AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60016

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60016.t1 MTR_6g082400 91.272 401 33 1 1 399 1 401 0.0 644
MS.gene60016.t1 MTR_8g106245 48.098 368 139 16 22 382 20 342 2.77e-78 253
MS.gene60016.t1 MTR_1g109470 42.677 396 165 16 3 357 14 388 4.71e-72 240
MS.gene60016.t1 MTR_4g091530 43.023 258 111 12 58 298 28 266 3.96e-42 153
MS.gene60016.t1 MTR_2g461180 43.931 173 74 7 38 200 190 349 1.70e-29 121
MS.gene60016.t1 MTR_2g010160 41.139 158 70 4 16 165 3 145 3.07e-29 118
MS.gene60016.t1 MTR_4g092850 49.091 110 49 4 58 165 38 142 1.41e-26 110
MS.gene60016.t1 MTR_4g116520 40.000 155 78 6 42 193 139 281 1.32e-25 109
MS.gene60016.t1 MTR_6g033130 42.857 140 62 5 31 164 162 289 5.40e-24 105
MS.gene60016.t1 MTR_6g033130 43.939 132 56 5 39 164 170 289 7.49e-24 104
MS.gene60016.t1 MTR_1g090020 46.729 107 50 3 58 164 193 292 4.57e-23 102
MS.gene60016.t1 MTR_2g005700 40.476 126 63 3 44 169 2 115 1.09e-22 98.2
MS.gene60016.t1 MTR_5g067120 46.789 109 52 3 58 165 26 129 3.25e-22 97.8
MS.gene60016.t1 MTR_8g442400 37.255 153 87 4 59 210 179 323 4.57e-20 93.2
MS.gene60016.t1 MTR_4g128650 42.029 138 71 4 56 193 25 153 4.71e-20 93.2
MS.gene60016.t1 MTR_5g488180 45.536 112 51 5 58 165 3 108 7.70e-20 87.8
MS.gene60016.t1 MTR_5g088090 45.536 112 51 5 58 165 3 108 7.70e-20 87.8
MS.gene60016.t1 MTR_5g088140 45.536 112 51 5 58 165 3 108 7.70e-20 87.8
MS.gene60016.t1 MTR_5g088590 44.643 112 52 5 58 165 3 108 1.30e-19 87.4
MS.gene60016.t1 MTR_5g032960 46.000 100 53 1 55 154 12 110 1.57e-19 87.0
MS.gene60016.t1 MTR_5g088120 44.643 112 52 5 58 165 3 108 2.86e-19 85.5
MS.gene60016.t1 MTR_5g488190 44.643 112 52 5 58 165 3 108 2.86e-19 85.5
MS.gene60016.t1 MTR_3g077030 41.322 121 63 3 55 175 5 117 1.06e-18 84.3
MS.gene60016.t1 MTR_5g067160 39.189 148 73 6 56 193 40 180 1.73e-18 87.0
MS.gene60016.t1 MTR_5g088040 42.857 112 54 5 58 165 3 108 2.38e-18 83.6
MS.gene60016.t1 MTR_5g088620 42.857 112 54 5 58 165 3 108 5.91e-18 82.4
MS.gene60016.t1 MTR_4g105020 46.316 95 49 1 55 149 5 97 6.05e-18 81.3
MS.gene60016.t1 MTR_5g488200 45.545 101 45 5 69 165 168 262 2.31e-14 74.3
MS.gene60016.t1 MTR_5g067200 44.048 84 41 2 81 164 14 91 1.01e-13 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60016.t1 AT2G01190 47.244 381 152 13 18 361 33 401 1.52e-83 270
MS.gene60016.t1 AT3G18230 50.282 354 140 11 54 381 59 402 1.70e-80 260
MS.gene60016.t1 AT4G05150 44.667 150 59 5 58 193 58 197 4.62e-34 132
MS.gene60016.t1 AT1G25300 53.704 108 41 2 58 165 10 108 1.66e-29 115
MS.gene60016.t1 AT5G09620 52.174 115 48 3 58 169 39 149 2.74e-29 119
MS.gene60016.t1 AT5G09620 52.174 115 48 3 58 169 39 149 3.53e-29 119
MS.gene60016.t1 AT5G64430 45.890 146 67 4 58 199 44 181 7.73e-28 115
MS.gene60016.t1 AT5G57610 44.203 138 69 4 58 194 23 153 5.02e-27 114
MS.gene60016.t1 AT5G16220 36.723 177 74 3 57 198 29 202 3.43e-25 107
MS.gene60016.t1 AT5G49920 34.615 208 112 7 58 257 9 200 1.19e-24 102
MS.gene60016.t1 AT1G79570 32.231 242 133 8 58 294 176 391 4.19e-24 105
MS.gene60016.t1 AT1G79570 32.231 242 133 8 58 294 176 391 4.19e-24 105
MS.gene60016.t1 AT1G79570 36.196 163 91 3 58 214 176 331 4.22e-24 105
MS.gene60016.t1 AT1G79570 32.231 242 133 8 58 294 176 391 5.12e-24 105
MS.gene60016.t1 AT1G79570 32.231 242 133 8 58 294 176 391 5.12e-24 105
MS.gene60016.t1 AT1G16270 35.976 164 92 3 57 214 163 319 8.44e-24 104
MS.gene60016.t1 AT1G16270 35.976 164 92 3 57 214 163 319 8.44e-24 104
MS.gene60016.t1 AT1G16270 35.976 164 92 3 57 214 163 319 8.44e-24 104
MS.gene60016.t1 AT3G46920 37.500 160 90 4 58 214 74 226 5.17e-23 102
MS.gene60016.t1 AT3G46920 37.500 160 90 4 58 214 8 160 6.79e-23 101
MS.gene60016.t1 AT3G26510 46.789 109 49 3 59 164 10 112 3.56e-22 93.6
MS.gene60016.t1 AT3G26510 46.789 109 49 3 59 164 10 112 3.56e-22 93.6
MS.gene60016.t1 AT3G26510 46.789 109 49 3 59 164 10 112 3.56e-22 93.6
MS.gene60016.t1 AT3G26510 46.789 109 49 3 59 164 10 112 3.56e-22 93.6
MS.gene60016.t1 AT3G26510 46.789 109 49 3 59 164 10 112 3.56e-22 93.6
MS.gene60016.t1 AT3G26510 46.789 109 49 3 59 164 10 112 3.56e-22 93.6
MS.gene60016.t1 AT1G04700 43.307 127 61 3 38 164 105 220 6.91e-22 98.6
MS.gene60016.t1 AT1G04700 43.307 127 61 3 38 164 105 220 6.91e-22 98.6
MS.gene60016.t1 AT1G04700 43.307 127 61 3 38 164 105 220 7.67e-22 98.6
MS.gene60016.t1 AT2G35050 38.235 136 76 3 58 193 176 303 1.26e-21 97.8
MS.gene60016.t1 AT2G35050 38.235 136 76 3 58 193 176 303 1.26e-21 97.8
MS.gene60016.t1 AT3G48240 51.136 88 41 1 59 146 14 99 3.62e-20 87.8
MS.gene60016.t1 AT3G24715 35.976 164 87 7 58 216 175 325 3.66e-20 93.6
MS.gene60016.t1 AT3G24715 35.976 164 87 7 58 216 175 325 3.66e-20 93.6
MS.gene60016.t1 AT3G24715 35.976 164 87 7 58 216 175 325 3.66e-20 93.6
MS.gene60016.t1 AT1G70640 43.925 107 50 3 59 164 8 105 3.75e-18 82.0
MS.gene60016.t1 AT5G63130 48.936 94 46 1 56 149 12 103 1.05e-15 75.5
MS.gene60016.t1 AT5G63130 48.936 94 46 1 56 149 12 103 1.05e-15 75.5

Find 84 sgRNAs with CRISPR-Local

Find 90 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAGATTATGGAGGACAAAT+TGG 0.296055 6.1:+72631677 MS.gene60016:CDS
AGCTTGCCACCGGGGACATT+AGG 0.326160 6.1:-72630792 None:intergenic
GGTTGCGGCGGTGGAGATAA+GGG 0.328130 6.1:-72630649 None:intergenic
GCGATCCACGACCACGATTC+TGG 0.330991 6.1:-72630892 None:intergenic
GATGATGAGAGATCAGATTA+TGG 0.354406 6.1:+72631665 MS.gene60016:CDS
CCATACCTTGTAACTGAATC+TGG 0.358887 6.1:-72631770 None:intergenic
AGGAATGGTGGTTGCGGCGG+TGG 0.359388 6.1:-72630658 None:intergenic
CCCATTGAAAGTGTGGTATC+TGG 0.360704 6.1:-72631143 None:intergenic
GCTTGAAAACAACAACAATA+AGG 0.375409 6.1:+72631340 MS.gene60016:CDS
TTCATCTTTGACTCCTTCAA+TGG 0.381472 6.1:+72631439 MS.gene60016:CDS
ACCAGATACCACACTTTCAA+TGG 0.385542 6.1:+72631142 MS.gene60016:CDS
TGGTTGCGGCGGTGGAGATA+AGG 0.395600 6.1:-72630650 None:intergenic
GCTTGCCACCGGGGACATTA+GGG 0.400464 6.1:-72630791 None:intergenic
CGTGGTGGTGGCTGTGGTGG+TGG 0.411827 6.1:-72630732 None:intergenic
TTCTTCTGCTAATGTGGCTA+TGG 0.422627 6.1:+72631562 MS.gene60016:CDS
CTTTCGAGAACAATTCTTAA+CGG 0.437708 6.1:+72630945 MS.gene60016:CDS
CCAGATTCAGTTACAAGGTA+TGG 0.439241 6.1:+72631770 MS.gene60016:CDS
GTGGTGATGTTAATGTGAAT+AGG 0.439737 6.1:+72631633 MS.gene60016:CDS
ACTCTTAATCTTGATGATGA+AGG 0.448004 6.1:-72631101 None:intergenic
GTTGCGGCGGTGGAGATAAG+GGG 0.466311 6.1:-72630648 None:intergenic
CTTCACCAGATTCAGTTACA+AGG 0.472765 6.1:+72631765 MS.gene60016:CDS
TGGTGATGTTAATGTGAATA+GGG 0.479523 6.1:+72631634 MS.gene60016:CDS
TTGGATGATGTTAGGAGGAA+TGG 0.492279 6.1:-72630673 None:intergenic
CTGTGGTGGTGGCGATGATA+AGG 0.492297 6.1:-72630721 None:intergenic
TCATCAACACAAACACGAAT+CGG 0.493359 6.1:-72631473 None:intergenic
GATAAGGACTCGATCGACTC+AGG 0.496681 6.1:-72630705 None:intergenic
CATCTGATGTTACTGTAATG+AGG 0.497110 6.1:-72631016 None:intergenic
GAAGCCATTGTCATTGCTGC+AGG 0.505850 6.1:-72631593 None:intergenic
CATGAGACGAAGCTTGCCAC+CGG 0.506663 6.1:-72630802 None:intergenic
CCAGATACCACACTTTCAAT+GGG 0.510170 6.1:+72631143 MS.gene60016:CDS
TGTTGTTTCTTCTGCTAATG+TGG 0.511399 6.1:+72631556 MS.gene60016:CDS
CTTCGTCTCATGTGCAGCTA+CGG 0.512697 6.1:+72630813 MS.gene60016:CDS
GATAAGTCTCTATGTTATGT+AGG 0.513509 6.1:+72630861 MS.gene60016:CDS
TGACACCAGAATCGTGGTCG+TGG 0.514574 6.1:+72630887 MS.gene60016:CDS
TTCTCGAAAGGCGCGAACAT+AGG 0.519863 6.1:-72630932 None:intergenic
GCAATGACAATGGCTTCAGC+TGG 0.523790 6.1:+72631599 MS.gene60016:CDS
CTCACACCACCACTAGTCCT+TGG 0.525251 6.1:-72631737 None:intergenic
CGTCTCATGTGCAGCTACGG+AGG 0.527353 6.1:+72630816 MS.gene60016:CDS
GGTGGCAAATTCTCCATTGA+AGG 0.528503 6.1:-72631452 None:intergenic
AGAGGTGTGTCAGATTCAGC+AGG 0.528641 6.1:+72631236 MS.gene60016:CDS
CGTTAAGAATTGTTCTCGAA+AGG 0.533418 6.1:-72630944 None:intergenic
TGTGATCGTGGTGGTGGCTG+TGG 0.535147 6.1:-72630738 None:intergenic
TGAACAAGCTGCAATGGTAA+AGG 0.535312 6.1:-72631713 None:intergenic
ATGAGACGAAGCTTGCCACC+GGG 0.542054 6.1:-72630801 None:intergenic
GATCGTGGTGGTGGCTGTGG+TGG 0.546440 6.1:-72630735 None:intergenic
TTATTGCTTGAATCACTAGC+AGG 0.547203 6.1:-72631287 None:intergenic
CAAGATCTTCACGAGGAAGC+TGG 0.547959 6.1:-72630989 None:intergenic
TAGTGATTCAAGCAATAACT+TGG 0.550481 6.1:+72631292 MS.gene60016:CDS
GTTGATGCACTCAACAACTC+AGG 0.551095 6.1:+72631203 MS.gene60016:CDS
AGGAGGAATGGTGGTTGCGG+CGG 0.553526 6.1:-72630661 None:intergenic
GTTAGGAGGAATGGTGGTTG+CGG 0.554956 6.1:-72630664 None:intergenic
TCAGCTGGAGTTGTTACTAG+TGG 0.557237 6.1:+72631614 MS.gene60016:CDS
TTAACATGTGATCGTGGTGG+TGG 0.560719 6.1:-72630744 None:intergenic
TTGATGCACTCAACAACTCA+GGG 0.562066 6.1:+72631204 MS.gene60016:CDS
GTCTCATGTGCAGCTACGGA+GGG 0.562228 6.1:+72630817 MS.gene60016:CDS
CTTGGTTGAACAAGCTGCAA+TGG 0.570036 6.1:-72631719 None:intergenic
TTGATGAAAATGCTGGTAGC+AGG 0.570446 6.1:+72631489 MS.gene60016:CDS
GTTTGTGTTGATGAAAATGC+TGG 0.571146 6.1:+72631482 MS.gene60016:CDS
GACTCCTTCCCTAATGTCCC+CGG 0.573625 6.1:+72630783 MS.gene60016:CDS
CTTGTAACTGAATCTGGTGA+AGG 0.582351 6.1:-72631764 None:intergenic
CTTGTTCAACCAAGGACTAG+TGG 0.587169 6.1:+72631728 MS.gene60016:CDS
AAAGTTGTAATGAAGCAAGA+TGG 0.595849 6.1:+72631527 MS.gene60016:CDS
AAGTGATCCCATTGAAAGTG+TGG 0.597227 6.1:-72631150 None:intergenic
GCGGCGGTGGAGATAAGGGG+TGG 0.603325 6.1:-72630645 None:intergenic
CATTGCAGCTTGTTCAACCA+AGG 0.622441 6.1:+72631720 MS.gene60016:CDS
AACTCAGGGATTCTCTCAAG+AGG 0.622550 6.1:+72631218 MS.gene60016:CDS
AATTCCTGCAGCAATGACAA+TGG 0.625152 6.1:+72631589 MS.gene60016:CDS
GATGATGTTAGGAGGAATGG+TGG 0.629860 6.1:-72630670 None:intergenic
AAGCTGGTACTTGAGAGTAA+AGG 0.631638 6.1:-72630973 None:intergenic
GTTTCATTAACATGTGATCG+TGG 0.649887 6.1:-72630750 None:intergenic
TCAACACAAACACGAATCGG+TGG 0.651252 6.1:-72631470 None:intergenic
GCCACCGGGGACATTAGGGA+AGG 0.653433 6.1:-72630787 None:intergenic
ACAAGCTGCAATGGTAAAGG+CGG 0.660310 6.1:-72631710 None:intergenic
TAACATAGAGACTTATCATG+AGG 0.662427 6.1:-72630855 None:intergenic
ATGATGCAAAATCTGAGACA+TGG 0.663147 6.1:+72631177 MS.gene60016:CDS
GATGAGAGATCAGATTATGG+AGG 0.672016 6.1:+72631668 MS.gene60016:CDS
AAGTCTCTATGTTATGTAGG+CGG 0.674337 6.1:+72630864 MS.gene60016:CDS
GTTCAACCAAGGACTAGTGG+TGG 0.681531 6.1:+72631731 MS.gene60016:CDS
AGGCGGTGACACCAGAATCG+TGG 0.682815 6.1:+72630881 MS.gene60016:CDS
TCCTTCCCTAATGTCCCCGG+TGG 0.690061 6.1:+72630786 MS.gene60016:CDS
AGAGACTTATCATGAGGACG+CGG 0.691797 6.1:-72630849 None:intergenic
TGAGACGAAGCTTGCCACCG+GGG 0.695282 6.1:-72630800 None:intergenic
TCATTAACATGTGATCGTGG+TGG 0.712353 6.1:-72630747 None:intergenic
AGGTTATCAAGATCTTCACG+AGG 0.763857 6.1:-72630996 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
AAAGTTGTAATGAAGCAAGA+TGG + chr6.1:72631527-72631546 MS.gene60016:CDS 30.0%
CTTTCGAGAACAATTCTTAA+CGG + chr6.1:72630945-72630964 MS.gene60016:CDS 30.0%
GATAAGTCTCTATGTTATGT+AGG + chr6.1:72630861-72630880 MS.gene60016:CDS 30.0%
GCTTGAAAACAACAACAATA+AGG + chr6.1:72631340-72631359 MS.gene60016:CDS 30.0%
TAACATAGAGACTTATCATG+AGG - chr6.1:72630858-72630877 None:intergenic 30.0%
TAGTGATTCAAGCAATAACT+TGG + chr6.1:72631292-72631311 MS.gene60016:CDS 30.0%
! TGGTGATGTTAATGTGAATA+GGG + chr6.1:72631634-72631653 MS.gene60016:CDS 30.0%
!! ACTCTTAATCTTGATGATGA+AGG - chr6.1:72631104-72631123 None:intergenic 30.0%
!! GATAAACTGTTTTCTAGCAT+AGG - chr6.1:72631416-72631435 None:intergenic 30.0%
!! TTTTCTAGCATAGGTGAATT+AGG - chr6.1:72631407-72631426 None:intergenic 30.0%
!!! TAGTTTTGTTGGATGATGTT+AGG - chr6.1:72630684-72630703 None:intergenic 30.0%
AAGTCTCTATGTTATGTAGG+CGG + chr6.1:72630864-72630883 MS.gene60016:CDS 35.0%
CATCTGATGTTACTGTAATG+AGG - chr6.1:72631019-72631038 None:intergenic 35.0%
CGTTAAGAATTGTTCTCGAA+AGG - chr6.1:72630947-72630966 None:intergenic 35.0%
GATGATGAGAGATCAGATTA+TGG + chr6.1:72631665-72631684 MS.gene60016:CDS 35.0%
GTTTCATTAACATGTGATCG+TGG - chr6.1:72630753-72630772 None:intergenic 35.0%
TCAGATTATGGAGGACAAAT+TGG + chr6.1:72631677-72631696 MS.gene60016:CDS 35.0%
TCATCAACACAAACACGAAT+CGG - chr6.1:72631476-72631495 None:intergenic 35.0%
TTATTGCTTGAATCACTAGC+AGG - chr6.1:72631290-72631309 None:intergenic 35.0%
TTCATCTTTGACTCCTTCAA+TGG + chr6.1:72631439-72631458 MS.gene60016:CDS 35.0%
! ATGATGCAAAATCTGAGACA+TGG + chr6.1:72631177-72631196 MS.gene60016:CDS 35.0%
! GTGGTGATGTTAATGTGAAT+AGG + chr6.1:72631633-72631652 MS.gene60016:CDS 35.0%
! GTGTAACATTGCTCTCTTTT+TGG + chr6.1:72631802-72631821 MS.gene60016:CDS 35.0%
! GTTTGTGTTGATGAAAATGC+TGG + chr6.1:72631482-72631501 MS.gene60016:CDS 35.0%
! TTTTGTTGGATGATGTTAGG+AGG - chr6.1:72630681-72630700 None:intergenic 35.0%
!! TGTTGTTTCTTCTGCTAATG+TGG + chr6.1:72631556-72631575 MS.gene60016:CDS 35.0%
AAGCTGGTACTTGAGAGTAA+AGG - chr6.1:72630976-72630995 None:intergenic 40.0%
AAGTGATCCCATTGAAAGTG+TGG - chr6.1:72631153-72631172 None:intergenic 40.0%
AATTCCTGCAGCAATGACAA+TGG + chr6.1:72631589-72631608 MS.gene60016:CDS 40.0%
ACCAGATACCACACTTTCAA+TGG + chr6.1:72631142-72631161 MS.gene60016:CDS 40.0%
AGGTTATCAAGATCTTCACG+AGG - chr6.1:72630999-72631018 None:intergenic 40.0%
CCAGATACCACACTTTCAAT+GGG + chr6.1:72631143-72631162 MS.gene60016:CDS 40.0%
CCAGATTCAGTTACAAGGTA+TGG + chr6.1:72631770-72631789 MS.gene60016:CDS 40.0%
CCATACCTTGTAACTGAATC+TGG - chr6.1:72631773-72631792 None:intergenic 40.0%
CTTCACCAGATTCAGTTACA+AGG + chr6.1:72631765-72631784 MS.gene60016:CDS 40.0%
CTTGTAACTGAATCTGGTGA+AGG - chr6.1:72631767-72631786 None:intergenic 40.0%
GATGAGAGATCAGATTATGG+AGG + chr6.1:72631668-72631687 MS.gene60016:CDS 40.0%
TCATTAACATGTGATCGTGG+TGG - chr6.1:72630750-72630769 None:intergenic 40.0%
TGAACAAGCTGCAATGGTAA+AGG - chr6.1:72631716-72631735 None:intergenic 40.0%
TTCTTCTGCTAATGTGGCTA+TGG + chr6.1:72631562-72631581 MS.gene60016:CDS 40.0%
TTGATGAAAATGCTGGTAGC+AGG + chr6.1:72631489-72631508 MS.gene60016:CDS 40.0%
TTGATGCACTCAACAACTCA+GGG + chr6.1:72631204-72631223 MS.gene60016:CDS 40.0%
TTGGATGATGTTAGGAGGAA+TGG - chr6.1:72630676-72630695 None:intergenic 40.0%
!!! TCGACTCAGGATAGTTTTGT+TGG - chr6.1:72630695-72630714 None:intergenic 40.0%
AACTCAGGGATTCTCTCAAG+AGG + chr6.1:72631218-72631237 MS.gene60016:CDS 45.0%
ACAAGCTGCAATGGTAAAGG+CGG - chr6.1:72631713-72631732 None:intergenic 45.0%
AGAGACTTATCATGAGGACG+CGG - chr6.1:72630852-72630871 None:intergenic 45.0%
CTTGGTTGAACAAGCTGCAA+TGG - chr6.1:72631722-72631741 None:intergenic 45.0%
CTTGTTCAACCAAGGACTAG+TGG + chr6.1:72631728-72631747 MS.gene60016:CDS 45.0%
GATGATGTTAGGAGGAATGG+TGG - chr6.1:72630673-72630692 None:intergenic 45.0%
GGTGGCAAATTCTCCATTGA+AGG - chr6.1:72631455-72631474 None:intergenic 45.0%
GTTGATGCACTCAACAACTC+AGG + chr6.1:72631203-72631222 MS.gene60016:CDS 45.0%
TCAACACAAACACGAATCGG+TGG - chr6.1:72631473-72631492 None:intergenic 45.0%
TCAGCTGGAGTTGTTACTAG+TGG + chr6.1:72631614-72631633 MS.gene60016:CDS 45.0%
TTAACATGTGATCGTGGTGG+TGG - chr6.1:72630747-72630766 None:intergenic 45.0%
! CATTGCAGCTTGTTCAACCA+AGG + chr6.1:72631720-72631739 MS.gene60016:CDS 45.0%
! CCCATTGAAAGTGTGGTATC+TGG - chr6.1:72631146-72631165 None:intergenic 45.0%
CAAGATCTTCACGAGGAAGC+TGG - chr6.1:72630992-72631011 None:intergenic 50.0%
CTTCGTCTCATGTGCAGCTA+CGG + chr6.1:72630813-72630832 MS.gene60016:CDS 50.0%
GAAGCCATTGTCATTGCTGC+AGG - chr6.1:72631596-72631615 None:intergenic 50.0%
GCAATGACAATGGCTTCAGC+TGG + chr6.1:72631599-72631618 MS.gene60016:CDS 50.0%
GTTAGGAGGAATGGTGGTTG+CGG - chr6.1:72630667-72630686 None:intergenic 50.0%
! AGAGGTGTGTCAGATTCAGC+AGG + chr6.1:72631236-72631255 MS.gene60016:CDS 50.0%
! GATAAGGACTCGATCGACTC+AGG - chr6.1:72630708-72630727 None:intergenic 50.0%
! GTTCAACCAAGGACTAGTGG+TGG + chr6.1:72631731-72631750 MS.gene60016:CDS 50.0%
! TTCTCGAAAGGCGCGAACAT+AGG - chr6.1:72630935-72630954 None:intergenic 50.0%
ATGAGACGAAGCTTGCCACC+GGG - chr6.1:72630804-72630823 None:intergenic 55.0%
CATGAGACGAAGCTTGCCAC+CGG - chr6.1:72630805-72630824 None:intergenic 55.0%
CTCACACCACCACTAGTCCT+TGG - chr6.1:72631740-72631759 None:intergenic 55.0%
GACTCCTTCCCTAATGTCCC+CGG + chr6.1:72630783-72630802 MS.gene60016:CDS 55.0%
GTCTCATGTGCAGCTACGGA+GGG + chr6.1:72630817-72630836 MS.gene60016:CDS 55.0%
TGACACCAGAATCGTGGTCG+TGG + chr6.1:72630887-72630906 MS.gene60016:CDS 55.0%
!! CTGTGGTGGTGGCGATGATA+AGG - chr6.1:72630724-72630743 None:intergenic 55.0%
AGCTTGCCACCGGGGACATT+AGG - chr6.1:72630795-72630814 None:intergenic 60.0%
AGGAGGAATGGTGGTTGCGG+CGG - chr6.1:72630664-72630683 None:intergenic 60.0%
AGGCGGTGACACCAGAATCG+TGG + chr6.1:72630881-72630900 MS.gene60016:CDS 60.0%
CGTCTCATGTGCAGCTACGG+AGG + chr6.1:72630816-72630835 MS.gene60016:CDS 60.0%
GCGATCCACGACCACGATTC+TGG - chr6.1:72630895-72630914 None:intergenic 60.0%
GCTTGCCACCGGGGACATTA+GGG - chr6.1:72630794-72630813 None:intergenic 60.0%
GGTTGCGGCGGTGGAGATAA+GGG - chr6.1:72630652-72630671 None:intergenic 60.0%
GTTGCGGCGGTGGAGATAAG+GGG - chr6.1:72630651-72630670 None:intergenic 60.0%
TCCTTCCCTAATGTCCCCGG+TGG + chr6.1:72630786-72630805 MS.gene60016:CDS 60.0%
TGAGACGAAGCTTGCCACCG+GGG - chr6.1:72630803-72630822 None:intergenic 60.0%
TGGTTGCGGCGGTGGAGATA+AGG - chr6.1:72630653-72630672 None:intergenic 60.0%
!! TGTGATCGTGGTGGTGGCTG+TGG - chr6.1:72630741-72630760 None:intergenic 60.0%
AGGAATGGTGGTTGCGGCGG+TGG - chr6.1:72630661-72630680 None:intergenic 65.0%
GCCACCGGGGACATTAGGGA+AGG - chr6.1:72630790-72630809 None:intergenic 65.0%
!! GATCGTGGTGGTGGCTGTGG+TGG - chr6.1:72630738-72630757 None:intergenic 65.0%
GCGGCGGTGGAGATAAGGGG+TGG - chr6.1:72630648-72630667 None:intergenic 70.0%
!! CGTGGTGGTGGCTGTGGTGG+TGG - chr6.1:72630735-72630754 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 72630639 72631844 72630639 ID=MS.gene60016
chr6.1 mRNA 72630639 72631844 72630639 ID=MS.gene60016.t1;Parent=MS.gene60016
chr6.1 exon 72630639 72631844 72630639 ID=MS.gene60016.t1.exon1;Parent=MS.gene60016.t1
chr6.1 CDS 72630639 72631844 72630639 ID=cds.MS.gene60016.t1;Parent=MS.gene60016.t1
Gene Sequence

>MS.gene60016

ATGGATCCACCCCTTATCTCCACCGCCGCAACCACCATTCCTCCTAACATCATCCAACAAAACTATCCTGAGTCGATCGAGTCCTTATCATCGCCACCACCACAGCCACCACCACGATCACATGTTAATGAAACAATGAACGACGACTCCTTCCCTAATGTCCCCGGTGGCAAGCTTCGTCTCATGTGCAGCTACGGAGGGCACATAATGCCGCGTCCTCATGATAAGTCTCTATGTTATGTAGGCGGTGACACCAGAATCGTGGTCGTGGATCGCAGTTCTTCTCTGAAAGACCTATGTTCGCGCCTTTCGAGAACAATTCTTAACGGAAGATCCTTTACTCTCAAGTACCAGCTTCCTCGTGAAGATCTTGATAACCTCATTACAGTAACATCAGATGAAGATCTTGATAACATGATTGAAGAATATGATCGTATAGCATCTGCATCTTCTACAATGAAACCTTCATCATCAAGATTAAGAGTGTTTTTGTTCTTCACAAAACCAGATACCACACTTTCAATGGGATCACTTCTTGATGATGCAAAATCTGAGACATGGTTTGTTGATGCACTCAACAACTCAGGGATTCTCTCAAGAGGTGTGTCAGATTCAGCAGGAGATTCTTTTGTGAATCTTGATAATGTTCCTGCTAGTGATTCAAGCAATAACTTGGAATCTCAAGTAGAATCATTGTCTCTGCTTGAAAACAACAACAATAAGGTTAAGAATGTGTTTGATAATGTTAATGCTGTGAATTCAACACCTAATTCACCTATGCTAGAAAACAGTTTATCATCTTCATCTTTGACTCCTTCAATGGAGAATTTGCCACCGATTCGTGTTTGTGTTGATGAAAATGCTGGTAGCAGGCTTCAACAAGAGAACAAAGTTGTAATGAAGCAAGATGGTGAGTTTGTTGTTTCTTCTGCTAATGTGGCTATGGCTGCAATTCCTGCAGCAATGACAATGGCTTCAGCTGGAGTTGTTACTAGTGGTGATGTTAATGTGAATAGGGTTGTTTCTGATGATGAGAGATCAGATTATGGAGGACAAATTGGATCTCGAAAACCGCCTTTACCATTGCAGCTTGTTCAACCAAGGACTAGTGGTGGTGTGAGTCTTCCTTCACCAGATTCAGTTACAAGGTATGGTTATGCTTTGTGTAACATTGCTCTCTTTTTGGTTCTTTTTTTCACGTCATAA
Protein sequence

>MS.gene60016.t1

MDPPLISTAATTIPPNIIQQNYPESIESLSSPPPQPPPRSHVNETMNDDSFPNVPGGKLRLMCSYGGHIMPRPHDKSLCYVGGDTRIVVVDRSSSLKDLCSRLSRTILNGRSFTLKYQLPREDLDNLITVTSDEDLDNMIEEYDRIASASSTMKPSSSRLRVFLFFTKPDTTLSMGSLLDDAKSETWFVDALNNSGILSRGVSDSAGDSFVNLDNVPASDSSNNLESQVESLSLLENNNNKVKNVFDNVNAVNSTPNSPMLENSLSSSSLTPSMENLPPIRVCVDENAGSRLQQENKVVMKQDGEFVVSSANVAMAAIPAAMTMASAGVVTSGDVNVNRVVSDDERSDYGGQIGSRKPPLPLQLVQPRTSGGVSLPSPDSVTRYGYALCNIALFLVLFFTS