Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59666.t1 | XP_024630906.1 | 82.4 | 380 | 12 | 1 | 1 | 325 | 40 | 419 | 6.50E-174 | 620.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59666.t1 | A0A396JV57 | 82.4 | 380 | 12 | 1 | 1 | 325 | 40 | 419 | 4.7e-174 | 620.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene052447 | MS.gene59666 | 0.814742 | 1.32E-51 | -1.69E-46 |
| MS.gene059458 | MS.gene59666 | 0.822048 | 2.92E-53 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59666.t1 | MTR_5g054550 | 60.355 | 169 | 53 | 6 | 332 | 492 | 1 | 163 | 1.30e-54 | 181 |
| MS.gene59666.t1 | MTR_4g074240 | 41.880 | 234 | 54 | 8 | 336 | 492 | 13 | 241 | 1.63e-40 | 146 |
| MS.gene59666.t1 | MTR_4g074240 | 41.423 | 239 | 53 | 9 | 336 | 492 | 13 | 246 | 2.15e-38 | 140 |
| MS.gene59666.t1 | MTR_4g055725 | 35.829 | 187 | 104 | 3 | 55 | 241 | 83 | 253 | 5.55e-32 | 124 |
| MS.gene59666.t1 | MTR_1g036290 | 70.588 | 51 | 15 | 0 | 441 | 491 | 59 | 109 | 9.87e-21 | 87.8 |
| MS.gene59666.t1 | MTR_1g036370 | 59.677 | 62 | 25 | 0 | 425 | 486 | 1 | 62 | 1.11e-19 | 84.0 |
| MS.gene59666.t1 | MTR_1g036380 | 63.462 | 52 | 19 | 0 | 442 | 493 | 1 | 52 | 4.88e-19 | 81.3 |
| MS.gene59666.t1 | MTR_4g117120 | 32.812 | 128 | 83 | 2 | 55 | 182 | 158 | 282 | 2.04e-13 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene59666.t1 | AT5G41980 | 40.171 | 234 | 134 | 3 | 20 | 252 | 11 | 239 | 5.97e-47 | 167 |
| MS.gene59666.t1 | AT5G28950 | 72.449 | 98 | 26 | 1 | 132 | 228 | 1 | 98 | 2.40e-43 | 150 |
| MS.gene59666.t1 | AT1G43722 | 33.191 | 235 | 147 | 3 | 35 | 259 | 51 | 285 | 9.03e-36 | 135 |
| MS.gene59666.t1 | AT3G07200 | 46.923 | 130 | 43 | 2 | 389 | 492 | 52 | 181 | 4.47e-29 | 113 |
| MS.gene59666.t1 | AT3G07200 | 46.923 | 130 | 43 | 2 | 389 | 492 | 52 | 181 | 4.47e-29 | 113 |
| MS.gene59666.t1 | AT3G07200 | 46.923 | 130 | 43 | 2 | 389 | 492 | 52 | 181 | 4.47e-29 | 113 |
| MS.gene59666.t1 | AT5G35695 | 36.923 | 195 | 52 | 6 | 198 | 332 | 25 | 208 | 1.16e-27 | 110 |
| MS.gene59666.t1 | AT5G48655 | 42.282 | 149 | 43 | 3 | 387 | 492 | 54 | 202 | 5.78e-27 | 108 |
| MS.gene59666.t1 | AT5G48655 | 42.282 | 149 | 43 | 3 | 387 | 492 | 54 | 202 | 5.78e-27 | 108 |
| MS.gene59666.t1 | AT5G48655 | 42.282 | 149 | 43 | 3 | 387 | 492 | 54 | 202 | 5.78e-27 | 108 |
| MS.gene59666.t1 | AT5G48655 | 42.282 | 149 | 43 | 3 | 387 | 492 | 54 | 202 | 5.78e-27 | 108 |
| MS.gene59666.t1 | AT5G48655 | 42.282 | 149 | 43 | 3 | 387 | 492 | 54 | 202 | 5.78e-27 | 108 |
| MS.gene59666.t1 | AT5G48655 | 42.282 | 149 | 43 | 3 | 387 | 492 | 54 | 202 | 5.78e-27 | 108 |
| MS.gene59666.t1 | AT5G28730 | 30.137 | 219 | 121 | 5 | 55 | 268 | 29 | 220 | 7.10e-24 | 102 |
| MS.gene59666.t1 | AT3G30525 | 33.962 | 106 | 64 | 2 | 160 | 259 | 1 | 106 | 3.52e-13 | 68.2 |
Find 83 sgRNAs with CRISPR-Local
Find 183 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GTAATTCGTCGTCGAGTTAA+TGG | 0.220577 | 5.4:+43152590 | None:intergenic |
| TTATACAATATCGAGCATTT+TGG | 0.240408 | 5.4:+43152381 | None:intergenic |
| TATATACATAAATCATTAAA+TGG | 0.273521 | 5.4:-43152551 | MS.gene59666:CDS |
| CGAATGTGAAACAACTTATA+AGG | 0.279276 | 5.4:-43149861 | MS.gene59666:CDS |
| CGTGCGGGCGAGGGCAATTT+CGG | 0.309273 | 5.4:-43150283 | MS.gene59666:CDS |
| TCATTATTGTCTTCATGAAT+AGG | 0.320777 | 5.4:+43151440 | None:intergenic |
| TGTTTGAAAAGTACTCATAT+TGG | 0.334249 | 5.4:+43150329 | None:intergenic |
| CCTTCAATTCGGGCTCAGTT+GGG | 0.341389 | 5.4:-43150201 | MS.gene59666:CDS |
| GACACATGCACTCTTTCCTT+TGG | 0.343811 | 5.4:-43150166 | MS.gene59666:CDS |
| CTCAATAGCACCTGATTTGA+TGG | 0.344546 | 5.4:-43152288 | MS.gene59666:CDS |
| AGCTGCTTGTAATTTCGATT+TGG | 0.365004 | 5.4:-43151999 | MS.gene59666:CDS |
| CAAAGCATCATTTAGCAACT+TGG | 0.377464 | 5.4:+43151931 | None:intergenic |
| ACCTTCAATTCGGGCTCAGT+TGG | 0.384211 | 5.4:-43150202 | MS.gene59666:CDS |
| AGCAGGAGGGACCTTCAATT+CGG | 0.390905 | 5.4:-43150212 | MS.gene59666:CDS |
| GATTGCATTGGAGCTATTGA+TGG | 0.391567 | 5.4:-43152103 | MS.gene59666:CDS |
| GCGGCTGATGAGAACCCTTC+TGG | 0.394834 | 5.4:-43150237 | MS.gene59666:CDS |
| CATTTAGCAACTTGGAATCA+TGG | 0.400539 | 5.4:+43151939 | None:intergenic |
| AACGACAAGATGCTAATCTA+TGG | 0.402295 | 5.4:-43151388 | MS.gene59666:CDS |
| TGTATAATTAGAAATACATT+TGG | 0.402713 | 5.4:-43152365 | MS.gene59666:CDS |
| AATCTATGGAGGACTAATAT+AGG | 0.403864 | 5.4:-43151374 | MS.gene59666:intron |
| CTCAGTTGGGGCATGACCTT+CGG | 0.404880 | 5.4:-43150188 | MS.gene59666:CDS |
| CCTCGCCCGCACGTAAATTC+TGG | 0.407760 | 5.4:+43150293 | None:intergenic |
| CCCAACTGAGCCCGAATTGA+AGG | 0.409434 | 5.4:+43150201 | None:intergenic |
| GTTGGTTTAGCCATCAAATC+AGG | 0.412864 | 5.4:+43152278 | None:intergenic |
| GCGTCGTTCTTACAGATTGT+CGG | 0.432319 | 5.4:-43152404 | MS.gene59666:CDS |
| CTTTAGTTGTCCTATATGCA+TGG | 0.433373 | 5.4:-43149992 | MS.gene59666:CDS |
| CCAGAATTTACGTGCGGGCG+AGG | 0.439736 | 5.4:-43150293 | MS.gene59666:CDS |
| GACTCGTTAGAATGTTCAAC+TGG | 0.440308 | 5.4:+43151485 | None:intergenic |
| ACATGCACTCTTTCCTTTGG+AGG | 0.450585 | 5.4:-43150163 | MS.gene59666:CDS |
| ACGAAAGGGCCCATGCATAT+AGG | 0.452466 | 5.4:+43149982 | None:intergenic |
| CATATTCCTGCATTGGTAAG+AGG | 0.460409 | 5.4:-43152076 | MS.gene59666:CDS |
| CACTTGCAGCAAATTGTGAC+CGG | 0.461965 | 5.4:+43152342 | None:intergenic |
| GCAGGAGGGACCTTCAATTC+GGG | 0.465154 | 5.4:-43150211 | MS.gene59666:CDS |
| TGCTAAATGATGCTTTGAAA+AGG | 0.482649 | 5.4:-43151925 | MS.gene59666:CDS |
| GATGCTTTGAAAAGGAAGAA+TGG | 0.484883 | 5.4:-43151917 | MS.gene59666:CDS |
| TTGTATCGAGACTGCTATCA+TGG | 0.490514 | 5.4:-43149917 | MS.gene59666:CDS |
| CATAACTTTCGAAAGACATC+AGG | 0.498455 | 5.4:+43152491 | None:intergenic |
| GAATGTGAAACAACTTATAA+GGG | 0.498929 | 5.4:-43149860 | MS.gene59666:CDS |
| TCGTCATTTCTTCAACGAAA+GGG | 0.499427 | 5.4:+43149968 | None:intergenic |
| GTCGTCATTTCTTCAACGAA+AGG | 0.500274 | 5.4:+43149967 | None:intergenic |
| TTTAGTTGTCCTATATGCAT+GGG | 0.501705 | 5.4:-43149991 | MS.gene59666:CDS |
| ATAAGCTCTCAATCAGTTGT+CGG | 0.504479 | 5.4:+43149829 | None:intergenic |
| ATTTAGCAACTTGGAATCAT+GGG | 0.505901 | 5.4:+43151940 | None:intergenic |
| TGAGAACCCTTCTGGTGAGC+AGG | 0.507531 | 5.4:-43150229 | MS.gene59666:CDS |
| AGTTCATGTACGTTCTTAGC+GGG | 0.515243 | 5.4:-43151976 | MS.gene59666:CDS |
| CGAGACTGCTATCATGGCTC+AGG | 0.515814 | 5.4:-43149911 | MS.gene59666:CDS |
| TCATGTACGTTCTTAGCGGG+TGG | 0.518115 | 5.4:-43151973 | MS.gene59666:CDS |
| TGATCACATACCTTGAAGTA+AGG | 0.519561 | 5.4:+43152212 | None:intergenic |
| CGACGACGAATTACAAGTAA+AGG | 0.521622 | 5.4:-43152581 | MS.gene59666:CDS |
| TTTGCAGGCACACTTGAGGT+TGG | 0.522108 | 5.4:+43152260 | None:intergenic |
| CATGTACGTTCTTAGCGGGT+GGG | 0.528431 | 5.4:-43151972 | MS.gene59666:CDS |
| TCTCGTCCTCTTACCAATGC+AGG | 0.530406 | 5.4:+43152070 | None:intergenic |
| TAATTAGAAATACATTTGGC+CGG | 0.538898 | 5.4:-43152361 | MS.gene59666:CDS |
| CTTCAATTCGGGCTCAGTTG+GGG | 0.542147 | 5.4:-43150200 | MS.gene59666:CDS |
| GTACGTTCTTAGCGGGTGGG+AGG | 0.544285 | 5.4:-43151969 | MS.gene59666:CDS |
| GAGTTCATGTACGTTCTTAG+CGG | 0.544979 | 5.4:-43151977 | MS.gene59666:CDS |
| TACGTTCTTAGCGGGTGGGA+GGG | 0.546796 | 5.4:-43151968 | MS.gene59666:CDS |
| GGTCCCTCCTGCTCACCAGA+AGG | 0.548904 | 5.4:+43150222 | None:intergenic |
| TGGTACACATATTCCTGCAT+TGG | 0.559514 | 5.4:-43152083 | MS.gene59666:CDS |
| ATAGGTAACATTGAAGATGA+AGG | 0.559893 | 5.4:+43151458 | None:intergenic |
| CAGAATTTACGTGCGGGCGA+GGG | 0.570515 | 5.4:-43150292 | MS.gene59666:CDS |
| CGTTATTGAAATTTCCGCAA+GGG | 0.574241 | 5.4:-43150118 | MS.gene59666:CDS |
| GTCCCTCCTGCTCACCAGAA+GGG | 0.589780 | 5.4:+43150223 | None:intergenic |
| ATGTTCAACTGGAAATTCAT+CGG | 0.590852 | 5.4:+43151496 | None:intergenic |
| AGCCTCGGCAAAAGCCCTTG+CGG | 0.594306 | 5.4:+43150104 | None:intergenic |
| TCATCATCAATGGCCTCCAA+AGG | 0.600608 | 5.4:+43150150 | None:intergenic |
| GAAGAAATGACGACAAGGTG+TGG | 0.600883 | 5.4:-43149958 | MS.gene59666:CDS |
| AGCAGTTATCGTGATCGTCA+TGG | 0.601808 | 5.4:-43152043 | MS.gene59666:CDS |
| GAACCCTTCTGGTGAGCAGG+AGG | 0.602906 | 5.4:-43150226 | MS.gene59666:CDS |
| ATAAATCTTGTATCCACCAA+AGG | 0.606437 | 5.4:+43152446 | None:intergenic |
| GAAAGAGTGCATGTGTCCGA+AGG | 0.614406 | 5.4:+43150172 | None:intergenic |
| GTTATCGTGATCGTCATGGA+AGG | 0.625280 | 5.4:-43152039 | MS.gene59666:CDS |
| ATTCTAGAAGAAATCGCTTG+AGG | 0.632419 | 5.4:-43150074 | MS.gene59666:CDS |
| AATTCATGCTTTAATGCACG+TGG | 0.633739 | 5.4:-43152657 | MS.gene59666:CDS |
| AACCCTTCTGGTGAGCAGGA+GGG | 0.633778 | 5.4:-43150225 | MS.gene59666:CDS |
| TAATACCAGAATTTACGTGC+GGG | 0.643130 | 5.4:-43150298 | MS.gene59666:CDS |
| TGATATCGCACACCTCGATG+TGG | 0.650124 | 5.4:+43151739 | None:intergenic |
| GACAAGATGCTAATCTATGG+AGG | 0.661637 | 5.4:-43151385 | MS.gene59666:CDS |
| ACGTTATTGAAATTTCCGCA+AGG | 0.666096 | 5.4:-43150119 | MS.gene59666:CDS |
| TGTCATTAATCGAATATCTG+CGG | 0.673067 | 5.4:-43150256 | MS.gene59666:CDS |
| CTAATACCAGAATTTACGTG+CGG | 0.694269 | 5.4:-43150299 | MS.gene59666:CDS |
| TCGTTGAAGAAATGACGACA+AGG | 0.708289 | 5.4:-43149963 | MS.gene59666:CDS |
| AATGGACTAAAAGTGCCCCA+CGG | 0.730602 | 5.4:-43151899 | MS.gene59666:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTATTAAAATAATTTTTTA+TGG | - | chr5.4:43150351-43150370 | MS.gene59666:intron | 0.0% |
| !! | TATATACATAAATCATTAAA+TGG | - | chr5.4:43149948-43149967 | MS.gene59666:CDS | 10.0% |
| !! | TATGTATTGTAAATTTAATT+AGG | - | chr5.4:43150685-43150704 | MS.gene59666:intron | 10.0% |
| !!! | TTTTATATAAACAAACTTTT+AGG | - | chr5.4:43150374-43150393 | MS.gene59666:intron | 10.0% |
| !! | ATATTACTAACGTAAAAATT+GGG | + | chr5.4:43152023-43152042 | None:intergenic | 15.0% |
| !! | TATATTACTAACGTAAAAAT+TGG | + | chr5.4:43152024-43152043 | None:intergenic | 15.0% |
| !! | TGTATAATTAGAAATACATT+TGG | - | chr5.4:43150134-43150153 | MS.gene59666:CDS | 15.0% |
| !!! | TAAACTCCTTAATTTTATTT+GGG | + | chr5.4:43151871-43151890 | None:intergenic | 15.0% |
| !!! | TATAATCAATCATACAATTT+TGG | - | chr5.4:43152042-43152061 | MS.gene59666:CDS | 15.0% |
| !!! | TTAATTAGGTAAATATTTTC+TGG | - | chr5.4:43150699-43150718 | MS.gene59666:intron | 15.0% |
| !!! | TTAGTAAAAGAATTTTCTAT+TGG | - | chr5.4:43151268-43151287 | MS.gene59666:intron | 15.0% |
| !! | AAAAATTAATTACTTACCGT+GGG | + | chr5.4:43150619-43150638 | None:intergenic | 20.0% |
| !! | TAAAAATTAATTACTTACCG+TGG | + | chr5.4:43150620-43150639 | None:intergenic | 20.0% |
| !!! | AAAGGATTCAATGAATTTTA+GGG | + | chr5.4:43151371-43151390 | None:intergenic | 20.0% |
| !!! | AAATTTTCACAAGATTTTGA+AGG | - | chr5.4:43150181-43150200 | MS.gene59666:CDS | 20.0% |
| !!! | ATTTATCACAATGACTTTTA+AGG | + | chr5.4:43151427-43151446 | None:intergenic | 20.0% |
| !!! | CTAAACTCCTTAATTTTATT+TGG | + | chr5.4:43151872-43151891 | None:intergenic | 20.0% |
| !!! | CTAAAGACAATTTTCTTTAA+AGG | + | chr5.4:43152493-43152512 | None:intergenic | 20.0% |
| !!! | TAATCATGATGGATAAATAT+TGG | + | chr5.4:43151999-43152018 | None:intergenic | 20.0% |
| !!! | TTTACTATTTCTATCATTCA+CGG | - | chr5.4:43151325-43151344 | MS.gene59666:intron | 20.0% |
| !!! | TTTTTGTTACAATCAAGTTT+GGG | + | chr5.4:43151661-43151680 | None:intergenic | 20.0% |
| !!! | TTTTTTGTTACAATCAAGTT+TGG | + | chr5.4:43151662-43151681 | None:intergenic | 20.0% |
| ! | AAAAATTGGGTTAATCATGA+TGG | + | chr5.4:43152010-43152029 | None:intergenic | 25.0% |
| ! | AAAATTAATTACTTACCGTG+GGG | + | chr5.4:43150618-43150637 | None:intergenic | 25.0% |
| ! | AACCTATATTCAAAGGAAAA+AGG | + | chr5.4:43152150-43152169 | None:intergenic | 25.0% |
| ! | ATATTGGAACCTATATTCAA+AGG | + | chr5.4:43152157-43152176 | None:intergenic | 25.0% |
| ! | CGTAGTATTAGTGAAATTTA+GGG | - | chr5.4:43151745-43151764 | MS.gene59666:CDS | 25.0% |
| ! | GAATGTGAAACAACTTATAA+GGG | - | chr5.4:43152639-43152658 | MS.gene59666:CDS | 25.0% |
| ! | GTAAACAAATAAATTGCGTT+TGG | + | chr5.4:43151310-43151329 | None:intergenic | 25.0% |
| ! | GTAATTGTGTTAACCTTTAA+GGG | - | chr5.4:43151830-43151849 | MS.gene59666:intron | 25.0% |
| ! | TAATTAGAAATACATTTGGC+CGG | - | chr5.4:43150138-43150157 | MS.gene59666:CDS | 25.0% |
| ! | TACAAGTCTTGCAAAAAATA+TGG | + | chr5.4:43152567-43152586 | None:intergenic | 25.0% |
| ! | TATAAGAGAAAAAACACCTT+TGG | - | chr5.4:43150037-43150056 | MS.gene59666:CDS | 25.0% |
| ! | TCATTATTGTCTTCATGAAT+AGG | + | chr5.4:43151062-43151081 | None:intergenic | 25.0% |
| ! | TGTAATTGTGTTAACCTTTA+AGG | - | chr5.4:43151829-43151848 | MS.gene59666:intron | 25.0% |
| !! | AAGATTTTATCCTTACTTCA+AGG | - | chr5.4:43150277-43150296 | MS.gene59666:CDS | 25.0% |
| !! | AAGGATTCAATGAATTTTAG+GGG | + | chr5.4:43151370-43151389 | None:intergenic | 25.0% |
| !! | AAGGATTTCAAAGGATTTTA+TGG | + | chr5.4:43151408-43151427 | None:intergenic | 25.0% |
| !! | AGGATTTCAAAGGATTTTAT+GGG | + | chr5.4:43151407-43151426 | None:intergenic | 25.0% |
| !! | ATAACTCCTTTTCATTTTCA+AGG | + | chr5.4:43150815-43150834 | None:intergenic | 25.0% |
| !! | ATTAGGTAAATATTTTCTGG+TGG | - | chr5.4:43150702-43150721 | MS.gene59666:intron | 25.0% |
| !! | CAAAGGATTCAATGAATTTT+AGG | + | chr5.4:43151372-43151391 | None:intergenic | 25.0% |
| !! | CAGTTTTTGAATATGATATG+TGG | - | chr5.4:43149870-43149889 | MS.gene59666:CDS | 25.0% |
| !! | TTATACAATATCGAGCATTT+TGG | + | chr5.4:43150121-43150140 | None:intergenic | 25.0% |
| !! | TTCCTTTTTCCTTTGAATAT+AGG | - | chr5.4:43152145-43152164 | MS.gene59666:intron | 25.0% |
| !!! | ATGACTTTTAAGGATTTCAA+AGG | + | chr5.4:43151417-43151436 | None:intergenic | 25.0% |
| !!! | ATGGGATTTTAATACTTCAA+AGG | + | chr5.4:43151389-43151408 | None:intergenic | 25.0% |
| !!! | GAGATTTTAAAAGACTTTGT+GGG | + | chr5.4:43151521-43151540 | None:intergenic | 25.0% |
| !!! | TCCTTAATTTTATTTGGGAA+GGG | + | chr5.4:43151866-43151885 | None:intergenic | 25.0% |
| !!! | TCTAGAATTTTTTTTAGCCT+CGG | + | chr5.4:43152413-43152432 | None:intergenic | 25.0% |
| !!! | TGAGATTTTAAAAGACTTTG+TGG | + | chr5.4:43151522-43151541 | None:intergenic | 25.0% |
| !!! | TGTTTGAAAAGTACTCATAT+TGG | + | chr5.4:43152173-43152192 | None:intergenic | 25.0% |
| AATCTATGGAGGACTAATAT+AGG | - | chr5.4:43151125-43151144 | MS.gene59666:intron | 30.0% | |
| AATGTGGTTGAGAGAATATT+TGG | - | chr5.4:43150861-43150880 | MS.gene59666:intron | 30.0% | |
| ATAAATCTTGTATCCACCAA+AGG | + | chr5.4:43150056-43150075 | None:intergenic | 30.0% | |
| ATAGGTAACATTGAAGATGA+AGG | + | chr5.4:43151044-43151063 | None:intergenic | 30.0% | |
| ATGTTCAACTGGAAATTCAT+CGG | + | chr5.4:43151006-43151025 | None:intergenic | 30.0% | |
| ATTTAGCAACTTGGAATCAT+GGG | + | chr5.4:43150562-43150581 | None:intergenic | 30.0% | |
| CACATCAAAAAGATCATCTA+TGG | + | chr5.4:43152452-43152471 | None:intergenic | 30.0% | |
| CGAATGTGAAACAACTTATA+AGG | - | chr5.4:43152638-43152657 | MS.gene59666:CDS | 30.0% | |
| GCGTAGTATTAGTGAAATTT+AGG | - | chr5.4:43151744-43151763 | MS.gene59666:CDS | 30.0% | |
| GCTTGTGTCTTAAACAAAAA+TGG | + | chr5.4:43150927-43150946 | None:intergenic | 30.0% | |
| GTAATGCCTTGAAAATGAAA+AGG | - | chr5.4:43150806-43150825 | MS.gene59666:intron | 30.0% | |
| TAGTTCATTTGTGTGTAAAG+TGG | - | chr5.4:43151720-43151739 | MS.gene59666:CDS | 30.0% | |
| TCAAAGGAAAAAGGAAAAGA+GGG | + | chr5.4:43152141-43152160 | None:intergenic | 30.0% | |
| TCCCTTCCCAAATAAAATTA+AGG | - | chr5.4:43151862-43151881 | MS.gene59666:intron | 30.0% | |
| TGTCATTAATCGAATATCTG+CGG | - | chr5.4:43152243-43152262 | MS.gene59666:CDS | 30.0% | |
| TGTGTCTTAAACAAAAATGG+AGG | + | chr5.4:43150924-43150943 | None:intergenic | 30.0% | |
| TTCAAAGGAAAAAGGAAAAG+AGG | + | chr5.4:43152142-43152161 | None:intergenic | 30.0% | |
| TTTAGTTGTCCTATATGCAT+GGG | - | chr5.4:43152508-43152527 | MS.gene59666:CDS | 30.0% | |
| ! | CATAGATGATCTTTTTGATG+TGG | - | chr5.4:43152450-43152469 | MS.gene59666:CDS | 30.0% |
| ! | TATCATCTACAAGATTTTGC+AGG | - | chr5.4:43150778-43150797 | MS.gene59666:intron | 30.0% |
| ! | TTATGCACTCAGGATTTTAA+TGG | + | chr5.4:43151450-43151469 | None:intergenic | 30.0% |
| !! | CATGATGGATAAATATTGGA+GGG | + | chr5.4:43151995-43152014 | None:intergenic | 30.0% |
| !! | CTCCTTAATTTTATTTGGGA+AGG | + | chr5.4:43151867-43151886 | None:intergenic | 30.0% |
| !! | TCATGATGGATAAATATTGG+AGG | + | chr5.4:43151996-43152015 | None:intergenic | 30.0% |
| !! | TGCTAAATGATGCTTTGAAA+AGG | - | chr5.4:43150574-43150593 | MS.gene59666:intron | 30.0% |
| !!! | AAATATTTTCTGGTGGATTG+CGG | - | chr5.4:43150709-43150728 | MS.gene59666:intron | 30.0% |
| !!! | ACAAACTTTTAGGATTGCAT+TGG | - | chr5.4:43150384-43150403 | MS.gene59666:intron | 30.0% |
| AACGACAAGATGCTAATCTA+TGG | - | chr5.4:43151111-43151130 | MS.gene59666:intron | 35.0% | |
| AAGAGAAAAAACACCTTTGG+TGG | - | chr5.4:43150040-43150059 | MS.gene59666:CDS | 35.0% | |
| AAGTGTGCCTGCAAAAATAA+GGG | - | chr5.4:43150247-43150266 | MS.gene59666:CDS | 35.0% | |
| AATCAACTCCTTACCAACTT+AGG | + | chr5.4:43151596-43151615 | None:intergenic | 35.0% | |
| AATTCATGCTTTAATGCACG+TGG | - | chr5.4:43149842-43149861 | MS.gene59666:CDS | 35.0% | |
| ACACACAAATGAACTAAGCT+AGG | + | chr5.4:43151716-43151735 | None:intergenic | 35.0% | |
| ACGTTATTGAAATTTCCGCA+AGG | - | chr5.4:43152380-43152399 | MS.gene59666:CDS | 35.0% | |
| AGCTGCTTGTAATTTCGATT+TGG | - | chr5.4:43150500-43150519 | MS.gene59666:intron | 35.0% | |
| ATCAACTCCTTACCAACTTA+GGG | + | chr5.4:43151595-43151614 | None:intergenic | 35.0% | |
| ATGGAGGACTAATATAGGTT+CGG | - | chr5.4:43151130-43151149 | MS.gene59666:intron | 35.0% | |
| CATAACTTTCGAAAGACATC+AGG | + | chr5.4:43150011-43150030 | None:intergenic | 35.0% | |
| CATTTAGCAACTTGGAATCA+TGG | + | chr5.4:43150563-43150582 | None:intergenic | 35.0% | |
| CGTTATTGAAATTTCCGCAA+GGG | - | chr5.4:43152381-43152400 | MS.gene59666:CDS | 35.0% | |
| CTAATACCAGAATTTACGTG+CGG | - | chr5.4:43152200-43152219 | MS.gene59666:intron | 35.0% | |
| CTAATATAGGTTCGGATATG+TGG | - | chr5.4:43151138-43151157 | MS.gene59666:intron | 35.0% | |
| CTTTAGTTGTCCTATATGCA+TGG | - | chr5.4:43152507-43152526 | MS.gene59666:CDS | 35.0% | |
| GGATAAATATTGGAGGGTAA+CGG | + | chr5.4:43151989-43152008 | None:intergenic | 35.0% | |
| GTAAAAGACTTTATGCACTC+AGG | + | chr5.4:43151460-43151479 | None:intergenic | 35.0% | |
| TAATACCAGAATTTACGTGC+GGG | - | chr5.4:43152201-43152220 | MS.gene59666:intron | 35.0% | |
| TCGTCATTTCTTCAACGAAA+GGG | + | chr5.4:43152534-43152553 | None:intergenic | 35.0% | |
| TGATCACATACCTTGAAGTA+AGG | + | chr5.4:43150290-43150309 | None:intergenic | 35.0% | |
| TGATCCTTATAAGTAACCCA+TGG | - | chr5.4:43151951-43151970 | MS.gene59666:CDS | 35.0% | |
| ! | ATTCTAGAAGAAATCGCTTG+AGG | - | chr5.4:43152425-43152444 | MS.gene59666:CDS | 35.0% |
| ! | ATTGTGTTAACCTTTAAGGG+AGG | - | chr5.4:43151833-43151852 | MS.gene59666:intron | 35.0% |
| ! | CAAAGCATCATTTAGCAACT+TGG | + | chr5.4:43150571-43150590 | None:intergenic | 35.0% |
| ! | TAAGCCATGGGTTACTTATA+AGG | + | chr5.4:43151958-43151977 | None:intergenic | 35.0% |
| !! | GATGCTTTGAAAAGGAAGAA+TGG | - | chr5.4:43150582-43150601 | MS.gene59666:intron | 35.0% |
| !!! | TTCGTCTTTTTTCTGCAGAT+AGG | + | chr5.4:43152622-43152641 | None:intergenic | 35.0% |
| AGTTCATGTACGTTCTTAGC+GGG | - | chr5.4:43150523-43150542 | MS.gene59666:intron | 40.0% | |
| CAAGTGTGCCTGCAAAAATA+AGG | - | chr5.4:43150246-43150265 | MS.gene59666:CDS | 40.0% | |
| CGACGACGAATTACAAGTAA+AGG | - | chr5.4:43149918-43149937 | MS.gene59666:CDS | 40.0% | |
| CTCGATGTGGAGCTAAAAAT+TGG | + | chr5.4:43150750-43150769 | None:intergenic | 40.0% | |
| GACAAGATGCTAATCTATGG+AGG | - | chr5.4:43151114-43151133 | MS.gene59666:intron | 40.0% | |
| GACTCGTTAGAATGTTCAAC+TGG | + | chr5.4:43151017-43151036 | None:intergenic | 40.0% | |
| GAGTTCATGTACGTTCTTAG+CGG | - | chr5.4:43150522-43150541 | MS.gene59666:intron | 40.0% | |
| GATTGCATTGGAGCTATTGA+TGG | - | chr5.4:43150396-43150415 | MS.gene59666:intron | 40.0% | |
| GTAATTCGTCGTCGAGTTAA+TGG | + | chr5.4:43149912-43149931 | None:intergenic | 40.0% | |
| GTCGTCATCATCATCATCAA+TGG | + | chr5.4:43152362-43152381 | None:intergenic | 40.0% | |
| GTCGTCATTTCTTCAACGAA+AGG | + | chr5.4:43152535-43152554 | None:intergenic | 40.0% | |
| TCAACTCCTTACCAACTTAG+GGG | + | chr5.4:43151594-43151613 | None:intergenic | 40.0% | |
| TCGTTGAAGAAATGACGACA+AGG | - | chr5.4:43152536-43152555 | MS.gene59666:CDS | 40.0% | |
| TGGTACACATATTCCTGCAT+TGG | - | chr5.4:43150416-43150435 | MS.gene59666:intron | 40.0% | |
| TTAGGGGGATGTATTGGATT+AGG | + | chr5.4:43151578-43151597 | None:intergenic | 40.0% | |
| TTGTATCGAGACTGCTATCA+TGG | - | chr5.4:43152582-43152601 | MS.gene59666:CDS | 40.0% | |
| ! | CATATTCCTGCATTGGTAAG+AGG | - | chr5.4:43150423-43150442 | MS.gene59666:intron | 40.0% |
| ! | CTACAAGATTTTGCAGGTCA+CGG | - | chr5.4:43150784-43150803 | MS.gene59666:intron | 40.0% |
| ! | CTCAATAGCACCTGATTTGA+TGG | - | chr5.4:43150211-43150230 | MS.gene59666:CDS | 40.0% |
| ! | GTTGGTTTAGCCATCAAATC+AGG | + | chr5.4:43150224-43150243 | None:intergenic | 40.0% |
| ! | TATGTGGAGAGATGCTACTT+AGG | - | chr5.4:43151154-43151173 | MS.gene59666:intron | 40.0% |
| !! | GGATGAAAGTGTTGTCATAG+TGG | + | chr5.4:43152120-43152139 | None:intergenic | 40.0% |
| !! | TATTTTTGCAGGCACACTTG+AGG | + | chr5.4:43150246-43150265 | None:intergenic | 40.0% |
| !!! | CAATTTTTAGCTCCACATCG+AGG | - | chr5.4:43150748-43150767 | MS.gene59666:intron | 40.0% |
| !!! | GTGCTTTCCCTTATTTTTGC+AGG | + | chr5.4:43150257-43150276 | None:intergenic | 40.0% |
| AACGGAACTGGATTAAGCCA+TGG | + | chr5.4:43151971-43151990 | None:intergenic | 45.0% | |
| ACATGCACTCTTTCCTTTGG+AGG | - | chr5.4:43152336-43152355 | MS.gene59666:CDS | 45.0% | |
| ACCAACTTAGGGGGATGTAT+TGG | + | chr5.4:43151584-43151603 | None:intergenic | 45.0% | |
| ACGGAACTGGATTAAGCCAT+GGG | + | chr5.4:43151970-43151989 | None:intergenic | 45.0% | |
| AGCAGTTATCGTGATCGTCA+TGG | - | chr5.4:43150456-43150475 | MS.gene59666:intron | 45.0% | |
| ATCTTCGCCATGCGTCTTTA+AGG | - | chr5.4:43150838-43150857 | MS.gene59666:intron | 45.0% | |
| CAACTCCTTACCAACTTAGG+GGG | + | chr5.4:43151593-43151612 | None:intergenic | 45.0% | |
| CACTTGCAGCAAATTGTGAC+CGG | + | chr5.4:43150160-43150179 | None:intergenic | 45.0% | |
| CCACATTCCTTAAAGACGCA+TGG | + | chr5.4:43150848-43150867 | None:intergenic | 45.0% | |
| GAAGAAATGACGACAAGGTG+TGG | - | chr5.4:43152541-43152560 | MS.gene59666:CDS | 45.0% | |
| GACACAAGCAGAACTTGTGT+TGG | - | chr5.4:43150938-43150957 | MS.gene59666:intron | 45.0% | |
| GACACATGCACTCTTTCCTT+TGG | - | chr5.4:43152333-43152352 | MS.gene59666:CDS | 45.0% | |
| GCGTCGTTCTTACAGATTGT+CGG | - | chr5.4:43150095-43150114 | MS.gene59666:CDS | 45.0% | |
| GTTATCGTGATCGTCATGGA+AGG | - | chr5.4:43150460-43150479 | MS.gene59666:intron | 45.0% | |
| TCATCATCAATGGCCTCCAA+AGG | + | chr5.4:43152352-43152371 | None:intergenic | 45.0% | |
| TCCAATACATCCCCCTAAGT+TGG | - | chr5.4:43151580-43151599 | MS.gene59666:intron | 45.0% | |
| ! | CCATGCGTCTTTAAGGAATG+TGG | - | chr5.4:43150845-43150864 | MS.gene59666:intron | 45.0% |
| !! | AATGGACTAAAAGTGCCCCA+CGG | - | chr5.4:43150600-43150619 | MS.gene59666:intron | 45.0% |
| !! | ATATTGGAGGGTAACGGAAC+TGG | + | chr5.4:43151983-43152002 | None:intergenic | 45.0% |
| !! | TACATCCCCCTAAGTTGGTA+AGG | - | chr5.4:43151585-43151604 | MS.gene59666:intron | 45.0% |
| ACCTTCAATTCGGGCTCAGT+TGG | - | chr5.4:43152297-43152316 | MS.gene59666:CDS | 50.0% | |
| ACGAAAGGGCCCATGCATAT+AGG | + | chr5.4:43152520-43152539 | None:intergenic | 50.0% | |
| AGCAGGAGGGACCTTCAATT+CGG | - | chr5.4:43152287-43152306 | MS.gene59666:CDS | 50.0% | |
| CCTTCAATTCGGGCTCAGTT+GGG | - | chr5.4:43152298-43152317 | MS.gene59666:CDS | 50.0% | |
| CTTCAATTCGGGCTCAGTTG+GGG | - | chr5.4:43152299-43152318 | MS.gene59666:CDS | 50.0% | |
| GGGACACTTACCTCCCTTAA+AGG | + | chr5.4:43151846-43151865 | None:intergenic | 50.0% | |
| TCATGTACGTTCTTAGCGGG+TGG | - | chr5.4:43150526-43150545 | MS.gene59666:intron | 50.0% | |
| TCTCGTCCTCTTACCAATGC+AGG | + | chr5.4:43150432-43150451 | None:intergenic | 50.0% | |
| TGATATCGCACACCTCGATG+TGG | + | chr5.4:43150763-43150782 | None:intergenic | 50.0% | |
| TTTGCAGGCACACTTGAGGT+TGG | + | chr5.4:43150242-43150261 | None:intergenic | 50.0% | |
| ! | CATGTACGTTCTTAGCGGGT+GGG | - | chr5.4:43150527-43150546 | MS.gene59666:intron | 50.0% |
| ! | GAAAGAGTGCATGTGTCCGA+AGG | + | chr5.4:43152330-43152349 | None:intergenic | 50.0% |
| AACCCTTCTGGTGAGCAGGA+GGG | - | chr5.4:43152274-43152293 | MS.gene59666:CDS | 55.0% | |
| CAGAATTTACGTGCGGGCGA+GGG | - | chr5.4:43152207-43152226 | MS.gene59666:intron | 55.0% | |
| CCCAACTGAGCCCGAATTGA+AGG | + | chr5.4:43152301-43152320 | None:intergenic | 55.0% | |
| CGAGACTGCTATCATGGCTC+AGG | - | chr5.4:43152588-43152607 | MS.gene59666:CDS | 55.0% | |
| CTCAGTTGGGGCATGACCTT+CGG | - | chr5.4:43152311-43152330 | MS.gene59666:CDS | 55.0% | |
| GCAGGAGGGACCTTCAATTC+GGG | - | chr5.4:43152288-43152307 | MS.gene59666:CDS | 55.0% | |
| GGGCATGTCTCAACTCTCAG+AGG | + | chr5.4:43151641-43151660 | None:intergenic | 55.0% | |
| TGAGAACCCTTCTGGTGAGC+AGG | - | chr5.4:43152270-43152289 | MS.gene59666:CDS | 55.0% | |
| ! | TACGTTCTTAGCGGGTGGGA+GGG | - | chr5.4:43150531-43150550 | MS.gene59666:intron | 55.0% |
| AGCCTCGGCAAAAGCCCTTG+CGG | + | chr5.4:43152398-43152417 | None:intergenic | 60.0% | |
| CCAGAATTTACGTGCGGGCG+AGG | - | chr5.4:43152206-43152225 | MS.gene59666:intron | 60.0% | |
| CCTCGCCCGCACGTAAATTC+TGG | + | chr5.4:43152209-43152228 | None:intergenic | 60.0% | |
| GAACCCTTCTGGTGAGCAGG+AGG | - | chr5.4:43152273-43152292 | MS.gene59666:CDS | 60.0% | |
| GCGGCTGATGAGAACCCTTC+TGG | - | chr5.4:43152262-43152281 | MS.gene59666:CDS | 60.0% | |
| GTCCCTCCTGCTCACCAGAA+GGG | + | chr5.4:43152279-43152298 | None:intergenic | 60.0% | |
| ! | GTACGTTCTTAGCGGGTGGG+AGG | - | chr5.4:43150530-43150549 | MS.gene59666:intron | 60.0% |
| ! | TTCCGCAAGGGCTTTTGCCG+AGG | - | chr5.4:43152393-43152412 | MS.gene59666:CDS | 60.0% |
| CGTGCGGGCGAGGGCAATTT+CGG | - | chr5.4:43152216-43152235 | MS.gene59666:intron | 65.0% | |
| GGTCCCTCCTGCTCACCAGA+AGG | + | chr5.4:43152280-43152299 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5.4 | gene | 43149837 | 43152684 | 43149837 | ID=MS.gene59666 |
| chr5.4 | mRNA | 43149837 | 43152684 | 43149837 | ID=MS.gene59666.t1;Parent=MS.gene59666 |
| chr5.4 | exon | 43152223 | 43152684 | 43152223 | ID=MS.gene59666.t1.exon1;Parent=MS.gene59666.t1 |
| chr5.4 | CDS | 43152223 | 43152684 | 43152223 | ID=cds.MS.gene59666.t1;Parent=MS.gene59666.t1 |
| chr5.4 | exon | 43151900 | 43152125 | 43151900 | ID=MS.gene59666.t1.exon2;Parent=MS.gene59666.t1 |
| chr5.4 | CDS | 43151900 | 43152125 | 43151900 | ID=cds.MS.gene59666.t1;Parent=MS.gene59666.t1 |
| chr5.4 | exon | 43151716 | 43151814 | 43151716 | ID=MS.gene59666.t1.exon3;Parent=MS.gene59666.t1 |
| chr5.4 | CDS | 43151716 | 43151814 | 43151716 | ID=cds.MS.gene59666.t1;Parent=MS.gene59666.t1 |
| chr5.4 | exon | 43151375 | 43151551 | 43151375 | ID=MS.gene59666.t1.exon4;Parent=MS.gene59666.t1 |
| chr5.4 | CDS | 43151375 | 43151551 | 43151375 | ID=cds.MS.gene59666.t1;Parent=MS.gene59666.t1 |
| chr5.4 | exon | 43149837 | 43150354 | 43149837 | ID=MS.gene59666.t1.exon5;Parent=MS.gene59666.t1 |
| chr5.4 | CDS | 43149837 | 43150354 | 43149837 | ID=cds.MS.gene59666.t1;Parent=MS.gene59666.t1 |
| Gene Sequence |
| Protein sequence |
