AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene60760

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60760.t1 MTR_1g097250 98.333 360 6 0 1 360 1 360 0.0 741
MS.gene60760.t1 MTR_6g038640 69.859 355 107 0 6 360 7 361 0.0 540
MS.gene60760.t1 MTR_6g038650 66.479 355 114 1 6 360 7 356 0.0 508
MS.gene60760.t1 MTR_6g038390 61.864 354 135 0 6 359 9 362 2.06e-167 471
MS.gene60760.t1 MTR_6g038350 63.842 354 128 0 6 359 9 362 2.66e-162 458
MS.gene60760.t1 MTR_6g038370 63.842 354 128 0 6 359 9 362 2.66e-162 458
MS.gene60760.t1 MTR_6g066230 53.186 361 164 2 2 358 3 362 1.07e-140 404
MS.gene60760.t1 MTR_3g064900 49.300 357 177 2 6 358 7 363 1.65e-123 360
MS.gene60760.t1 MTR_6g038310 68.807 109 34 0 6 114 9 117 1.64e-41 142
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene60760.t1 AT4G09670 65.266 357 124 0 2 358 3 359 6.17e-179 501
MS.gene60760.t1 AT1G34200 58.239 352 135 3 6 356 7 347 2.11e-144 413
MS.gene60760.t1 AT1G66130 39.227 362 207 6 6 358 7 364 3.50e-84 260

Find 89 sgRNAs with CRISPR-Local

Find 143 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGATAATGGGGTTCAGTTTA+TGG 0.156726 1.2:+71580721 MS.gene60760:CDS
GAAGCAAATGCTTCTTATTC+TGG 0.175761 1.2:-71580640 None:intergenic
TAACAAAGATGGAGTTATAT+TGG 0.254546 1.2:+71581979 MS.gene60760:CDS
TAATCCTAGGACTGCTAAAA+TGG 0.281705 1.2:+71580763 MS.gene60760:CDS
TGGGAGCTTGTGAGGATAAT+GGG 0.292083 1.2:+71580708 MS.gene60760:CDS
CGGCGCAGATGGTGGCGTTT+GGG 0.299088 1.2:-71580448 None:intergenic
ACGGCGCAGATGGTGGCGTT+TGG 0.303690 1.2:-71580449 None:intergenic
CTGTTAAGTCTTCAATTCAT+AGG 0.306990 1.2:+71582365 MS.gene60760:CDS
GTGGGAGCTTGTGAGGATAA+TGG 0.326462 1.2:+71580707 MS.gene60760:CDS
CCTCTGACGGCGAAGGTATA+CGG 0.351312 1.2:+71580524 MS.gene60760:CDS
GGTTACAGAATTTGCTCGTT+TGG 0.359965 1.2:+71582261 MS.gene60760:CDS
TTGATGATCTTGTTACTTGT+TGG 0.364651 1.2:+71582182 MS.gene60760:CDS
ACAATGGATATAACAGCTAT+TGG 0.368508 1.2:+71582073 MS.gene60760:CDS
GATGCTTCATTCTCTTCATA+AGG 0.382468 1.2:-71582133 None:intergenic
GGCGTTTGGGGATAAGTTGA+TGG 0.387384 1.2:-71580435 None:intergenic
CGGTAGCTACGAAGCTCTAC+TGG 0.392878 1.2:+71580544 MS.gene60760:CDS
TTCAATGATCCGCACCGCTT+TGG 0.402052 1.2:+71580794 MS.gene60760:CDS
CCGCAAGAACGGCCCACTTA+AGG 0.402847 1.2:-71580616 None:intergenic
CGCAGCCTACTACTCCGATT+TGG 0.411175 1.2:-71580385 None:intergenic
ATTGTGGTGCATCACTATAT+TGG 0.411258 1.2:+71582002 MS.gene60760:CDS
CACTTAAGGTGCAAGCTTGT+AGG 0.413743 1.2:-71580602 None:intergenic
GTCGTAGTTGCGGCTGGCGA+CGG 0.414698 1.2:-71580468 None:intergenic
GGCTTTGTCGTAGTTGCGGC+TGG 0.417845 1.2:-71580474 None:intergenic
TCTTCCTCAAGAGGCTCTCT+TGG 0.424130 1.2:+71582240 MS.gene60760:CDS
ACCGCTTTCGCCGCCGCCAA+TGG 0.424701 1.2:+71580497 MS.gene60760:CDS
AAGCAAATGCTTCTTATTCT+GGG 0.425925 1.2:-71580639 None:intergenic
GAACCATGTGCGTCAAGATC+TGG 0.426777 1.2:-71581860 None:intergenic
CTTCACTCCTCAATCTGAAC+AGG 0.431496 1.2:-71582397 None:intergenic
ACAATTGGCCACTTCTTCTC+AGG 0.432874 1.2:-71582313 None:intergenic
ATAACAGCTATTGGAACAAA+AGG 0.438590 1.2:+71582082 MS.gene60760:CDS
CTACAAGCTTGCACCTTAAG+TGG 0.446430 1.2:+71580603 MS.gene60760:CDS
TCAGCAATATCCAGCGCAAC+GGG 0.447221 1.2:-71580671 None:intergenic
TGTTAAGTCTTCAATTCATA+GGG 0.452020 1.2:+71582366 MS.gene60760:CDS
TTGTGGTGCATCACTATATT+GGG 0.454615 1.2:+71582003 MS.gene60760:CDS
ATATACACAGCGTCCACATC+AGG 0.464643 1.2:-71580572 None:intergenic
TCTTGAGAAGCCCGTTGCGC+TGG 0.465138 1.2:+71580661 MS.gene60760:CDS
CTGATCCAAATCGGAGTAGT+AGG 0.471545 1.2:+71580380 MS.gene60760:CDS
AGAAGTGGCCAATTGTTAGT+AGG 0.484377 1.2:+71582320 MS.gene60760:CDS
ACTCCATCTTTGTTAAGCAC+TGG 0.485256 1.2:-71581971 None:intergenic
GCGGCTGGCGACGGCGCAGA+TGG 0.488870 1.2:-71580459 None:intergenic
TGCTGAGTTTGATGAAATTG+TGG 0.489673 1.2:+71580688 MS.gene60760:CDS
CCGCTTTGGTCAACTCAAAT+CGG 0.490151 1.2:+71580808 MS.gene60760:CDS
GCCATTGGCGGCGGCGAAAG+CGG 0.493499 1.2:-71580498 None:intergenic
ATCTGCAGCAAATGTAAAGC+AGG 0.496037 1.2:-71581804 None:intergenic
CTATGTGGGTTCATAATCCT+AGG 0.500670 1.2:+71580750 MS.gene60760:CDS
TACAGAATTTGCTCGTTTGG+TGG 0.508036 1.2:+71582264 MS.gene60760:CDS
GCTGGCGACGGCGCAGATGG+TGG 0.508895 1.2:-71580456 None:intergenic
TCAGAAGCACTGATCCAAAT+CGG 0.512386 1.2:+71580371 MS.gene60760:CDS
CTTGACGCACATGGTTCTCT+AGG 0.513476 1.2:+71581866 MS.gene60760:CDS
GCTGAGTTTGATGAAATTGT+GGG 0.524578 1.2:+71580689 MS.gene60760:CDS
CCTTAAGTGGGCCGTTCTTG+CGG 0.525534 1.2:+71580616 MS.gene60760:CDS
ACAGAATTTGCTCGTTTGGT+GGG 0.526034 1.2:+71582265 MS.gene60760:CDS
CGTCAGAGGGTAGCCATTGG+CGG 0.528871 1.2:-71580510 None:intergenic
CATGGTTCTCTAGGTGATGC+AGG 0.528921 1.2:+71581875 MS.gene60760:CDS
TTTCTTAGCAAACTTGACAA+TGG 0.530527 1.2:+71582057 MS.gene60760:CDS
GGCGCAGATGGTGGCGTTTG+GGG 0.530549 1.2:-71580447 None:intergenic
AGGTGCAAGCTTGTAGGAAG+TGG 0.532209 1.2:-71580596 None:intergenic
ATTGGCGGCGGCGAAAGCGG+TGG 0.533305 1.2:-71580495 None:intergenic
CCGTATACCTTCGCCGTCAG+AGG 0.533381 1.2:-71580524 None:intergenic
GTTTATGGATAATACTATGT+GGG 0.534341 1.2:+71580736 MS.gene60760:CDS
CTTATTCTGGGCCGCAAGAA+CGG 0.540934 1.2:-71580627 None:intergenic
GTTCGTAGTTGGCAGCTAAG+AGG 0.542085 1.2:-71581919 None:intergenic
CAGAGGGTAGCCATTGGCGG+CGG 0.547709 1.2:-71580507 None:intergenic
AGAAACTTTACGAGCTATGT+CGG 0.548717 1.2:-71580408 None:intergenic
CGCCGTCAGAGGGTAGCCAT+TGG 0.556478 1.2:-71580513 None:intergenic
GTTCTCTAGGTGATGCAGGT+TGG 0.556860 1.2:+71581879 MS.gene60760:CDS
TACAAGCTTGCACCTTAAGT+GGG 0.557842 1.2:+71580604 MS.gene60760:CDS
AGTTTATGGATAATACTATG+TGG 0.557985 1.2:+71580735 MS.gene60760:CDS
ACTCTAAGCCTGAGAAGAAG+TGG 0.559686 1.2:+71582305 MS.gene60760:CDS
CGCCAATGGCTACCCTCTGA+CGG 0.561254 1.2:+71580511 MS.gene60760:CDS
CGGTGGCTTTGTCGTAGTTG+CGG 0.562152 1.2:-71580478 None:intergenic
CTCAGCAATATCCAGCGCAA+CGG 0.568452 1.2:-71580672 None:intergenic
GCATCACTATATTGGGAGGA+TGG 0.568538 1.2:+71582010 MS.gene60760:CDS
TAAAACTGATCTTCCTCAAG+AGG 0.573676 1.2:+71582231 MS.gene60760:CDS
GAACCAGTGCTTAACAAAGA+TGG 0.577418 1.2:+71581968 MS.gene60760:CDS
CGTATACCTTCGCCGTCAGA+GGG 0.578581 1.2:-71580523 None:intergenic
TGGCTACCCTCTGACGGCGA+AGG 0.599671 1.2:+71580517 MS.gene60760:CDS
TGAAATTGTGGGAGCTTGTG+AGG 0.599951 1.2:+71580700 MS.gene60760:CDS
GGGAGCTTGTGAGGATAATG+GGG 0.604851 1.2:+71580709 MS.gene60760:CDS
AAGCCAGATCTTGACGCACA+TGG 0.611601 1.2:+71581857 MS.gene60760:CDS
GTTAAGCACTGGTTCACGTG+AGG 0.613013 1.2:-71581960 None:intergenic
GATGGAGTTATATTGGATTG+TGG 0.629420 1.2:+71581986 MS.gene60760:CDS
GTTAAGTCTTCAATTCATAG+GGG 0.633153 1.2:+71582367 MS.gene60760:CDS
TTGAGTTGACCAAAGCGGTG+CGG 0.636462 1.2:-71580803 None:intergenic
GTAACCAAGAGAGCCTCTTG+AGG 0.645260 1.2:-71582244 None:intergenic
CCGATTTGAGTTGACCAAAG+CGG 0.657625 1.2:-71580808 None:intergenic
TATACACAGCGTCCACATCA+GGG 0.659580 1.2:-71580571 None:intergenic
TCTACTGGAAGACCCTGATG+TGG 0.699995 1.2:+71580559 MS.gene60760:CDS
TGGTGCATCACTATATTGGG+AGG 0.737696 1.2:+71582006 MS.gene60760:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAATAGTGAAAACAA+AGG + chr1.2:71581245-71581264 MS.gene60760:intron 15.0%
!! TACTTATTACTATACAAAAA+TGG - chr1.2:71581035-71581054 None:intergenic 15.0%
!!! TAAAATGATATTAAGTTGTT+CGG + chr1.2:71581485-71581504 MS.gene60760:intron 15.0%
!! ACTTGTTTACTTGTAAAATT+TGG + chr1.2:71581687-71581706 MS.gene60760:intron 20.0%
!! CAAAGCTTAACAAATTTATT+TGG - chr1.2:71580878-71580897 None:intergenic 20.0%
!! TAATTTCAATACTAGTGTAT+GGG - chr1.2:71580926-71580945 None:intergenic 20.0%
!!! ATTTTGAAATATTGATAGTG+TGG + chr1.2:71581638-71581657 MS.gene60760:intron 20.0%
!!! TTTTGAAATATTGATAGTGT+GGG + chr1.2:71581639-71581658 MS.gene60760:intron 20.0%
! AGTTTATGGATAATACTATG+TGG + chr1.2:71580735-71580754 MS.gene60760:CDS 25.0%
! GTAATTTCAATACTAGTGTA+TGG - chr1.2:71580927-71580946 None:intergenic 25.0%
! GTTTATGGATAATACTATGT+GGG + chr1.2:71580736-71580755 MS.gene60760:CDS 25.0%
! TAACAAAGATGGAGTTATAT+TGG + chr1.2:71581979-71581998 MS.gene60760:CDS 25.0%
! TGTTAAGTCTTCAATTCATA+GGG + chr1.2:71582366-71582385 MS.gene60760:CDS 25.0%
!! TTGTTACTTCAAAGATCATT+TGG - chr1.2:71581433-71581452 None:intergenic 25.0%
!!! GTTTTAACAGTACACTTAAT+TGG - chr1.2:71582217-71582236 None:intergenic 25.0%
AAGCAAATGCTTCTTATTCT+GGG - chr1.2:71580642-71580661 None:intergenic 30.0%
AATCAAATTTGTCGCTCTAT+TGG + chr1.2:71581459-71581478 MS.gene60760:intron 30.0%
ACAATGGATATAACAGCTAT+TGG + chr1.2:71582073-71582092 MS.gene60760:CDS 30.0%
AGAGAGAAAAGAGAAAATAG+AGG + chr1.2:71581203-71581222 MS.gene60760:intron 30.0%
ATAACAGCTATTGGAACAAA+AGG + chr1.2:71582082-71582101 MS.gene60760:CDS 30.0%
ATCAAATTTGTCGCTCTATT+GGG + chr1.2:71581460-71581479 MS.gene60760:intron 30.0%
ATGGTAGTAAGTACTCAAAT+TGG + chr1.2:71581348-71581367 MS.gene60760:intron 30.0%
CACCACTTATATCAGTAAAT+AGG - chr1.2:71581760-71581779 None:intergenic 30.0%
CTATTTACTGATATAAGTGG+TGG + chr1.2:71581758-71581777 MS.gene60760:intron 30.0%
CTGTTAAGTCTTCAATTCAT+AGG + chr1.2:71582365-71582384 MS.gene60760:CDS 30.0%
GAGAGAAAAGAGAAAATAGA+GGG + chr1.2:71581204-71581223 MS.gene60760:intron 30.0%
GTTAAGTCTTCAATTCATAG+GGG + chr1.2:71582367-71582386 MS.gene60760:CDS 30.0%
TGCCTATTTACTGATATAAG+TGG + chr1.2:71581755-71581774 MS.gene60760:intron 30.0%
TTTCTTAGCAAACTTGACAA+TGG + chr1.2:71582057-71582076 MS.gene60760:CDS 30.0%
! AAATTGGTTCTTGGATTTGT+AGG + chr1.2:71581364-71581383 MS.gene60760:intron 30.0%
! ATTTTCACCACTAGACTTTT+TGG + chr1.2:71581576-71581595 MS.gene60760:intron 30.0%
! TAAGTACTCAAATTGGTTCT+TGG + chr1.2:71581355-71581374 MS.gene60760:intron 30.0%
! TGTGTTTTCCTACTAACAAT+TGG - chr1.2:71582331-71582350 None:intergenic 30.0%
! TTGATGATCTTGTTACTTGT+TGG + chr1.2:71582182-71582201 MS.gene60760:CDS 30.0%
!! AATGAAGCATCTTTTCATGT+TGG + chr1.2:71582145-71582164 MS.gene60760:CDS 30.0%
AATGAAGGAACGTAAACATG+AGG + chr1.2:71581132-71581151 MS.gene60760:intron 35.0%
ACACAATTCGTAAGTAGGAT+CGG + chr1.2:71581161-71581180 MS.gene60760:intron 35.0%
ACACTCGATCTTTACTACAA+TGG + chr1.2:71581329-71581348 MS.gene60760:intron 35.0%
ACGTAACACAATTCGTAAGT+AGG + chr1.2:71581156-71581175 MS.gene60760:intron 35.0%
ACTTTGTCCAAAAAGTCTAG+TGG - chr1.2:71581586-71581605 None:intergenic 35.0%
AGAAACTTTACGAGCTATGT+CGG - chr1.2:71580411-71580430 None:intergenic 35.0%
ATTGTGGTGCATCACTATAT+TGG + chr1.2:71582002-71582021 MS.gene60760:CDS 35.0%
CCAAAAATAACAGTAGAGCT+AGG - chr1.2:71580851-71580870 None:intergenic 35.0%
GAAGCAAATGCTTCTTATTC+TGG - chr1.2:71580643-71580662 None:intergenic 35.0%
GACTGCAAAGTTTGATATGT+TGG + chr1.2:71581531-71581550 MS.gene60760:intron 35.0%
GATGCTTCATTCTCTTCATA+AGG - chr1.2:71582136-71582155 None:intergenic 35.0%
GATGGAGTTATATTGGATTG+TGG + chr1.2:71581986-71582005 MS.gene60760:CDS 35.0%
GCTGAGTTTGATGAAATTGT+GGG + chr1.2:71580689-71580708 MS.gene60760:CDS 35.0%
TAAAACTGATCTTCCTCAAG+AGG + chr1.2:71582231-71582250 MS.gene60760:CDS 35.0%
TAATCCTAGGACTGCTAAAA+TGG + chr1.2:71580763-71580782 MS.gene60760:CDS 35.0%
TAGAGCGACAAATTTGATTG+AGG - chr1.2:71581458-71581477 None:intergenic 35.0%
TCAAAGTCAAGATGTAGGAT+TGG + chr1.2:71581103-71581122 MS.gene60760:intron 35.0%
TCATGTTTACGTTCCTTCAT+TGG - chr1.2:71581133-71581152 None:intergenic 35.0%
TGCTGAGTTTGATGAAATTG+TGG + chr1.2:71580688-71580707 MS.gene60760:CDS 35.0%
TGTAGTCAAAGTCAAGATGT+AGG + chr1.2:71581098-71581117 MS.gene60760:intron 35.0%
TTGTAGTAAAGATCGAGTGT+TGG - chr1.2:71581329-71581348 None:intergenic 35.0%
TTGTGGTGCATCACTATATT+GGG + chr1.2:71582003-71582022 MS.gene60760:CDS 35.0%
!! ATTGATAGTGTGGGAGATTA+AGG + chr1.2:71581648-71581667 MS.gene60760:intron 35.0%
!!! CCTAGCTCTACTGTTATTTT+TGG + chr1.2:71580848-71580867 MS.gene60760:intron 35.0%
AATTCGTAAGTAGGATCGGT+AGG + chr1.2:71581165-71581184 MS.gene60760:intron 40.0%
ACTCCATCTTTGTTAAGCAC+TGG - chr1.2:71581974-71581993 None:intergenic 40.0%
AGAAGTGGCCAATTGTTAGT+AGG + chr1.2:71582320-71582339 MS.gene60760:CDS 40.0%
ATCTGCAGCAAATGTAAAGC+AGG - chr1.2:71581807-71581826 None:intergenic 40.0%
CTATGTGGGTTCATAATCCT+AGG + chr1.2:71580750-71580769 MS.gene60760:CDS 40.0%
CTGATATAAGTGGTGGCTTT+CGG + chr1.2:71581765-71581784 MS.gene60760:intron 40.0%
GAACCAGTGCTTAACAAAGA+TGG + chr1.2:71581968-71581987 MS.gene60760:CDS 40.0%
GTAACATCGAAGCATGATTG+AGG + chr1.2:71581282-71581301 MS.gene60760:intron 40.0%
TACAAGCTTGCACCTTAAGT+GGG + chr1.2:71580604-71580623 MS.gene60760:CDS 40.0%
TGATATAAGTGGTGGCTTTC+GGG + chr1.2:71581766-71581785 MS.gene60760:intron 40.0%
! ACAGAATTTGCTCGTTTGGT+GGG + chr1.2:71582265-71582284 MS.gene60760:CDS 40.0%
! AGTCAAGATGTAGGATTGGT+CGG + chr1.2:71581107-71581126 MS.gene60760:intron 40.0%
! GGTTACAGAATTTGCTCGTT+TGG + chr1.2:71582261-71582280 MS.gene60760:CDS 40.0%
! GTGAGGCTATCACTGTTTTA+GGG - chr1.2:71581946-71581965 None:intergenic 40.0%
! TACAGAATTTGCTCGTTTGG+TGG + chr1.2:71582264-71582283 MS.gene60760:CDS 40.0%
! TTTTGAGCCTGTTCAGATTG+AGG + chr1.2:71582390-71582409 MS.gene60760:CDS 40.0%
!! AAGCATGATTGAGGTGTTGT+GGG + chr1.2:71581291-71581310 MS.gene60760:intron 40.0%
!! GGATAATGGGGTTCAGTTTA+TGG + chr1.2:71580721-71580740 MS.gene60760:CDS 40.0%
!! TCAGAAGCACTGATCCAAAT+CGG + chr1.2:71580371-71580390 MS.gene60760:CDS 40.0%
!!! TGTTTTAGGGAGTTCGTAGT+TGG - chr1.2:71581933-71581952 None:intergenic 40.0%
ACAATTGGCCACTTCTTCTC+AGG - chr1.2:71582316-71582335 None:intergenic 45.0%
ACTCTAAGCCTGAGAAGAAG+TGG + chr1.2:71582305-71582324 MS.gene60760:CDS 45.0%
ATATACACAGCGTCCACATC+AGG - chr1.2:71580575-71580594 None:intergenic 45.0%
ATCATGCTTCGATGTTACGC+AGG - chr1.2:71581280-71581299 None:intergenic 45.0%
CACTTAAGGTGCAAGCTTGT+AGG - chr1.2:71580605-71580624 None:intergenic 45.0%
CCGCTTTGGTCAACTCAAAT+CGG + chr1.2:71580808-71580827 MS.gene60760:CDS 45.0%
CTACAAGCTTGCACCTTAAG+TGG + chr1.2:71580603-71580622 MS.gene60760:CDS 45.0%
CTGATCCAAATCGGAGTAGT+AGG + chr1.2:71580380-71580399 MS.gene60760:CDS 45.0%
GCATCACTATATTGGGAGGA+TGG + chr1.2:71582010-71582029 MS.gene60760:CDS 45.0%
TAGGCAATGAACATGCAGTC+AGG - chr1.2:71581741-71581760 None:intergenic 45.0%
TATACACAGCGTCCACATCA+GGG - chr1.2:71580574-71580593 None:intergenic 45.0%
TCATGCTTCGATGTTACGCA+GGG - chr1.2:71581279-71581298 None:intergenic 45.0%
TGAAATTGTGGGAGCTTGTG+AGG + chr1.2:71580700-71580719 MS.gene60760:CDS 45.0%
TGGGAGCTTGTGAGGATAAT+GGG + chr1.2:71580708-71580727 MS.gene60760:CDS 45.0%
TGGTGCATCACTATATTGGG+AGG + chr1.2:71582006-71582025 MS.gene60760:CDS 45.0%
! CGTGAGGCTATCACTGTTTT+AGG - chr1.2:71581947-71581966 None:intergenic 45.0%
!! CCGATTTGAGTTGACCAAAG+CGG - chr1.2:71580811-71580830 None:intergenic 45.0%
!! GAAGCATGATTGAGGTGTTG+TGG + chr1.2:71581290-71581309 MS.gene60760:intron 45.0%
!!! TGTGCCATTTTAGCAGTCCT+AGG - chr1.2:71580770-71580789 None:intergenic 45.0%
AAGCCAGATCTTGACGCACA+TGG + chr1.2:71581857-71581876 MS.gene60760:CDS 50.0%
AGGTGCAAGCTTGTAGGAAG+TGG - chr1.2:71580599-71580618 None:intergenic 50.0%
CATGGTTCTCTAGGTGATGC+AGG + chr1.2:71581875-71581894 MS.gene60760:CDS 50.0%
CTCAGCAATATCCAGCGCAA+CGG - chr1.2:71580675-71580694 None:intergenic 50.0%
CTTATTCTGGGCCGCAAGAA+CGG - chr1.2:71580630-71580649 None:intergenic 50.0%
CTTGACGCACATGGTTCTCT+AGG + chr1.2:71581866-71581885 MS.gene60760:CDS 50.0%
GAACCATGTGCGTCAAGATC+TGG - chr1.2:71581863-71581882 None:intergenic 50.0%
GGGAGCTTGTGAGGATAATG+GGG + chr1.2:71580709-71580728 MS.gene60760:CDS 50.0%
GTAACCAAGAGAGCCTCTTG+AGG - chr1.2:71582247-71582266 None:intergenic 50.0%
GTGGGAGCTTGTGAGGATAA+TGG + chr1.2:71580707-71580726 MS.gene60760:CDS 50.0%
GTTCGTAGTTGGCAGCTAAG+AGG - chr1.2:71581922-71581941 None:intergenic 50.0%
GTTCTCTAGGTGATGCAGGT+TGG + chr1.2:71581879-71581898 MS.gene60760:CDS 50.0%
TCAGCAATATCCAGCGCAAC+GGG - chr1.2:71580674-71580693 None:intergenic 50.0%
TCTACTGGAAGACCCTGATG+TGG + chr1.2:71580559-71580578 MS.gene60760:CDS 50.0%
TCTTCCTCAAGAGGCTCTCT+TGG + chr1.2:71582240-71582259 MS.gene60760:CDS 50.0%
TTCAATGATCCGCACCGCTT+TGG + chr1.2:71580794-71580813 MS.gene60760:CDS 50.0%
! GGCGTTTGGGGATAAGTTGA+TGG - chr1.2:71580438-71580457 None:intergenic 50.0%
!! GTTAAGCACTGGTTCACGTG+AGG - chr1.2:71581963-71581982 None:intergenic 50.0%
!! TAGGATTGGTCGGCCAATGA+AGG + chr1.2:71581117-71581136 MS.gene60760:intron 50.0%
!! TTGAGTTGACCAAAGCGGTG+CGG - chr1.2:71580806-71580825 None:intergenic 50.0%
CCTTAAGTGGGCCGTTCTTG+CGG + chr1.2:71580616-71580635 MS.gene60760:CDS 55.0%
CGCAGCCTACTACTCCGATT+TGG - chr1.2:71580388-71580407 None:intergenic 55.0%
CGGTAGCTACGAAGCTCTAC+TGG + chr1.2:71580544-71580563 MS.gene60760:CDS 55.0%
CGTATACCTTCGCCGTCAGA+GGG - chr1.2:71580526-71580545 None:intergenic 55.0%
! CCTCTGACGGCGAAGGTATA+CGG + chr1.2:71580524-71580543 MS.gene60760:CDS 55.0%
!! CGGTGGCTTTGTCGTAGTTG+CGG - chr1.2:71580481-71580500 None:intergenic 55.0%
CCGCAAGAACGGCCCACTTA+AGG - chr1.2:71580619-71580638 None:intergenic 60.0%
CCGTATACCTTCGCCGTCAG+AGG - chr1.2:71580527-71580546 None:intergenic 60.0%
CGCCAATGGCTACCCTCTGA+CGG + chr1.2:71580511-71580530 MS.gene60760:CDS 60.0%
CGTCAGAGGGTAGCCATTGG+CGG - chr1.2:71580513-71580532 None:intergenic 60.0%
TCTTGAGAAGCCCGTTGCGC+TGG + chr1.2:71580661-71580680 MS.gene60760:CDS 60.0%
TGGTGGCTTTCGGGCTGTAC+AGG + chr1.2:71581775-71581794 MS.gene60760:intron 60.0%
! GGCTTTGTCGTAGTTGCGGC+TGG - chr1.2:71580477-71580496 None:intergenic 60.0%
CAGAGGGTAGCCATTGGCGG+CGG - chr1.2:71580510-71580529 None:intergenic 65.0%
CGCCGTCAGAGGGTAGCCAT+TGG - chr1.2:71580516-71580535 None:intergenic 65.0%
GTCGTAGTTGCGGCTGGCGA+CGG - chr1.2:71580471-71580490 None:intergenic 65.0%
TGGCTACCCTCTGACGGCGA+AGG + chr1.2:71580517-71580536 MS.gene60760:CDS 65.0%
! ACGGCGCAGATGGTGGCGTT+TGG - chr1.2:71580452-71580471 None:intergenic 65.0%
! CGGCGCAGATGGTGGCGTTT+GGG - chr1.2:71580451-71580470 None:intergenic 65.0%
! GGCGCAGATGGTGGCGTTTG+GGG - chr1.2:71580450-71580469 None:intergenic 65.0%
ACCGCTTTCGCCGCCGCCAA+TGG + chr1.2:71580497-71580516 MS.gene60760:CDS 70.0%
ATTGGCGGCGGCGAAAGCGG+TGG - chr1.2:71580498-71580517 None:intergenic 70.0%
GCCATTGGCGGCGGCGAAAG+CGG - chr1.2:71580501-71580520 None:intergenic 70.0%
GCTGGCGACGGCGCAGATGG+TGG - chr1.2:71580459-71580478 None:intergenic 75.0%
! GCGGCTGGCGACGGCGCAGA+TGG - chr1.2:71580462-71580481 None:intergenic 80.0%


Chromosome Type Strat End Strand Name
chr1.2 gene 71580368 71582417 71580368 ID=MS.gene60760
chr1.2 mRNA 71580368 71582417 71580368 ID=MS.gene60760.t1;Parent=MS.gene60760
chr1.2 exon 71580368 71580829 71580368 ID=MS.gene60760.t1.exon1;Parent=MS.gene60760.t1
chr1.2 CDS 71580368 71580829 71580368 ID=cds.MS.gene60760.t1;Parent=MS.gene60760.t1
chr1.2 exon 71581797 71582417 71581797 ID=MS.gene60760.t1.exon2;Parent=MS.gene60760.t1
chr1.2 CDS 71581797 71582417 71581797 ID=cds.MS.gene60760.t1;Parent=MS.gene60760.t1
Gene Sequence

>MS.gene60760

ATGTCAGAAGCACTGATCCAAATCGGAGTAGTAGGCTGCGCCGACATAGCTCGTAAAGTTTCTCGCGCCATCAACTTATCCCCAAACGCCACCATCTGCGCCGTCGCCAGCCGCAACTACGACAAAGCCACCGCTTTCGCCGCCGCCAATGGCTACCCTCTGACGGCGAAGGTATACGGTAGCTACGAAGCTCTACTGGAAGACCCTGATGTGGACGCTGTGTATATGCCACTTCCTACAAGCTTGCACCTTAAGTGGGCCGTTCTTGCGGCCCAGAATAAGAAGCATTTGCTTCTTGAGAAGCCCGTTGCGCTGGATATTGCTGAGTTTGATGAAATTGTGGGAGCTTGTGAGGATAATGGGGTTCAGTTTATGGATAATACTATGTGGGTTCATAATCCTAGGACTGCTAAAATGGCACAGTTCTTCAATGATCCGCACCGCTTTGGTCAACTCAAATCGGTAATCTACATGTCAATTCCTAGCTCTACTGTTATTTTTGGATTGCCAAATAAATTTGTTAAGCTTTGACTTTCTCAAGTCTGAAAGTCTTATCCCATACACTAGTATTGAAATTACTTGTTATCTTACTTAATTCTTTGTCTTATACTAAGTAGTAAGTAGTGTATAGAACTTATGATAAATTTCTTTTTTCACTAAAGTACCATTTTTGTATAGTAATAAGTAAAATAGTGTTTGCATTTAAATAAAAAAGTGAAGTAGCAAGCAATGTAGTCAAAGTCAAGATGTAGGATTGGTCGGCCAATGAAGGAACGTAAACATGAGGAACGTAACACAATTCGTAAGTAGGATCGGTAGGTTGTTGATAGAGTTGAGAGAGAAAAGAGAAAATAGAGGGAAAACAGAGAAAACAAGAAAAAAAAATAGTGAAAACAAAGGAAAAGCAACCCTGCGTAACATCGAAGCATGATTGAGGTGTTGTGGGACGTAGTACGAACCAACACTCGATCTTTACTACAATGGTAGTAAGTACTCAAATTGGTTCTTGGATTTGTAGGACTATATCAATCTAGTATTCTAGTTAGTCACATTATCGATATTCCAAATGATCTTTGAAGTAACAAAACCTCAATCAAATTTGTCGCTCTATTGGGACTAAAATGATATTAAGTTGTTCGGTAAGTACAACTCAGATCATAAAAGACTGCAAAGTTTGATATGTTGGTACGTATTATTTAGTGTGTATGATTTTCACCACTAGACTTTTTGGACAAAGTTAATTAATATTTTTGTAATTATTCTAGAAATTATTTTGAAATATTGATAGTGTGGGAGATTAAGGACGAACTTGAGTGTTTACTTGTTTACTTGTAAAATTTGGAAAGTAGAGTTACATTGCATAAGAAAAACCTGACTGCATGTTCATTGCCTATTTACTGATATAAGTGGTGGCTTTCGGGCTGTACAGGTTCGCACCTGCTTTACATTTGCTGCAGATTCTGAATATCTAAAGAAAGACATTCGTGTGAAGCCAGATCTTGACGCACATGGTTCTCTAGGTGATGCAGGTTGGTATTGCATTCGTGCAATCCTCTTAGCTGCCAACTACGAACTCCCTAAAACAGTGATAGCCTCACGTGAACCAGTGCTTAACAAAGATGGAGTTATATTGGATTGTGGTGCATCACTATATTGGGAGGATGGTAAAGTAGCTACATTTCATTGCTCTTTCTTAGCAAACTTGACAATGGATATAACAGCTATTGGAACAAAAGGAACTCTTCATGTTCATGATTTTATTATTCCTTATGAAGAGAATGAAGCATCTTTTCATGTTGGTACTGAAACTAGCTTTGATGATCTTGTTACTTGTTGGTCTAAACAGCCAATTAAGTGTACTGTTAAAACTGATCTTCCTCAAGAGGCTCTCTTGGTTACAGAATTTGCTCGTTTGGTGGGTGAAATTAAATTTAGAAACTCTAAGCCTGAGAAGAAGTGGCCAATTGTTAGTAGGAAAACACAACTTGTGTTGAATGCTGTTAAGTCTTCAATTCATAGGGGTTTTGAGCCTGTTCAGATTGAGGAGTGA
Protein sequence

>MS.gene60760.t1

MSEALIQIGVVGCADIARKVSRAINLSPNATICAVASRNYDKATAFAAANGYPLTAKVYGSYEALLEDPDVDAVYMPLPTSLHLKWAVLAAQNKKHLLLEKPVALDIAEFDEIVGACEDNGVQFMDNTMWVHNPRTAKMAQFFNDPHRFGQLKSVRTCFTFAADSEYLKKDIRVKPDLDAHGSLGDAGWYCIRAILLAANYELPKTVIASREPVLNKDGVILDCGASLYWEDGKVATFHCSFLANLTMDITAIGTKGTLHVHDFIIPYEENEASFHVGTETSFDDLVTCWSKQPIKCTVKTDLPQEALLVTEFARLVGEIKFRNSKPEKKWPIVSRKTQLVLNAVKSSIHRGFEPVQIEE