AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59693

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59693.t1 MTR_5g055100 88.608 237 27 0 1 237 1 237 4.83e-159 440
MS.gene59693.t1 MTR_2g085280 80.932 236 45 0 1 236 1 236 1.13e-142 399
MS.gene59693.t1 MTR_2g085250 80.932 236 45 0 1 236 1 236 4.30e-142 397
MS.gene59693.t1 MTR_5g045560 77.637 237 53 0 1 237 1 237 4.42e-127 359
MS.gene59693.t1 MTR_5g053390 75.556 225 55 0 1 225 1 225 2.56e-123 350
MS.gene59693.t1 MTR_1g075600 70.222 225 67 0 1 225 1 225 1.54e-113 325
MS.gene59693.t1 MTR_1g077360 70.222 225 67 0 1 225 1 225 2.49e-113 324
MS.gene59693.t1 MTR_8g043650 64.557 237 84 0 1 237 1 237 1.36e-112 322
MS.gene59693.t1 MTR_1g105920 67.873 221 71 0 1 221 1 221 2.11e-109 314
MS.gene59693.t1 MTR_1g012570 66.245 237 80 0 1 237 1 237 5.21e-106 306
MS.gene59693.t1 MTR_1g105910 63.291 237 87 0 1 237 1 237 3.86e-105 303
MS.gene59693.t1 MTR_2g030740 64.979 237 83 0 1 237 1 237 8.67e-105 303
MS.gene59693.t1 MTR_3g052920 64.384 219 78 0 1 219 1 219 4.37e-102 296
MS.gene59693.t1 MTR_1g105905 62.273 220 83 0 18 237 1 220 3.11e-99 288
MS.gene59693.t1 MTR_0121s0080 58.228 237 98 1 1 237 1 236 6.95e-97 283
MS.gene59693.t1 MTR_3g030770 61.277 235 73 3 1 225 1 227 2.27e-96 281
MS.gene59693.t1 MTR_1g108510 60.851 235 74 3 1 225 1 227 2.79e-94 276
MS.gene59693.t1 MTR_2g093190 60.000 235 76 3 1 225 1 227 2.50e-91 268
MS.gene59693.t1 MTR_3g052870 60.274 219 68 2 1 219 1 200 9.53e-88 259
MS.gene59693.t1 MTR_1g108580 55.649 239 89 3 1 237 1 224 6.42e-87 257
MS.gene59693.t1 MTR_7g062350 52.542 236 110 2 3 237 14 248 5.62e-82 245
MS.gene59693.t1 MTR_1g106070 63.187 182 67 0 1 182 1 182 1.59e-81 242
MS.gene59693.t1 MTR_1g075570 61.236 178 55 1 18 195 1 164 2.80e-63 195
MS.gene59693.t1 MTR_3g080940 45.178 197 104 1 1 193 1 197 9.51e-52 167
MS.gene59693.t1 MTR_0121s0100 62.500 128 48 0 1 128 1 128 3.81e-49 158
MS.gene59693.t1 MTR_3g067910 73.529 102 27 0 21 122 2 103 1.21e-48 155
MS.gene59693.t1 MTR_3g030780 60.976 123 48 0 1 123 1 123 2.34e-48 155
MS.gene59693.t1 MTR_3g067875 87.500 56 7 0 18 73 1 56 1.98e-29 105
MS.gene59693.t1 MTR_8g086290 35.542 166 97 2 5 167 8 166 8.88e-28 104
MS.gene59693.t1 MTR_2g105290 32.184 174 106 2 5 174 8 173 1.99e-27 103
MS.gene59693.t1 MTR_7g028448 38.312 154 83 2 5 158 8 149 2.11e-27 103
MS.gene59693.t1 MTR_4g036915 38.312 154 83 2 5 158 8 149 2.11e-27 103
MS.gene59693.t1 MTR_3g067915 53.846 91 42 0 33 123 3 93 2.22e-25 95.9
MS.gene59693.t1 MTR_3g067870 73.016 63 17 0 16 78 83 145 3.10e-25 97.4
MS.gene59693.t1 MTR_1g047550 50.649 77 38 0 9 85 2 78 2.64e-23 93.2
MS.gene59693.t1 MTR_8g079502 53.521 71 33 0 9 79 2 72 5.28e-23 92.4
MS.gene59693.t1 MTR_4g131030 36.810 163 91 5 9 161 2 162 1.29e-22 92.0
MS.gene59693.t1 MTR_8g051580 51.899 79 38 0 9 87 2 80 1.42e-22 91.3
MS.gene59693.t1 MTR_8g046350 54.545 77 35 0 9 85 2 78 2.21e-22 90.1
MS.gene59693.t1 MTR_1g108500 57.317 82 14 1 22 103 110 170 6.96e-22 92.4
MS.gene59693.t1 MTR_1g054265 46.835 79 42 0 9 87 2 80 3.56e-21 87.0
MS.gene59693.t1 MTR_1g063160 39.048 105 62 1 9 111 2 106 1.33e-20 85.9
MS.gene59693.t1 MTR_4g127140 34.831 178 108 3 5 175 8 184 1.22e-19 83.6
MS.gene59693.t1 MTR_4g093970 45.000 100 46 2 10 101 29 127 2.05e-18 81.6
MS.gene59693.t1 MTR_4g094632 52.174 69 33 0 9 77 2 70 3.98e-18 79.0
MS.gene59693.t1 MTR_3g005530 50.000 68 34 0 9 76 2 69 8.91e-18 79.3
MS.gene59693.t1 MTR_4g094638 50.725 69 34 0 9 77 2 70 3.75e-17 76.6
MS.gene59693.t1 MTR_3g452380 43.750 80 45 0 3 82 11 90 3.78e-17 78.2
MS.gene59693.t1 MTR_4g102530 48.611 72 37 0 10 81 3 74 1.10e-16 76.3
MS.gene59693.t1 MTR_8g033270 49.367 79 38 1 9 85 2 80 1.33e-16 76.6
MS.gene59693.t1 MTR_4g109830 50.725 69 33 1 9 76 2 70 2.12e-16 75.9
MS.gene59693.t1 MTR_1g053070 52.941 68 32 0 9 76 2 69 4.59e-16 75.1
MS.gene59693.t1 MTR_8g087860 48.529 68 35 0 9 76 18 85 6.03e-16 74.7
MS.gene59693.t1 MTR_5g066180 48.529 68 35 0 9 76 2 69 6.36e-16 74.3
MS.gene59693.t1 MTR_7g075870 46.914 81 39 1 10 86 3 83 7.24e-16 73.9
MS.gene59693.t1 MTR_6g464720 50.725 69 33 1 9 76 2 70 1.03e-15 74.3
MS.gene59693.t1 MTR_2g017865 48.529 68 35 0 9 76 17 84 1.32e-15 74.3
MS.gene59693.t1 MTR_1g101970 51.471 68 33 0 9 76 2 69 1.56e-15 72.8
MS.gene59693.t1 MTR_0003s0590 51.471 68 33 0 9 76 2 69 2.24e-15 73.6
MS.gene59693.t1 MTR_8g033220 45.333 75 41 0 10 84 3 77 2.57e-15 72.8
MS.gene59693.t1 MTR_8g033220 45.333 75 41 0 10 84 3 77 2.62e-15 72.8
MS.gene59693.t1 MTR_5g032150 50.746 67 33 0 9 75 2 68 2.96e-15 72.8
MS.gene59693.t1 MTR_5g032520 50.746 67 33 0 9 75 2 68 3.30e-15 72.4
MS.gene59693.t1 MTR_4g084740 46.835 79 40 2 9 86 2 79 4.64e-15 73.6
MS.gene59693.t1 MTR_2g009890 42.105 76 44 0 9 84 2 77 5.63e-15 72.8
MS.gene59693.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 8.45e-15 71.6
MS.gene59693.t1 MTR_5g046790 48.529 68 34 1 9 75 2 69 1.05e-14 70.9
MS.gene59693.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 1.05e-14 71.2
MS.gene59693.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 1.06e-14 71.6
MS.gene59693.t1 MTR_5g031000 44.118 68 38 0 9 76 2 69 1.10e-14 71.2
MS.gene59693.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 1.23e-14 71.2
MS.gene59693.t1 MTR_2g461710 53.571 56 26 0 9 64 2 57 1.29e-14 66.6
MS.gene59693.t1 MTR_7g075870 46.341 82 39 2 10 86 3 84 1.67e-14 70.5
MS.gene59693.t1 MTR_7g016630 44.444 72 39 1 9 79 2 73 1.82e-14 70.9
MS.gene59693.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 1.89e-14 70.5
MS.gene59693.t1 MTR_5g021270 50.000 70 33 1 9 76 2 71 1.96e-14 70.5
MS.gene59693.t1 MTR_3g102570 47.887 71 36 1 9 78 2 72 3.12e-14 70.9
MS.gene59693.t1 MTR_7g075850 45.122 82 42 2 9 87 2 83 3.98e-14 70.1
MS.gene59693.t1 MTR_1g029670 48.485 66 33 1 9 74 2 66 4.37e-14 68.6
MS.gene59693.t1 MTR_4g109810 26.721 247 134 6 9 230 2 226 5.47e-14 69.3
MS.gene59693.t1 MTR_3g437790 31.469 143 79 5 26 158 30 163 6.04e-14 68.2
MS.gene59693.t1 MTR_1g038300 45.238 84 40 2 9 86 2 85 6.46e-14 68.9
MS.gene59693.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 7.37e-14 64.7
MS.gene59693.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 8.29e-14 67.8
MS.gene59693.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 9.75e-14 65.9
MS.gene59693.t1 MTR_8g022970 30.409 171 92 5 2 158 9 166 1.05e-13 67.8
MS.gene59693.t1 MTR_3g113030 47.619 63 33 0 9 71 2 64 2.15e-13 67.8
MS.gene59693.t1 MTR_8g097090 55.357 56 25 0 9 64 2 57 3.46e-13 67.4
MS.gene59693.t1 MTR_3g084980 53.571 56 26 0 9 64 2 57 3.96e-13 67.0
MS.gene59693.t1 MTR_4g093030 35.537 121 60 3 9 114 2 119 1.08e-12 64.3
MS.gene59693.t1 MTR_4g051538 38.202 89 55 0 1 89 1 89 7.96e-12 63.2
MS.gene59693.t1 MTR_3g109930 31.447 159 95 5 27 178 20 171 1.77e-11 61.2
MS.gene59693.t1 MTR_4g108720 42.857 77 42 1 9 83 2 78 5.04e-11 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59693.t1 AT5G60440 50.265 189 87 3 5 190 3 187 6.34e-54 176
MS.gene59693.t1 AT1G65360 41.379 232 121 6 5 230 3 225 5.53e-43 145
MS.gene59693.t1 AT1G01530 41.053 190 104 3 4 192 2 184 3.05e-38 134
MS.gene59693.t1 AT2G24840 47.468 158 78 2 9 163 63 218 8.90e-38 133
MS.gene59693.t1 AT4G36590 37.553 237 123 8 5 226 3 229 1.51e-36 129
MS.gene59693.t1 AT3G04100 27.551 196 138 2 2 193 7 202 1.35e-25 99.8
MS.gene59693.t1 AT2G34440 53.521 71 33 0 9 79 2 72 2.26e-22 90.5
MS.gene59693.t1 AT3G66656 58.824 68 28 0 9 76 2 69 6.13e-22 89.4
MS.gene59693.t1 AT1G72350 34.940 166 70 5 9 169 43 175 2.89e-21 89.0
MS.gene59693.t1 AT4G37940 32.370 173 86 5 9 154 2 170 1.33e-18 81.6
MS.gene59693.t1 AT2G22630 32.787 183 86 6 9 154 2 184 1.34e-18 81.6
MS.gene59693.t1 AT2G22630 32.787 183 86 6 9 154 2 184 1.34e-18 81.6
MS.gene59693.t1 AT1G28460 30.857 175 107 5 5 170 4 173 1.84e-18 80.5
MS.gene59693.t1 AT2G45660 52.941 68 32 0 10 77 3 70 4.48e-18 78.6
MS.gene59693.t1 AT2G45650 54.412 68 31 0 9 76 2 69 4.66e-18 80.9
MS.gene59693.t1 AT5G51870 52.778 72 34 0 5 76 21 92 7.48e-18 79.0
MS.gene59693.t1 AT2G45660 52.941 68 32 0 10 77 3 70 1.20e-17 79.0
MS.gene59693.t1 AT4G37940 31.694 183 88 6 9 154 2 184 1.32e-17 79.3
MS.gene59693.t1 AT4G09960 48.529 68 35 0 9 76 2 69 2.28e-17 78.2
MS.gene59693.t1 AT4G09960 48.529 68 35 0 9 76 3 70 2.67e-17 78.6
MS.gene59693.t1 AT4G09960 48.529 68 35 0 9 76 2 69 2.79e-17 78.2
MS.gene59693.t1 AT4G22950 47.222 72 38 0 10 81 3 74 2.81e-17 77.0
MS.gene59693.t1 AT4G09960 48.529 68 35 0 9 76 12 79 3.32e-17 78.2
MS.gene59693.t1 AT5G51870 53.731 67 31 0 10 76 3 69 4.77e-17 76.3
MS.gene59693.t1 AT4G09960 48.529 68 35 0 9 76 28 95 4.78e-17 78.2
MS.gene59693.t1 AT1G29962 28.144 167 106 4 5 157 4 170 5.71e-17 76.6
MS.gene59693.t1 AT5G51870 53.731 67 31 0 10 76 3 69 6.50e-17 77.0
MS.gene59693.t1 AT4G22950 47.887 71 37 0 10 80 3 73 8.14e-17 76.6
MS.gene59693.t1 AT4G22950 47.887 71 37 0 10 80 3 73 8.14e-17 76.6
MS.gene59693.t1 AT5G51870 52.857 70 33 0 7 76 10 79 8.80e-17 77.0
MS.gene59693.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.15e-16 76.3
MS.gene59693.t1 AT4G09960 48.529 68 35 0 9 76 97 164 1.25e-16 77.8
MS.gene59693.t1 AT5G23260 35.570 149 68 4 5 125 14 162 1.28e-16 77.0
MS.gene59693.t1 AT5G10140 49.275 69 34 1 9 76 2 70 1.40e-16 75.1
MS.gene59693.t1 AT5G10140 45.783 83 41 2 9 90 2 81 2.06e-16 75.1
MS.gene59693.t1 AT5G10140 29.688 192 121 3 9 199 2 180 2.07e-16 75.1
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.09e-16 72.8
MS.gene59693.t1 AT3G57390 52.941 68 32 0 9 76 2 69 2.34e-16 75.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.52e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.52e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 2.52e-16 73.9
MS.gene59693.t1 AT5G10140 49.275 69 34 1 9 76 2 70 2.80e-16 74.7
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.01e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.01e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.01e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.01e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 3.01e-16 73.9
MS.gene59693.t1 AT5G23260 45.652 92 44 2 5 90 14 105 3.02e-16 76.3
MS.gene59693.t1 AT3G57230 45.588 68 37 0 9 76 2 69 3.25e-16 73.6
MS.gene59693.t1 AT4G18960 46.667 75 40 0 2 76 11 85 3.59e-16 75.9
MS.gene59693.t1 AT3G30260 30.137 146 72 4 9 124 2 147 3.97e-16 75.5
MS.gene59693.t1 AT5G23260 35.333 150 69 4 9 130 2 151 4.10e-16 75.5
MS.gene59693.t1 AT2G42830 44.737 76 42 0 1 76 9 84 4.85e-16 75.1
MS.gene59693.t1 AT3G57390 52.941 68 32 0 9 76 2 69 4.99e-16 75.5
MS.gene59693.t1 AT2G42830 44.737 76 42 0 1 76 9 84 5.19e-16 75.1
MS.gene59693.t1 AT3G61120 51.471 68 33 0 9 76 2 69 5.53e-16 75.1
MS.gene59693.t1 AT3G58780 47.887 71 37 0 6 76 14 84 6.49e-16 75.1
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.56e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 6.56e-16 73.9
MS.gene59693.t1 AT2G22540 50.746 67 33 0 9 75 2 68 6.65e-16 74.7
MS.gene59693.t1 AT2G22540 50.746 67 33 0 9 75 2 68 6.65e-16 74.7
MS.gene59693.t1 AT1G22130 39.394 99 59 1 9 106 2 100 6.66e-16 75.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 7.32e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 7.32e-16 73.9
MS.gene59693.t1 AT5G62165 50.746 67 33 0 10 76 3 69 7.32e-16 73.9
MS.gene59693.t1 AT3G58780 47.887 71 37 0 6 76 20 90 8.54e-16 74.7
MS.gene59693.t1 AT3G57230 45.588 68 37 0 9 76 2 69 8.83e-16 74.3
MS.gene59693.t1 AT3G57230 45.588 68 37 0 9 76 2 69 8.83e-16 74.3
MS.gene59693.t1 AT5G23260 46.591 88 41 2 9 90 2 89 1.27e-15 73.9
MS.gene59693.t1 AT4G37940 47.059 68 36 0 9 76 2 69 1.35e-15 72.4
MS.gene59693.t1 AT3G58780 45.333 75 41 0 2 76 10 84 1.41e-15 74.3
MS.gene59693.t1 AT4G24540 51.471 68 33 0 9 76 2 69 1.50e-15 73.6
MS.gene59693.t1 AT5G51860 50.746 67 33 0 10 76 3 69 1.80e-15 72.8
MS.gene59693.t1 AT3G54340 47.143 70 35 1 9 76 2 71 2.27e-15 73.2
MS.gene59693.t1 AT5G51860 50.746 67 33 0 10 76 3 69 2.36e-15 72.8
MS.gene59693.t1 AT5G13790 48.529 68 35 0 9 76 2 69 2.51e-15 73.6
MS.gene59693.t1 AT5G13790 48.529 68 35 0 9 76 2 69 2.81e-15 73.6
MS.gene59693.t1 AT1G77980 40.449 89 52 1 9 96 2 90 3.06e-15 73.9
MS.gene59693.t1 AT5G60910 47.826 69 35 1 9 76 2 70 7.87e-15 72.0
MS.gene59693.t1 AT5G65050 47.826 69 35 1 9 76 2 70 8.47e-15 70.5
MS.gene59693.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.33e-14 71.2
MS.gene59693.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.33e-14 71.2
MS.gene59693.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.33e-14 71.2
MS.gene59693.t1 AT1G77950 43.421 76 41 2 9 83 2 76 1.33e-14 71.2
MS.gene59693.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.45e-14 70.9
MS.gene59693.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.50e-14 69.7
MS.gene59693.t1 AT4G11880 47.222 72 37 1 10 80 3 74 1.50e-14 69.7
MS.gene59693.t1 AT1G26310 44.928 69 37 1 9 76 2 70 1.62e-14 71.2
MS.gene59693.t1 AT2G14210 47.826 69 35 1 9 76 2 70 1.78e-14 70.9
MS.gene59693.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.94e-14 70.9
MS.gene59693.t1 AT1G69120 44.928 69 37 1 9 76 2 70 2.09e-14 70.5
MS.gene59693.t1 AT5G65050 47.826 69 35 1 9 76 2 70 2.15e-14 69.7
MS.gene59693.t1 AT5G65050 47.826 69 35 1 9 76 2 70 2.30e-14 69.7
MS.gene59693.t1 AT4G11880 47.222 72 37 1 10 80 3 74 2.33e-14 70.1
MS.gene59693.t1 AT4G11880 47.222 72 37 1 10 80 3 74 2.33e-14 70.1
MS.gene59693.t1 AT1G28450 28.977 176 111 6 5 168 4 177 2.33e-14 69.3
MS.gene59693.t1 AT5G65050 47.826 69 35 1 9 76 2 70 2.52e-14 69.3
MS.gene59693.t1 AT2G03710 41.000 100 51 3 9 100 2 101 2.55e-14 70.5
MS.gene59693.t1 AT1G17310 51.316 76 35 1 8 83 47 120 2.60e-14 70.1
MS.gene59693.t1 AT2G03710 41.000 100 51 3 9 100 2 101 2.66e-14 69.3
MS.gene59693.t1 AT2G03710 41.000 100 51 3 9 100 2 101 2.81e-14 70.5
MS.gene59693.t1 AT5G15800 49.275 69 34 1 9 76 2 70 3.33e-14 70.5
MS.gene59693.t1 AT1G17310 51.316 76 35 1 8 83 58 131 3.99e-14 69.7
MS.gene59693.t1 AT5G20240 45.714 70 36 1 9 76 2 71 4.08e-14 67.8
MS.gene59693.t1 AT1G69120 44.928 69 37 1 9 76 2 70 4.44e-14 70.1
MS.gene59693.t1 AT5G20240 45.714 70 36 1 9 76 2 71 5.39e-14 68.9
MS.gene59693.t1 AT2G22540 57.143 56 24 0 9 64 2 57 7.42e-14 68.9
MS.gene59693.t1 AT1G47760 31.304 115 69 2 9 115 2 114 1.10e-13 67.8
MS.gene59693.t1 AT3G58780 50.820 61 30 0 6 66 14 74 1.19e-13 68.6
MS.gene59693.t1 AT3G58780 47.692 65 34 0 2 66 10 74 1.70e-13 68.6
MS.gene59693.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.76e-13 67.0
MS.gene59693.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.86e-13 67.4
MS.gene59693.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.86e-13 67.0
MS.gene59693.t1 AT5G65070 40.964 83 45 2 9 90 2 81 2.21e-13 65.9
MS.gene59693.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.26e-13 67.8
MS.gene59693.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.50e-13 67.8
MS.gene59693.t1 AT1G24260 55.357 56 25 0 9 64 2 57 2.53e-13 67.8
MS.gene59693.t1 AT5G65070 30.573 157 78 6 9 138 2 154 3.01e-13 66.6
MS.gene59693.t1 AT1G71692 45.714 70 37 1 9 77 2 71 4.00e-13 66.6
MS.gene59693.t1 AT3G02310 44.928 69 37 1 9 76 2 70 4.69e-13 66.2
MS.gene59693.t1 AT5G65080 41.379 87 47 2 1 86 1 84 6.50e-13 65.5
MS.gene59693.t1 AT5G65070 40.964 83 45 2 9 90 2 81 7.81e-13 66.2
MS.gene59693.t1 AT5G65070 40.964 83 45 2 9 90 2 81 9.15e-13 65.5
MS.gene59693.t1 AT3G02310 44.928 69 37 1 9 76 2 70 9.25e-13 66.2
MS.gene59693.t1 AT5G65070 49.123 57 29 0 9 65 2 58 2.51e-12 64.7
MS.gene59693.t1 AT1G18750 38.961 77 45 1 9 83 2 78 6.43e-12 64.7
MS.gene59693.t1 AT4G37435 43.056 72 40 1 9 79 2 73 6.59e-12 62.8
MS.gene59693.t1 AT1G18750 38.961 77 45 1 9 83 2 78 8.09e-12 64.7
MS.gene59693.t1 AT1G18750 38.961 77 45 1 9 83 2 78 8.55e-12 64.3
MS.gene59693.t1 AT5G49490 39.773 88 46 2 5 85 41 128 2.05e-11 62.8
MS.gene59693.t1 AT5G65080 43.548 62 35 0 1 62 1 62 2.77e-11 61.2
MS.gene59693.t1 AT2G26320 43.243 74 40 1 5 76 14 87 3.04e-11 59.3
MS.gene59693.t1 AT1G46408 43.836 73 37 2 10 78 5 77 6.32e-11 61.2
MS.gene59693.t1 AT5G49420 37.931 87 49 2 5 86 3 89 6.90e-11 61.6

Find 56 sgRNAs with CRISPR-Local

Find 63 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCATGATGTCATCATTT+TGG 0.109779 5.4:+43543732 None:intergenic
GACCTTATTCATCTCATAAA+TGG 0.175011 5.4:+43543562 None:intergenic
GAACCATTTCCAACATAAAA+TGG 0.249437 5.4:+43543440 None:intergenic
TTTGTTTGGTTTCAACAATA+TGG 0.259787 5.4:-43543324 MS.gene59693:CDS
TCTATGATCGTTTCAACATT+TGG 0.289536 5.4:+43543779 None:intergenic
CAACATAAAATGGAAGGGTT+TGG 0.295108 5.4:+43543450 None:intergenic
GTTGAATCTTGTTGAGGATT+TGG 0.322565 5.4:+43543389 None:intergenic
TTGTTGCTCAACATGCTGAT+AGG 0.333786 5.4:-43543496 MS.gene59693:CDS
CCTGATTTGTCTTTCGCACC+TGG 0.338707 5.4:+43543606 None:intergenic
ATTATACAAGAAGGCTTTAG+AGG 0.340263 5.4:-43543531 MS.gene59693:CDS
AACATAAAATGGAAGGGTTT+GGG 0.353082 5.4:+43543451 None:intergenic
TTGTTTGGTTTCAACAATAT+GGG 0.380840 5.4:-43543323 MS.gene59693:CDS
AGCGAGCTTTGCACCCTTTG+TGG 0.386397 5.4:-43543860 MS.gene59693:CDS
GTTGGAAATGGTTCATCCTC+TGG 0.402464 5.4:-43543431 MS.gene59693:CDS
TGCTGATAGGGTTGAAATGC+AGG 0.408645 5.4:-43543483 MS.gene59693:CDS
ATGTTGCAACCACATTTGTT+TGG 0.415267 5.4:-43543338 MS.gene59693:CDS
ACCTTATTCATCTCATAAAT+GGG 0.419947 5.4:+43543563 None:intergenic
TCCCATTTATGAGATGAATA+AGG 0.420859 5.4:-43543564 MS.gene59693:CDS
AACAAATGTGGTTGCAACAT+AGG 0.466580 5.4:+43543341 None:intergenic
CCTTCTTGTATAATTCAAGT+TGG 0.484620 5.4:+43543540 None:intergenic
TGCAATATATGCACCACAAA+GGG 0.491018 5.4:+43543847 None:intergenic
GTGGTTGCAACATAGGGTTA+TGG 0.497158 5.4:+43543348 None:intergenic
TGACATCATGCAATTAATTG+AGG 0.500210 5.4:-43543723 MS.gene59693:CDS
CCAGGTGCGAAAGACAAATC+AGG 0.504787 5.4:-43543606 MS.gene59693:CDS
GCTCGCGCACCTTGGCTCTA+CGG 0.510044 5.4:+43543696 None:intergenic
ACAAATGTGGTTGCAACATA+GGG 0.521813 5.4:+43543342 None:intergenic
TTCAACAATATGGGAGAAGA+AGG 0.528297 5.4:-43543314 MS.gene59693:CDS
GCCAAGGTGCGCGAGCTCAA+TGG 0.535008 5.4:-43543689 MS.gene59693:CDS
ACCATTGAGCTCGCGCACCT+TGG 0.535093 5.4:+43543688 None:intergenic
CCAACTTGAATTATACAAGA+AGG 0.537115 5.4:-43543540 MS.gene59693:CDS
CATTTCCAACATAAAATGGA+AGG 0.542188 5.4:+43543444 None:intergenic
GAGCTCAATGGTATATTGAC+TGG 0.544330 5.4:-43543677 MS.gene59693:CDS
TGTTGCTCAACATGCTGATA+GGG 0.545180 5.4:-43543495 MS.gene59693:CDS
GAAGGTGGACATGGTCCACA+TGG 0.547260 5.4:-43543296 MS.gene59693:CDS
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 5.4:-43543898 MS.gene59693:CDS
CCGTGAGAATGAGCTAATCC+AGG 0.557926 5.4:-43543624 MS.gene59693:CDS
ATTTCCAACATAAAATGGAA+GGG 0.561384 5.4:+43543445 None:intergenic
GGATTTGGCTGATGCTCAAG+AGG 0.571835 5.4:+43543404 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 5.4:-43543899 MS.gene59693:CDS
GCATTAATCATATTCTCACC+TGG 0.573031 5.4:-43543827 MS.gene59693:CDS
ACTGGTATGAAAGATGCAAT+CGG 0.573096 5.4:-43543659 MS.gene59693:CDS
AACAATATGGGAGAAGAAGG+TGG 0.594567 5.4:-43543311 MS.gene59693:CDS
ATGGGAGAAGAAGGTGGACA+TGG 0.604335 5.4:-43543305 MS.gene59693:CDS
ATGCAATATATGCACCACAA+AGG 0.613948 5.4:+43543846 None:intergenic
TGTGCTTTAGCCATGTCAAG+CGG 0.619256 5.4:-43543989 None:intergenic
GGAAAGGTTGAATCTTGTTG+AGG 0.620573 5.4:+43543383 None:intergenic
TCAAGCGGAAAGAAAACTCA+AGG 0.621333 5.4:-43543974 MS.gene59693:CDS
CCTGGATTAGCTCATTCTCA+CGG 0.627343 5.4:+43543624 None:intergenic
CTTTCTTGAAGAGCCCACTA+CGG 0.627906 5.4:+43543885 None:intergenic
AATGAAAATACTTTCTCACC+AGG 0.642771 5.4:+43543809 None:intergenic
TGAGGATTACCGTAGAGCCA+AGG 0.649629 5.4:-43543705 MS.gene59693:CDS
GCTGATAGGGTTGAAATGCA+GGG 0.657468 5.4:-43543482 MS.gene59693:CDS
ATGCTCAAGAGGCATTCCAG+AGG 0.678253 5.4:+43543415 None:intergenic
TTGTTGAAACCAAACAAATG+TGG 0.689946 5.4:+43543329 None:intergenic
AAGGTGGACATGGTCCACAT+GGG 0.699064 5.4:-43543295 MS.gene59693:CDS
TCATATCAAAAGAACCCATG+TGG 0.739919 5.4:+43543281 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ACCTTATTCATCTCATAAAT+GGG + chr5.4:43543703-43543722 None:intergenic 25.0%
! ATTTCCAACATAAAATGGAA+GGG + chr5.4:43543821-43543840 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr5.4:43543940-43543959 MS.gene59693:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr5.4:43543939-43543958 MS.gene59693:CDS 25.0%
AACATAAAATGGAAGGGTTT+GGG + chr5.4:43543815-43543834 None:intergenic 30.0%
AATGAAAATACTTTCTCACC+AGG + chr5.4:43543457-43543476 None:intergenic 30.0%
CATTTCCAACATAAAATGGA+AGG + chr5.4:43543822-43543841 None:intergenic 30.0%
CCAACTTGAATTATACAAGA+AGG - chr5.4:43543723-43543742 MS.gene59693:CDS 30.0%
CCTTCTTGTATAATTCAAGT+TGG + chr5.4:43543726-43543745 None:intergenic 30.0%
GAACCATTTCCAACATAAAA+TGG + chr5.4:43543826-43543845 None:intergenic 30.0%
GACCTTATTCATCTCATAAA+TGG + chr5.4:43543704-43543723 None:intergenic 30.0%
TCCCATTTATGAGATGAATA+AGG - chr5.4:43543699-43543718 MS.gene59693:CDS 30.0%
TCTATGATCGTTTCAACATT+TGG + chr5.4:43543487-43543506 None:intergenic 30.0%
TGACATCATGCAATTAATTG+AGG - chr5.4:43543540-43543559 MS.gene59693:CDS 30.0%
TTGTTGAAACCAAACAAATG+TGG + chr5.4:43543937-43543956 None:intergenic 30.0%
! AGACAAATCAGGAACATTTT+TGG - chr5.4:43543668-43543687 MS.gene59693:CDS 30.0%
! ATTATACAAGAAGGCTTTAG+AGG - chr5.4:43543732-43543751 MS.gene59693:CDS 30.0%
! ATTGCATGATGTCATCATTT+TGG + chr5.4:43543534-43543553 None:intergenic 30.0%
! CTTCCATTTTATGTTGGAAA+TGG - chr5.4:43543820-43543839 MS.gene59693:CDS 30.0%
! TTGCATGATGTCATCATTTT+GGG + chr5.4:43543533-43543552 None:intergenic 30.0%
!!! GGTGAGAAAGTATTTTCATT+TGG - chr5.4:43543457-43543476 MS.gene59693:CDS 30.0%
AACAAATGTGGTTGCAACAT+AGG + chr5.4:43543925-43543944 None:intergenic 35.0%
ACAAATGTGGTTGCAACATA+GGG + chr5.4:43543924-43543943 None:intergenic 35.0%
ACTGGTATGAAAGATGCAAT+CGG - chr5.4:43543604-43543623 MS.gene59693:CDS 35.0%
ATGCAATATATGCACCACAA+AGG + chr5.4:43543420-43543439 None:intergenic 35.0%
ATGTTGCAACCACATTTGTT+TGG - chr5.4:43543925-43543944 MS.gene59693:CDS 35.0%
CAACATAAAATGGAAGGGTT+TGG + chr5.4:43543816-43543835 None:intergenic 35.0%
GCATTAATCATATTCTCACC+TGG - chr5.4:43543436-43543455 MS.gene59693:CDS 35.0%
GTTGAATCTTGTTGAGGATT+TGG + chr5.4:43543877-43543896 None:intergenic 35.0%
TGCAATATATGCACCACAAA+GGG + chr5.4:43543419-43543438 None:intergenic 35.0%
TTCAACAATATGGGAGAAGA+AGG - chr5.4:43543949-43543968 MS.gene59693:CDS 35.0%
! CAAACCCTTCCATTTTATGT+TGG - chr5.4:43543814-43543833 MS.gene59693:CDS 35.0%
!! CAAATCAGGAACATTTTTGG+TGG - chr5.4:43543671-43543690 MS.gene59693:CDS 35.0%
AACAATATGGGAGAAGAAGG+TGG - chr5.4:43543952-43543971 MS.gene59693:CDS 40.0%
ATGGAAAAACTCTGCTGGAA+AGG + chr5.4:43543899-43543918 None:intergenic 40.0%
GAGCTCAATGGTATATTGAC+TGG - chr5.4:43543586-43543605 MS.gene59693:CDS 40.0%
GGAAAGGTTGAATCTTGTTG+AGG + chr5.4:43543883-43543902 None:intergenic 40.0%
TCAAGCGGAAAGAAAACTCA+AGG - chr5.4:43543289-43543308 MS.gene59693:CDS 40.0%
TGTTGCTCAACATGCTGATA+GGG - chr5.4:43543768-43543787 MS.gene59693:CDS 40.0%
TTGTTGCTCAACATGCTGAT+AGG - chr5.4:43543767-43543786 MS.gene59693:CDS 40.0%
! ATGATGTCATCATTTTGGGC+TGG + chr5.4:43543529-43543548 None:intergenic 40.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr5.4:43543381-43543400 None:intergenic 45.0%
GCTGATAGGGTTGAAATGCA+GGG - chr5.4:43543781-43543800 MS.gene59693:CDS 45.0%
GGGTTATGGAAAAACTCTGC+TGG + chr5.4:43543904-43543923 None:intergenic 45.0%
GTGGTTGCAACATAGGGTTA+TGG + chr5.4:43543918-43543937 None:intergenic 45.0%
GTTGGAAATGGTTCATCCTC+TGG - chr5.4:43543832-43543851 MS.gene59693:CDS 45.0%
TGCTGATAGGGTTGAAATGC+AGG - chr5.4:43543780-43543799 MS.gene59693:CDS 45.0%
!! CCTGGATTAGCTCATTCTCA+CGG + chr5.4:43543642-43543661 None:intergenic 45.0%
AAGGTGGACATGGTCCACAT+GGG - chr5.4:43543968-43543987 MS.gene59693:CDS 50.0%
ATGGGAGAAGAAGGTGGACA+TGG - chr5.4:43543958-43543977 MS.gene59693:CDS 50.0%
CCAGGTGCGAAAGACAAATC+AGG - chr5.4:43543657-43543676 MS.gene59693:CDS 50.0%
CCGTGAGAATGAGCTAATCC+AGG - chr5.4:43543639-43543658 MS.gene59693:CDS 50.0%
GGATTTGGCTGATGCTCAAG+AGG + chr5.4:43543862-43543881 None:intergenic 50.0%
TGAGGATTACCGTAGAGCCA+AGG - chr5.4:43543558-43543577 MS.gene59693:CDS 50.0%
! CCTGATTTGTCTTTCGCACC+TGG + chr5.4:43543660-43543679 None:intergenic 50.0%
!! ATGCTCAAGAGGCATTCCAG+AGG + chr5.4:43543851-43543870 None:intergenic 50.0%
AGCGAGCTTTGCACCCTTTG+TGG - chr5.4:43543403-43543422 MS.gene59693:CDS 55.0%
GAAGGTGGACATGGTCCACA+TGG - chr5.4:43543967-43543986 MS.gene59693:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr5.4:43543364-43543383 MS.gene59693:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr5.4:43543365-43543384 MS.gene59693:CDS 55.0%
ACCATTGAGCTCGCGCACCT+TGG + chr5.4:43543578-43543597 None:intergenic 60.0%
GCCAAGGTGCGCGAGCTCAA+TGG - chr5.4:43543574-43543593 MS.gene59693:CDS 65.0%
!! GCTCGCGCACCTTGGCTCTA+CGG + chr5.4:43543570-43543589 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr5.4 gene 43543286 43543999 43543286 ID=MS.gene59693
chr5.4 mRNA 43543286 43543999 43543286 ID=MS.gene59693.t1;Parent=MS.gene59693
chr5.4 exon 43543286 43543999 43543286 ID=MS.gene59693.t1.exon1;Parent=MS.gene59693.t1
chr5.4 CDS 43543286 43543999 43543286 ID=cds.MS.gene59693.t1;Parent=MS.gene59693.t1
Gene Sequence

>MS.gene59693

ATGTCAAGCGGAAAGAAAACTCAAGGTCGTAAAAAGATTGAGATGAAAAAGATGAGCAATGAAAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCTAGCGAGCTTTGCACCCTTTGTGGTGCATATATTGCATTAATCATATTCTCACCTGGTGAGAAAGTATTTTCATTTGGTCATCCAAATGTTGAAACGATCATAGATCGTTTTCTCTCTCAAGTTCCAGCCCAAAATGATGACATCATGCAATTAATTGAGGATTACCGTAGAGCCAAGGTGCGCGAGCTCAATGGTATATTGACTGGTATGAAAGATGCAATCGGCATCAATAAGAACCGTGAGAATGAGCTAATCCAGGTGCGAAAGACAAATCAGGAACATTTTTGGTGGACTCGTCCCATTTATGAGATGAATAAGGTCCAACTTGAATTATACAAGAAGGCTTTAGAGGATCTTCTTAAACTTGTTGCTCAACATGCTGATAGGGTTGAAATGCAGGGTACTTCTACCCAAACCCTTCCATTTTATGTTGGAAATGGTTCATCCTCTGGAATGCCTCTTGAGCATCAGCCAAATCCTCAACAAGATTCAACCTTTCCAGCAGAGTTTTTCCATAACCCTATGTTGCAACCACATTTGTTTGGTTTCAACAATATGGGAGAAGAAGGTGGACATGGTCCACATGGGTTCTTTTGA
Protein sequence

>MS.gene59693.t1

MSSGKKTQGRKKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGAYIALIIFSPGEKVFSFGHPNVETIIDRFLSQVPAQNDDIMQLIEDYRRAKVRELNGILTGMKDAIGINKNRENELIQVRKTNQEHFWWTRPIYEMNKVQLELYKKALEDLLKLVAQHADRVEMQGTSTQTLPFYVGNGSSSGMPLEHQPNPQQDSTFPAEFFHNPMLQPHLFGFNNMGEEGGHGPHGFF