Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60039.t1 | XP_003604394.1 | 96.6 | 205 | 7 | 0 | 1 | 205 | 1 | 205 | 7.80E-105 | 389.8 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60039.t1 | O04011 | 52.9 | 208 | 94 | 4 | 1 | 204 | 6 | 213 | 2.7e-50 | 199.9 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60039.t1 | G7JGZ8 | 96.6 | 205 | 7 | 0 | 1 | 205 | 1 | 205 | 5.6e-105 | 389.8 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene054799 | MS.gene60039 | 0.811011 | 8.67E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60039.t1 | MTR_4g010340 | 96.585 | 205 | 7 | 0 | 1 | 205 | 1 | 205 | 1.09e-142 | 396 |
| MS.gene60039.t1 | MTR_8g020760 | 71.770 | 209 | 55 | 2 | 1 | 205 | 3 | 211 | 1.56e-100 | 290 |
| MS.gene60039.t1 | MTR_8g020763 | 75.275 | 182 | 43 | 2 | 26 | 205 | 9 | 190 | 4.36e-93 | 270 |
| MS.gene60039.t1 | MTR_2g019780 | 65.728 | 213 | 62 | 5 | 1 | 205 | 3 | 212 | 1.30e-86 | 254 |
| MS.gene60039.t1 | MTR_8g020630 | 61.538 | 208 | 76 | 3 | 1 | 205 | 3 | 209 | 4.81e-86 | 253 |
| MS.gene60039.t1 | MTR_8g020670 | 61.765 | 204 | 75 | 2 | 5 | 205 | 6 | 209 | 1.98e-84 | 249 |
| MS.gene60039.t1 | MTR_3g073170 | 64.929 | 211 | 65 | 4 | 1 | 205 | 3 | 210 | 2.21e-84 | 249 |
| MS.gene60039.t1 | MTR_8g020650 | 63.636 | 187 | 67 | 1 | 20 | 205 | 23 | 209 | 3.86e-84 | 248 |
| MS.gene60039.t1 | MTR_2g045100 | 61.353 | 207 | 77 | 2 | 2 | 205 | 3 | 209 | 2.59e-81 | 241 |
| MS.gene60039.t1 | MTR_2g044040 | 59.135 | 208 | 81 | 3 | 1 | 205 | 3 | 209 | 7.72e-81 | 239 |
| MS.gene60039.t1 | MTR_8g020770 | 58.768 | 211 | 80 | 4 | 1 | 205 | 3 | 212 | 3.78e-79 | 236 |
| MS.gene60039.t1 | MTR_2g036120 | 57.971 | 207 | 83 | 3 | 1 | 204 | 3 | 208 | 3.31e-76 | 228 |
| MS.gene60039.t1 | MTR_8g020750 | 58.571 | 210 | 82 | 4 | 1 | 205 | 3 | 212 | 1.50e-75 | 226 |
| MS.gene60039.t1 | MTR_3g019710 | 55.882 | 204 | 87 | 2 | 5 | 205 | 6 | 209 | 8.14e-75 | 224 |
| MS.gene60039.t1 | MTR_0284s0010 | 56.250 | 208 | 87 | 3 | 1 | 205 | 3 | 209 | 1.77e-74 | 224 |
| MS.gene60039.t1 | MTR_7g011340 | 58.421 | 190 | 78 | 1 | 17 | 205 | 20 | 209 | 5.63e-74 | 222 |
| MS.gene60039.t1 | MTR_3g019680 | 54.589 | 207 | 90 | 3 | 2 | 205 | 3 | 208 | 5.90e-72 | 217 |
| MS.gene60039.t1 | MTR_3g019650 | 54.106 | 207 | 91 | 3 | 2 | 205 | 3 | 208 | 1.80e-71 | 216 |
| MS.gene60039.t1 | MTR_5g031460 | 53.846 | 208 | 92 | 3 | 1 | 205 | 3 | 209 | 1.88e-69 | 211 |
| MS.gene60039.t1 | MTR_8g020610 | 52.913 | 206 | 90 | 5 | 5 | 205 | 4 | 207 | 9.68e-67 | 204 |
| MS.gene60039.t1 | MTR_8g020590 | 50.000 | 208 | 101 | 3 | 1 | 205 | 1 | 208 | 4.02e-63 | 195 |
| MS.gene60039.t1 | MTR_2g041550 | 49.038 | 208 | 103 | 3 | 1 | 205 | 3 | 210 | 8.64e-61 | 189 |
| MS.gene60039.t1 | MTR_2g041570 | 47.115 | 208 | 107 | 3 | 1 | 205 | 3 | 210 | 3.69e-58 | 182 |
| MS.gene60039.t1 | MTR_2g041580 | 47.115 | 208 | 107 | 3 | 1 | 205 | 3 | 210 | 1.03e-57 | 181 |
| MS.gene60039.t1 | MTR_3g019810 | 51.269 | 197 | 87 | 3 | 5 | 198 | 112 | 302 | 2.64e-56 | 181 |
| MS.gene60039.t1 | MTR_4g027415 | 57.724 | 123 | 51 | 1 | 17 | 138 | 20 | 142 | 6.23e-41 | 136 |
| MS.gene60039.t1 | MTR_1g085140 | 40.816 | 196 | 107 | 5 | 13 | 201 | 22 | 215 | 2.23e-34 | 122 |
| MS.gene60039.t1 | MTR_1g079490 | 37.173 | 191 | 111 | 4 | 20 | 201 | 27 | 217 | 3.20e-32 | 116 |
| MS.gene60039.t1 | MTR_1g085500 | 37.143 | 210 | 116 | 7 | 4 | 200 | 7 | 213 | 4.36e-32 | 115 |
| MS.gene60039.t1 | MTR_6g005330 | 38.426 | 216 | 117 | 7 | 1 | 201 | 1 | 215 | 7.89e-32 | 115 |
| MS.gene60039.t1 | MTR_6g005310 | 38.889 | 216 | 116 | 7 | 1 | 201 | 1 | 215 | 9.47e-32 | 115 |
| MS.gene60039.t1 | MTR_6g005360 | 40.805 | 174 | 96 | 4 | 34 | 201 | 43 | 215 | 1.19e-31 | 114 |
| MS.gene60039.t1 | MTR_1g060120 | 32.500 | 200 | 126 | 3 | 12 | 202 | 23 | 222 | 1.47e-31 | 114 |
| MS.gene60039.t1 | MTR_7g111240 | 39.037 | 187 | 109 | 4 | 20 | 201 | 25 | 211 | 3.61e-31 | 113 |
| MS.gene60039.t1 | MTR_7g111240 | 39.572 | 187 | 105 | 5 | 20 | 201 | 25 | 208 | 4.87e-31 | 113 |
| MS.gene60039.t1 | MTR_6g005340 | 38.426 | 216 | 117 | 7 | 1 | 201 | 1 | 215 | 6.36e-31 | 113 |
| MS.gene60039.t1 | MTR_2g031270 | 37.566 | 189 | 108 | 5 | 20 | 201 | 28 | 213 | 9.95e-31 | 112 |
| MS.gene60039.t1 | MTR_2g072560 | 56.364 | 110 | 45 | 2 | 5 | 111 | 6 | 115 | 2.73e-30 | 109 |
| MS.gene60039.t1 | MTR_1g112200 | 33.166 | 199 | 127 | 3 | 5 | 201 | 13 | 207 | 1.38e-29 | 109 |
| MS.gene60039.t1 | MTR_2g030855 | 39.011 | 182 | 100 | 5 | 20 | 196 | 27 | 202 | 4.46e-29 | 108 |
| MS.gene60039.t1 | MTR_1g023770 | 38.596 | 171 | 98 | 4 | 38 | 201 | 39 | 209 | 5.96e-29 | 107 |
| MS.gene60039.t1 | MTR_3g019610 | 56.383 | 94 | 40 | 1 | 8 | 101 | 12 | 104 | 3.13e-28 | 102 |
| MS.gene60039.t1 | MTR_4g017040 | 38.506 | 174 | 99 | 4 | 34 | 200 | 43 | 215 | 1.40e-26 | 101 |
| MS.gene60039.t1 | MTR_4g017050 | 35.945 | 217 | 118 | 7 | 1 | 200 | 3 | 215 | 4.96e-26 | 100 |
| MS.gene60039.t1 | MTR_5g046410 | 35.945 | 217 | 118 | 7 | 1 | 200 | 3 | 215 | 5.12e-26 | 100 |
| MS.gene60039.t1 | MTR_5g046430 | 35.945 | 217 | 118 | 7 | 1 | 200 | 3 | 215 | 5.12e-26 | 100 |
| MS.gene60039.t1 | MTR_4g017030 | 35.945 | 217 | 118 | 7 | 1 | 200 | 3 | 215 | 5.12e-26 | 100 |
| MS.gene60039.t1 | MTR_2g019250 | 38.506 | 174 | 99 | 4 | 34 | 200 | 43 | 215 | 7.66e-26 | 99.8 |
| MS.gene60039.t1 | MTR_8g007300 | 35.673 | 171 | 96 | 6 | 6 | 164 | 11 | 179 | 1.51e-25 | 99.0 |
| MS.gene60039.t1 | MTR_2g030895 | 36.628 | 172 | 101 | 5 | 38 | 201 | 7 | 178 | 2.56e-25 | 97.4 |
| MS.gene60039.t1 | MTR_6g005380 | 40.782 | 179 | 89 | 6 | 1 | 164 | 1 | 177 | 8.66e-25 | 96.7 |
| MS.gene60039.t1 | MTR_5g036570 | 33.511 | 188 | 111 | 5 | 20 | 203 | 32 | 209 | 3.81e-24 | 95.5 |
| MS.gene60039.t1 | MTR_2g030865 | 36.628 | 172 | 101 | 5 | 38 | 201 | 7 | 178 | 1.27e-23 | 92.8 |
| MS.gene60039.t1 | MTR_3g096330 | 33.714 | 175 | 103 | 4 | 3 | 164 | 556 | 730 | 2.91e-23 | 97.1 |
| MS.gene60039.t1 | MTR_6g005350 | 32.558 | 215 | 129 | 6 | 2 | 201 | 1 | 214 | 1.38e-21 | 88.6 |
| MS.gene60039.t1 | MTR_2g086630 | 34.444 | 180 | 109 | 5 | 30 | 202 | 28 | 205 | 5.98e-21 | 86.7 |
| MS.gene60039.t1 | MTR_2g031300 | 45.283 | 106 | 53 | 3 | 38 | 138 | 7 | 112 | 1.93e-20 | 84.0 |
| MS.gene60039.t1 | MTR_2g086620 | 33.014 | 209 | 121 | 7 | 1 | 202 | 9 | 205 | 2.72e-20 | 85.1 |
| MS.gene60039.t1 | MTR_2g086640 | 32.402 | 179 | 114 | 5 | 30 | 202 | 27 | 204 | 1.53e-19 | 82.8 |
| MS.gene60039.t1 | MTR_2g096110 | 38.816 | 152 | 68 | 6 | 43 | 190 | 8 | 138 | 3.97e-19 | 80.1 |
| MS.gene60039.t1 | MTR_4g052770 | 36.585 | 164 | 98 | 4 | 44 | 201 | 42 | 205 | 2.18e-18 | 79.7 |
| MS.gene60039.t1 | MTR_4g052780 | 36.585 | 164 | 98 | 4 | 44 | 201 | 42 | 205 | 4.29e-18 | 79.0 |
| MS.gene60039.t1 | MTR_7g029500 | 68.333 | 60 | 15 | 1 | 146 | 205 | 38 | 93 | 3.49e-17 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60039.t1 | AT1G72610 | 48.077 | 208 | 105 | 3 | 1 | 205 | 1 | 208 | 4.31e-60 | 187 |
| MS.gene60039.t1 | AT5G20630 | 48.077 | 208 | 104 | 4 | 1 | 204 | 3 | 210 | 1.95e-57 | 180 |
| MS.gene60039.t1 | AT5G38960 | 39.706 | 204 | 105 | 6 | 12 | 201 | 23 | 222 | 8.23e-36 | 125 |
| MS.gene60039.t1 | AT3G05950 | 40.777 | 206 | 108 | 6 | 10 | 201 | 16 | 221 | 1.00e-33 | 120 |
| MS.gene60039.t1 | AT1G09560 | 39.000 | 200 | 117 | 4 | 8 | 202 | 17 | 216 | 1.89e-33 | 119 |
| MS.gene60039.t1 | AT3G62020 | 38.462 | 208 | 115 | 7 | 7 | 201 | 8 | 215 | 2.57e-33 | 119 |
| MS.gene60039.t1 | AT5G26700 | 38.191 | 199 | 117 | 5 | 6 | 201 | 14 | 209 | 5.40e-33 | 118 |
| MS.gene60039.t1 | AT1G02335 | 38.503 | 187 | 110 | 4 | 20 | 201 | 29 | 215 | 1.10e-32 | 117 |
| MS.gene60039.t1 | AT3G05930 | 37.500 | 208 | 119 | 5 | 5 | 201 | 8 | 215 | 2.33e-32 | 116 |
| MS.gene60039.t1 | AT5G39190 | 37.379 | 206 | 115 | 6 | 10 | 201 | 14 | 219 | 4.06e-32 | 116 |
| MS.gene60039.t1 | AT5G38940 | 40.000 | 175 | 98 | 4 | 34 | 201 | 47 | 221 | 4.08e-32 | 116 |
| MS.gene60039.t1 | AT1G18980 | 37.313 | 201 | 119 | 5 | 6 | 201 | 20 | 218 | 4.26e-32 | 116 |
| MS.gene60039.t1 | AT5G39160 | 36.098 | 205 | 115 | 6 | 10 | 201 | 14 | 215 | 6.70e-32 | 115 |
| MS.gene60039.t1 | AT5G38940 | 40.000 | 175 | 98 | 4 | 34 | 201 | 71 | 245 | 7.11e-32 | 116 |
| MS.gene60039.t1 | AT5G39160 | 36.893 | 206 | 116 | 6 | 10 | 201 | 14 | 219 | 9.46e-32 | 115 |
| MS.gene60039.t1 | AT5G38910 | 38.614 | 202 | 107 | 6 | 13 | 201 | 22 | 219 | 2.48e-31 | 114 |
| MS.gene60039.t1 | AT5G39130 | 35.922 | 206 | 118 | 6 | 10 | 201 | 14 | 219 | 6.70e-31 | 113 |
| MS.gene60039.t1 | AT3G04200 | 36.493 | 211 | 114 | 7 | 1 | 194 | 8 | 215 | 1.15e-30 | 112 |
| MS.gene60039.t1 | AT3G10080 | 36.310 | 168 | 105 | 2 | 37 | 202 | 53 | 220 | 6.61e-30 | 110 |
| MS.gene60039.t1 | AT3G62020 | 38.506 | 174 | 101 | 5 | 34 | 201 | 13 | 186 | 6.79e-30 | 109 |
| MS.gene60039.t1 | AT5G39110 | 36.715 | 207 | 116 | 6 | 10 | 201 | 14 | 220 | 7.34e-30 | 110 |
| MS.gene60039.t1 | AT4G14630 | 37.073 | 205 | 111 | 6 | 11 | 201 | 22 | 222 | 1.62e-29 | 109 |
| MS.gene60039.t1 | AT5G38930 | 36.683 | 199 | 117 | 5 | 12 | 201 | 23 | 221 | 1.66e-29 | 109 |
| MS.gene60039.t1 | AT3G10080 | 36.310 | 168 | 105 | 2 | 37 | 202 | 124 | 291 | 2.42e-29 | 110 |
| MS.gene60039.t1 | AT1G18970 | 36.318 | 201 | 121 | 5 | 6 | 201 | 20 | 218 | 5.79e-29 | 107 |
| MS.gene60039.t1 | AT5G39120 | 35.377 | 212 | 121 | 7 | 5 | 201 | 9 | 219 | 2.04e-28 | 106 |
| MS.gene60039.t1 | AT3G04150 | 35.227 | 176 | 106 | 4 | 38 | 205 | 50 | 225 | 2.09e-28 | 106 |
| MS.gene60039.t1 | AT3G04150 | 35.227 | 176 | 106 | 4 | 38 | 205 | 63 | 238 | 2.75e-28 | 106 |
| MS.gene60039.t1 | AT5G39180 | 37.500 | 176 | 102 | 4 | 34 | 201 | 44 | 219 | 3.40e-28 | 105 |
| MS.gene60039.t1 | AT5G39150 | 37.500 | 176 | 102 | 4 | 34 | 201 | 44 | 219 | 9.06e-28 | 104 |
| MS.gene60039.t1 | AT5G39190 | 36.364 | 165 | 98 | 3 | 44 | 201 | 33 | 197 | 9.08e-27 | 101 |
| MS.gene60039.t1 | AT3G04190 | 35.838 | 173 | 103 | 4 | 38 | 202 | 50 | 222 | 1.94e-26 | 101 |
| MS.gene60039.t1 | AT5G39160 | 35.758 | 165 | 99 | 3 | 44 | 201 | 33 | 197 | 2.22e-26 | 100 |
| MS.gene60039.t1 | AT5G61750 | 40.299 | 134 | 77 | 3 | 34 | 164 | 40 | 173 | 2.45e-26 | 100 |
| MS.gene60039.t1 | AT3G04180 | 36.416 | 173 | 102 | 4 | 38 | 202 | 50 | 222 | 4.58e-26 | 100 |
| MS.gene60039.t1 | AT1G74820 | 40.940 | 149 | 83 | 4 | 20 | 165 | 41 | 187 | 7.37e-25 | 97.4 |
| MS.gene60039.t1 | AT1G10460 | 39.716 | 141 | 80 | 5 | 34 | 169 | 41 | 181 | 5.89e-24 | 94.7 |
| MS.gene60039.t1 | AT3G04170 | 33.645 | 214 | 119 | 8 | 6 | 202 | 12 | 219 | 7.07e-24 | 94.7 |
| MS.gene60039.t1 | AT5G38910 | 31.818 | 198 | 89 | 5 | 13 | 201 | 22 | 182 | 8.15e-17 | 75.1 |
Find 32 sgRNAs with CRISPR-Local
Find 38 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATACTTGATACTCTATTATT+TGG | 0.194314 | 4.3:+86241745 | MS.gene60039:CDS |
| AAAAGGGTTTATTGTGCTTC+CGG | 0.287277 | 4.3:-86241410 | None:intergenic |
| TAAAGTAGTCTCTGCAATTA+TGG | 0.288055 | 4.3:-86241785 | None:intergenic |
| GGTGTTATTGCAAAATTAAA+AGG | 0.297840 | 4.3:-86241427 | None:intergenic |
| AGAGCAGATTTCGGTATAAA+TGG | 0.319908 | 4.3:+86241502 | MS.gene60039:CDS |
| GGATAGCCTGAAGGGGTGTT+TGG | 0.320221 | 4.3:-86241331 | None:intergenic |
| TTTGTAGTTAACTCTGGTAT+TGG | 0.328442 | 4.3:+86241673 | MS.gene60039:CDS |
| AAAGGGTTTATTGTGCTTCC+GGG | 0.366887 | 4.3:-86241409 | None:intergenic |
| GATAGCCTGAAGGGGTGTTT+GGG | 0.403343 | 4.3:-86241330 | None:intergenic |
| GAATTACTTATCGTTGTTGA+AGG | 0.404833 | 4.3:+86241556 | MS.gene60039:CDS |
| ACAAAATGCAATAGTCCTTC+CGG | 0.407885 | 4.3:-86241655 | None:intergenic |
| CTACTCCCAAACACCCCTTC+AGG | 0.414099 | 4.3:+86241325 | MS.gene60039:CDS |
| AAACTGAAGGCTCAGTTTAA+CGG | 0.420980 | 4.3:+86241829 | MS.gene60039:CDS |
| ACATAAATCATCAGCATAAG+AGG | 0.443948 | 4.3:-86241290 | None:intergenic |
| ACTAGTTTACCAGGTCTTAA+CGG | 0.448053 | 4.3:+86241460 | MS.gene60039:CDS |
| TCTGCAGCAAGAGCAGATTT+CGG | 0.459225 | 4.3:+86241493 | MS.gene60039:CDS |
| GTGTTCTCTGGCTTTGTACC+CGG | 0.484764 | 4.3:+86241391 | MS.gene60039:CDS |
| GTATCAAGTATTTGTGTGCT+AGG | 0.485474 | 4.3:-86241733 | None:intergenic |
| GTGTTATTGCAAAATTAAAA+GGG | 0.511452 | 4.3:-86241426 | None:intergenic |
| TATTCGAAAACTGTTAAACC+TGG | 0.530998 | 4.3:+86241616 | MS.gene60039:CDS |
| GTTGAAGGTCAAATTACTGC+CGG | 0.534035 | 4.3:+86241571 | MS.gene60039:CDS |
| GACTTGCATGGATAGCCTGA+AGG | 0.536376 | 4.3:-86241340 | None:intergenic |
| GCATTTGTCACTAGTTTACC+AGG | 0.540832 | 4.3:+86241451 | MS.gene60039:CDS |
| TTACCAGGTCTTAACGGACT+TGG | 0.542899 | 4.3:+86241466 | MS.gene60039:CDS |
| AAGGCTCAGTTTAACGGCAC+TGG | 0.546212 | 4.3:+86241835 | MS.gene60039:CDS |
| ACTTGCATGGATAGCCTGAA+GGG | 0.557716 | 4.3:-86241339 | None:intergenic |
| ACATTTGTTTCTGACTTGCA+TGG | 0.591769 | 4.3:-86241352 | None:intergenic |
| GGTAAACTAGTGACAAATGC+AGG | 0.592955 | 4.3:-86241448 | None:intergenic |
| GTTGCATCATGAGTGTGCAC+TGG | 0.602414 | 4.3:-86241532 | None:intergenic |
| GTCACAGATTCTGAAACTGA+AGG | 0.635927 | 4.3:+86241816 | MS.gene60039:CDS |
| ATACCAAGTCCGTTAAGACC+TGG | 0.647866 | 4.3:-86241469 | None:intergenic |
| CTTGCATGGATAGCCTGAAG+GGG | 0.690334 | 4.3:-86241338 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATACTTGATACTCTATTATT+TGG | + | chr4.3:86241745-86241764 | MS.gene60039:CDS | 20.0% |
| !!! | GTGTTATTGCAAAATTAAAA+GGG | - | chr4.3:86241429-86241448 | None:intergenic | 20.0% |
| !! | TTTTGTTCGTGTAATAAATC+CGG | - | chr4.3:86241593-86241612 | None:intergenic | 25.0% |
| !!! | GGTGTTATTGCAAAATTAAA+AGG | - | chr4.3:86241430-86241449 | None:intergenic | 25.0% |
| ACATAAATCATCAGCATAAG+AGG | - | chr4.3:86241293-86241312 | None:intergenic | 30.0% | |
| GAATTACTTATCGTTGTTGA+AGG | + | chr4.3:86241556-86241575 | MS.gene60039:CDS | 30.0% | |
| TAAAGTAGTCTCTGCAATTA+TGG | - | chr4.3:86241788-86241807 | None:intergenic | 30.0% | |
| TATTCGAAAACTGTTAAACC+TGG | + | chr4.3:86241616-86241635 | MS.gene60039:CDS | 30.0% | |
| TTTGTAGTTAACTCTGGTAT+TGG | + | chr4.3:86241673-86241692 | MS.gene60039:CDS | 30.0% | |
| ! | TGGTGATCTTATAGTTTTTC+CGG | + | chr4.3:86241636-86241655 | MS.gene60039:CDS | 30.0% |
| ! | TTGCATTTTGTAGTTAACTC+TGG | + | chr4.3:86241667-86241686 | MS.gene60039:CDS | 30.0% |
| AAAAGGGTTTATTGTGCTTC+CGG | - | chr4.3:86241413-86241432 | None:intergenic | 35.0% | |
| AAACTGAAGGCTCAGTTTAA+CGG | + | chr4.3:86241829-86241848 | MS.gene60039:CDS | 35.0% | |
| ACAAAATGCAATAGTCCTTC+CGG | - | chr4.3:86241658-86241677 | None:intergenic | 35.0% | |
| AGAGCAGATTTCGGTATAAA+TGG | + | chr4.3:86241502-86241521 | MS.gene60039:CDS | 35.0% | |
| GGAAAAACTATAAGATCACC+AGG | - | chr4.3:86241637-86241656 | None:intergenic | 35.0% | |
| GTATCAAGTATTTGTGTGCT+AGG | - | chr4.3:86241736-86241755 | None:intergenic | 35.0% | |
| ! | ACTAGTTTACCAGGTCTTAA+CGG | + | chr4.3:86241460-86241479 | MS.gene60039:CDS | 35.0% |
| ! | GATCTTATAGTTTTTCCGGA+AGG | + | chr4.3:86241640-86241659 | MS.gene60039:CDS | 35.0% |
| ! | GTGAATGATTTTGTGTTCTC+TGG | + | chr4.3:86241379-86241398 | MS.gene60039:CDS | 35.0% |
| !! | ACATTTGTTTCTGACTTGCA+TGG | - | chr4.3:86241355-86241374 | None:intergenic | 35.0% |
| AAAGGGTTTATTGTGCTTCC+GGG | - | chr4.3:86241412-86241431 | None:intergenic | 40.0% | |
| GGTAAACTAGTGACAAATGC+AGG | - | chr4.3:86241451-86241470 | None:intergenic | 40.0% | |
| GTTGAAGGTCAAATTACTGC+CGG | + | chr4.3:86241571-86241590 | MS.gene60039:CDS | 40.0% | |
| ! | GCATTTGTCACTAGTTTACC+AGG | + | chr4.3:86241451-86241470 | MS.gene60039:CDS | 40.0% |
| !! | GTCACAGATTCTGAAACTGA+AGG | + | chr4.3:86241816-86241835 | MS.gene60039:CDS | 40.0% |
| ACTTGCATGGATAGCCTGAA+GGG | - | chr4.3:86241342-86241361 | None:intergenic | 45.0% | |
| ATACCAAGTCCGTTAAGACC+TGG | - | chr4.3:86241472-86241491 | None:intergenic | 45.0% | |
| TCTGCAGCAAGAGCAGATTT+CGG | + | chr4.3:86241493-86241512 | MS.gene60039:CDS | 45.0% | |
| !! | TTACCAGGTCTTAACGGACT+TGG | + | chr4.3:86241466-86241485 | MS.gene60039:CDS | 45.0% |
| AAGGCTCAGTTTAACGGCAC+TGG | + | chr4.3:86241835-86241854 | MS.gene60039:CDS | 50.0% | |
| CTTGCATGGATAGCCTGAAG+GGG | - | chr4.3:86241341-86241360 | None:intergenic | 50.0% | |
| GACTTGCATGGATAGCCTGA+AGG | - | chr4.3:86241343-86241362 | None:intergenic | 50.0% | |
| GTTGCATCATGAGTGTGCAC+TGG | - | chr4.3:86241535-86241554 | None:intergenic | 50.0% | |
| !! | GATAGCCTGAAGGGGTGTTT+GGG | - | chr4.3:86241333-86241352 | None:intergenic | 50.0% |
| !! | GTGTTCTCTGGCTTTGTACC+CGG | + | chr4.3:86241391-86241410 | MS.gene60039:CDS | 50.0% |
| CTACTCCCAAACACCCCTTC+AGG | + | chr4.3:86241325-86241344 | MS.gene60039:CDS | 55.0% | |
| !! | GGATAGCCTGAAGGGGTGTT+TGG | - | chr4.3:86241334-86241353 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.3 | gene | 86241244 | 86241861 | 86241244 | ID=MS.gene60039 |
| chr4.3 | mRNA | 86241244 | 86241861 | 86241244 | ID=MS.gene60039.t1;Parent=MS.gene60039 |
| chr4.3 | exon | 86241244 | 86241861 | 86241244 | ID=MS.gene60039.t1.exon1;Parent=MS.gene60039.t1 |
| chr4.3 | CDS | 86241244 | 86241861 | 86241244 | ID=cds.MS.gene60039.t1;Parent=MS.gene60039.t1 |
| Gene Sequence |
| Protein sequence |
