AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60288

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60288.t1 MTR_8g043650 90.295 237 23 0 1 237 1 237 5.51e-159 440
MS.gene60288.t1 MTR_1g012570 91.983 237 19 0 1 237 1 237 7.77e-152 422
MS.gene60288.t1 MTR_1g105910 88.186 237 28 0 1 237 1 237 1.57e-147 411
MS.gene60288.t1 MTR_1g105920 87.838 222 27 0 1 222 1 222 2.13e-143 400
MS.gene60288.t1 MTR_2g030740 86.076 237 33 0 1 237 1 237 8.86e-142 396
MS.gene60288.t1 MTR_3g052920 84.018 219 35 0 1 219 1 219 3.49e-138 387
MS.gene60288.t1 MTR_1g105905 83.636 220 36 0 18 237 1 220 1.24e-136 383
MS.gene60288.t1 MTR_3g052870 78.539 219 28 1 1 219 1 200 1.24e-121 345
MS.gene60288.t1 MTR_3g030770 71.915 235 48 3 1 225 1 227 7.81e-116 330
MS.gene60288.t1 MTR_5g055100 66.245 237 80 0 1 237 1 237 3.48e-115 329
MS.gene60288.t1 MTR_1g108510 71.915 235 48 3 1 225 1 227 5.61e-115 328
MS.gene60288.t1 MTR_2g085280 65.678 236 81 0 1 236 1 236 6.20e-114 326
MS.gene60288.t1 MTR_1g077360 68.889 225 70 0 1 225 1 225 1.10e-113 325
MS.gene60288.t1 MTR_0121s0080 68.776 237 73 1 1 237 1 236 1.96e-113 325
MS.gene60288.t1 MTR_2g085250 65.678 236 81 0 1 236 1 236 2.75e-113 324
MS.gene60288.t1 MTR_5g045560 70.042 237 71 0 1 237 1 237 4.55e-113 324
MS.gene60288.t1 MTR_1g075600 69.333 225 69 0 1 225 1 225 2.77e-112 322
MS.gene60288.t1 MTR_1g106070 84.615 182 28 0 1 182 1 182 4.13e-112 319
MS.gene60288.t1 MTR_2g093190 70.213 235 52 3 1 225 1 227 1.23e-110 317
MS.gene60288.t1 MTR_5g053390 67.556 225 73 0 1 225 1 225 2.37e-108 312
MS.gene60288.t1 MTR_1g108580 68.936 235 55 3 1 225 1 227 3.53e-108 311
MS.gene60288.t1 MTR_7g062350 64.126 223 78 2 16 237 27 248 5.31e-96 281
MS.gene60288.t1 MTR_1g075570 62.921 178 52 1 18 195 1 164 6.72e-68 206
MS.gene60288.t1 MTR_0121s0100 76.562 128 30 0 1 128 1 128 1.22e-65 199
MS.gene60288.t1 MTR_3g080940 51.892 185 79 1 7 191 7 181 3.57e-63 196
MS.gene60288.t1 MTR_3g030780 72.868 129 35 0 1 129 1 129 4.77e-62 191
MS.gene60288.t1 MTR_3g067910 64.706 102 36 0 21 122 2 103 1.14e-41 138
MS.gene60288.t1 MTR_2g105290 39.766 171 93 2 5 172 8 171 1.69e-41 140
MS.gene60288.t1 MTR_8g086290 40.964 166 88 2 5 167 8 166 1.33e-38 132
MS.gene60288.t1 MTR_7g028448 44.516 155 74 3 5 159 8 150 2.54e-35 124
MS.gene60288.t1 MTR_4g036915 44.516 155 74 3 5 159 8 150 2.54e-35 124
MS.gene60288.t1 MTR_1g108500 54.167 120 32 2 8 125 94 192 5.68e-30 114
MS.gene60288.t1 MTR_4g127140 38.122 181 92 4 5 172 8 181 8.76e-30 110
MS.gene60288.t1 MTR_3g067875 83.929 56 9 0 18 73 1 56 1.89e-27 100
MS.gene60288.t1 MTR_1g047550 41.259 143 66 5 9 135 2 142 2.09e-24 95.9
MS.gene60288.t1 MTR_8g079502 45.536 112 56 3 9 118 2 110 3.65e-24 95.5
MS.gene60288.t1 MTR_4g131030 33.529 170 86 4 9 162 2 160 6.37e-24 95.5
MS.gene60288.t1 MTR_8g051580 37.805 164 84 3 9 169 2 150 9.05e-24 94.4
MS.gene60288.t1 MTR_3g067870 69.841 63 19 0 16 78 83 145 1.72e-23 92.8
MS.gene60288.t1 MTR_3g067915 62.687 67 25 0 60 126 30 96 1.03e-22 89.0
MS.gene60288.t1 MTR_1g054265 43.363 113 62 1 9 121 2 112 1.08e-22 91.3
MS.gene60288.t1 MTR_1g063160 43.243 111 60 2 9 118 2 110 1.34e-22 91.3
MS.gene60288.t1 MTR_8g046350 36.620 142 82 2 9 147 2 138 2.20e-21 87.4
MS.gene60288.t1 MTR_4g094632 41.509 106 60 1 9 114 2 105 4.35e-20 84.0
MS.gene60288.t1 MTR_8g022970 32.911 158 93 3 8 159 17 167 1.20e-18 80.9
MS.gene60288.t1 MTR_4g094638 41.509 106 61 1 9 113 2 107 2.11e-18 80.1
MS.gene60288.t1 MTR_3g005530 33.974 156 90 3 9 153 2 155 3.46e-18 80.5
MS.gene60288.t1 MTR_1g053070 35.333 150 82 3 9 157 2 137 5.48e-18 80.5
MS.gene60288.t1 MTR_3g452380 51.351 74 36 0 3 76 11 84 8.97e-18 79.7
MS.gene60288.t1 MTR_4g093970 56.061 66 29 0 10 75 29 94 1.17e-17 79.3
MS.gene60288.t1 MTR_4g102530 50.685 73 36 0 10 82 3 75 1.26e-17 78.6
MS.gene60288.t1 MTR_2g017865 32.558 172 100 4 9 170 17 182 1.88e-17 79.3
MS.gene60288.t1 MTR_8g033270 34.545 165 92 5 9 164 2 159 3.79e-17 78.2
MS.gene60288.t1 MTR_5g066180 51.471 68 33 0 9 76 2 69 5.96e-17 77.4
MS.gene60288.t1 MTR_6g464720 38.211 123 68 4 9 126 2 121 9.51e-17 77.0
MS.gene60288.t1 MTR_8g087860 51.471 68 33 0 9 76 18 85 1.86e-16 76.3
MS.gene60288.t1 MTR_3g102570 41.346 104 58 3 9 111 2 103 3.39e-16 76.6
MS.gene60288.t1 MTR_1g101970 50.000 68 34 0 9 76 2 69 4.55e-16 73.9
MS.gene60288.t1 MTR_5g032150 29.730 148 87 2 9 156 2 132 5.61e-16 74.7
MS.gene60288.t1 MTR_3g437790 33.566 143 78 4 26 159 30 164 5.78e-16 73.9
MS.gene60288.t1 MTR_4g109830 47.826 69 35 1 9 76 2 70 6.29e-16 74.7
MS.gene60288.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 9.12e-16 73.9
MS.gene60288.t1 MTR_8g033220 50.725 69 34 0 10 78 3 71 1.04e-15 73.9
MS.gene60288.t1 MTR_7g075870 50.746 67 33 0 10 76 3 69 1.07e-15 73.6
MS.gene60288.t1 MTR_0003s0590 42.683 82 47 0 9 90 2 83 1.19e-15 74.3
MS.gene60288.t1 MTR_2g009890 48.529 68 35 0 9 76 2 69 1.83e-15 73.9
MS.gene60288.t1 MTR_5g032520 47.059 68 36 0 9 76 2 69 2.66e-15 72.8
MS.gene60288.t1 MTR_2g461710 55.357 56 25 0 9 64 2 57 2.80e-15 68.6
MS.gene60288.t1 MTR_4g084740 45.455 77 40 2 9 84 2 77 4.09e-15 73.6
MS.gene60288.t1 MTR_6g015975 49.275 69 34 1 9 76 2 70 4.19e-15 72.8
MS.gene60288.t1 MTR_7g016600 49.275 69 34 1 9 76 2 70 4.75e-15 72.4
MS.gene60288.t1 MTR_3g109930 32.394 142 76 4 27 159 20 150 4.80e-15 70.9
MS.gene60288.t1 MTR_5g046790 38.298 94 46 3 9 90 2 95 7.11e-15 71.2
MS.gene60288.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 8.03e-15 71.6
MS.gene60288.t1 MTR_3g088615 44.286 70 37 1 9 76 2 71 8.14e-15 70.5
MS.gene60288.t1 MTR_5g031000 48.529 68 35 0 9 76 2 69 8.91e-15 71.6
MS.gene60288.t1 MTR_8g066260 46.377 69 36 1 9 76 2 70 8.94e-15 71.6
MS.gene60288.t1 MTR_5g021270 37.168 113 63 3 9 119 2 108 1.20e-14 71.2
MS.gene60288.t1 MTR_5g021270 37.168 113 63 3 9 119 2 108 1.36e-14 70.9
MS.gene60288.t1 MTR_7g075870 50.000 68 33 1 10 76 3 70 2.26e-14 70.1
MS.gene60288.t1 MTR_5g046870 47.826 69 35 1 9 76 2 70 2.43e-14 67.4
MS.gene60288.t1 MTR_1g029670 42.857 70 38 1 9 76 2 71 2.51e-14 69.3
MS.gene60288.t1 MTR_1g038300 47.143 70 35 1 9 76 2 71 3.54e-14 69.7
MS.gene60288.t1 MTR_7g016630 43.478 69 38 1 9 76 2 70 3.65e-14 70.1
MS.gene60288.t1 MTR_5g066960 49.123 57 29 0 9 65 2 58 4.76e-14 65.1
MS.gene60288.t1 MTR_7g075850 47.143 70 35 1 9 76 2 71 9.96e-14 68.9
MS.gene60288.t1 MTR_3g084980 47.826 69 35 1 9 76 2 70 1.31e-13 68.6
MS.gene60288.t1 MTR_8g097090 46.377 69 36 1 9 76 2 70 1.94e-13 67.8
MS.gene60288.t1 MTR_3g113030 26.857 175 104 4 9 181 2 154 2.06e-13 67.8
MS.gene60288.t1 MTR_4g109810 51.786 56 27 0 9 64 2 57 2.60e-13 67.4
MS.gene60288.t1 MTR_4g051538 28.807 243 135 9 5 230 5 226 3.42e-13 67.0
MS.gene60288.t1 MTR_4g093030 28.289 152 84 2 9 135 2 153 9.43e-13 64.3
MS.gene60288.t1 MTR_4g108720 28.409 176 104 7 9 172 2 167 1.78e-12 66.2
MS.gene60288.t1 MTR_2g045020 30.303 165 83 7 7 159 21 165 5.67e-12 62.8
MS.gene60288.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 2.87e-11 60.8
MS.gene60288.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 3.37e-11 60.8
MS.gene60288.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 4.62e-11 60.8
MS.gene60288.t1 MTR_4g036050 30.872 149 86 6 9 156 2 134 4.68e-11 60.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60288.t1 AT5G60440 47.107 242 115 4 5 233 3 244 1.19e-60 192
MS.gene60288.t1 AT2G24840 48.780 164 73 4 6 163 60 218 9.10e-43 145
MS.gene60288.t1 AT1G65360 38.767 227 124 6 5 225 3 220 2.64e-42 143
MS.gene60288.t1 AT1G01530 42.188 192 99 4 4 192 2 184 1.82e-40 139
MS.gene60288.t1 AT4G36590 46.296 162 81 2 5 160 3 164 1.63e-38 134
MS.gene60288.t1 AT2G34440 37.349 166 92 4 9 169 2 160 1.60e-27 103
MS.gene60288.t1 AT3G66656 42.748 131 70 2 9 134 2 132 3.85e-27 103
MS.gene60288.t1 AT1G72350 34.868 152 66 4 9 160 43 161 1.15e-21 90.1
MS.gene60288.t1 AT3G04100 30.864 162 108 3 2 159 7 168 2.12e-21 89.0
MS.gene60288.t1 AT2G45660 34.524 168 82 6 10 162 3 157 2.55e-19 82.0
MS.gene60288.t1 AT4G22950 50.685 73 36 0 10 82 3 75 9.93e-19 80.9
MS.gene60288.t1 AT2G45660 34.337 166 81 6 10 160 3 155 1.46e-18 81.3
MS.gene60288.t1 AT1G28460 31.429 175 104 5 5 169 4 172 1.80e-18 80.5
MS.gene60288.t1 AT4G09960 46.512 86 45 1 9 93 2 87 3.53e-18 80.5
MS.gene60288.t1 AT4G09960 46.512 86 45 1 9 93 2 87 4.06e-18 80.5
MS.gene60288.t1 AT4G09960 46.512 86 45 1 9 93 3 88 4.09e-18 80.5
MS.gene60288.t1 AT4G22950 52.113 71 34 0 10 80 3 73 4.27e-18 80.1
MS.gene60288.t1 AT4G22950 52.113 71 34 0 10 80 3 73 4.27e-18 80.1
MS.gene60288.t1 AT4G09960 46.512 86 45 1 9 93 12 97 5.28e-18 80.5
MS.gene60288.t1 AT4G18960 31.092 238 138 9 5 226 15 242 5.49e-18 80.5
MS.gene60288.t1 AT4G09960 46.512 86 45 1 9 93 28 113 8.08e-18 80.1
MS.gene60288.t1 AT2G45650 52.941 68 32 0 9 76 2 69 8.17e-18 80.1
MS.gene60288.t1 AT4G24540 35.135 148 79 4 9 156 2 132 1.59e-17 79.0
MS.gene60288.t1 AT4G09960 46.512 86 45 1 9 93 97 182 2.29e-17 80.1
MS.gene60288.t1 AT5G51870 53.731 67 31 0 10 76 3 69 3.88e-17 76.6
MS.gene60288.t1 AT5G51870 53.731 67 31 0 10 76 3 69 5.02e-17 77.0
MS.gene60288.t1 AT5G51870 50.000 72 36 0 5 76 21 92 9.02e-17 76.3
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.01e-16 75.1
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.01e-16 75.1
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.01e-16 75.1
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.01e-16 75.1
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.01e-16 75.1
MS.gene60288.t1 AT2G22540 37.594 133 73 4 9 132 2 133 1.07e-16 77.0
MS.gene60288.t1 AT2G22540 37.594 133 73 4 9 132 2 133 1.07e-16 77.0
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.10e-16 73.6
MS.gene60288.t1 AT5G51870 53.731 67 31 0 10 76 3 69 1.15e-16 76.3
MS.gene60288.t1 AT3G61120 44.318 88 48 1 9 95 2 89 1.20e-16 77.0
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.24e-16 74.7
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.24e-16 74.7
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 1.24e-16 74.7
MS.gene60288.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.37e-16 75.1
MS.gene60288.t1 AT5G51870 53.731 67 31 0 10 76 13 79 1.39e-16 76.3
MS.gene60288.t1 AT5G10140 50.725 69 33 1 9 76 2 70 1.89e-16 75.1
MS.gene60288.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.28e-16 75.1
MS.gene60288.t1 AT5G10140 50.725 69 33 1 9 76 2 70 2.45e-16 74.7
MS.gene60288.t1 AT3G58780 50.704 71 35 0 6 76 14 84 2.46e-16 76.3
MS.gene60288.t1 AT2G42830 50.704 71 35 0 6 76 14 84 2.61e-16 75.9
MS.gene60288.t1 AT2G42830 51.471 68 33 0 9 76 17 84 2.86e-16 75.9
MS.gene60288.t1 AT3G58780 50.704 71 35 0 6 76 20 90 2.90e-16 75.9
MS.gene60288.t1 AT3G57230 47.059 68 36 0 9 76 2 69 3.43e-16 73.6
MS.gene60288.t1 AT3G58780 50.704 71 35 0 6 76 14 84 4.85e-16 75.9
MS.gene60288.t1 AT4G11880 48.101 79 38 2 10 87 3 79 5.27e-16 73.9
MS.gene60288.t1 AT4G11880 48.101 79 38 2 10 87 3 79 5.27e-16 73.9
MS.gene60288.t1 AT3G54340 28.571 154 90 3 9 162 2 135 5.43e-16 74.7
MS.gene60288.t1 AT3G57390 50.000 68 34 0 9 76 2 69 5.50e-16 74.7
MS.gene60288.t1 AT5G13790 43.011 93 44 1 9 101 2 85 5.53e-16 75.5
MS.gene60288.t1 AT5G13790 51.471 68 33 0 9 76 2 69 7.06e-16 75.1
MS.gene60288.t1 AT1G77950 45.455 77 40 2 9 84 2 77 7.66e-16 74.7
MS.gene60288.t1 AT1G77950 45.455 77 40 2 9 84 2 77 7.66e-16 74.7
MS.gene60288.t1 AT1G77950 45.455 77 40 2 9 84 2 77 7.66e-16 74.7
MS.gene60288.t1 AT1G77950 45.455 77 40 2 9 84 2 77 7.66e-16 74.7
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 7.78e-16 73.9
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 7.78e-16 73.9
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 7.78e-16 73.9
MS.gene60288.t1 AT4G37940 48.529 68 35 0 9 76 2 69 8.00e-16 73.9
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 8.39e-16 73.6
MS.gene60288.t1 AT5G62165 46.154 78 40 1 10 87 3 78 8.39e-16 73.6
MS.gene60288.t1 AT4G37940 48.529 68 35 0 9 76 2 69 8.48e-16 74.3
MS.gene60288.t1 AT1G77980 37.143 105 65 1 9 112 2 106 8.91e-16 75.5
MS.gene60288.t1 AT1G29962 29.714 175 110 5 5 169 4 175 8.97e-16 73.2
MS.gene60288.t1 AT1G22130 36.190 105 66 1 9 112 2 106 9.48e-16 75.5
MS.gene60288.t1 AT4G37940 48.529 68 35 0 9 76 2 69 9.79e-16 72.8
MS.gene60288.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.11e-15 73.9
MS.gene60288.t1 AT3G57230 47.059 68 36 0 9 76 2 69 1.11e-15 73.9
MS.gene60288.t1 AT4G11880 48.101 79 38 2 10 87 3 79 1.16e-15 73.6
MS.gene60288.t1 AT4G11880 48.101 79 38 2 10 87 3 79 1.16e-15 73.6
MS.gene60288.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.22e-15 73.2
MS.gene60288.t1 AT3G57390 50.000 68 34 0 9 76 2 69 1.30e-15 74.3
MS.gene60288.t1 AT5G51860 52.239 67 32 0 10 76 3 69 1.40e-15 73.2
MS.gene60288.t1 AT5G20240 47.143 70 35 1 9 76 2 71 1.56e-15 71.6
MS.gene60288.t1 AT3G30260 30.120 166 96 5 9 172 2 149 1.99e-15 73.6
MS.gene60288.t1 AT5G20240 47.143 70 35 1 9 76 2 71 3.23e-15 72.4
MS.gene60288.t1 AT5G23260 44.330 97 46 3 2 90 9 105 3.26e-15 73.2
MS.gene60288.t1 AT5G23260 44.330 97 46 3 2 90 9 105 3.83e-15 73.2
MS.gene60288.t1 AT2G22630 47.059 68 36 0 9 76 2 69 3.86e-15 72.4
MS.gene60288.t1 AT2G22630 47.059 68 36 0 9 76 2 69 3.86e-15 72.4
MS.gene60288.t1 AT1G69120 40.659 91 51 1 9 99 2 89 3.88e-15 72.4
MS.gene60288.t1 AT1G26310 47.826 69 35 1 9 76 2 70 4.41e-15 72.8
MS.gene60288.t1 AT5G60910 49.296 71 33 1 9 79 2 69 4.57e-15 72.4
MS.gene60288.t1 AT1G17310 51.899 79 36 1 8 86 47 123 6.12e-15 71.6
MS.gene60288.t1 AT5G23260 45.455 88 42 2 9 90 2 89 7.01e-15 72.0
MS.gene60288.t1 AT5G23260 45.455 88 42 2 9 90 2 89 7.43e-15 72.0
MS.gene60288.t1 AT1G17310 51.899 79 36 1 8 86 58 134 7.95e-15 71.6
MS.gene60288.t1 AT1G69120 40.659 91 51 1 9 99 2 89 9.18e-15 72.0
MS.gene60288.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.14e-14 71.6
MS.gene60288.t1 AT2G22540 36.842 133 69 5 9 132 2 128 1.52e-14 70.9
MS.gene60288.t1 AT5G15800 49.275 69 34 1 9 76 2 70 1.93e-14 71.2
MS.gene60288.t1 AT5G65050 46.377 69 36 1 9 76 2 70 2.43e-14 69.3
MS.gene60288.t1 AT3G58780 53.333 60 28 0 6 65 14 73 4.63e-14 69.7
MS.gene60288.t1 AT5G65050 46.377 69 36 1 9 76 2 70 4.82e-14 68.6
MS.gene60288.t1 AT3G58780 53.333 60 28 0 6 65 14 73 4.95e-14 70.1
MS.gene60288.t1 AT5G65050 46.377 69 36 1 9 76 2 70 5.40e-14 68.6
MS.gene60288.t1 AT5G65050 46.377 69 36 1 9 76 2 70 5.42e-14 68.6
MS.gene60288.t1 AT2G03710 53.571 56 26 0 9 64 2 57 7.06e-14 68.2
MS.gene60288.t1 AT5G65060 46.377 69 36 1 9 76 2 70 8.06e-14 68.2
MS.gene60288.t1 AT5G65060 46.377 69 36 1 9 76 2 70 8.70e-14 67.8
MS.gene60288.t1 AT3G02310 47.826 69 35 1 9 76 2 70 8.76e-14 68.2
MS.gene60288.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.01e-13 68.6
MS.gene60288.t1 AT5G65060 46.377 69 36 1 9 76 2 70 1.03e-13 67.8
MS.gene60288.t1 AT2G14210 44.928 69 37 1 9 76 2 70 1.45e-13 68.2
MS.gene60288.t1 AT3G02310 47.826 69 35 1 9 76 2 70 1.72e-13 68.2
MS.gene60288.t1 AT1G28450 29.518 166 102 6 5 161 4 163 1.88e-13 67.0
MS.gene60288.t1 AT1G24260 53.571 56 26 0 9 64 2 57 1.91e-13 67.8
MS.gene60288.t1 AT1G24260 53.571 56 26 0 9 64 2 57 2.16e-13 67.8
MS.gene60288.t1 AT2G03710 53.571 56 26 0 9 64 2 57 2.22e-13 68.2
MS.gene60288.t1 AT1G24260 53.571 56 26 0 9 64 2 57 2.25e-13 67.8
MS.gene60288.t1 AT2G03710 53.571 56 26 0 9 64 2 57 2.32e-13 68.2
MS.gene60288.t1 AT5G65070 42.029 69 39 1 9 76 2 70 3.51e-13 65.5
MS.gene60288.t1 AT1G71692 44.286 70 38 1 9 77 2 71 5.09e-13 66.2
MS.gene60288.t1 AT5G65070 42.029 69 39 1 9 76 2 70 6.88e-13 65.9
MS.gene60288.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.27e-12 65.5
MS.gene60288.t1 AT5G65070 42.029 69 39 1 9 76 2 70 1.27e-12 65.1
MS.gene60288.t1 AT1G47760 41.791 67 39 0 9 75 2 68 2.17e-12 63.9
MS.gene60288.t1 AT5G65070 47.368 57 30 0 9 65 2 58 3.00e-12 64.7
MS.gene60288.t1 AT5G65080 48.333 60 29 1 5 62 3 62 3.21e-11 60.8
MS.gene60288.t1 AT5G65080 43.548 62 35 0 1 62 1 62 4.64e-11 60.8
MS.gene60288.t1 AT4G37435 40.278 72 42 1 9 79 2 73 6.95e-11 60.1
MS.gene60288.t1 AT5G27130 41.176 85 46 2 2 82 6 90 7.30e-11 61.2

Find 53 sgRNAs with CRISPR-Local

Find 72 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTGTTTGGTTTCAACAATA+TGG 0.234944 1.1:-8544066 MS.gene60288:CDS
ATTTGAGTTTGCGGAGGATT+TGG 0.294464 1.1:+8544131 None:intergenic
TGGTGGGCTGGTTCCGTTGA+TGG 0.307687 1.1:-8544317 MS.gene60288:CDS
AGGCAACCGAGACTCAATTT+TGG 0.344827 1.1:-8544337 MS.gene60288:CDS
TTGTTTGGTTTCAACAATAT+GGG 0.345119 1.1:-8544065 MS.gene60288:CDS
TTGCATGGTACCATTGTCTT+GGG 0.366211 1.1:+8544475 None:intergenic
ATGTTGCAACCTCATTTGTT+TGG 0.384083 1.1:-8544080 MS.gene60288:CDS
GACTCAGATCAACCAGCTAT+TGG 0.396679 1.1:-8544402 MS.gene60288:CDS
TCTTCTCATTGTCCAATAGC+TGG 0.404262 1.1:+8544390 None:intergenic
GGTGGGCTGGTTCCGTTGAT+GGG 0.444286 1.1:-8544316 MS.gene60288:CDS
TGCTAATAGACTTGTAATCC+AGG 0.466664 1.1:-8544225 MS.gene60288:CDS
TTCCGTTGATGGGATGAATA+TGG 0.470577 1.1:-8544306 MS.gene60288:CDS
ATGATCGAGAGGCATGTTAG+AGG 0.481598 1.1:+8544157 None:intergenic
TCTCGGTTGCCTTGCGCAAG+TGG 0.488530 1.1:+8544348 None:intergenic
AACAAATGAGGTTGCAACAT+AGG 0.496587 1.1:+8544083 None:intergenic
ATCTATGACTATATCAACAT+TGG 0.496796 1.1:+8544520 None:intergenic
GGGCTCAGATCAAAAGAATC+CGG 0.505206 1.1:+8544019 None:intergenic
GCTGGAAATATTTGAGTTTG+CGG 0.509101 1.1:+8544122 None:intergenic
TCTATGACTATATCAACATT+GGG 0.510555 1.1:+8544521 None:intergenic
ATGGTACCATTGTCTTGGGG+TGG 0.512474 1.1:+8544479 None:intergenic
AGGTTTGAGTAGGAGCGCCC+TGG 0.514885 1.1:+8544207 None:intergenic
ACAGAGAGTGCAAAGCTCAC+TGG 0.525840 1.1:+8544604 None:intergenic
ACAAATGAGGTTGCAACATA+GGG 0.527904 1.1:+8544084 None:intergenic
ATTGCATGGTACCATTGTCT+TGG 0.536698 1.1:+8544474 None:intergenic
TGGTACCATTGTCTTGGGGT+GGG 0.543595 1.1:+8544480 None:intergenic
TGACTATATCAACATTGGGT+TGG 0.551380 1.1:+8544525 None:intergenic
CTTTCTCGAAGCGCCGTAGT+GGG 0.553366 1.1:-8544640 MS.gene60288:CDS
TGTTTGGTTTCAACAATATG+GGG 0.556331 1.1:-8544064 MS.gene60288:CDS
TTGTTGAAACCAAACAAATG+AGG 0.558095 1.1:+8544071 None:intergenic
ACTTTCTCGAAGCGCCGTAG+TGG 0.571963 1.1:-8544641 MS.gene60288:CDS
GCTCGCGCACGTTGGCACTA+CGG 0.576720 1.1:+8544438 None:intergenic
GGAGGTGGATATGTACCCTC+CGG 0.585206 1.1:-8544038 MS.gene60288:CDS
AATGAAAATACCTTCTCCCC+AGG 0.587583 1.1:+8544551 None:intergenic
GGCCATATTCATCCCATCAA+CGG 0.588307 1.1:+8544304 None:intergenic
AGCCCACCAAAATTGAGTCT+CGG 0.589062 1.1:+8544331 None:intergenic
AGAGCTGAGCCACTTGCGCA+AGG 0.589828 1.1:-8544357 MS.gene60288:CDS
CTTCAACCATGTCAAGTGGA+AGG 0.599332 1.1:-8544727 None:intergenic
TGTGCTTCAACCATGTCAAG+TGG 0.601126 1.1:-8544731 None:intergenic
GTTTGGTTTCAACAATATGG+GGG 0.607401 1.1:-8544063 MS.gene60288:CDS
CTTTCTTGAAGAGCCCACTA+CGG 0.610979 1.1:+8544627 None:intergenic
GGATTTGGTTGATGATCGAG+AGG 0.624852 1.1:+8544146 None:intergenic
GGAAATATTTGAGTTTGCGG+AGG 0.627262 1.1:+8544125 None:intergenic
TGCATGGTACCATTGTCTTG+GGG 0.627345 1.1:+8544476 None:intergenic
AGTGAGCTTTGCACTCTCTG+TGG 0.635156 1.1:-8544602 MS.gene60288:CDS
GCTAATAGACTTGTAATCCA+GGG 0.635406 1.1:-8544224 MS.gene60288:CDS
TTTGGTTTCAACAATATGGG+GGG 0.638238 1.1:-8544062 MS.gene60288:CDS
TGGTACCATGCAATTCATTG+AGG 0.638950 1.1:-8544465 MS.gene60288:CDS
CGAGTCCCACCCCAAGACAA+TGG 0.640012 1.1:-8544485 MS.gene60288:CDS
GTGAGCCTCAATGAATTGCA+TGG 0.640763 1.1:+8544460 None:intergenic
AATATTGAGCTCGCGCACGT+TGG 0.641144 1.1:+8544430 None:intergenic
CTCAGATCAAAAGAATCCGG+AGG 0.658116 1.1:+8544022 None:intergenic
TCAGATCAAAAGAATCCGGA+GGG 0.679689 1.1:+8544023 None:intergenic
TCAAGTGGAAGGAAAAGCCG+AGG 0.705721 1.1:-8544716 MS.gene60288:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CTTTTTGAAAAATTCAAGTT+GGG + chr1.1:8544467-8544486 None:intergenic 20.0%
!!! TTTTTTTCATCTCAATCTTT+TGG + chr1.1:8544060-8544079 None:intergenic 20.0%
! ATCTATGACTATATCAACAT+TGG + chr1.1:8544230-8544249 None:intergenic 25.0%
! ATTTCCAACAAAAAATGGAA+AGG + chr1.1:8544563-8544582 None:intergenic 25.0%
! TCTATGACTATATCAACATT+GGG + chr1.1:8544229-8544248 None:intergenic 25.0%
!! TTGTTTGGTTTCAACAATAT+GGG - chr1.1:8544682-8544701 MS.gene60288:CDS 25.0%
!! TTTGTTTGGTTTCAACAATA+TGG - chr1.1:8544681-8544700 MS.gene60288:CDS 25.0%
!!! CCAACTTGAATTTTTCAAAA+AGG - chr1.1:8544465-8544484 MS.gene60288:CDS 25.0%
!!! CCTTTTTGAAAAATTCAAGT+TGG + chr1.1:8544468-8544487 None:intergenic 25.0%
!!! TGAATTTTTCAAAAAGGCTT+TGG - chr1.1:8544471-8544490 MS.gene60288:CDS 25.0%
!!! TTTCCATTTTTTGTTGGAAA+TGG - chr1.1:8544562-8544581 MS.gene60288:CDS 25.0%
AAAAATGGAAAGGTTTGAGT+AGG + chr1.1:8544553-8544572 None:intergenic 30.0%
GAACCATTTCCAACAAAAAA+TGG + chr1.1:8544568-8544587 None:intergenic 30.0%
TTGTTGAAACCAAACAAATG+AGG + chr1.1:8544679-8544698 None:intergenic 30.0%
! TGTTTGGTTTCAACAATATG+GGG - chr1.1:8544683-8544702 MS.gene60288:CDS 30.0%
!! ATTTTTCAAAAAGGCTTTGG+AGG - chr1.1:8544474-8544493 MS.gene60288:CDS 30.0%
!!! CAAACCTTTCCATTTTTTGT+TGG - chr1.1:8544556-8544575 MS.gene60288:CDS 30.0%
AACAAATGAGGTTGCAACAT+AGG + chr1.1:8544667-8544686 None:intergenic 35.0%
ACAAATGAGGTTGCAACATA+GGG + chr1.1:8544666-8544685 None:intergenic 35.0%
ATGTTGCAACCTCATTTGTT+TGG - chr1.1:8544667-8544686 MS.gene60288:CDS 35.0%
GCTAATAGACTTGTAATCCA+GGG - chr1.1:8544523-8544542 MS.gene60288:CDS 35.0%
TGACTATATCAACATTGGGT+TGG + chr1.1:8544225-8544244 None:intergenic 35.0%
TGCTAATAGACTTGTAATCC+AGG - chr1.1:8544522-8544541 MS.gene60288:CDS 35.0%
! GCTGGAAATATTTGAGTTTG+CGG + chr1.1:8544628-8544647 None:intergenic 35.0%
! GTTTGGTTTCAACAATATGG+GGG - chr1.1:8544684-8544703 MS.gene60288:CDS 35.0%
! TTTGGTTTCAACAATATGGG+GGG - chr1.1:8544685-8544704 MS.gene60288:CDS 35.0%
AATGAAAATACCTTCTCCCC+AGG + chr1.1:8544199-8544218 None:intergenic 40.0%
ATTGCATGGTACCATTGTCT+TGG + chr1.1:8544276-8544295 None:intergenic 40.0%
TCTTCTCATTGTCCAATAGC+TGG + chr1.1:8544360-8544379 None:intergenic 40.0%
TGGTACCATGCAATTCATTG+AGG - chr1.1:8544282-8544301 MS.gene60288:CDS 40.0%
TTGCATGGTACCATTGTCTT+GGG + chr1.1:8544275-8544294 None:intergenic 40.0%
! ATTTGAGTTTGCGGAGGATT+TGG + chr1.1:8544619-8544638 None:intergenic 40.0%
! GGAAATATTTGAGTTTGCGG+AGG + chr1.1:8544625-8544644 None:intergenic 40.0%
! TTCCGTTGATGGGATGAATA+TGG - chr1.1:8544441-8544460 MS.gene60288:CDS 40.0%
!! AACCGAGACTCAATTTTGGT+GGG - chr1.1:8544414-8544433 MS.gene60288:CDS 40.0%
!! GGGTTCTGAAAAAATTGTGC+TGG + chr1.1:8544646-8544665 None:intergenic 40.0%
!!! GGGGAGAAGGTATTTTCATT+TGG - chr1.1:8544199-8544218 MS.gene60288:CDS 40.0%
AGCCCACCAAAATTGAGTCT+CGG + chr1.1:8544419-8544438 None:intergenic 45.0%
CTTTCTTGAAGAGCCCACTA+CGG + chr1.1:8544123-8544142 None:intergenic 45.0%
GACTCAGATCAACCAGCTAT+TGG - chr1.1:8544345-8544364 MS.gene60288:CDS 45.0%
GGCCATATTCATCCCATCAA+CGG + chr1.1:8544446-8544465 None:intergenic 45.0%
GTGAGCCTCAATGAATTGCA+TGG + chr1.1:8544290-8544309 None:intergenic 45.0%
TGCATGGTACCATTGTCTTG+GGG + chr1.1:8544274-8544293 None:intergenic 45.0%
! AGGCAACCGAGACTCAATTT+TGG - chr1.1:8544410-8544429 MS.gene60288:CDS 45.0%
! ATGATCGAGAGGCATGTTAG+AGG + chr1.1:8544593-8544612 None:intergenic 45.0%
! CAACCGAGACTCAATTTTGG+TGG - chr1.1:8544413-8544432 MS.gene60288:CDS 45.0%
! TCTCAATCTTTTGGCGACCT+CGG + chr1.1:8544051-8544070 None:intergenic 45.0%
!! CTCTCGTTGTTTTCTCACCT+GGG - chr1.1:8544179-8544198 MS.gene60288:CDS 45.0%
!! GGATTTGGTTGATGATCGAG+AGG + chr1.1:8544604-8544623 None:intergenic 45.0%
!! TCTCGTTGTTTTCTCACCTG+GGG - chr1.1:8544180-8544199 MS.gene60288:CDS 45.0%
AATATTGAGCTCGCGCACGT+TGG + chr1.1:8544320-8544339 None:intergenic 50.0%
AGTGAGCTTTGCACTCTCTG+TGG - chr1.1:8544145-8544164 MS.gene60288:CDS 50.0%
ATGGTACCATTGTCTTGGGG+TGG + chr1.1:8544271-8544290 None:intergenic 50.0%
GGTTTCAACAATATGGGGGG+AGG - chr1.1:8544688-8544707 MS.gene60288:CDS 50.0%
TCAAGTGGAAGGAAAAGCCG+AGG - chr1.1:8544031-8544050 MS.gene60288:CDS 50.0%
TGGTACCATTGTCTTGGGGT+GGG + chr1.1:8544270-8544289 None:intergenic 50.0%
TTCAACAATATGGGGGGAGG+AGG - chr1.1:8544691-8544710 MS.gene60288:CDS 50.0%
! ACAGAGAGTGCAAAGCTCAC+TGG + chr1.1:8544146-8544165 None:intergenic 50.0%
! TGTTTTCTCACCTGGGGAGA+AGG - chr1.1:8544186-8544205 MS.gene60288:CDS 50.0%
!! GAGACTCAATTTTGGTGGGC+TGG - chr1.1:8544418-8544437 MS.gene60288:CDS 50.0%
!! GCTCTCGTTGTTTTCTCACC+TGG - chr1.1:8544178-8544197 MS.gene60288:CDS 50.0%
AACAATATGGGGGGAGGAGG+TGG - chr1.1:8544694-8544713 MS.gene60288:CDS 55.0%
GGAGGTGGATATGTACCCTC+CGG - chr1.1:8544709-8544728 MS.gene60288:CDS 55.0%
!! ACTTTCTCGAAGCGCCGTAG+TGG - chr1.1:8544106-8544125 MS.gene60288:CDS 55.0%
!! CTTTCTCGAAGCGCCGTAGT+GGG - chr1.1:8544107-8544126 MS.gene60288:CDS 55.0%
AGAGCTGAGCCACTTGCGCA+AGG - chr1.1:8544390-8544409 MS.gene60288:CDS 60.0%
CGAGTCCCACCCCAAGACAA+TGG - chr1.1:8544262-8544281 MS.gene60288:CDS 60.0%
TCTCGGTTGCCTTGCGCAAG+TGG + chr1.1:8544402-8544421 None:intergenic 60.0%
!! AGGTTTGAGTAGGAGCGCCC+TGG + chr1.1:8544543-8544562 None:intergenic 60.0%
!! GGTGGGCTGGTTCCGTTGAT+GGG - chr1.1:8544431-8544450 MS.gene60288:CDS 60.0%
!! TGGTGGGCTGGTTCCGTTGA+TGG - chr1.1:8544430-8544449 MS.gene60288:CDS 60.0%
GCTCGCGCACGTTGGCACTA+CGG + chr1.1:8544312-8544331 None:intergenic 65.0%


Chromosome Type Strat End Strand Name
chr1.1 gene 8544028 8544741 8544028 ID=MS.gene60288
chr1.1 mRNA 8544028 8544741 8544028 ID=MS.gene60288.t1;Parent=MS.gene60288
chr1.1 exon 8544028 8544741 8544028 ID=MS.gene60288.t1.exon1;Parent=MS.gene60288.t1
chr1.1 CDS 8544028 8544741 8544028 ID=cds.MS.gene60288.t1;Parent=MS.gene60288.t1
Gene Sequence

>MS.gene60288

ATGTCAAGTGGAAGGAAAAGCCGAGGTCGCCAAAAGATTGAGATGAAAAAAATGAGCAACGAGAGCAACTTGCAAGTGACTTTCTCGAAGCGCCGTAGTGGGCTCTTCAAGAAAGCCAGTGAGCTTTGCACTCTCTGTGGTGCAAATGTTGCTCTCGTTGTTTTCTCACCTGGGGAGAAGGTATTTTCATTTGGCCAACCCAATGTTGATATAGTCATAGATCGTTATCTCTCTCGAGTCCCACCCCAAGACAATGGTACCATGCAATTCATTGAGGCTCACCGTAGTGCCAACGTGCGCGAGCTCAATATTCAGTTGACTCAGATCAACCAGCTATTGGACAATGAGAAGAAACACGCTGAAGAGCTGAGCCACTTGCGCAAGGCAACCGAGACTCAATTTTGGTGGGCTGGTTCCGTTGATGGGATGAATATGGCCCAACTTGAATTTTTCAAAAAGGCTTTGGAGGAGATTAAGAAACTTGTTGCACATCATGCTAATAGACTTGTAATCCAGGGCGCTCCTACTCAAACCTTTCCATTTTTTGTTGGAAATGGTTCATCCTCTAACATGCCTCTCGATCATCAACCAAATCCTCCGCAAACTCAAATATTTCCAGCACAATTTTTTCAGAACCCTATGTTGCAACCTCATTTGTTTGGTTTCAACAATATGGGGGGAGGAGGTGGATATGTACCCTCCGGATTCTTTTGA
Protein sequence

>MS.gene60288.t1

MSSGRKSRGRQKIEMKKMSNESNLQVTFSKRRSGLFKKASELCTLCGANVALVVFSPGEKVFSFGQPNVDIVIDRYLSRVPPQDNGTMQFIEAHRSANVRELNIQLTQINQLLDNEKKHAEELSHLRKATETQFWWAGSVDGMNMAQLEFFKKALEEIKKLVAHHANRLVIQGAPTQTFPFFVGNGSSSNMPLDHQPNPPQTQIFPAQFFQNPMLQPHLFGFNNMGGGGGYVPSGFF