4:11779545-11779564 | MS.gene59326:CDS | 55.0% | |
| GGCTAGGAAAGCAAGGACAG+TGG | - | chr5.4:11779893-11779912 | MS.gene59326:CDS | 55.0% | |
| GTAGGCAGGCTAGGAAAGCA+AGG | - | chr5.4:11779886-11779905 | MS.gene59326:CDS | 55.0% | |
| ! | AACAGCTTTGGCAGGGGCAT+TGG | - | chr5.4:11779557-11779576 | MS.gene59326:CDS | 55.0% |
| ! | CATTCAGGAGCGCACCAACA+GGG | - | chr5.4:11778954-11778973 | MS.gene59326:CDS | 55.0% |
| !! | GGGGCATTGGCTGTTCCAAT+AGG | - | chr5.4:11779570-11779589 | MS.gene59326:CDS | 55.0% |
| CCTGTTGGTGCGCTCCTGAA+TGG | + | chr5.4:11778956-11778975 | None:intergenic | 60.0% | |
| TGGGAGGTCAGTCCAGCAAG+GGG | - | chr5.4:11778806-11778825 | MS.gene59326:CDS | 60.0% | |
| ! | CCATTCAGGAGCGCACCAAC+AGG | - | chr5.4:11778953-11778972 | MS.gene59326:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 11778805 | 11779947 | 11778805 | ID=MS.gene59326 |
| chr5.4 | mRNA | 11778805 | 11779947 | 11778805 | ID=MS.gene59326.t1;Parent=MS.gene59326 |
| chr5.4 | exon | 11778805 | 11779947 | 11778805 | ID=MS.gene59326.t1.exon1;Parent=MS.gene59326.t1 |
| chr5.4 | CDS | 11778805 | 11779947 | 11778805 | ID=cds.MS.gene59326.t1;Parent=MS.gene59326.t1 |
| Gene Sequence |
| Protein sequence |
