Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59553.t1 | XP_013444640.2 | 84.3 | 319 | 17 | 1 | 1 | 286 | 1 | 319 | 1.40E-152 | 548.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59553.t1 | Q9M365 | 62.6 | 262 | 98 | 0 | 25 | 286 | 98 | 359 | 1.9e-97 | 357.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59553.t1 | A0A1S2YVP8 | 78.8 | 320 | 34 | 2 | 1 | 286 | 1 | 320 | 2.3e-141 | 511.1 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05265 | MS.gene59553 | 0.80334 | 3.65E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59553.t1 | MTR_8g027735 | 83.276 | 293 | 16 | 1 | 1 | 260 | 1 | 293 | 1.56e-180 | 499 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59553.t1 | AT3G61730 | 62.595 | 262 | 98 | 0 | 25 | 286 | 98 | 359 | 1.71e-124 | 359 |
| MS.gene59553.t1 | AT5G36000 | 59.160 | 262 | 107 | 0 | 25 | 286 | 94 | 355 | 3.55e-118 | 343 |
| MS.gene59553.t1 | AT3G62500 | 49.390 | 164 | 62 | 3 | 96 | 259 | 178 | 320 | 3.76e-43 | 151 |
| MS.gene59553.t1 | AT3G62500 | 49.390 | 164 | 62 | 3 | 96 | 259 | 178 | 320 | 4.34e-43 | 152 |
Find 78 sgRNAs with CRISPR-Local
Find 212 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACTCACGGTTGTTGCTTTC+TGG | 0.121172 | 8.4:-68507240 | MS.gene59553:CDS |
| GACTGAGATAGCGAAGTTTC+TGG | 0.200830 | 8.4:-68508242 | MS.gene59553:intron |
| CTCTGTGAAGACTACGAAAA+TGG | 0.226003 | 8.4:-68506842 | MS.gene59553:CDS |
| CTATCATGGATGATGCTATT+TGG | 0.269492 | 8.4:-68508168 | MS.gene59553:CDS |
| GATATCAAGAAACGAGCTTA+TGG | 0.282438 | 8.4:-68506788 | MS.gene59553:CDS |
| AAGCTCTACACTTCAGCTTT+TGG | 0.288606 | 8.4:-68508082 | MS.gene59553:intron |
| GTACCAGCAATCCAGATTCC+AGG | 0.388870 | 8.4:+68507206 | None:intergenic |
| AAACCTGGAATCTGGATTGC+TGG | 0.401140 | 8.4:-68507209 | MS.gene59553:intron |
| ACAACATTAAACCTGGAATC+TGG | 0.402861 | 8.4:-68507217 | MS.gene59553:CDS |
| ATGAAAAGCAATCATGGTCT+TGG | 0.408754 | 8.4:+68506251 | None:intergenic |
| TTTGATTACAAGTCATGGAT+TGG | 0.411304 | 8.4:-68506294 | MS.gene59553:CDS |
| ATATCAAGAAACGAGCTTAT+GGG | 0.412617 | 8.4:-68506787 | MS.gene59553:CDS |
| GGATTGGGAAGGATAATTAC+TGG | 0.420053 | 8.4:-68506278 | MS.gene59553:CDS |
| AAGACTACGAAAATGGGAAC+TGG | 0.425872 | 8.4:-68506835 | MS.gene59553:CDS |
| ATGGTTCCGCCGTGCTATCA+TGG | 0.453543 | 8.4:-68508182 | MS.gene59553:CDS |
| CCAAGCTATGAGGGCAGGAC+CGG | 0.453746 | 8.4:-68505530 | MS.gene59553:CDS |
| CTCCTGCTGTCGGAACTTGT+AGG | 0.455095 | 8.4:+68507959 | None:intergenic |
| CACTTGAATGCCACAGGTGG+AGG | 0.462347 | 8.4:+68508109 | None:intergenic |
| CTTCGCCGGTGGCAGTTCTC+CGG | 0.464227 | 8.4:+68509264 | None:intergenic |
| TTGATTACAAGTCATGGATT+GGG | 0.468371 | 8.4:-68506293 | MS.gene59553:CDS |
| TCTGTGAAGACTACGAAAAT+GGG | 0.468614 | 8.4:-68506841 | MS.gene59553:CDS |
| TGCTGCATGAAAAGCAATCA+TGG | 0.479901 | 8.4:+68506245 | None:intergenic |
| GTTAAAGAAAGAAGAAAGCA+TGG | 0.485219 | 8.4:-68507276 | MS.gene59553:CDS |
| CAAGTATTGAGGTCACAAAC+CGG | 0.486887 | 8.4:+68507063 | None:intergenic |
| AAACGAGCTTATGGGGCTGC+TGG | 0.488804 | 8.4:-68506779 | MS.gene59553:CDS |
| CGGTATTTGATTACAAGTCA+TGG | 0.490207 | 8.4:-68506299 | MS.gene59553:CDS |
| GAAAATTCAGTCTCTCTGTC+AGG | 0.492809 | 8.4:+68507306 | None:intergenic |
| CCGGTCCTGCCCTCATAGCT+TGG | 0.493687 | 8.4:+68505530 | None:intergenic |
| CTGGCGAGTTCTTCTACGTC+TGG | 0.501579 | 8.4:-68506734 | MS.gene59553:intron |
| TCTGCAGCTTGTGCGATGCC+CGG | 0.502062 | 8.4:-68507082 | MS.gene59553:CDS |
| AATGCCACAGGTGGAGGAGA+TGG | 0.508135 | 8.4:+68508115 | None:intergenic |
| TCTTCTTTCTTTAACTCCCC+CGG | 0.510064 | 8.4:+68507284 | None:intergenic |
| CGGTGGCAGTTCTCCGGCGT+CGG | 0.514667 | 8.4:+68509270 | None:intergenic |
| ATGTGAAGTACCAAGCTATG+AGG | 0.516901 | 8.4:-68505540 | MS.gene59553:CDS |
| TGGCAGTTCTCCGGCGTCGG+AGG | 0.518218 | 8.4:+68509273 | None:intergenic |
| CTCCACCTGTGGCATTCAAG+TGG | 0.519260 | 8.4:-68508108 | MS.gene59553:CDS |
| CTCCTACAAGTTCCGACAGC+AGG | 0.520835 | 8.4:-68507961 | MS.gene59553:CDS |
| ACTAATTTACAAGAAAATCA+AGG | 0.528332 | 8.4:-68506213 | MS.gene59553:intron |
| TTGCTCCACTTGAATGCCAC+AGG | 0.532015 | 8.4:+68508103 | None:intergenic |
| GTGGAGGAGATGGAACTTGA+AGG | 0.535718 | 8.4:+68508125 | None:intergenic |
| AATTACCATCACAAGTATTG+AGG | 0.538205 | 8.4:+68507052 | None:intergenic |
| TATAGGAACAATGCAGACAT+TGG | 0.539902 | 8.4:-68506888 | MS.gene59553:intron |
| AACTGGGATTACGAGGTTGT+AGG | 0.542235 | 8.4:-68506818 | MS.gene59553:CDS |
| TGAAAAGCAATCATGGTCTT+GGG | 0.544175 | 8.4:+68506252 | None:intergenic |
| AACGCTACTTCCTCCGACGC+CGG | 0.546509 | 8.4:-68509283 | MS.gene59553:CDS |
| TTTCTGGACAACATTAAACC+TGG | 0.556196 | 8.4:-68507224 | MS.gene59553:CDS |
| TGATAGCACGGCGGAACCAT+CGG | 0.557930 | 8.4:+68508185 | None:intergenic |
| TTACGTCGGATTCGCTTCGC+CGG | 0.558356 | 8.4:+68509250 | None:intergenic |
| CAATGCAGACATTGGATGCA+AGG | 0.559581 | 8.4:-68506880 | MS.gene59553:CDS |
| CAAGCTATGAGGGCAGGACC+GGG | 0.564131 | 8.4:-68505529 | MS.gene59553:CDS |
| CGTCGGATTCGCTTCGCCGG+TGG | 0.564375 | 8.4:+68509253 | None:intergenic |
| AAGTACCAAGCTATGAGGGC+AGG | 0.567054 | 8.4:-68505535 | MS.gene59553:CDS |
| GAGGGCCACTGAAGAATCAA+AGG | 0.570525 | 8.4:+68507328 | None:intergenic |
| CTCCACTTGAATGCCACAGG+TGG | 0.571927 | 8.4:+68508106 | None:intergenic |
| AGTTCCATCTCCTCCACCTG+TGG | 0.576848 | 8.4:-68508119 | MS.gene59553:CDS |
| TGGAAAGTCTCTGATAATGC+TGG | 0.577477 | 8.4:-68508218 | MS.gene59553:CDS |
| TGTGAAGTACCAAGCTATGA+GGG | 0.584398 | 8.4:-68505539 | MS.gene59553:CDS |
| TATCAAGAAACGAGCTTATG+GGG | 0.585752 | 8.4:-68506786 | MS.gene59553:CDS |
| CTATCAGATTGGATGCGCAT+CGG | 0.586986 | 8.4:-68507359 | MS.gene59553:intron |
| CAATGTGCTTCTCCTGCTGT+CGG | 0.593050 | 8.4:+68507949 | None:intergenic |
| CAGACGTAGAAGAACTCGCC+AGG | 0.599890 | 8.4:+68506735 | None:intergenic |
| AAGTATTGAGGTCACAAACC+GGG | 0.600506 | 8.4:+68507064 | None:intergenic |
| TGTGACCTCAATACTTGTGA+TGG | 0.607442 | 8.4:-68507057 | MS.gene59553:intron |
| GAGATAGCGAAGTTTCTGGA+TGG | 0.611982 | 8.4:-68508238 | MS.gene59553:intron |
| AATTCAGTCTCTCTGTCAGG+AGG | 0.618594 | 8.4:+68507309 | None:intergenic |
| CGACAGCAGGAGAAGCACAT+TGG | 0.619455 | 8.4:-68507948 | MS.gene59553:intron |
| GAAACTATGTTGAAGACTCA+CGG | 0.621215 | 8.4:-68507254 | MS.gene59553:CDS |
| TGCTGGCAGCGACAAACCGA+TGG | 0.623760 | 8.4:-68508201 | MS.gene59553:CDS |
| TAGCATCATCCATGATAGCA+CGG | 0.625465 | 8.4:+68508173 | None:intergenic |
| TTACAAGTCATGGATTGGGA+AGG | 0.625946 | 8.4:-68506289 | MS.gene59553:CDS |
| CGACGCCGGAGAACTGCCAC+CGG | 0.630367 | 8.4:-68509269 | MS.gene59553:CDS |
| GCTATGAGGGCAGGACCGGG+TGG | 0.630925 | 8.4:-68505526 | MS.gene59553:CDS |
| ATTCAGTCTCTCTGTCAGGA+GGG | 0.634339 | 8.4:+68507310 | None:intergenic |
| CAGCTGCTGAGAGATTCTGA+TGG | 0.636966 | 8.4:+68505492 | None:intergenic |
| AGACTACGAAAATGGGAACT+GGG | 0.645326 | 8.4:-68506834 | MS.gene59553:CDS |
| ATGGAAACAACTTCTCCACC+CGG | 0.654340 | 8.4:+68505511 | None:intergenic |
| AAATGGGAACTGGGATTACG+AGG | 0.675337 | 8.4:-68506825 | MS.gene59553:CDS |
| CATCATCCATGATAGCACGG+CGG | 0.806408 | 8.4:+68508176 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATAAAATCTATAGAAAATA+TGG | + | chr8.4:68506476-68506495 | None:intergenic | 10.0% |
| !! | TATATAAAGAAAAAAACAAT+TGG | + | chr8.4:68509172-68509191 | None:intergenic | 10.0% |
| !!! | GTTTTAATCTTTAAATTAAA+TGG | - | chr8.4:68508462-68508481 | MS.gene59553:intron | 10.0% |
| !!! | TTAATTAAGTATTGGAAATT+TGG | + | chr8.4:68508977-68508996 | None:intergenic | 15.0% |
| !!! | TTTTCTATAACTTTTATATC+TGG | - | chr8.4:68506321-68506340 | MS.gene59553:intron | 15.0% |
| !! | AAATAGAATGGTAAACAAAT+TGG | + | chr8.4:68508877-68508896 | None:intergenic | 20.0% |
| !! | ACTAATTTACAAGAAAATCA+AGG | - | chr8.4:68508574-68508593 | MS.gene59553:intron | 20.0% |
| !! | AGAGTAGAAACATATATATA+TGG | - | chr8.4:68508202-68508221 | MS.gene59553:CDS | 20.0% |
| !! | ATCATTTGGGAATATTAAAA+GGG | - | chr8.4:68506988-68507007 | MS.gene59553:intron | 20.0% |
| !! | CTTAAAGAAAAACATTAACA+AGG | + | chr8.4:68508120-68508139 | None:intergenic | 20.0% |
| !! | GCTTGTATTGAAAAATAAAA+TGG | + | chr8.4:68509219-68509238 | None:intergenic | 20.0% |
| !! | TATAATATGTTCTATCAGAT+TGG | - | chr8.4:68507417-68507436 | MS.gene59553:intron | 20.0% |
| !! | TATCATTTGGGAATATTAAA+AGG | - | chr8.4:68506987-68507006 | MS.gene59553:intron | 20.0% |
| !! | TCAAATATTCGAAATCAAAT+CGG | + | chr8.4:68506073-68506092 | None:intergenic | 20.0% |
| !! | TTTCGAAATCAATGTTAATT+AGG | + | chr8.4:68506783-68506802 | None:intergenic | 20.0% |
| !!! | AGAAATTCAGTTTGAATTTT+CGG | - | chr8.4:68505758-68505777 | MS.gene59553:intron | 20.0% |
| !!! | AGTTAATGCTTTTTATCATT+TGG | - | chr8.4:68506974-68506993 | MS.gene59553:intron | 20.0% |
| !!! | ATTAACATTGATTTCGAAAT+TGG | - | chr8.4:68506784-68506803 | MS.gene59553:CDS | 20.0% |
| !!! | GTTAATGCTTTTTATCATTT+GGG | - | chr8.4:68506975-68506994 | MS.gene59553:intron | 20.0% |
| !!! | TTTTACTGATTTGTTTGTTT+TGG | + | chr8.4:68508718-68508737 | None:intergenic | 20.0% |
| !!! | TTTTATTTTTCAATACAAGC+AGG | - | chr8.4:68509219-68509238 | MS.gene59553:intron | 20.0% |
| !!! | TTTTGAAATTAATTTGTTCC+TGG | + | chr8.4:68508302-68508321 | None:intergenic | 20.0% |
| ! | ATCTTTAAATTAAATGGCAG+CGG | - | chr8.4:68508468-68508487 | MS.gene59553:intron | 25.0% |
| ! | GACTCAATAAAAATCTGTAT+TGG | + | chr8.4:68508771-68508790 | None:intergenic | 25.0% |
| ! | GTTATATTGTCAAAGATAAC+TGG | + | chr8.4:68507610-68507629 | None:intergenic | 25.0% |
| ! | TATAAGAATGAATCAGTCAA+TGG | + | chr8.4:68507309-68507328 | None:intergenic | 25.0% |
| ! | TATCCAAAAGAAGAAGATTT+GGG | + | chr8.4:68509071-68509090 | None:intergenic | 25.0% |
| ! | TATCTGGAAATAATCCATTA+AGG | - | chr8.4:68506337-68506356 | MS.gene59553:intron | 25.0% |
| ! | TGTGAATCTCACAATATATT+AGG | + | chr8.4:68506891-68506910 | None:intergenic | 25.0% |
| ! | TGTGGAGTTTAATTAAGTAT+TGG | + | chr8.4:68508985-68509004 | None:intergenic | 25.0% |
| ! | TTATCCAAAAGAAGAAGATT+TGG | + | chr8.4:68509072-68509091 | None:intergenic | 25.0% |
| ! | TTTAAATGCATGTTCCTTAA+TGG | + | chr8.4:68506354-68506373 | None:intergenic | 25.0% |
| ! | TTTGTACTTATTCTTATAGC+AGG | + | chr8.4:68508659-68508678 | None:intergenic | 25.0% |
| !! | AAATTTGGAAGAGTTAGTTT+GGG | + | chr8.4:68508962-68508981 | None:intergenic | 25.0% |
| !! | AGAATTTTGCATAAGCAATA+AGG | + | chr8.4:68507202-68507221 | None:intergenic | 25.0% |
| !! | ATGAATTATTCATGGTGTTA+AGG | + | chr8.4:68507790-68507809 | None:intergenic | 25.0% |
| !! | TGAATTATTCATGGTGTTAA+GGG | + | chr8.4:68507789-68507808 | None:intergenic | 25.0% |
| !!! | ATGAAGTTTTTGAGTTTTGA+CGG | - | chr8.4:68506024-68506043 | MS.gene59553:intron | 25.0% |
| !!! | CTTTTTACCAGTTTAAGTTA+AGG | - | chr8.4:68508233-68508252 | MS.gene59553:CDS | 25.0% |
| AACCACTGATGAATTATTCA+TGG | + | chr8.4:68507798-68507817 | None:intergenic | 30.0% | |
| AAGGGATATACAAAACTCAT+TGG | + | chr8.4:68507771-68507790 | None:intergenic | 30.0% | |
| AATGAATGTATAGATAGTCC+AGG | - | chr8.4:68508281-68508300 | MS.gene59553:intron | 30.0% | |
| AATGACATGACATTAGATTG+TGG | + | chr8.4:68508155-68508174 | None:intergenic | 30.0% | |
| AATGGTAAACAAATTGGATG+GGG | + | chr8.4:68508871-68508890 | None:intergenic | 30.0% | |
| AGAAGATAGTTACTAAGTTC+TGG | - | chr8.4:68508417-68508436 | MS.gene59553:intron | 30.0% | |
| AGAATGGTAAACAAATTGGA+TGG | + | chr8.4:68508873-68508892 | None:intergenic | 30.0% | |
| ATATCAAGAAACGAGCTTAT+GGG | - | chr8.4:68508000-68508019 | MS.gene59553:intron | 30.0% | |
| CAGTTATGGAAATGAATTTG+AGG | - | chr8.4:68506935-68506954 | MS.gene59553:intron | 30.0% | |
| CATTGTCAGATCTAGATTTA+GGG | + | chr8.4:68507161-68507180 | None:intergenic | 30.0% | |
| CGAAATTGGAAATTTCAGAT+GGG | - | chr8.4:68506798-68506817 | MS.gene59553:CDS | 30.0% | |
| CTGACAATGATATATGTACA+TGG | - | chr8.4:68507172-68507191 | MS.gene59553:intron | 30.0% | |
| GAAATTTGGAAGAGTTAGTT+TGG | + | chr8.4:68508963-68508982 | None:intergenic | 30.0% | |
| GAACTTAGTAACTATCTTCT+TGG | + | chr8.4:68508417-68508436 | None:intergenic | 30.0% | |
| GAATCAATTGTTGTAGCATA+GGG | + | chr8.4:68508745-68508764 | None:intergenic | 30.0% | |
| GAATGGTAAACAAATTGGAT+GGG | + | chr8.4:68508872-68508891 | None:intergenic | 30.0% | |
| GAGAAATGTTATTCAGGTAT+TGG | + | chr8.4:68508936-68508955 | None:intergenic | 30.0% | |
| GTTAAAGAAAGAAGAAAGCA+TGG | - | chr8.4:68507511-68507530 | MS.gene59553:intron | 30.0% | |
| TAGTAACTATCTTCTTGGAA+GGG | + | chr8.4:68508412-68508431 | None:intergenic | 30.0% | |
| TCAAACCTTCATTAAGCATT+CGG | + | chr8.4:68506513-68506532 | None:intergenic | 30.0% | |
| TCATTGTCAGATCTAGATTT+AGG | + | chr8.4:68507162-68507181 | None:intergenic | 30.0% | |
| TCGAAATTGGAAATTTCAGA+TGG | - | chr8.4:68506797-68506816 | MS.gene59553:CDS | 30.0% | |
| TGAATCAATTGTTGTAGCAT+AGG | + | chr8.4:68508746-68508765 | None:intergenic | 30.0% | |
| TTAATCCGAATGCTTAATGA+AGG | - | chr8.4:68506505-68506524 | MS.gene59553:intron | 30.0% | |
| TTACTTCAGTAATTGAGTCA+GGG | + | chr8.4:68508625-68508644 | None:intergenic | 30.0% | |
| TTAGTAACTATCTTCTTGGA+AGG | + | chr8.4:68508413-68508432 | None:intergenic | 30.0% | |
| TTATGGAAATGAATTTGAGG+TGG | - | chr8.4:68506938-68506957 | MS.gene59553:intron | 30.0% | |
| TTGATTACAAGTCATGGATT+GGG | - | chr8.4:68508494-68508513 | MS.gene59553:intron | 30.0% | |
| TTTACTTCAGTAATTGAGTC+AGG | + | chr8.4:68508626-68508645 | None:intergenic | 30.0% | |
| TTTGATTACAAGTCATGGAT+TGG | - | chr8.4:68508493-68508512 | MS.gene59553:intron | 30.0% | |
| ! | AATTACCATCACAAGTATTG+AGG | + | chr8.4:68507738-68507757 | None:intergenic | 30.0% |
| ! | TGAATTAGCTTGAATAGTTG+TGG | + | chr8.4:68509003-68509022 | None:intergenic | 30.0% |
| ! | TTTTTCCTTTGATTCTTCAG+TGG | - | chr8.4:68507454-68507473 | MS.gene59553:intron | 30.0% |
| !! | ATTCAGGTATTGGAATAGAA+GGG | + | chr8.4:68508926-68508945 | None:intergenic | 30.0% |
| !! | GATAAAAAGCATTAACTGTG+CGG | + | chr8.4:68506971-68506990 | None:intergenic | 30.0% |
| !! | TATTCAGGTATTGGAATAGA+AGG | + | chr8.4:68508927-68508946 | None:intergenic | 30.0% |
| !! | TGCTAGAAGCATTTGAAAAT+CGG | - | chr8.4:68505946-68505965 | MS.gene59553:intron | 30.0% |
| !!! | GATTTGTTTGTTTTGGTAAC+TGG | + | chr8.4:68508711-68508730 | None:intergenic | 30.0% |
| ACAACATTAAACCTGGAATC+TGG | - | chr8.4:68507570-68507589 | MS.gene59553:intron | 35.0% | |
| AGCTATAGAAAATTAGCGAG+TGG | + | chr8.4:68506389-68506408 | None:intergenic | 35.0% | |
| AGTTCCTTCATCTGTTATTG+CGG | - | chr8.4:68508826-68508845 | MS.gene59553:intron | 35.0% | |
| ATAGATTCCACACACAGTTA+TGG | - | chr8.4:68506921-68506940 | MS.gene59553:intron | 35.0% | |
| ATGAAAAGCAATCATGGTCT+TGG | + | chr8.4:68508539-68508558 | None:intergenic | 35.0% | |
| CACCATGAATAATTCATCAG+TGG | - | chr8.4:68507793-68507812 | MS.gene59553:intron | 35.0% | |
| CAGGTGTTTCACATCAAAAA+TGG | + | chr8.4:68508036-68508055 | None:intergenic | 35.0% | |
| CAGTAACTCTTGTCAATCTA+AGG | + | chr8.4:68507134-68507153 | None:intergenic | 35.0% | |
| CATGTTTCTCCTGCTTATAT+AGG | - | chr8.4:68507882-68507901 | MS.gene59553:intron | 35.0% | |
| CGGTATTTGATTACAAGTCA+TGG | - | chr8.4:68508488-68508507 | MS.gene59553:intron | 35.0% | |
| CTATCATGGATGATGCTATT+TGG | - | chr8.4:68506619-68506638 | MS.gene59553:intron | 35.0% | |
| GAAACTATGTTGAAGACTCA+CGG | - | chr8.4:68507533-68507552 | MS.gene59553:intron | 35.0% | |
| GATATCAAGAAACGAGCTTA+TGG | - | chr8.4:68507999-68508018 | MS.gene59553:intron | 35.0% | |
| GGGAAAGAGAAATGTTATTC+AGG | + | chr8.4:68508942-68508961 | None:intergenic | 35.0% | |
| GGGTTTGCGTTAGAATAATA+TGG | - | chr8.4:68507835-68507854 | MS.gene59553:intron | 35.0% | |
| TACATGCTTATCTCAGTTGA+TGG | + | chr8.4:68509026-68509045 | None:intergenic | 35.0% | |
| TATAGGAACAATGCAGACAT+TGG | - | chr8.4:68507899-68507918 | MS.gene59553:intron | 35.0% | |
| TATCAAGAAACGAGCTTATG+GGG | - | chr8.4:68508001-68508020 | MS.gene59553:intron | 35.0% | |
| TATTGGAATAGAAGGGAAGT+TGG | + | chr8.4:68508919-68508938 | None:intergenic | 35.0% | |
| TCAATGGCTGGATAAATTCT+AGG | + | chr8.4:68507293-68507312 | None:intergenic | 35.0% | |
| TCTGTGAAGACTACGAAAAT+GGG | - | chr8.4:68507946-68507965 | MS.gene59553:intron | 35.0% | |
| TGAAAAGCAATCATGGTCTT+GGG | + | chr8.4:68508538-68508557 | None:intergenic | 35.0% | |
| TGCATTGTTCCTATATAAGC+AGG | + | chr8.4:68507894-68507913 | None:intergenic | 35.0% | |
| TGCGTAACCTTAACTTAAAC+TGG | + | chr8.4:68508243-68508262 | None:intergenic | 35.0% | |
| TTCATTTCCATAACTGTGTG+TGG | + | chr8.4:68506931-68506950 | None:intergenic | 35.0% | |
| TTGAGGTTGGACAAATAGAA+TGG | + | chr8.4:68508889-68508908 | None:intergenic | 35.0% | |
| TTTCTGGACAACATTAAACC+TGG | - | chr8.4:68507563-68507582 | MS.gene59553:intron | 35.0% | |
| ! | AGTCCCAAATCTTCTTCTTT+TGG | - | chr8.4:68509065-68509084 | MS.gene59553:intron | 35.0% |
| ! | CATTTTTGATGTGAAACACC+TGG | - | chr8.4:68508034-68508053 | MS.gene59553:intron | 35.0% |
| ! | GTTACTGTTTTGTACTGCAA+GGG | - | chr8.4:68507815-68507834 | MS.gene59553:intron | 35.0% |
| AAGACTACGAAAATGGGAAC+TGG | - | chr8.4:68507952-68507971 | MS.gene59553:CDS | 40.0% | |
| AGAACCGCAATAACAGATGA+AGG | + | chr8.4:68508833-68508852 | None:intergenic | 40.0% | |
| AGAATGAATCAGTCAATGGC+TGG | + | chr8.4:68507305-68507324 | None:intergenic | 40.0% | |
| AGACTACGAAAATGGGAACT+GGG | - | chr8.4:68507953-68507972 | MS.gene59553:CDS | 40.0% | |
| AGTTGGACATCAATTGAGGT+TGG | + | chr8.4:68508902-68508921 | None:intergenic | 40.0% | |
| ATGAAGGAACTTGTCCTTCT+TGG | + | chr8.4:68508817-68508836 | None:intergenic | 40.0% | |
| CCAAGAGAAAGTGGAATGAT+CGG | + | chr8.4:68505607-68505626 | None:intergenic | 40.0% | |
| CTCCGAATGATTCTTGGTTT+GGG | - | chr8.4:68508334-68508353 | MS.gene59553:intron | 40.0% | |
| CTCTGTGAAGACTACGAAAA+TGG | - | chr8.4:68507945-68507964 | MS.gene59553:intron | 40.0% | |
| GAAAATTCAGTCTCTCTGTC+AGG | + | chr8.4:68507484-68507503 | None:intergenic | 40.0% | |
| GGAATATTAAAAGGGCAACC+CGG | - | chr8.4:68506996-68507015 | MS.gene59553:intron | 40.0% | |
| GGATTGGGAAGGATAATTAC+TGG | - | chr8.4:68508509-68508528 | MS.gene59553:intron | 40.0% | |
| GGTAACTGGTTAATATGCAG+CGG | + | chr8.4:68508697-68508716 | None:intergenic | 40.0% | |
| GTAACTGGTTAATATGCAGC+GGG | + | chr8.4:68508696-68508715 | None:intergenic | 40.0% | |
| TAGCATCATCCATGATAGCA+CGG | + | chr8.4:68506617-68506636 | None:intergenic | 40.0% | |
| TCCCCAAACCAAGAATCATT+CGG | + | chr8.4:68508339-68508358 | None:intergenic | 40.0% | |
| TCTTCTTTCTTTAACTCCCC+CGG | + | chr8.4:68507506-68507525 | None:intergenic | 40.0% | |
| TGCTGCATGAAAAGCAATCA+TGG | + | chr8.4:68508545-68508564 | None:intergenic | 40.0% | |
| TGTGACCTCAATACTTGTGA+TGG | - | chr8.4:68507730-68507749 | MS.gene59553:intron | 40.0% | |
| TTATTGCGGTTCTGCAAAGT+CGG | - | chr8.4:68508840-68508859 | MS.gene59553:intron | 40.0% | |
| ! | AAGCTCTACACTTCAGCTTT+TGG | - | chr8.4:68506705-68506724 | MS.gene59553:intron | 40.0% |
| ! | ACAGAGAGACTGAATTTTCC+GGG | - | chr8.4:68507485-68507504 | MS.gene59553:intron | 40.0% |
| ! | AGAAGATTGATGACTCACAC+AGG | + | chr8.4:68507103-68507122 | None:intergenic | 40.0% |
| ! | ATGTGAAGTACCAAGCTATG+AGG | - | chr8.4:68509247-68509266 | MS.gene59553:intron | 40.0% |
| ! | CATTTTCGTAGTCTTCACAG+AGG | + | chr8.4:68507947-68507966 | None:intergenic | 40.0% |
| ! | GACAGAGAGACTGAATTTTC+CGG | - | chr8.4:68507484-68507503 | MS.gene59553:intron | 40.0% |
| ! | GATTTGGGACTGTAGTAGAT+TGG | + | chr8.4:68509056-68509075 | None:intergenic | 40.0% |
| ! | GGTTACTGTTTTGTACTGCA+AGG | - | chr8.4:68507814-68507833 | MS.gene59553:intron | 40.0% |
| ! | TCCGAATGATTCTTGGTTTG+GGG | - | chr8.4:68508335-68508354 | MS.gene59553:intron | 40.0% |
| ! | TGGAAAGTCTCTGATAATGC+TGG | - | chr8.4:68506569-68506588 | MS.gene59553:intron | 40.0% |
| ! | TGTGAAGTACCAAGCTATGA+GGG | - | chr8.4:68509248-68509267 | MS.gene59553:intron | 40.0% |
| !! | AAGTATTGAGGTCACAAACC+GGG | + | chr8.4:68507726-68507745 | None:intergenic | 40.0% |
| !! | CAAGTATTGAGGTCACAAAC+CGG | + | chr8.4:68507727-68507746 | None:intergenic | 40.0% |
| !! | GAAGGTTTGATGACGACATT+TGG | - | chr8.4:68506523-68506542 | MS.gene59553:intron | 40.0% |
| !! | TTACAAGTCATGGATTGGGA+AGG | - | chr8.4:68508498-68508517 | MS.gene59553:intron | 40.0% |
| !!! | AGCAGATGGTTTTGTTACGT+CGG | + | chr8.4:68505554-68505573 | None:intergenic | 40.0% |
| AAACCTGGAATCTGGATTGC+TGG | - | chr8.4:68507578-68507597 | MS.gene59553:intron | 45.0% | |
| AAATGGGAACTGGGATTACG+AGG | - | chr8.4:68507962-68507981 | MS.gene59553:CDS | 45.0% | |
| AACTGGGATTACGAGGTTGT+AGG | - | chr8.4:68507969-68507988 | MS.gene59553:CDS | 45.0% | |
| AATTCAGTCTCTCTGTCAGG+AGG | + | chr8.4:68507481-68507500 | None:intergenic | 45.0% | |
| ATGGAAACAACTTCTCCACC+CGG | + | chr8.4:68509279-68509298 | None:intergenic | 45.0% | |
| ATTCAGTCTCTCTGTCAGGA+GGG | + | chr8.4:68507480-68507499 | None:intergenic | 45.0% | |
| CAATGCAGACATTGGATGCA+AGG | - | chr8.4:68507907-68507926 | MS.gene59553:intron | 45.0% | |
| CCAAACCAAGAATCATTCGG+AGG | + | chr8.4:68508336-68508355 | None:intergenic | 45.0% | |
| CCGATCATTCCACTTTCTCT+TGG | - | chr8.4:68505604-68505623 | MS.gene59553:intron | 45.0% | |
| CCTCCGAATGATTCTTGGTT+TGG | - | chr8.4:68508333-68508352 | MS.gene59553:intron | 45.0% | |
| CTATCAGATTGGATGCGCAT+CGG | - | chr8.4:68507428-68507447 | MS.gene59553:intron | 45.0% | |
| GAACATCGATGAACGCGTAT+AGG | + | chr8.4:68506740-68506759 | None:intergenic | 45.0% | |
| GACTGAGATAGCGAAGTTTC+TGG | - | chr8.4:68506545-68506564 | MS.gene59553:intron | 45.0% | |
| GAGAGAGAACCAAGAGAAAG+TGG | + | chr8.4:68505616-68505635 | None:intergenic | 45.0% | |
| GGGAAGTTGGACATCAATTG+AGG | + | chr8.4:68508906-68508925 | None:intergenic | 45.0% | |
| GTCAACTTACCAACAGTCAG+TGG | - | chr8.4:68508094-68508113 | MS.gene59553:CDS | 45.0% | |
| TGAAGCCTCCGAATGATTCT+TGG | - | chr8.4:68508328-68508347 | MS.gene59553:intron | 45.0% | |
| TTGGGACTGTAGTAGATTGG+TGG | + | chr8.4:68509053-68509072 | None:intergenic | 45.0% | |
| ! | AGAGAGACTGAATTTTCCGG+GGG | - | chr8.4:68507487-68507506 | MS.gene59553:intron | 45.0% |
| ! | CAGAGAGACTGAATTTTCCG+GGG | - | chr8.4:68507486-68507505 | MS.gene59553:intron | 45.0% |
| ! | GAGATAGCGAAGTTTCTGGA+TGG | - | chr8.4:68506549-68506568 | MS.gene59553:intron | 45.0% |
| ! | TTAACAAGGCCACTGACTGT+TGG | + | chr8.4:68508106-68508125 | None:intergenic | 45.0% |
| AAGTACCAAGCTATGAGGGC+AGG | - | chr8.4:68509252-68509271 | MS.gene59553:intron | 50.0% | |
| AGGAGAGTTGCAAGAGCAGA+TGG | + | chr8.4:68505568-68505587 | None:intergenic | 50.0% | |
| CAATGTGCTTCTCCTGCTGT+CGG | + | chr8.4:68506841-68506860 | None:intergenic | 50.0% | |
| CAGCTGCTGAGAGATTCTGA+TGG | + | chr8.4:68509298-68509317 | None:intergenic | 50.0% | |
| CATCATCCATGATAGCACGG+CGG | + | chr8.4:68506614-68506633 | None:intergenic | 50.0% | |
| CTCCAGTGTGTGTACCAAGA+AGG | - | chr8.4:68508800-68508819 | MS.gene59553:intron | 50.0% | |
| CTTCTTGGTACACACACTGG+AGG | + | chr8.4:68508802-68508821 | None:intergenic | 50.0% | |
| GAATGATCGGAGAGAAAGCG+AGG | + | chr8.4:68505594-68505613 | None:intergenic | 50.0% | |
| GAGGGCCACTGAAGAATCAA+AGG | + | chr8.4:68507462-68507481 | None:intergenic | 50.0% | |
| GTACACACACTGGAGGCAAA+GGG | + | chr8.4:68508795-68508814 | None:intergenic | 50.0% | |
| GTACCAGCAATCCAGATTCC+AGG | + | chr8.4:68507584-68507603 | None:intergenic | 50.0% | |
| GTCCTTCTTGGTACACACAC+TGG | + | chr8.4:68508805-68508824 | None:intergenic | 50.0% | |
| GTGGAGGAGATGGAACTTGA+AGG | + | chr8.4:68506665-68506684 | None:intergenic | 50.0% | |
| TCCCAAATGCTTCAGTGCAC+CGG | + | chr8.4:68507018-68507037 | None:intergenic | 50.0% | |
| TTGCTCCACTTGAATGCCAC+AGG | + | chr8.4:68506687-68506706 | None:intergenic | 50.0% | |
| !! | GACTCACGGTTGTTGCTTTC+TGG | - | chr8.4:68507547-68507566 | MS.gene59553:intron | 50.0% |
| AAACGAGCTTATGGGGCTGC+TGG | - | chr8.4:68508008-68508027 | MS.gene59553:intron | 55.0% | |
| AATGCCACAGGTGGAGGAGA+TGG | + | chr8.4:68506675-68506694 | None:intergenic | 55.0% | |
| AGTTCCATCTCCTCCACCTG+TGG | - | chr8.4:68506668-68506687 | MS.gene59553:intron | 55.0% | |
| ATGGTTCCGCCGTGCTATCA+TGG | - | chr8.4:68506605-68506624 | MS.gene59553:intron | 55.0% | |
| CACTTGAATGCCACAGGTGG+AGG | + | chr8.4:68506681-68506700 | None:intergenic | 55.0% | |
| CAGACGTAGAAGAACTCGCC+AGG | + | chr8.4:68508055-68508074 | None:intergenic | 55.0% | |
| CCCAAATGCTTCAGTGCACC+GGG | + | chr8.4:68507017-68507036 | None:intergenic | 55.0% | |
| CTCCACCTGTGGCATTCAAG+TGG | - | chr8.4:68506679-68506698 | MS.gene59553:intron | 55.0% | |
| CTCCACTTGAATGCCACAGG+TGG | + | chr8.4:68506684-68506703 | None:intergenic | 55.0% | |
| CTCCTACAAGTTCCGACAGC+AGG | - | chr8.4:68506826-68506845 | MS.gene59553:CDS | 55.0% | |
| CTCCTGCTGTCGGAACTTGT+AGG | + | chr8.4:68506831-68506850 | None:intergenic | 55.0% | |
| CTGGCGAGTTCTTCTACGTC+TGG | - | chr8.4:68508053-68508072 | MS.gene59553:intron | 55.0% | |
| GGTACACACACTGGAGGCAA+AGG | + | chr8.4:68508796-68508815 | None:intergenic | 55.0% | |
| TGATAGCACGGCGGAACCAT+CGG | + | chr8.4:68506605-68506624 | None:intergenic | 55.0% | |
| TTACGTCGGATTCGCTTCGC+CGG | + | chr8.4:68505540-68505559 | None:intergenic | 55.0% | |
| ! | ACCCGGTGCACTGAAGCATT+TGG | - | chr8.4:68507013-68507032 | MS.gene59553:intron | 55.0% |
| ! | CCCGGTGCACTGAAGCATTT+GGG | - | chr8.4:68507014-68507033 | MS.gene59553:intron | 55.0% |
| ! | CGACAGCAGGAGAAGCACAT+TGG | - | chr8.4:68506839-68506858 | MS.gene59553:CDS | 55.0% |
| AACGCTACTTCCTCCGACGC+CGG | - | chr8.4:68505504-68505523 | MS.gene59553:CDS | 60.0% | |
| CAAGCTATGAGGGCAGGACC+GGG | - | chr8.4:68509258-68509277 | MS.gene59553:CDS | 60.0% | |
| CCAAGCTATGAGGGCAGGAC+CGG | - | chr8.4:68509257-68509276 | MS.gene59553:CDS | 60.0% | |
| TCGGAGAGAAAGCGAGGACG+AGG | + | chr8.4:68505588-68505607 | None:intergenic | 60.0% | |
| TCTGCAGCTTGTGCGATGCC+CGG | - | chr8.4:68507705-68507724 | MS.gene59553:intron | 60.0% | |
| TGCTGGCAGCGACAAACCGA+TGG | - | chr8.4:68506586-68506605 | MS.gene59553:intron | 60.0% | |
| CCGGTCCTGCCCTCATAGCT+TGG | + | chr8.4:68509260-68509279 | None:intergenic | 65.0% | |
| CTTCGCCGGTGGCAGTTCTC+CGG | + | chr8.4:68505526-68505545 | None:intergenic | 65.0% | |
| CGACGCCGGAGAACTGCCAC+CGG | - | chr8.4:68505518-68505537 | MS.gene59553:CDS | 70.0% | |
| CGGTGGCAGTTCTCCGGCGT+CGG | + | chr8.4:68505520-68505539 | None:intergenic | 70.0% | |
| CGTCGGATTCGCTTCGCCGG+TGG | + | chr8.4:68505537-68505556 | None:intergenic | 70.0% | |
| GCTATGAGGGCAGGACCGGG+TGG | - | chr8.4:68509261-68509280 | MS.gene59553:CDS | 70.0% | |
| ! | TGGCAGTTCTCCGGCGTCGG+AGG | + | chr8.4:68505517-68505536 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.4 | gene | 68505486 | 68509323 | 68505486 | ID=MS.gene59553 |
| chr8.4 | mRNA | 68505486 | 68509323 | 68505486 | ID=MS.gene59553.t1;Parent=MS.gene59553 |
| chr8.4 | exon | 68509254 | 68509323 | 68509254 | ID=MS.gene59553.t1.exon1;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68509254 | 68509323 | 68509254 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68508083 | 68508253 | 68508083 | ID=MS.gene59553.t1.exon2;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68508083 | 68508253 | 68508083 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68507949 | 68507993 | 68507949 | ID=MS.gene59553.t1.exon3;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68507949 | 68507993 | 68507949 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68507210 | 68507374 | 68507210 | ID=MS.gene59553.t1.exon4;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68507210 | 68507374 | 68507210 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68507058 | 68507105 | 68507058 | ID=MS.gene59553.t1.exon5;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68507058 | 68507105 | 68507058 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68506735 | 68506905 | 68506735 | ID=MS.gene59553.t1.exon6;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68506735 | 68506905 | 68506735 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68506214 | 68506321 | 68506214 | ID=MS.gene59553.t1.exon7;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68506214 | 68506321 | 68506214 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| chr8.4 | exon | 68505486 | 68505568 | 68505486 | ID=MS.gene59553.t1.exon8;Parent=MS.gene59553.t1 |
| chr8.4 | CDS | 68505486 | 68505568 | 68505486 | ID=cds.MS.gene59553.t1;Parent=MS.gene59553.t1 |
| Gene Sequence |
| Protein sequence |
