Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59491.t1 | XP_003612205.2 | 97.2 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 3.10E-152 | 547.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59491.t1 | Q42564 | 70.3 | 286 | 79 | 1 | 1 | 280 | 1 | 286 | 4.8e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59491.t1 | G7JXJ2 | 97.2 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 2.2e-152 | 547.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene060547 | MS.gene59491 | 0.991078 | 8.84E-186 | -1.69E-46 |
| MS.gene060548 | MS.gene59491 | 0.954487 | 2.65E-112 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59491.t1 | MTR_5g022510 | 97.153 | 281 | 8 | 0 | 1 | 281 | 1 | 281 | 0.0 | 566 |
| MS.gene59491.t1 | MTR_5g022510 | 97.942 | 243 | 5 | 0 | 39 | 281 | 14 | 256 | 5.35e-180 | 496 |
| MS.gene59491.t1 | MTR_4g073410 | 72.043 | 279 | 73 | 1 | 6 | 279 | 7 | 285 | 9.60e-148 | 415 |
| MS.gene59491.t1 | MTR_4g061140 | 64.583 | 240 | 84 | 1 | 6 | 244 | 8 | 247 | 2.02e-113 | 327 |
| MS.gene59491.t1 | MTR_4g061140 | 64.435 | 239 | 84 | 1 | 6 | 243 | 8 | 246 | 2.63e-112 | 324 |
| MS.gene59491.t1 | MTR_4g061140 | 62.911 | 213 | 78 | 1 | 33 | 244 | 1 | 213 | 8.75e-97 | 283 |
| MS.gene59491.t1 | MTR_3g088160 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 1.94e-76 | 238 |
| MS.gene59491.t1 | MTR_3g088160 | 49.425 | 261 | 105 | 6 | 13 | 246 | 100 | 360 | 6.22e-76 | 238 |
| MS.gene59491.t1 | MTR_5g008440 | 51.497 | 167 | 66 | 2 | 78 | 243 | 29 | 181 | 3.73e-51 | 167 |
| MS.gene59491.t1 | MTR_3g107060 | 37.860 | 243 | 127 | 6 | 11 | 243 | 86 | 314 | 5.13e-41 | 144 |
| MS.gene59491.t1 | MTR_7g029030 | 29.278 | 263 | 141 | 10 | 35 | 256 | 60 | 318 | 4.06e-18 | 83.2 |
| MS.gene59491.t1 | MTR_4g095450 | 28.854 | 253 | 135 | 7 | 32 | 243 | 59 | 307 | 1.52e-16 | 78.6 |
| MS.gene59491.t1 | MTR_1g025980 | 29.225 | 284 | 133 | 13 | 22 | 253 | 46 | 313 | 2.63e-16 | 77.8 |
| MS.gene59491.t1 | MTR_4g030890 | 27.208 | 283 | 136 | 9 | 15 | 242 | 113 | 380 | 1.00e-14 | 73.9 |
| MS.gene59491.t1 | MTR_7g093370 | 24.719 | 267 | 151 | 9 | 22 | 242 | 91 | 353 | 2.31e-13 | 69.7 |
| MS.gene59491.t1 | MTR_5g064610 | 31.928 | 166 | 79 | 5 | 27 | 158 | 113 | 278 | 1.56e-12 | 67.4 |
| MS.gene59491.t1 | MTR_3g094670 | 26.087 | 253 | 133 | 9 | 34 | 242 | 62 | 304 | 3.61e-12 | 65.9 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59491.t1 | AT4G35000 | 73.745 | 259 | 68 | 0 | 1 | 259 | 1 | 259 | 6.14e-144 | 405 |
| MS.gene59491.t1 | AT4G35970 | 66.788 | 274 | 90 | 1 | 6 | 279 | 5 | 277 | 2.56e-135 | 384 |
| MS.gene59491.t1 | AT4G35970 | 72.018 | 218 | 60 | 1 | 6 | 223 | 5 | 221 | 2.92e-115 | 331 |
| MS.gene59491.t1 | AT3G09640 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.61e-109 | 316 |
| MS.gene59491.t1 | AT3G09640 | 63.180 | 239 | 88 | 0 | 6 | 244 | 9 | 247 | 3.61e-109 | 316 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 60.000 | 240 | 95 | 1 | 6 | 244 | 8 | 247 | 9.89e-105 | 305 |
| MS.gene59491.t1 | AT1G07890 | 59.583 | 240 | 96 | 1 | 6 | 244 | 8 | 247 | 3.67e-104 | 303 |
| MS.gene59491.t1 | AT4G08390 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.52e-78 | 241 |
| MS.gene59491.t1 | AT4G08390 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.52e-78 | 241 |
| MS.gene59491.t1 | AT4G08390 | 49.042 | 261 | 106 | 6 | 13 | 246 | 106 | 366 | 7.52e-78 | 241 |
| MS.gene59491.t1 | AT4G08390 | 49.042 | 261 | 106 | 6 | 13 | 246 | 105 | 365 | 1.23e-77 | 240 |
| MS.gene59491.t1 | AT1G77490 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.20e-75 | 237 |
| MS.gene59491.t1 | AT1G77490 | 49.042 | 261 | 106 | 6 | 13 | 246 | 85 | 345 | 1.53e-75 | 236 |
| MS.gene59491.t1 | AT4G08390 | 44.828 | 261 | 91 | 7 | 13 | 246 | 106 | 340 | 2.59e-64 | 205 |
| MS.gene59491.t1 | AT4G32320 | 37.288 | 236 | 124 | 6 | 18 | 243 | 102 | 323 | 1.90e-39 | 140 |
| MS.gene59491.t1 | AT4G17690 | 37.019 | 208 | 85 | 8 | 72 | 243 | 108 | 305 | 2.82e-22 | 94.7 |
| MS.gene59491.t1 | AT4G16270 | 30.496 | 282 | 123 | 12 | 23 | 249 | 73 | 336 | 2.05e-21 | 92.8 |
| MS.gene59491.t1 | AT1G49570 | 27.857 | 280 | 136 | 9 | 22 | 247 | 70 | 337 | 5.51e-19 | 85.9 |
| MS.gene59491.t1 | AT4G30170 | 30.620 | 258 | 127 | 10 | 31 | 243 | 58 | 308 | 2.74e-16 | 77.8 |
| MS.gene59491.t1 | AT4G09010 | 34.375 | 160 | 71 | 5 | 32 | 157 | 49 | 208 | 1.08e-15 | 75.9 |
| MS.gene59491.t1 | AT4G09010 | 34.375 | 160 | 71 | 5 | 32 | 157 | 114 | 273 | 2.68e-15 | 75.5 |
| MS.gene59491.t1 | AT5G14130 | 27.027 | 259 | 143 | 8 | 31 | 247 | 63 | 317 | 2.95e-15 | 75.1 |
| MS.gene59491.t1 | AT5G14130 | 27.027 | 259 | 143 | 8 | 31 | 247 | 104 | 358 | 4.96e-15 | 74.7 |
| MS.gene59491.t1 | AT4G09010 | 34.375 | 160 | 71 | 5 | 32 | 157 | 161 | 320 | 7.02e-15 | 74.3 |
| MS.gene59491.t1 | AT4G37530 | 26.966 | 267 | 139 | 9 | 32 | 249 | 59 | 318 | 2.70e-14 | 72.4 |
| MS.gene59491.t1 | AT5G42180 | 28.364 | 275 | 132 | 10 | 22 | 245 | 45 | 305 | 3.60e-14 | 71.6 |
| MS.gene59491.t1 | AT4G37520 | 26.592 | 267 | 140 | 9 | 32 | 249 | 59 | 318 | 5.30e-13 | 68.6 |
| MS.gene59491.t1 | AT3G49960 | 28.352 | 261 | 131 | 9 | 32 | 243 | 59 | 312 | 8.92e-13 | 67.8 |
| MS.gene59491.t1 | AT4G37530 | 32.022 | 178 | 99 | 7 | 32 | 191 | 59 | 232 | 2.03e-12 | 66.2 |
| MS.gene59491.t1 | AT5G17820 | 26.296 | 270 | 134 | 12 | 10 | 230 | 29 | 282 | 2.13e-12 | 66.6 |
| MS.gene59491.t1 | AT5G17820 | 26.296 | 270 | 134 | 12 | 10 | 230 | 82 | 335 | 7.19e-12 | 65.5 |
| MS.gene59491.t1 | AT5G15180 | 26.937 | 271 | 137 | 9 | 26 | 247 | 58 | 316 | 9.10e-12 | 65.1 |
Find 63 sgRNAs with CRISPR-Local
Find 108 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACAGGGAACTAATGAAAT+TGG | 0.251753 | 5.4:-14056739 | MS.gene59491:intron |
| TGCCTCAACTGTTGTGATCC+TGG | 0.267857 | 5.4:-14056379 | MS.gene59491:CDS |
| CATGATTTAATTACCTTGTT+TGG | 0.286806 | 5.4:+14057183 | None:intergenic |
| CAATTGGCTAAGGCAGCTTT+AGG | 0.300344 | 5.4:-14056411 | MS.gene59491:CDS |
| CACAAGAAACTCTCTGAATT+AGG | 0.339734 | 5.4:-14056462 | MS.gene59491:CDS |
| ATGTACTAGTACCTTTCTTC+CGG | 0.351786 | 5.4:+14057368 | None:intergenic |
| CCAACTATTCACTTTGTTCC+CGG | 0.389997 | 5.4:-14057387 | MS.gene59491:CDS |
| AGGTCCGCATATGAAACTTT+GGG | 0.390870 | 5.4:+14057850 | None:intergenic |
| TTATATGTATTTCAGCTAGC+TGG | 0.393811 | 5.4:-14057438 | MS.gene59491:intron |
| TAATTACCTTGTTTGGCATC+TGG | 0.400655 | 5.4:+14057190 | None:intergenic |
| TGATTCCTTATAGAACCATT+TGG | 0.401526 | 5.4:+14058065 | None:intergenic |
| GCCTCAACTGTTGTGATCCT+GGG | 0.428816 | 5.4:-14056378 | MS.gene59491:CDS |
| AAAGATCGCTCTAACTTTGA+AGG | 0.430021 | 5.4:-14056885 | MS.gene59491:CDS |
| AAGGTCCGCATATGAAACTT+TGG | 0.433809 | 5.4:+14057849 | None:intergenic |
| TGTACTAGTACCTTTCTTCC+GGG | 0.435662 | 5.4:+14057369 | None:intergenic |
| TGGCAGTTATCGTTCTCAAT+TGG | 0.438208 | 5.4:-14056427 | MS.gene59491:CDS |
| CATAGAGTTCAACATATTTG+CGG | 0.439517 | 5.4:+14056658 | None:intergenic |
| TCAACATATTTGCGGAATGC+AGG | 0.460562 | 5.4:+14056666 | None:intergenic |
| TCACTTTGTTCCCGGAAGAA+AGG | 0.460671 | 5.4:-14057379 | MS.gene59491:intron |
| TATATGTATTTCAGCTAGCT+GGG | 0.463788 | 5.4:-14057437 | MS.gene59491:intron |
| GTTGTGGCTGTAGAGGTCAC+TGG | 0.475048 | 5.4:-14057414 | MS.gene59491:CDS |
| AAAACAGCTGTTGAATTATG+TGG | 0.483315 | 5.4:-14058008 | MS.gene59491:intron |
| AGCTGGGGTTGTGGCTGTAG+AGG | 0.496133 | 5.4:-14057421 | MS.gene59491:CDS |
| GCTCTAACTTTGAAGGTCAA+TGG | 0.497264 | 5.4:-14056878 | MS.gene59491:CDS |
| GGGGTCCAAATGGTTCTATA+AGG | 0.497436 | 5.4:-14058070 | MS.gene59491:CDS |
| CCGGGAACAAAGTGAATAGT+TGG | 0.498623 | 5.4:+14057387 | None:intergenic |
| GCTGAACCATGCTGCTAACA+AGG | 0.508818 | 5.4:-14058036 | MS.gene59491:CDS |
| ATTTCAGCTAGCTGGGGTTG+TGG | 0.511946 | 5.4:-14057430 | MS.gene59491:intron |
| ATTATAAAATAACCTGGTAA+AGG | 0.515916 | 5.4:+14057830 | None:intergenic |
| TTCATATGCGGACCTTTACC+AGG | 0.516618 | 5.4:-14057842 | MS.gene59491:intron |
| TCTGGAAGGCGACCTTCTTG+TGG | 0.517530 | 5.4:+14057208 | None:intergenic |
| TTGAGAAACAGAGGAAGTGA+AGG | 0.521165 | 5.4:-14057881 | MS.gene59491:intron |
| TCAAGCCCTTGTTAGCAGCA+TGG | 0.531740 | 5.4:+14058030 | None:intergenic |
| ATATGTTGAACTCTATGCTA+AGG | 0.543090 | 5.4:-14056652 | MS.gene59491:intron |
| TTGTACCAAAGTGTGGCCTC+CGG | 0.545189 | 5.4:+14057016 | None:intergenic |
| AAAGACATTGTAGCTCTCTC+CGG | 0.548124 | 5.4:-14057035 | MS.gene59491:CDS |
| CGCCTTCCAGATGCCAAACA+AGG | 0.549529 | 5.4:-14057196 | MS.gene59491:intron |
| TTATCGTTCTCAATTGGCTA+AGG | 0.549693 | 5.4:-14056421 | MS.gene59491:CDS |
| ATTTATAGGTGGCATGATGC+TGG | 0.555051 | 5.4:-14058119 | MS.gene59491:intron |
| GGCTAAGGCAGCTTTAGGAA+TGG | 0.558750 | 5.4:-14056406 | MS.gene59491:CDS |
| TACCTTGTTTGGCATCTGGA+AGG | 0.559846 | 5.4:+14057194 | None:intergenic |
| AATTAATTTGTACCAAAGTG+TGG | 0.573092 | 5.4:+14057009 | None:intergenic |
| TAAGAGTTATCAAACTTGAG+AGG | 0.573775 | 5.4:+14056846 | None:intergenic |
| TTGAGAACGATAACTGCCAC+CGG | 0.582999 | 5.4:+14056431 | None:intergenic |
| AAGAGTTATCAAACTTGAGA+GGG | 0.589980 | 5.4:+14056847 | None:intergenic |
| TCTCTCCGGAGGCCACACTT+TGG | 0.591661 | 5.4:-14057021 | MS.gene59491:intron |
| TCTGAATTAGGCTTCAATCC+CGG | 0.595170 | 5.4:-14056450 | MS.gene59491:CDS |
| TACGCTAATCGTAGCATGAG+AGG | 0.599636 | 5.4:+14058217 | None:intergenic |
| GGTCCGCATATGAAACTTTG+GGG | 0.601066 | 5.4:+14057851 | None:intergenic |
| TCAACTAGAGCCTTGTCTGT+AGG | 0.607702 | 5.4:+14056693 | None:intergenic |
| ATTGAAGCTTCCTACAGACA+AGG | 0.615401 | 5.4:-14056703 | MS.gene59491:CDS |
| CTGAACCATGCTGCTAACAA+GGG | 0.615953 | 5.4:-14058035 | MS.gene59491:CDS |
| GACATTGTAGCTCTCTCCGG+AGG | 0.618468 | 5.4:-14057032 | MS.gene59491:CDS |
| TCATTGGAATCTCCACAAGA+AGG | 0.637304 | 5.4:-14057220 | MS.gene59491:CDS |
| ACCCAGGATCACAACAGTTG+AGG | 0.637431 | 5.4:+14056377 | None:intergenic |
| ATATGTATTTCAGCTAGCTG+GGG | 0.644095 | 5.4:-14057436 | MS.gene59491:intron |
| TGAGCTCAAGTAAGTAACCC+AGG | 0.647120 | 5.4:+14056361 | None:intergenic |
| AGAGTATGTTAAAGAAATCG+AGG | 0.648519 | 5.4:-14058287 | MS.gene59491:CDS |
| ACACCCCAAAGTTTCATATG+CGG | 0.685445 | 5.4:-14057854 | MS.gene59491:CDS |
| TGAGAACGATAACTGCCACC+GGG | 0.688112 | 5.4:+14056432 | None:intergenic |
| GTGGCTGTAGAGGTCACTGG+TGG | 0.707904 | 5.4:-14057411 | MS.gene59491:CDS |
| GAATTAGGCTTCAATCCCGG+TGG | 0.713172 | 5.4:-14056447 | MS.gene59491:CDS |
| GTATGTTAAAGAAATCGAGG+AGG | 0.749911 | 5.4:-14058284 | MS.gene59491:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAAAATTATAAAATAACC+TGG | + | chr5.4:14056833-14056852 | None:intergenic | 10.0% |
| !!! | AATATATAGTATTGATTTAT+AGG | - | chr5.4:14056521-14056540 | MS.gene59491:intron | 10.0% |
| !! | AAGATTAATAAGCAAAAAAT+TGG | + | chr5.4:14056731-14056750 | None:intergenic | 15.0% |
| !! | ATTAATCATGTGTAAAAATA+TGG | + | chr5.4:14057137-14057156 | None:intergenic | 15.0% |
| !! | ATTATTATAGTAGTATTATG+AGG | - | chr5.4:14057390-14057409 | MS.gene59491:CDS | 15.0% |
| !! | TATGTATATGTTATAGTAAA+AGG | + | chr5.4:14056493-14056512 | None:intergenic | 15.0% |
| !! | TGTATAAAAAACTATATTTC+AGG | - | chr5.4:14057550-14057569 | MS.gene59491:intron | 15.0% |
| !! | TTCTTCAAGAAATATAATAA+AGG | + | chr5.4:14057696-14057715 | None:intergenic | 15.0% |
| !!! | ATAGTATTATGTATTTTTTG+TGG | - | chr5.4:14058107-14058126 | MS.gene59491:CDS | 15.0% |
| !!! | GTTCTCTATTTTTTTTTTTT+TGG | - | chr5.4:14058051-14058070 | MS.gene59491:CDS | 15.0% |
| !!! | TAATGATTTTGAATTTTACT+AGG | - | chr5.4:14058134-14058153 | MS.gene59491:intron | 15.0% |
| !!! | TATTTTTACACATGATTAAT+CGG | - | chr5.4:14057137-14057156 | MS.gene59491:intron | 15.0% |
| !!! | TTAATTCATATTCAATTTTG+TGG | + | chr5.4:14057087-14057106 | None:intergenic | 15.0% |
| !! | AATACAAGATTAACATAAAC+AGG | - | chr5.4:14057899-14057918 | MS.gene59491:intron | 20.0% |
| !! | AATTCACTTGAATAAATGAT+TGG | - | chr5.4:14056983-14057002 | MS.gene59491:intron | 20.0% |
| !! | ATACAAGATTAACATAAACA+GGG | - | chr5.4:14057900-14057919 | MS.gene59491:intron | 20.0% |
| !! | ATTATAAAATAACCTGGTAA+AGG | + | chr5.4:14056827-14056846 | None:intergenic | 20.0% |
| !! | CTAGATTAAGTTAAAGATTA+TGG | - | chr5.4:14057011-14057030 | MS.gene59491:intron | 20.0% |
| !! | TCATTCATTTCAATTGATAA+GGG | - | chr5.4:14057736-14057755 | MS.gene59491:intron | 20.0% |
| !!! | ATATAGTATTGATTTATAGG+TGG | - | chr5.4:14056524-14056543 | MS.gene59491:intron | 20.0% |
| !!! | TATTTTGAATTAGGATTCAT+TGG | - | chr5.4:14057418-14057437 | MS.gene59491:CDS | 20.0% |
| ! | AGTGTTTGAATTATTATGGT+TGG | + | chr5.4:14057672-14057691 | None:intergenic | 25.0% |
| ! | ATAATCAAGATATTAACGTG+TGG | - | chr5.4:14056866-14056885 | MS.gene59491:CDS | 25.0% |
| ! | CATAATCAACTGCAAAAATA+TGG | - | chr5.4:14056958-14056977 | MS.gene59491:intron | 25.0% |
| ! | CATGATTTAATTACCTTGTT+TGG | + | chr5.4:14057474-14057493 | None:intergenic | 25.0% |
| ! | CTCATTCATTTCAATTGATA+AGG | - | chr5.4:14057735-14057754 | MS.gene59491:intron | 25.0% |
| ! | TAGATTGTTACTAAATCATG+AGG | + | chr5.4:14057360-14057379 | None:intergenic | 25.0% |
| ! | TTATGTACAAAAATGTTTCG+TGG | - | chr5.4:14056904-14056923 | MS.gene59491:intron | 25.0% |
| !!! | AATTAATTTGTACCAAAGTG+TGG | + | chr5.4:14057648-14057667 | None:intergenic | 25.0% |
| !!! | AGGAAGTGTTTGAATTATTA+TGG | + | chr5.4:14057676-14057695 | None:intergenic | 25.0% |
| !!! | ATGTAGTTTGTTTTTGTCAA+AGG | - | chr5.4:14057040-14057059 | MS.gene59491:CDS | 25.0% |
| !!! | GAGGTGTTTTATTTTGAATT+AGG | - | chr5.4:14057409-14057428 | MS.gene59491:CDS | 25.0% |
| !!! | TTTTTTGTTTTGAGAAACAG+AGG | - | chr5.4:14056764-14056783 | MS.gene59491:intron | 25.0% |
| AAAACAGCTGTTGAATTATG+TGG | - | chr5.4:14056646-14056665 | MS.gene59491:intron | 30.0% | |
| AAACAGGGAACTAATGAAAT+TGG | - | chr5.4:14057915-14057934 | MS.gene59491:intron | 30.0% | |
| AAGAGTTATCAAACTTGAGA+GGG | + | chr5.4:14057810-14057829 | None:intergenic | 30.0% | |
| AGAGTATGTTAAAGAAATCG+AGG | - | chr5.4:14056367-14056386 | MS.gene59491:CDS | 30.0% | |
| ATATGTTGAACTCTATGCTA+AGG | - | chr5.4:14058002-14058021 | MS.gene59491:intron | 30.0% | |
| CATAGAGTTCAACATATTTG+CGG | + | chr5.4:14057999-14058018 | None:intergenic | 30.0% | |
| CATTTCAATTGATAAGGGTA+AGG | - | chr5.4:14057741-14057760 | MS.gene59491:intron | 30.0% | |
| TAAGAGTTATCAAACTTGAG+AGG | + | chr5.4:14057811-14057830 | None:intergenic | 30.0% | |
| TATATGTATTTCAGCTAGCT+GGG | - | chr5.4:14057217-14057236 | MS.gene59491:CDS | 30.0% | |
| TGATTCCTTATAGAACCATT+TGG | + | chr5.4:14056592-14056611 | None:intergenic | 30.0% | |
| TTATATGTATTTCAGCTAGC+TGG | - | chr5.4:14057216-14057235 | MS.gene59491:CDS | 30.0% | |
| AAAGATCGCTCTAACTTTGA+AGG | - | chr5.4:14057769-14057788 | MS.gene59491:intron | 35.0% | |
| ATATGTATTTCAGCTAGCTG+GGG | - | chr5.4:14057218-14057237 | MS.gene59491:CDS | 35.0% | |
| ATGTACTAGTACCTTTCTTC+CGG | + | chr5.4:14057289-14057308 | None:intergenic | 35.0% | |
| CACAAGAAACTCTCTGAATT+AGG | - | chr5.4:14058192-14058211 | MS.gene59491:intron | 35.0% | |
| GTATGTTAAAGAAATCGAGG+AGG | - | chr5.4:14056370-14056389 | MS.gene59491:CDS | 35.0% | |
| TTATCGTTCTCAATTGGCTA+AGG | - | chr5.4:14058233-14058252 | MS.gene59491:CDS | 35.0% | |
| ! | AAGAGAGATCTTTTATCGCA+TGG | - | chr5.4:14057585-14057604 | MS.gene59491:intron | 35.0% |
| ! | AGAGAGATCTTTTATCGCAT+GGG | - | chr5.4:14057586-14057605 | MS.gene59491:intron | 35.0% |
| ! | TAATTACCTTGTTTGGCATC+TGG | + | chr5.4:14057467-14057486 | None:intergenic | 35.0% |
| AAAGACATTGTAGCTCTCTC+CGG | - | chr5.4:14057619-14057638 | MS.gene59491:intron | 40.0% | |
| AAGGTCCGCATATGAAACTT+TGG | + | chr5.4:14056808-14056827 | None:intergenic | 40.0% | |
| ACACCCCAAAGTTTCATATG+CGG | - | chr5.4:14056800-14056819 | MS.gene59491:intron | 40.0% | |
| ACGACGCAAAAACAAGAACA+GGG | - | chr5.4:14056563-14056582 | MS.gene59491:intron | 40.0% | |
| AGGTCCGCATATGAAACTTT+GGG | + | chr5.4:14056807-14056826 | None:intergenic | 40.0% | |
| ATTGAAGCTTCCTACAGACA+AGG | - | chr5.4:14057951-14057970 | MS.gene59491:intron | 40.0% | |
| ATTTATAGGTGGCATGATGC+TGG | - | chr5.4:14056535-14056554 | MS.gene59491:intron | 40.0% | |
| CCAACTATTCACTTTGTTCC+CGG | - | chr5.4:14057267-14057286 | MS.gene59491:intron | 40.0% | |
| GAATTATGTGGTCAGTGAGA+CGG | - | chr5.4:14056658-14056677 | MS.gene59491:CDS | 40.0% | |
| GATATTAACGTGTGGAGTCA+TGG | - | chr5.4:14056874-14056893 | MS.gene59491:CDS | 40.0% | |
| TACGACGCAAAAACAAGAAC+AGG | - | chr5.4:14056562-14056581 | MS.gene59491:intron | 40.0% | |
| TCAACATATTTGCGGAATGC+AGG | + | chr5.4:14057991-14058010 | None:intergenic | 40.0% | |
| TCATTGGAATCTCCACAAGA+AGG | - | chr5.4:14057434-14057453 | MS.gene59491:intron | 40.0% | |
| TCTGAATTAGGCTTCAATCC+CGG | - | chr5.4:14058204-14058223 | MS.gene59491:intron | 40.0% | |
| TGGCAGTTATCGTTCTCAAT+TGG | - | chr5.4:14058227-14058246 | MS.gene59491:CDS | 40.0% | |
| TGTACTAGTACCTTTCTTCC+GGG | + | chr5.4:14057288-14057307 | None:intergenic | 40.0% | |
| TTGAGAAACAGAGGAAGTGA+AGG | - | chr5.4:14056773-14056792 | MS.gene59491:intron | 40.0% | |
| ! | GCTCTAACTTTGAAGGTCAA+TGG | - | chr5.4:14057776-14057795 | MS.gene59491:intron | 40.0% |
| CAATTGGCTAAGGCAGCTTT+AGG | - | chr5.4:14058243-14058262 | MS.gene59491:CDS | 45.0% | |
| CCGGGAACAAAGTGAATAGT+TGG | + | chr5.4:14057270-14057289 | None:intergenic | 45.0% | |
| CCTTGCACGTGTGCTAAAAA+GGG | - | chr5.4:14057161-14057180 | MS.gene59491:intron | 45.0% | |
| CGACGCAAAAACAAGAACAG+GGG | - | chr5.4:14056564-14056583 | MS.gene59491:intron | 45.0% | |
| CTGAACCATGCTGCTAACAA+GGG | - | chr5.4:14056619-14056638 | MS.gene59491:intron | 45.0% | |
| GACGCAAAAACAAGAACAGG+GGG | - | chr5.4:14056565-14056584 | MS.gene59491:intron | 45.0% | |
| GGTCCGCATATGAAACTTTG+GGG | + | chr5.4:14056806-14056825 | None:intergenic | 45.0% | |
| TACGCTAATCGTAGCATGAG+AGG | + | chr5.4:14056440-14056459 | None:intergenic | 45.0% | |
| TCACTTTGTTCCCGGAAGAA+AGG | - | chr5.4:14057275-14057294 | MS.gene59491:intron | 45.0% | |
| TCCTTGCACGTGTGCTAAAA+AGG | - | chr5.4:14057160-14057179 | MS.gene59491:intron | 45.0% | |
| TGAGCTCAAGTAAGTAACCC+AGG | + | chr5.4:14058296-14058315 | None:intergenic | 45.0% | |
| TTCATATGCGGACCTTTACC+AGG | - | chr5.4:14056812-14056831 | MS.gene59491:intron | 45.0% | |
| TTGAGAACGATAACTGCCAC+CGG | + | chr5.4:14058226-14058245 | None:intergenic | 45.0% | |
| ! | GGGGTCCAAATGGTTCTATA+AGG | - | chr5.4:14056584-14056603 | MS.gene59491:intron | 45.0% |
| ! | TACCTTGTTTGGCATCTGGA+AGG | + | chr5.4:14057463-14057482 | None:intergenic | 45.0% |
| ! | TCAACTAGAGCCTTGTCTGT+AGG | + | chr5.4:14057964-14057983 | None:intergenic | 45.0% |
| !! | AAAATTAATTAAACAAATTA+AGG | + | chr5.4:14056690-14056709 | None:intergenic | 5.0% |
| ACAAGAACAGGGGGTCCAAA+TGG | - | chr5.4:14056574-14056593 | MS.gene59491:intron | 50.0% | |
| ACCCAGGATCACAACAGTTG+AGG | + | chr5.4:14058280-14058299 | None:intergenic | 50.0% | |
| ATTTCAGCTAGCTGGGGTTG+TGG | - | chr5.4:14057224-14057243 | MS.gene59491:CDS | 50.0% | |
| GAATTAGGCTTCAATCCCGG+TGG | - | chr5.4:14058207-14058226 | MS.gene59491:intron | 50.0% | |
| GCCTCAACTGTTGTGATCCT+GGG | - | chr5.4:14058276-14058295 | MS.gene59491:CDS | 50.0% | |
| GCTGAACCATGCTGCTAACA+AGG | - | chr5.4:14056618-14056637 | MS.gene59491:intron | 50.0% | |
| TCAAGCCCTTGTTAGCAGCA+TGG | + | chr5.4:14056627-14056646 | None:intergenic | 50.0% | |
| TGAGAACGATAACTGCCACC+GGG | + | chr5.4:14058225-14058244 | None:intergenic | 50.0% | |
| TGCCTCAACTGTTGTGATCC+TGG | - | chr5.4:14058275-14058294 | MS.gene59491:CDS | 50.0% | |
| TTATGTGGTCAGTGAGACGG+TGG | - | chr5.4:14056661-14056680 | MS.gene59491:CDS | 50.0% | |
| TTGTACCAAAGTGTGGCCTC+CGG | + | chr5.4:14057641-14057660 | None:intergenic | 50.0% | |
| !! | CCCTTTTTAGCACACGTGCA+AGG | + | chr5.4:14057164-14057183 | None:intergenic | 50.0% |
| !! | GGCTAAGGCAGCTTTAGGAA+TGG | - | chr5.4:14058248-14058267 | MS.gene59491:CDS | 50.0% |
| CGCCTTCCAGATGCCAAACA+AGG | - | chr5.4:14057458-14057477 | MS.gene59491:intron | 55.0% | |
| GACATTGTAGCTCTCTCCGG+AGG | - | chr5.4:14057622-14057641 | MS.gene59491:intron | 55.0% | |
| GTTGTGGCTGTAGAGGTCAC+TGG | - | chr5.4:14057240-14057259 | MS.gene59491:intron | 55.0% | |
| TCTGGAAGGCGACCTTCTTG+TGG | + | chr5.4:14057449-14057468 | None:intergenic | 55.0% | |
| AGCTGGGGTTGTGGCTGTAG+AGG | - | chr5.4:14057233-14057252 | MS.gene59491:intron | 60.0% | |
| GTGGCTGTAGAGGTCACTGG+TGG | - | chr5.4:14057243-14057262 | MS.gene59491:intron | 60.0% | |
| TCTCTCCGGAGGCCACACTT+TGG | - | chr5.4:14057633-14057652 | MS.gene59491:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 14056344 | 14058332 | 14056344 | ID=MS.gene59491 |
| chr5.4 | mRNA | 14056344 | 14058332 | 14056344 | ID=MS.gene59491.t1;Parent=MS.gene59491 |
| chr5.4 | exon | 14058220 | 14058332 | 14058220 | ID=MS.gene59491.t1.exon1;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14058220 | 14058332 | 14058220 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14058009 | 14058133 | 14058009 | ID=MS.gene59491.t1.exon2;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14058009 | 14058133 | 14058009 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14057843 | 14057892 | 14057843 | ID=MS.gene59491.t1.exon3;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14057843 | 14057892 | 14057843 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14057380 | 14057445 | 14057380 | ID=MS.gene59491.t1.exon4;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14057380 | 14057445 | 14057380 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14057197 | 14057245 | 14057197 | ID=MS.gene59491.t1.exon5;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14057197 | 14057245 | 14057197 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14057022 | 14057104 | 14057022 | ID=MS.gene59491.t1.exon6;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14057022 | 14057104 | 14057022 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14056840 | 14056919 | 14056840 | ID=MS.gene59491.t1.exon7;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14056840 | 14056919 | 14056840 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14056653 | 14056755 | 14056653 | ID=MS.gene59491.t1.exon8;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14056653 | 14056755 | 14056653 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| chr5.4 | exon | 14056344 | 14056520 | 14056344 | ID=MS.gene59491.t1.exon9;Parent=MS.gene59491.t1 |
| chr5.4 | CDS | 14056344 | 14056520 | 14056344 | ID=cds.MS.gene59491.t1;Parent=MS.gene59491.t1 |
| Gene Sequence |
| Protein sequence |
