Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60585.t1 | XP_003591776.2 | 96.6 | 528 | 16 | 1 | 1 | 528 | 1 | 526 | 7.40E-293 | 1015.8 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60585.t1 | B9RAJ0 | 54.4 | 489 | 200 | 4 | 58 | 527 | 6 | 490 | 1.6e-155 | 550.8 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60585.t1 | G7I369 | 96.6 | 528 | 16 | 1 | 1 | 528 | 1 | 526 | 5.4e-293 | 1015.8 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene050301 | MS.gene60585 | 0.816465 | 5.45E-52 | -1.69E-46 |
MS.gene05213 | MS.gene60585 | 0.802388 | 5.74E-49 | -1.69E-46 |
MS.gene05455 | MS.gene60585 | 0.820835 | 5.56E-53 | -1.69E-46 |
MS.gene05811 | MS.gene60585 | 0.812707 | 3.70E-51 | -1.69E-46 |
MS.gene05907 | MS.gene60585 | 0.823438 | 1.39E-53 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60585.t1 | MTR_1g092920 | 96.591 | 528 | 16 | 1 | 1 | 528 | 1 | 526 | 0.0 | 1060 |
MS.gene60585.t1 | MTR_3g088860 | 55.230 | 478 | 195 | 5 | 64 | 527 | 9 | 481 | 0.0 | 561 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60585.t1 | AT5G04710 | 78.008 | 482 | 102 | 3 | 47 | 527 | 47 | 525 | 0.0 | 800 |
MS.gene60585.t1 | AT5G60160 | 57.773 | 476 | 185 | 5 | 64 | 527 | 5 | 476 | 0.0 | 576 |
Find 113 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATGCTTATCTGCAAAATT+TGG | 0.136182 | 1.2:+69214114 | None:intergenic |
AGAAGATGAGTCTCAAAATT+TGG | 0.216625 | 1.2:+69216939 | None:intergenic |
TGGTGCACCCACCATGTTTC+AGG | 0.245589 | 1.2:-69214915 | MS.gene60585:CDS |
CGAATGAAGGATGATGAATT+TGG | 0.257196 | 1.2:+69219285 | None:intergenic |
TTGCCTGAGTTGGAAGGTTT+TGG | 0.257427 | 1.2:+69213980 | None:intergenic |
AAGAGTAGGAATACGCAAAA+TGG | 0.284264 | 1.2:+69217757 | None:intergenic |
GATAGGGATTTGAGTGTTGC+AGG | 0.304340 | 1.2:-69217842 | MS.gene60585:CDS |
CACTCGTAATATGTCTTGTT+TGG | 0.323205 | 1.2:-69218969 | MS.gene60585:CDS |
TCGATTATCTCAACGAATCT+TGG | 0.323561 | 1.2:-69219185 | MS.gene60585:CDS |
TCTAACAGTGTCTGCAGATA+TGG | 0.338378 | 1.2:-69214151 | MS.gene60585:intron |
TATGGCATACTTGGTTTGAT+AGG | 0.339877 | 1.2:-69217859 | MS.gene60585:CDS |
AGACTTATGGAGGTGGGTTA+TGG | 0.344088 | 1.2:-69217877 | MS.gene60585:CDS |
GCTTGCAACTATACGTCTTA+TGG | 0.358042 | 1.2:+69214892 | None:intergenic |
TTGTGAATCTCCGGATGATT+TGG | 0.367388 | 1.2:-69215449 | MS.gene60585:CDS |
CAATGGAAACGGATTGGGAT+TGG | 0.381883 | 1.2:+69219220 | None:intergenic |
AATTTGGTTTGAAACCTTCC+TGG | 0.386938 | 1.2:+69216955 | None:intergenic |
ATGGTAAATGTTCAGACTTA+TGG | 0.394816 | 1.2:-69217890 | MS.gene60585:CDS |
ATGATGAATTTGGGAGATTA+CGG | 0.401604 | 1.2:+69219295 | None:intergenic |
TAGGTCCAATACTCGCTTCT+GGG | 0.407232 | 1.2:-69213413 | MS.gene60585:CDS |
ATAGGTCCAATACTCGCTTC+TGG | 0.410477 | 1.2:-69213414 | MS.gene60585:CDS |
TGTTTGGTTGCTTTCGCCGT+TGG | 0.416471 | 1.2:-69218953 | MS.gene60585:CDS |
GTTAACAATGGAAACGGATT+GGG | 0.417308 | 1.2:+69219215 | None:intergenic |
AATGGAAACGGATTGGGATT+GGG | 0.417947 | 1.2:+69219221 | None:intergenic |
GAATGAAGGATGATGAATTT+GGG | 0.440583 | 1.2:+69219286 | None:intergenic |
TTCAAGTTATTGCGCATTGA+GGG | 0.445171 | 1.2:-69215485 | MS.gene60585:CDS |
GAGGTGGGTTATGGCATACT+TGG | 0.446649 | 1.2:-69217868 | MS.gene60585:CDS |
GAAGGCTTCTTCTTATATGA+TGG | 0.447361 | 1.2:-69217909 | MS.gene60585:CDS |
CCAATACTCGCTTCTGGGGT+TGG | 0.454012 | 1.2:-69213408 | MS.gene60585:CDS |
AAGACGTATAGTTGCAAGCT+TGG | 0.463174 | 1.2:-69214888 | MS.gene60585:CDS |
TCAGATTCTGCTCAAGGAGC+TGG | 0.464972 | 1.2:-69214935 | MS.gene60585:CDS |
CTACTCACTGTAGGAATTCG+TGG | 0.467627 | 1.2:-69213466 | MS.gene60585:intron |
CGTTAACAATGGAAACGGAT+TGG | 0.469284 | 1.2:+69219214 | None:intergenic |
ATGGCATACTTGGTTTGATA+GGG | 0.475833 | 1.2:-69217858 | MS.gene60585:CDS |
ACAAGTCCTTTCTGCAGCTC+TGG | 0.476527 | 1.2:+69214078 | None:intergenic |
TGAAGGTACGATGTGGGTAA+TGG | 0.478279 | 1.2:-69217998 | MS.gene60585:intron |
ACTATACGCCAATCATTTCT+CGG | 0.479951 | 1.2:-69214830 | MS.gene60585:intron |
CTCTTGCCATTCATCTTGAC+CGG | 0.486089 | 1.2:-69217739 | MS.gene60585:intron |
GAAGACACGTCGTCGAATGA+AGG | 0.486801 | 1.2:+69219272 | None:intergenic |
CAGTGGATGATGAGAAGCTT+TGG | 0.489869 | 1.2:+69216848 | None:intergenic |
AGTAACGTCCACCTGGTTTG+AGG | 0.492439 | 1.2:+69218996 | None:intergenic |
CAAAATTTGGATGAACTCCA+TGG | 0.496480 | 1.2:+69214127 | None:intergenic |
TGTTGACTCTTGTGAATCTC+CGG | 0.497372 | 1.2:-69215458 | MS.gene60585:CDS |
AGATTACGGTAACGAAGAAA+TGG | 0.498312 | 1.2:+69219309 | None:intergenic |
CCAACCCCAGAAGCGAGTAT+TGG | 0.498498 | 1.2:+69213408 | None:intergenic |
AGAGTAGGAATACGCAAAAT+GGG | 0.505031 | 1.2:+69217758 | None:intergenic |
CTTCAAGTTATTGCGCATTG+AGG | 0.506033 | 1.2:-69215486 | MS.gene60585:CDS |
ATGGTATACCGAGAAATGAT+TGG | 0.506590 | 1.2:+69214822 | None:intergenic |
GATACTCAACCTAGCTGCCT+TGG | 0.507943 | 1.2:-69215556 | MS.gene60585:CDS |
TTGCTCAACTTTCAATGCAC+AGG | 0.508431 | 1.2:-69213362 | MS.gene60585:intron |
GCAGTATAAGAGAAATATGT+GGG | 0.509854 | 1.2:-69212688 | MS.gene60585:intron |
TTCTTAATGAAAATGAAGAA+TGG | 0.509917 | 1.2:-69219021 | MS.gene60585:CDS |
TGGCTAGCGAACAAGCGATT+CGG | 0.514344 | 1.2:-69215429 | MS.gene60585:CDS |
TAGAGAGGAATTGCCTGAGT+TGG | 0.517382 | 1.2:+69213970 | None:intergenic |
TGGACTCATTTCCACGCCAC+AGG | 0.517508 | 1.2:-69219165 | MS.gene60585:intron |
TTCTGGGGTTGGCATCCGAA+CGG | 0.519284 | 1.2:-69213397 | MS.gene60585:CDS |
ACTCAACCTAGCTGCCTTGG+AGG | 0.522687 | 1.2:-69215553 | MS.gene60585:CDS |
AGAAGCGAGTATTGGACCTA+TGG | 0.522950 | 1.2:+69213416 | None:intergenic |
AAACGACAATTAATCGCAGC+TGG | 0.525194 | 1.2:-69219052 | MS.gene60585:CDS |
TCATCATCCACTGCTTATGC+AGG | 0.526925 | 1.2:-69216838 | MS.gene60585:intron |
CAATTCCACAGTCAACCGTT+CGG | 0.533344 | 1.2:+69213382 | None:intergenic |
AATCCAAAACCTTCCAACTC+AGG | 0.535938 | 1.2:-69213983 | MS.gene60585:intron |
TTCCACTGGTAGCATAGCGC+TGG | 0.536045 | 1.2:+69214037 | None:intergenic |
GTCCTTTCTGCAGCTCTGGT+CGG | 0.536358 | 1.2:+69214082 | None:intergenic |
ATAGTACCGGTCAAGATGAA+TGG | 0.542404 | 1.2:+69217733 | None:intergenic |
TTTGCACCTCCAAGGCAGCT+AGG | 0.544081 | 1.2:+69215547 | None:intergenic |
AAGATCGTTAACAATGGAAA+CGG | 0.548215 | 1.2:+69219209 | None:intergenic |
TTGAGATTGAGTTTGAGTGA+TGG | 0.549193 | 1.2:+69219342 | None:intergenic |
TGCAGTATAAGAGAAATATG+TGG | 0.550194 | 1.2:-69212689 | MS.gene60585:intron |
GTGGGTTCAGATTCTGCTCA+AGG | 0.551999 | 1.2:-69214941 | MS.gene60585:CDS |
GTTAGAAATGACATGGGATG+CGG | 0.553592 | 1.2:-69213444 | MS.gene60585:CDS |
GCAAATAACTATGTTGGTGA+AGG | 0.554402 | 1.2:-69214866 | MS.gene60585:CDS |
AATGTTCAGACTTATGGAGG+TGG | 0.554687 | 1.2:-69217884 | MS.gene60585:CDS |
ATTGTTTAGCACAGTGAACC+AGG | 0.556386 | 1.2:-69216973 | MS.gene60585:intron |
TAACGAAGAAATGGTGATGA+TGG | 0.557854 | 1.2:+69219318 | None:intergenic |
TCGAGTTTCATCGAGAGTAA+AGG | 0.562438 | 1.2:+69216915 | None:intergenic |
GAGGAATTGCCTGAGTTGGA+AGG | 0.571426 | 1.2:+69213974 | None:intergenic |
GCCGAAAACAGCGTCAGTGA+AGG | 0.571596 | 1.2:-69217927 | MS.gene60585:CDS |
TGTTCGCTAGCCAAATCATC+CGG | 0.572626 | 1.2:+69215439 | None:intergenic |
AAGAAGAGATGTGATTCCAC+TGG | 0.575695 | 1.2:+69214023 | None:intergenic |
CACCGACCAGAGCTGCAGAA+AGG | 0.578876 | 1.2:-69214084 | MS.gene60585:CDS |
ATGGGATGCGGATCAACCAT+AGG | 0.581725 | 1.2:-69213432 | MS.gene60585:CDS |
ATTCATTGTTTGCACCTCCA+AGG | 0.583178 | 1.2:+69215539 | None:intergenic |
ACGTCTTATGGCCTGAAACA+TGG | 0.587160 | 1.2:+69214904 | None:intergenic |
GGTTGCTCTGTTTGACAATG+AGG | 0.587175 | 1.2:-69215404 | MS.gene60585:CDS |
TTCGGCTTCAGTTTCAGACA+TGG | 0.589778 | 1.2:+69217944 | None:intergenic |
TGTTGTTGAAGGTACGATGT+GGG | 0.589808 | 1.2:-69218004 | MS.gene60585:intron |
GTGAAGAAGTAACGTCCACC+TGG | 0.592016 | 1.2:+69218989 | None:intergenic |
ATGTTCAGACTTATGGAGGT+GGG | 0.592042 | 1.2:-69217883 | MS.gene60585:CDS |
ATTCGTGGTTAGAAATGACA+TGG | 0.593807 | 1.2:-69213451 | MS.gene60585:CDS |
GTGTCTGCAGATATGGCCCA+TGG | 0.599082 | 1.2:-69214144 | MS.gene60585:CDS |
CTTTCTGCAGCTCTGGTCGG+TGG | 0.600372 | 1.2:+69214085 | None:intergenic |
TCAAGATGAATGGCAAGAGT+AGG | 0.611001 | 1.2:+69217743 | None:intergenic |
TTTAGCACAGTGAACCAGGA+AGG | 0.619667 | 1.2:-69216969 | MS.gene60585:intron |
ATCGAGAAGATCGTTAACAA+TGG | 0.623163 | 1.2:+69219203 | None:intergenic |
AAAATTTGGATGAACTCCAT+GGG | 0.626689 | 1.2:+69214128 | None:intergenic |
AGCTTGGCAAATAACTATGT+TGG | 0.628527 | 1.2:-69214872 | MS.gene60585:CDS |
TTGTTGTTGAAGGTACGATG+TGG | 0.636225 | 1.2:-69218005 | MS.gene60585:intron |
AGGTCCAATACTCGCTTCTG+GGG | 0.638373 | 1.2:-69213412 | MS.gene60585:CDS |
AACCAGCGCTATGCTACCAG+TGG | 0.640942 | 1.2:-69214039 | MS.gene60585:CDS |
GTAAATGTTCAGACTTATGG+AGG | 0.649065 | 1.2:-69217887 | MS.gene60585:CDS |
CATAGACAAGATGCTGACTG+TGG | 0.652971 | 1.2:-69212606 | MS.gene60585:CDS |
TAGCGAACAAGCGATTCGGA+TGG | 0.653246 | 1.2:-69215425 | MS.gene60585:CDS |
GGCATCCGAACGGTTGACTG+TGG | 0.654138 | 1.2:-69213387 | MS.gene60585:CDS |
TGCTCTGTTTGACAATGAGG+AGG | 0.654956 | 1.2:-69215401 | MS.gene60585:intron |
GAAGAATGGAACCTCAAACC+AGG | 0.655104 | 1.2:-69219007 | MS.gene60585:CDS |
ATACGTACCTGCATAAGCAG+TGG | 0.663270 | 1.2:+69216831 | None:intergenic |
GAATGAAGGTACCTGTGGCG+TGG | 0.675955 | 1.2:+69219154 | None:intergenic |
TTTACTCTCGATGAAACTCG+AGG | 0.679371 | 1.2:-69216913 | MS.gene60585:CDS |
GAATGAAGAAGAAGAATGTG+TGG | 0.689122 | 1.2:+69219372 | None:intergenic |
CTTATGGCCTGAAACATGGT+GGG | 0.691940 | 1.2:+69214908 | None:intergenic |
TTCGTGGTTAGAAATGACAT+GGG | 0.700502 | 1.2:-69213450 | MS.gene60585:CDS |
GAATGGAACCTCAAACCAGG+TGG | 0.708230 | 1.2:-69219004 | MS.gene60585:CDS |
TCTTATGGCCTGAAACATGG+TGG | 0.711165 | 1.2:+69214907 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr1.2 | gene | 69212598 | 69219415 | 69212598 | ID=MS.gene60585 |
chr1.2 | mRNA | 69212598 | 69219415 | 69212598 | ID=MS.gene60585.t1;Parent=MS.gene60585 |
chr1.2 | exon | 69219166 | 69219415 | 69219166 | ID=MS.gene60585.t1.exon1;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69219166 | 69219415 | 69219166 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69218947 | 69219082 | 69218947 | ID=MS.gene60585.t1.exon2;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69218947 | 69219082 | 69218947 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69217740 | 69218015 | 69217740 | ID=MS.gene60585.t1.exon3;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69217740 | 69218015 | 69217740 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69216839 | 69216986 | 69216839 | ID=MS.gene60585.t1.exon4;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69216839 | 69216986 | 69216839 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69215402 | 69215641 | 69215402 | ID=MS.gene60585.t1.exon5;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69215402 | 69215641 | 69215402 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69214831 | 69214963 | 69214831 | ID=MS.gene60585.t1.exon6;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69214831 | 69214963 | 69214831 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69213984 | 69214165 | 69213984 | ID=MS.gene60585.t1.exon7;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69213984 | 69214165 | 69213984 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69213363 | 69213475 | 69213363 | ID=MS.gene60585.t1.exon8;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69213363 | 69213475 | 69213363 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
chr1.2 | exon | 69212598 | 69212706 | 69212598 | ID=MS.gene60585.t1.exon9;Parent=MS.gene60585.t1 |
chr1.2 | CDS | 69212598 | 69212706 | 69212598 | ID=cds.MS.gene60585.t1;Parent=MS.gene60585.t1 |
Gene Sequence |
Protein sequence |