AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene59913

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59913.t1 MTR_4g113280 96.134 388 4 1 1 388 113 489 0.0 765
MS.gene59913.t1 MTR_2g054940 89.948 388 39 0 1 388 124 511 0.0 738
MS.gene59913.t1 MTR_7g081695 87.071 379 37 1 1 379 124 490 0.0 687
MS.gene59913.t1 MTR_1g076430 81.186 388 73 0 1 388 125 512 0.0 678
MS.gene59913.t1 MTR_1g041085 81.443 388 72 0 1 388 131 518 0.0 670
MS.gene59913.t1 MTR_7g118170 74.536 377 93 2 10 383 153 529 0.0 603
MS.gene59913.t1 MTR_4g070270 71.466 382 108 1 1 382 122 502 0.0 586
MS.gene59913.t1 MTR_1g110930 66.062 386 128 2 1 385 110 493 0.0 549
MS.gene59913.t1 MTR_5g056510 66.580 386 126 2 1 385 110 493 0.0 548
MS.gene59913.t1 MTR_6g074880 63.117 385 141 1 1 384 86 470 0.0 515
MS.gene59913.t1 MTR_4g054630 62.924 383 141 1 1 382 84 466 0.0 513
MS.gene59913.t1 MTR_4g054415 62.924 383 141 1 1 382 43 425 0.0 512
MS.gene59913.t1 MTR_6g032965 60.574 383 151 0 1 383 3 385 5.05e-178 501
MS.gene59913.t1 MTR_3g105550 58.163 392 154 2 1 382 145 536 4.69e-175 499
MS.gene59913.t1 MTR_7g118160 57.105 373 116 3 10 380 87 417 9.96e-154 440
MS.gene59913.t1 MTR_2g013740 58.904 365 146 2 10 374 143 503 5.58e-152 439
MS.gene59913.t1 MTR_2g007020 54.133 375 170 2 10 383 79 452 7.52e-150 432
MS.gene59913.t1 MTR_2g436480 50.000 384 189 2 1 382 69 451 2.00e-142 412
MS.gene59913.t1 MTR_1g102290 46.194 381 204 1 1 380 104 484 3.91e-124 367
MS.gene59913.t1 MTR_3g072980 45.119 379 207 1 2 380 106 483 1.58e-115 345
MS.gene59913.t1 MTR_3g072940 45.119 379 207 1 2 380 106 483 1.74e-115 345
MS.gene59913.t1 MTR_6g051440 45.383 379 206 1 2 380 105 482 7.36e-110 331
MS.gene59913.t1 MTR_4g062270 42.818 369 203 3 16 379 68 433 2.58e-104 316
MS.gene59913.t1 MTR_1g115560 40.665 391 207 4 13 381 66 453 9.23e-103 312
MS.gene59913.t1 MTR_4g062190 40.682 381 203 4 16 379 68 442 2.55e-101 308
MS.gene59913.t1 MTR_2g096210 40.365 384 208 4 13 379 65 444 7.75e-101 307
MS.gene59913.t1 MTR_4g062170 41.775 383 201 5 13 379 65 441 8.81e-99 302
MS.gene59913.t1 MTR_4g054260 55.469 256 96 2 128 382 87 325 1.34e-97 294
MS.gene59913.t1 MTR_4g053905 66.667 159 53 0 224 382 1 159 1.72e-75 231
MS.gene59913.t1 MTR_4g054265 52.000 75 36 0 1 75 43 117 3.15e-20 85.9
MS.gene59913.t1 MTR_7g086260 60.000 50 20 0 222 271 25 74 7.82e-14 67.0
MS.gene59913.t1 MTR_3g086260 25.843 267 157 8 105 361 154 389 1.80e-12 68.6
MS.gene59913.t1 MTR_4g075560 26.639 244 142 8 114 349 164 378 3.01e-11 64.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene59913.t1 AT2G26640 85.309 388 57 0 1 388 122 509 0.0 709
MS.gene59913.t1 AT1G04220 77.975 395 80 3 1 388 127 521 0.0 644
MS.gene59913.t1 AT5G43760 78.934 394 77 3 1 388 133 526 0.0 635
MS.gene59913.t1 AT1G19440 71.842 380 106 1 1 380 134 512 0.0 590
MS.gene59913.t1 AT2G16280 71.204 382 109 1 1 382 130 510 0.0 588
MS.gene59913.t1 AT1G01120 70.667 375 109 1 9 382 152 526 0.0 586
MS.gene59913.t1 AT4G34510 67.624 383 122 2 1 382 104 485 0.0 559
MS.gene59913.t1 AT1G68530 65.714 385 131 1 1 385 111 494 0.0 543
MS.gene59913.t1 AT1G25450 65.195 385 133 1 1 385 106 489 0.0 537
MS.gene59913.t1 AT2G46720 63.564 376 133 2 10 382 91 465 0.0 518
MS.gene59913.t1 AT2G15090 66.033 368 124 1 15 382 113 479 0.0 516
MS.gene59913.t1 AT4G34520 63.158 380 138 2 4 382 112 490 1.15e-177 504
MS.gene59913.t1 AT3G10280 62.234 376 131 3 10 382 91 458 2.80e-176 499
MS.gene59913.t1 AT2G26250 56.511 407 149 2 1 380 143 548 6.62e-172 491
MS.gene59913.t1 AT4G34250 61.685 368 140 1 15 382 121 487 7.83e-172 489
MS.gene59913.t1 AT5G49070 51.181 381 179 3 12 388 84 461 3.73e-139 405
MS.gene59913.t1 AT1G71160 50.538 372 182 2 9 380 77 446 2.13e-138 402
MS.gene59913.t1 AT3G52160 49.448 362 152 2 10 371 6 336 2.56e-129 375
MS.gene59913.t1 AT3G52160 49.448 362 152 2 10 371 119 449 1.87e-127 374
MS.gene59913.t1 AT5G04530 42.246 374 206 4 13 379 67 437 7.78e-106 320
MS.gene59913.t1 AT2G28630 41.542 402 208 6 5 379 45 446 1.70e-105 319
MS.gene59913.t1 AT2G28630 41.542 402 208 6 5 379 45 446 1.70e-105 319
MS.gene59913.t1 AT1G68530 60.669 239 94 0 1 239 111 349 8.17e-105 314
MS.gene59913.t1 AT1G07720 43.194 382 197 5 16 379 68 447 2.03e-102 311
MS.gene59913.t1 AT1G07720 43.194 382 197 5 16 379 111 490 2.66e-102 312
MS.gene59913.t1 AT5G49070 47.391 230 121 0 12 241 84 313 1.46e-73 232
MS.gene59913.t1 AT4G34850 25.781 256 152 9 113 359 91 317 2.03e-13 70.9
MS.gene59913.t1 AT4G34850 25.781 256 152 9 113 359 164 390 4.80e-13 70.5

Find 95 sgRNAs with CRISPR-Local

Find 104 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATCACATTGAATTGGTATTT+TGG 0.124443 8.4:+15003870 MS.gene59913:CDS
TGCCATTGGCATCTTCTTCT+TGG 0.201240 8.4:-15004055 None:intergenic
TGCCGGAGGTAGAGCTGTTT+TGG 0.290721 8.4:+15004283 MS.gene59913:CDS
AGGATGACACTTTATCGTTT+TGG 0.293129 8.4:+15004356 MS.gene59913:CDS
TCCCTTCTTAATTCTCCCTT+TGG 0.293276 8.4:-15004426 None:intergenic
ATGACCAATGCATAGGAATT+AGG 0.295997 8.4:-15003834 None:intergenic
ATCAGAATTCCTATATCTTT+AGG 0.301992 8.4:-15003651 None:intergenic
TACCTTGTCAAAAGATCTTA+TGG 0.307989 8.4:+15004088 MS.gene59913:CDS
AGCTTGAAATCAGGAATATA+AGG 0.312020 8.4:-15004236 None:intergenic
TTTCTAGCTTCTTTCATTGA+AGG 0.316291 8.4:-15003567 None:intergenic
GCTTCTTTCATTGAAGGATT+AGG 0.319754 8.4:-15003561 None:intergenic
CGATAAAGTGTCATCCTTGA+TGG 0.332202 8.4:-15004350 None:intergenic
GGTGGGATGGGTTGCAGTGC+GGG 0.335773 8.4:+15003768 MS.gene59913:CDS
TGGCAAATAGCATTTGGTTC+TGG 0.340846 8.4:+15004458 MS.gene59913:CDS
GCCATTGGCATCTTCTTCTT+GGG 0.342521 8.4:-15004054 None:intergenic
GAAGATGCCAATGGCAATAT+TGG 0.352257 8.4:+15004062 MS.gene59913:CDS
CAGTTCACTTTGGTATGAAT+TGG 0.362955 8.4:+15004391 MS.gene59913:CDS
TTCTAATTGTTTGTTTCGAA+TGG 0.382081 8.4:+15003914 MS.gene59913:CDS
GTTCAGATGGTAGATACCTT+TGG 0.409315 8.4:-15004584 None:intergenic
ACAGTAAAGCCTAAAGATAT+AGG 0.416419 8.4:+15003642 MS.gene59913:CDS
AAAGATCTTATGGCAGTTGC+CGG 0.419635 8.4:+15004098 MS.gene59913:CDS
AGAACATGGCAAATAGCATT+TGG 0.419756 8.4:+15004452 MS.gene59913:CDS
GATACCTTTGGAACATCAAC+AGG 0.425393 8.4:-15004572 None:intergenic
TTGGAACATCAACAGGAAAC+TGG 0.427742 8.4:-15004565 None:intergenic
TCTAATTGTTTGTTTCGAAT+GGG 0.432398 8.4:+15003915 MS.gene59913:CDS
TGGAGAATATCACATTGAAT+TGG 0.437805 8.4:+15003862 MS.gene59913:CDS
TGCGAACCGTGGTGATCAAT+TGG 0.438062 8.4:-15003992 None:intergenic
GCAGCTATCACCATGGCATA+TGG 0.439140 8.4:+15004325 MS.gene59913:CDS
TTGAAGATAGCGACGGAGTT+GGG 0.440924 8.4:-15003695 None:intergenic
CGAAAGATTCTTGAGAGATC+GGG 0.455522 8.4:+15003492 MS.gene59913:CDS
CTGTTCTTCACCACATTGGT+TGG 0.466086 8.4:+15004185 MS.gene59913:CDS
TTCTTGAGAGATCGGGACTC+GGG 0.466115 8.4:+15003499 MS.gene59913:CDS
ATTCTTGAGAGATCGGGACT+CGG 0.466508 8.4:+15003498 MS.gene59913:CDS
GGAAAGTTAAGAACAGCCTC+TGG 0.468115 8.4:-15003537 None:intergenic
TCAAAAGCTAGCTTGAAATC+AGG 0.468264 8.4:-15004245 None:intergenic
GCGAAAGATTCTTGAGAGAT+CGG 0.468284 8.4:+15003491 MS.gene59913:CDS
AACAGTAGTTGTTCTGATGT+TGG 0.477505 8.4:-15004167 None:intergenic
TGTTCTTCACCACATTGGTT+GGG 0.482146 8.4:+15004186 MS.gene59913:CDS
GTGCAGTGTGGAAGGCTCTC+AGG 0.489224 8.4:+15004495 MS.gene59913:CDS
AGCTACAACCTAGGTGGGAT+GGG 0.489907 8.4:+15003756 MS.gene59913:CDS
AAAACTAATATCACTACGCT+AGG 0.493178 8.4:+15004131 MS.gene59913:CDS
AGCCAAAGGGAGAATTAAGA+AGG 0.519483 8.4:+15004424 MS.gene59913:CDS
ATTGAAGATAGCGACGGAGT+TGG 0.522625 8.4:-15003696 None:intergenic
GTCAATCATTACAAGCTTCG+AGG 0.523795 8.4:+15003723 MS.gene59913:CDS
CTTACTAAATAGCTCATCAA+TGG 0.525994 8.4:-15003616 None:intergenic
CTATGCATTGGTCATTAGCA+TGG 0.531088 8.4:+15003842 MS.gene59913:CDS
GGAAATTTATGGATCAGTCT+AGG 0.532242 8.4:+15003430 None:intergenic
CATAGGAATTAGGATTGGCC+TGG 0.532315 8.4:-15003824 None:intergenic
ATCCAAAACAGCTCTACCTC+CGG 0.535564 8.4:-15004285 None:intergenic
CAATCCTAATTCCTATGCAT+TGG 0.538699 8.4:+15003830 MS.gene59913:CDS
GTGCAACAGTGCAGTGTGGA+AGG 0.541767 8.4:+15004487 MS.gene59913:CDS
GAGCTACAACCTAGGTGGGA+TGG 0.541792 8.4:+15003755 MS.gene59913:CDS
CATGGCATATGGAGCCATCA+AGG 0.542439 8.4:+15004336 MS.gene59913:CDS
AGGTGGGATGGGTTGCAGTG+CGG 0.542640 8.4:+15003767 MS.gene59913:CDS
TCTTTCATTGAAGGATTAGG+AGG 0.545431 8.4:-15003558 None:intergenic
GTGGGATGGGTTGCAGTGCG+GGG 0.548925 8.4:+15003769 MS.gene59913:CDS
GTTTCCTGTTGATGTTCCAA+AGG 0.557767 8.4:+15004568 MS.gene59913:CDS
ACACATCTAGCAGTTCACTT+TGG 0.560068 8.4:+15004381 MS.gene59913:CDS
TGGTCAATCTCATCTATCCA+AGG 0.561417 8.4:-15004545 None:intergenic
GTTTCGAATGGGAGGAGCTG+TGG 0.564123 8.4:+15003926 MS.gene59913:CDS
GAAGCTGAGACTGTGATGTT+CGG 0.565891 8.4:+15003591 MS.gene59913:CDS
TCAATCATTACAAGCTTCGA+GGG 0.569665 8.4:+15003724 MS.gene59913:CDS
ACTACTGTTCTTCACCACAT+TGG 0.569759 8.4:+15004181 MS.gene59913:CDS
AATTGTTTGTTTCGAATGGG+AGG 0.571309 8.4:+15003918 MS.gene59913:CDS
AATATAAAGAGCTACAACCT+AGG 0.575611 8.4:+15003747 MS.gene59913:CDS
CAGGACAATCAACCCTGTGA+AGG 0.575639 8.4:+15004514 MS.gene59913:CDS
TTACAATCTCGTCGTTCAGA+TGG 0.578695 8.4:-15004597 None:intergenic
TCTTGCTAAAGATCTTCTCC+AGG 0.579124 8.4:+15003806 MS.gene59913:CDS
TAAAGAGCTACAACCTAGGT+GGG 0.586492 8.4:+15003751 MS.gene59913:CDS
TGGCTTACACAGAAGCCAAA+GGG 0.588822 8.4:+15004411 MS.gene59913:CDS
GGTAACACCAATATTGCCAT+TGG 0.592052 8.4:-15004069 None:intergenic
AAACAGCTCTACCTCCGGCA+TGG 0.599316 8.4:-15004280 None:intergenic
CAATGCATAGGAATTAGGAT+TGG 0.604720 8.4:-15003829 None:intergenic
CACCACGGTTCGCACTAACA+AGG 0.615650 8.4:+15004001 MS.gene59913:CDS
TCTTGAGAGATCGGGACTCG+GGG 0.615846 8.4:+15003500 MS.gene59913:CDS
GCCAAAGGGAGAATTAAGAA+GGG 0.617206 8.4:+15004425 MS.gene59913:CDS
CATGCTAATGACCAATGCAT+AGG 0.618448 8.4:-15003841 None:intergenic
TATATCTTTAGGCTTTACTG+TGG 0.620510 8.4:-15003640 None:intergenic
TTGGCTTACACAGAAGCCAA+AGG 0.624548 8.4:+15004410 MS.gene59913:CDS
CTGTGAAGGAGAAAAGCCCT+TGG 0.625413 8.4:+15004528 MS.gene59913:CDS
AAACTAATATCACTACGCTA+GGG 0.626894 8.4:+15004132 MS.gene59913:CDS
GGTCAATCTCATCTATCCAA+GGG 0.627776 8.4:-15004544 None:intergenic
CACTGCAACCCATCCCACCT+AGG 0.640569 8.4:-15003764 None:intergenic
ATAAAGAGCTACAACCTAGG+TGG 0.642158 8.4:+15003750 MS.gene59913:CDS
TCTGATGTTGGAAGTACGAG+AGG 0.642235 8.4:-15004155 None:intergenic
GGAATCTACTTATCTTCCAG+AGG 0.644232 8.4:+15003521 MS.gene59913:CDS
TTAAGAAGGGAGATAGAACA+TGG 0.646961 8.4:+15004438 MS.gene59913:CDS
ACCCAAGAAGAAGATGCCAA+TGG 0.668165 8.4:+15004053 MS.gene59913:CDS
AAGTTTCTTCCCAACCAATG+TGG 0.668173 8.4:-15004195 None:intergenic
ACAATCATTGAAGATAGCGA+CGG 0.668618 8.4:-15003702 None:intergenic
CTTGATGGCTCCATATGCCA+TGG 0.676445 8.4:-15004335 None:intergenic
TCAAGTGCAACAGTGCAGTG+TGG 0.695312 8.4:+15004483 MS.gene59913:CDS
AAAACTTGCAGCTATCACCA+TGG 0.706018 8.4:+15004318 MS.gene59913:CDS
AGCCTTGTTAGTGCGAACCG+TGG 0.715624 8.4:-15004003 None:intergenic
AAAATACCAATTGATCACCA+CGG 0.722409 8.4:+15003986 MS.gene59913:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
! ATCAGAATTCCTATATCTTT+AGG - chr8.4:15003654-15003673 None:intergenic 25.0%
! TCTAATTGTTTGTTTCGAAT+GGG + chr8.4:15003915-15003934 MS.gene59913:CDS 25.0%
! TTCTAATTGTTTGTTTCGAA+TGG + chr8.4:15003914-15003933 MS.gene59913:CDS 25.0%
!! ATCACATTGAATTGGTATTT+TGG + chr8.4:15003870-15003889 MS.gene59913:CDS 25.0%
!!! ATTAGTTTTTAAAGCATCAC+CGG - chr8.4:15004120-15004139 None:intergenic 25.0%
AAAACTAATATCACTACGCT+AGG + chr8.4:15004131-15004150 MS.gene59913:CDS 30.0%
AAAATACCAATTGATCACCA+CGG + chr8.4:15003986-15004005 MS.gene59913:CDS 30.0%
AAACTAATATCACTACGCTA+GGG + chr8.4:15004132-15004151 MS.gene59913:CDS 30.0%
AATATAAAGAGCTACAACCT+AGG + chr8.4:15003747-15003766 MS.gene59913:CDS 30.0%
ACAGTAAAGCCTAAAGATAT+AGG + chr8.4:15003642-15003661 MS.gene59913:CDS 30.0%
AGCTTGAAATCAGGAATATA+AGG - chr8.4:15004239-15004258 None:intergenic 30.0%
CTTACTAAATAGCTCATCAA+TGG - chr8.4:15003619-15003638 None:intergenic 30.0%
TACCTTGTCAAAAGATCTTA+TGG + chr8.4:15004088-15004107 MS.gene59913:CDS 30.0%
TATATCTTTAGGCTTTACTG+TGG - chr8.4:15003643-15003662 None:intergenic 30.0%
TGGAGAATATCACATTGAAT+TGG + chr8.4:15003862-15003881 MS.gene59913:CDS 30.0%
! TAGGATGATCAGTACTTTTA+CGG + chr8.4:15003449-15003468 MS.gene59913:CDS 30.0%
!! ATTGGTATTTTGGAAACGAT+CGG + chr8.4:15003880-15003899 MS.gene59913:CDS 30.0%
!! TTTCTAGCTTCTTTCATTGA+AGG - chr8.4:15003570-15003589 None:intergenic 30.0%
AACAGTAGTTGTTCTGATGT+TGG - chr8.4:15004170-15004189 None:intergenic 35.0%
AATTGTTTGTTTCGAATGGG+AGG + chr8.4:15003918-15003937 MS.gene59913:CDS 35.0%
ACAATCATTGAAGATAGCGA+CGG - chr8.4:15003705-15003724 None:intergenic 35.0%
AGAACATGGCAAATAGCATT+TGG + chr8.4:15004452-15004471 MS.gene59913:CDS 35.0%
ATGACCAATGCATAGGAATT+AGG - chr8.4:15003837-15003856 None:intergenic 35.0%
CAATCCTAATTCCTATGCAT+TGG + chr8.4:15003830-15003849 MS.gene59913:CDS 35.0%
CAATGCATAGGAATTAGGAT+TGG - chr8.4:15003832-15003851 None:intergenic 35.0%
CAGTTCACTTTGGTATGAAT+TGG + chr8.4:15004391-15004410 MS.gene59913:CDS 35.0%
GCTTCTTTCATTGAAGGATT+AGG - chr8.4:15003564-15003583 None:intergenic 35.0%
TCAATCATTACAAGCTTCGA+GGG + chr8.4:15003724-15003743 MS.gene59913:CDS 35.0%
TCTTTCATTGAAGGATTAGG+AGG - chr8.4:15003561-15003580 None:intergenic 35.0%
TTAAGAAGGGAGATAGAACA+TGG + chr8.4:15004438-15004457 MS.gene59913:CDS 35.0%
! AGGATGACACTTTATCGTTT+TGG + chr8.4:15004356-15004375 MS.gene59913:CDS 35.0%
! TCAAAAGCTAGCTTGAAATC+AGG - chr8.4:15004248-15004267 None:intergenic 35.0%
! TGCCATAAGATCTTTTGACA+AGG - chr8.4:15004093-15004112 None:intergenic 35.0%
! TTTTGATCTTCTTCTGTCTG+AGG - chr8.4:15003970-15003989 None:intergenic 35.0%
!! TCTTCTGTCTGAGGTTTTAT+TGG - chr8.4:15003961-15003980 None:intergenic 35.0%
AAAACTTGCAGCTATCACCA+TGG + chr8.4:15004318-15004337 MS.gene59913:CDS 40.0%
AAAGATCTTATGGCAGTTGC+CGG + chr8.4:15004098-15004117 MS.gene59913:CDS 40.0%
AAGTTTCTTCCCAACCAATG+TGG - chr8.4:15004198-15004217 None:intergenic 40.0%
ACACATCTAGCAGTTCACTT+TGG + chr8.4:15004381-15004400 MS.gene59913:CDS 40.0%
ACTACTGTTCTTCACCACAT+TGG + chr8.4:15004181-15004200 MS.gene59913:CDS 40.0%
AGCCAAAGGGAGAATTAAGA+AGG + chr8.4:15004424-15004443 MS.gene59913:CDS 40.0%
ATAAAGAGCTACAACCTAGG+TGG + chr8.4:15003750-15003769 MS.gene59913:CDS 40.0%
CATGCTAATGACCAATGCAT+AGG - chr8.4:15003844-15003863 None:intergenic 40.0%
CGAAAGATTCTTGAGAGATC+GGG + chr8.4:15003492-15003511 MS.gene59913:CDS 40.0%
GAAGATGCCAATGGCAATAT+TGG + chr8.4:15004062-15004081 MS.gene59913:CDS 40.0%
GCCAAAGGGAGAATTAAGAA+GGG + chr8.4:15004425-15004444 MS.gene59913:CDS 40.0%
GCGAAAGATTCTTGAGAGAT+CGG + chr8.4:15003491-15003510 MS.gene59913:CDS 40.0%
GGAATCTACTTATCTTCCAG+AGG + chr8.4:15003521-15003540 MS.gene59913:CDS 40.0%
GGTAACACCAATATTGCCAT+TGG - chr8.4:15004072-15004091 None:intergenic 40.0%
GGTCAATCTCATCTATCCAA+GGG - chr8.4:15004547-15004566 None:intergenic 40.0%
GTCAATCATTACAAGCTTCG+AGG + chr8.4:15003723-15003742 MS.gene59913:CDS 40.0%
GTTTCCTGTTGATGTTCCAA+AGG + chr8.4:15004568-15004587 MS.gene59913:CDS 40.0%
TAAAGAGCTACAACCTAGGT+GGG + chr8.4:15003751-15003770 MS.gene59913:CDS 40.0%
TCCCTTCTTAATTCTCCCTT+TGG - chr8.4:15004429-15004448 None:intergenic 40.0%
TCTTGCTAAAGATCTTCTCC+AGG + chr8.4:15003806-15003825 MS.gene59913:CDS 40.0%
TGGTCAATCTCATCTATCCA+AGG - chr8.4:15004548-15004567 None:intergenic 40.0%
TTGGAACATCAACAGGAAAC+TGG - chr8.4:15004568-15004587 None:intergenic 40.0%
! CGATAAAGTGTCATCCTTGA+TGG - chr8.4:15004353-15004372 None:intergenic 40.0%
! CTATGCATTGGTCATTAGCA+TGG + chr8.4:15003842-15003861 MS.gene59913:CDS 40.0%
! GAACATTTTTGCATCCATGC+CGG + chr8.4:15004266-15004285 MS.gene59913:CDS 40.0%
! GATGATCAGTACTTTTACGG+AGG + chr8.4:15003452-15003471 MS.gene59913:CDS 40.0%
! TGGCAAATAGCATTTGGTTC+TGG + chr8.4:15004458-15004477 MS.gene59913:CDS 40.0%
! TGTTCTTCACCACATTGGTT+GGG + chr8.4:15004186-15004205 MS.gene59913:CDS 40.0%
!! GATACCTTTGGAACATCAAC+AGG - chr8.4:15004575-15004594 None:intergenic 40.0%
!! TAGAGCTGTTTTGGATGAAC+TGG + chr8.4:15004292-15004311 MS.gene59913:CDS 40.0%
ACCCAAGAAGAAGATGCCAA+TGG + chr8.4:15004053-15004072 MS.gene59913:CDS 45.0%
ATCCAAAACAGCTCTACCTC+CGG - chr8.4:15004288-15004307 None:intergenic 45.0%
ATTCTTGAGAGATCGGGACT+CGG + chr8.4:15003498-15003517 MS.gene59913:CDS 45.0%
ATTGAAGATAGCGACGGAGT+TGG - chr8.4:15003699-15003718 None:intergenic 45.0%
CTGTTCTTCACCACATTGGT+TGG + chr8.4:15004185-15004204 MS.gene59913:CDS 45.0%
GAAGCTGAGACTGTGATGTT+CGG + chr8.4:15003591-15003610 MS.gene59913:CDS 45.0%
GCCATTGGCATCTTCTTCTT+GGG - chr8.4:15004057-15004076 None:intergenic 45.0%
GGAAAGTTAAGAACAGCCTC+TGG - chr8.4:15003540-15003559 None:intergenic 45.0%
TGCCATTGGCATCTTCTTCT+TGG - chr8.4:15004058-15004077 None:intergenic 45.0%
TGGCTTACACAGAAGCCAAA+GGG + chr8.4:15004411-15004430 MS.gene59913:CDS 45.0%
TTGAAGATAGCGACGGAGTT+GGG - chr8.4:15003698-15003717 None:intergenic 45.0%
TTGGCTTACACAGAAGCCAA+AGG + chr8.4:15004410-15004429 MS.gene59913:CDS 45.0%
! AAGGGCTTTTCTCCTTCACA+GGG - chr8.4:15004529-15004548 None:intergenic 45.0%
! TCTGATGTTGGAAGTACGAG+AGG - chr8.4:15004158-15004177 None:intergenic 45.0%
!! CATAGGAATTAGGATTGGCC+TGG - chr8.4:15003827-15003846 None:intergenic 45.0%
AGCTACAACCTAGGTGGGAT+GGG + chr8.4:15003756-15003775 MS.gene59913:CDS 50.0%
CAGGACAATCAACCCTGTGA+AGG + chr8.4:15004514-15004533 MS.gene59913:CDS 50.0%
CATGGCATATGGAGCCATCA+AGG + chr8.4:15004336-15004355 MS.gene59913:CDS 50.0%
CTGTGAAGGAGAAAAGCCCT+TGG + chr8.4:15004528-15004547 MS.gene59913:CDS 50.0%
GCAGCTATCACCATGGCATA+TGG + chr8.4:15004325-15004344 MS.gene59913:CDS 50.0%
TCAAGTGCAACAGTGCAGTG+TGG + chr8.4:15004483-15004502 MS.gene59913:CDS 50.0%
TGCGAACCGTGGTGATCAAT+TGG - chr8.4:15003995-15004014 None:intergenic 50.0%
TTCTTGAGAGATCGGGACTC+GGG + chr8.4:15003499-15003518 MS.gene59913:CDS 50.0%
! CAAGGGCTTTTCTCCTTCAC+AGG - chr8.4:15004530-15004549 None:intergenic 50.0%
! CATTTTTGCATCCATGCCGG+AGG + chr8.4:15004269-15004288 MS.gene59913:CDS 50.0%
! CTTGATGGCTCCATATGCCA+TGG - chr8.4:15004338-15004357 None:intergenic 50.0%
AAACAGCTCTACCTCCGGCA+TGG - chr8.4:15004283-15004302 None:intergenic 55.0%
CACCACGGTTCGCACTAACA+AGG + chr8.4:15004001-15004020 MS.gene59913:CDS 55.0%
GAGCTACAACCTAGGTGGGA+TGG + chr8.4:15003755-15003774 MS.gene59913:CDS 55.0%
GTGCAACAGTGCAGTGTGGA+AGG + chr8.4:15004487-15004506 MS.gene59913:CDS 55.0%
GTTTCGAATGGGAGGAGCTG+TGG + chr8.4:15003926-15003945 MS.gene59913:CDS 55.0%
TCTTGAGAGATCGGGACTCG+GGG + chr8.4:15003500-15003519 MS.gene59913:CDS 55.0%
! TGCCGGAGGTAGAGCTGTTT+TGG + chr8.4:15004283-15004302 MS.gene59913:CDS 55.0%
!! AGCCTTGTTAGTGCGAACCG+TGG - chr8.4:15004006-15004025 None:intergenic 55.0%
CACTGCAACCCATCCCACCT+AGG - chr8.4:15003767-15003786 None:intergenic 60.0%
GTGCAGTGTGGAAGGCTCTC+AGG + chr8.4:15004495-15004514 MS.gene59913:CDS 60.0%
!! AGGTGGGATGGGTTGCAGTG+CGG + chr8.4:15003767-15003786 MS.gene59913:CDS 60.0%
!! GGTGGGATGGGTTGCAGTGC+GGG + chr8.4:15003768-15003787 MS.gene59913:CDS 65.0%
!! GTGGGATGGGTTGCAGTGCG+GGG + chr8.4:15003769-15003788 MS.gene59913:CDS 65.0%


Chromosome Type Strat End Strand Name
chr8.4 gene 15003438 15004604 15003438 ID=MS.gene59913
chr8.4 mRNA 15003438 15004604 15003438 ID=MS.gene59913.t1;Parent=MS.gene59913
chr8.4 exon 15003438 15004604 15003438 ID=MS.gene59913.t1.exon1;Parent=MS.gene59913.t1
chr8.4 CDS 15003438 15004604 15003438 ID=cds.MS.gene59913.t1;Parent=MS.gene59913.t1
Gene Sequence

>MS.gene59913

ATGGATCAGTCTAGGATGATCAGTACTTTTACGGAGGAAAATCTTGAATTTCAGCGAAAGATTCTTGAGAGATCGGGACTCGGGGAATCTACTTATCTTCCAGAGGCTGTTCTTAACTTTCCTCCTAATCCTTCAATGAAAGAAGCTAGAAAAGAAGCTGAGACTGTGATGTTCGGTGCCATTGATGAGCTATTTAGTAAGACCACAGTAAAGCCTAAAGATATAGGAATTCTGATTGTAAATTGTAGCTTGTTCAACCCAACTCCGTCGCTATCTTCAATGATTGTCAATCATTACAAGCTTCGAGGGAATATAAAGAGCTACAACCTAGGTGGGATGGGTTGCAGTGCGGGGCTGATCTCGATTGATCTTGCTAAAGATCTTCTCCAGGCCAATCCTAATTCCTATGCATTGGTCATTAGCATGGAGAATATCACATTGAATTGGTATTTTGGAAACGATCGGTCGAAACTTGTTTCTAATTGTTTGTTTCGAATGGGAGGAGCTGTGGTTCTGCTTTCCAATAAAACCTCAGACAGAAGAAGATCAAAATACCAATTGATCACCACGGTTCGCACTAACAAGGCTTCTGATGACAAGTGTTTTAGCTGTGTAACCCAAGAAGAAGATGCCAATGGCAATATTGGTGTTACCTTGTCAAAAGATCTTATGGCAGTTGCCGGTGATGCTTTAAAAACTAATATCACTACGCTAGGGCCTCTCGTACTTCCAACATCAGAACAACTACTGTTCTTCACCACATTGGTTGGGAAGAAACTTTTCAAGATGAAGATAAAACCTTATATTCCTGATTTCAAGCTAGCTTTTGAACATTTTTGCATCCATGCCGGAGGTAGAGCTGTTTTGGATGAACTGGAGAAAAACTTGCAGCTATCACCATGGCATATGGAGCCATCAAGGATGACACTTTATCGTTTTGGAAACACATCTAGCAGTTCACTTTGGTATGAATTGGCTTACACAGAAGCCAAAGGGAGAATTAAGAAGGGAGATAGAACATGGCAAATAGCATTTGGTTCTGGATTCAAGTGCAACAGTGCAGTGTGGAAGGCTCTCAGGACAATCAACCCTGTGAAGGAGAAAAGCCCTTGGATAGATGAGATTGACCAGTTTCCTGTTGATGTTCCAAAGGTATCTACCATCTGA
Protein sequence

>MS.gene59913.t1

MDQSRMISTFTEENLEFQRKILERSGLGESTYLPEAVLNFPPNPSMKEARKEAETVMFGAIDELFSKTTVKPKDIGILIVNCSLFNPTPSLSSMIVNHYKLRGNIKSYNLGGMGCSAGLISIDLAKDLLQANPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAVVLLSNKTSDRRRSKYQLITTVRTNKASDDKCFSCVTQEEDANGNIGVTLSKDLMAVAGDALKTNITTLGPLVLPTSEQLLFFTTLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSPWHMEPSRMTLYRFGNTSSSSLWYELAYTEAKGRIKKGDRTWQIAFGSGFKCNSAVWKALRTINPVKEKSPWIDEIDQFPVDVPKVSTI