Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60859.t1 | XP_003591788.2 | 98.4 | 437 | 7 | 0 | 1 | 437 | 1 | 437 | 4.50E-251 | 876.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60859.t1 | Q9C6M2 | 74.8 | 436 | 108 | 1 | 3 | 436 | 4 | 439 | 1.6e-196 | 686.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60859.t1 | G7I458 | 98.4 | 437 | 7 | 0 | 1 | 437 | 1 | 437 | 3.2e-251 | 876.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056856 | MS.gene60859 | 0.830523 | 2.80E-55 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60859.t1 | MTR_1g093020 | 98.398 | 437 | 7 | 0 | 1 | 437 | 1 | 437 | 0.0 | 886 |
| MS.gene60859.t1 | MTR_1g093020 | 98.272 | 405 | 7 | 0 | 1 | 405 | 1 | 405 | 0.0 | 824 |
| MS.gene60859.t1 | MTR_1g093030 | 86.957 | 437 | 57 | 0 | 1 | 437 | 1 | 437 | 0.0 | 754 |
| MS.gene60859.t1 | MTR_5g054730 | 84.862 | 436 | 65 | 1 | 3 | 437 | 4 | 439 | 0.0 | 740 |
| MS.gene60859.t1 | MTR_6g022790 | 58.986 | 434 | 174 | 1 | 8 | 437 | 22 | 455 | 0.0 | 564 |
| MS.gene60859.t1 | MTR_2g101920 | 60.000 | 435 | 169 | 2 | 8 | 437 | 27 | 461 | 0.0 | 548 |
| MS.gene60859.t1 | MTR_8g080120 | 55.427 | 433 | 189 | 1 | 9 | 437 | 4 | 436 | 0.0 | 531 |
| MS.gene60859.t1 | MTR_7g038910 | 63.527 | 414 | 151 | 0 | 24 | 437 | 30 | 443 | 0.0 | 531 |
| MS.gene60859.t1 | MTR_6g023065 | 59.259 | 432 | 171 | 2 | 10 | 437 | 33 | 463 | 0.0 | 514 |
| MS.gene60859.t1 | MTR_6g022780 | 60.047 | 428 | 169 | 2 | 11 | 437 | 2 | 428 | 1.79e-179 | 508 |
| MS.gene60859.t1 | MTR_4g103890 | 57.349 | 415 | 177 | 0 | 21 | 435 | 7 | 421 | 6.78e-177 | 501 |
| MS.gene60859.t1 | MTR_6g023075 | 59.346 | 428 | 172 | 2 | 11 | 437 | 2 | 428 | 8.49e-177 | 501 |
| MS.gene60859.t1 | MTR_7g038910 | 64.392 | 337 | 120 | 0 | 24 | 360 | 30 | 366 | 3.60e-167 | 475 |
| MS.gene60859.t1 | MTR_2g096830 | 58.645 | 428 | 175 | 2 | 11 | 437 | 2 | 428 | 5.99e-167 | 476 |
| MS.gene60859.t1 | MTR_7g038910 | 64.134 | 329 | 118 | 0 | 24 | 352 | 30 | 358 | 5.02e-162 | 461 |
| MS.gene60859.t1 | MTR_3g085820 | 56.180 | 356 | 150 | 1 | 10 | 359 | 13 | 368 | 1.77e-150 | 432 |
| MS.gene60859.t1 | MTR_2g096830 | 58.601 | 343 | 140 | 2 | 11 | 352 | 2 | 343 | 1.22e-141 | 409 |
| MS.gene60859.t1 | MTR_3g005740 | 52.506 | 419 | 193 | 3 | 24 | 437 | 52 | 469 | 2.18e-141 | 412 |
| MS.gene60859.t1 | MTR_0531s0020 | 58.991 | 317 | 126 | 1 | 17 | 329 | 38 | 354 | 1.31e-132 | 386 |
| MS.gene60859.t1 | MTR_2g012470 | 37.972 | 424 | 251 | 6 | 24 | 436 | 95 | 517 | 1.09e-92 | 290 |
| MS.gene60859.t1 | MTR_3g115090 | 38.028 | 426 | 250 | 5 | 25 | 437 | 85 | 509 | 3.63e-89 | 280 |
| MS.gene60859.t1 | MTR_5g023240 | 36.869 | 396 | 233 | 7 | 24 | 405 | 86 | 478 | 1.02e-77 | 250 |
| MS.gene60859.t1 | MTR_5g023260 | 34.965 | 429 | 261 | 7 | 24 | 437 | 107 | 532 | 2.88e-76 | 247 |
| MS.gene60859.t1 | MTR_4g075750 | 32.594 | 451 | 284 | 6 | 3 | 434 | 47 | 496 | 4.98e-70 | 230 |
| MS.gene60859.t1 | MTR_3g096800 | 30.968 | 465 | 282 | 11 | 3 | 434 | 13 | 471 | 1.48e-52 | 183 |
| MS.gene60859.t1 | MTR_8g099320 | 28.664 | 464 | 276 | 13 | 8 | 436 | 4 | 447 | 7.37e-50 | 176 |
| MS.gene60859.t1 | MTR_1g492640 | 29.604 | 429 | 275 | 11 | 26 | 437 | 61 | 479 | 8.94e-49 | 173 |
| MS.gene60859.t1 | MTR_4g055610 | 27.505 | 469 | 287 | 12 | 7 | 436 | 5 | 459 | 2.69e-48 | 171 |
| MS.gene60859.t1 | MTR_1g105980 | 28.761 | 452 | 271 | 10 | 25 | 434 | 23 | 465 | 8.44e-48 | 170 |
| MS.gene60859.t1 | MTR_1g105995 | 28.889 | 450 | 271 | 13 | 25 | 433 | 22 | 463 | 3.93e-47 | 169 |
| MS.gene60859.t1 | MTR_1g105990 | 30.396 | 454 | 260 | 16 | 25 | 432 | 22 | 465 | 7.81e-47 | 168 |
| MS.gene60859.t1 | MTR_3g110660 | 28.633 | 461 | 276 | 15 | 17 | 433 | 24 | 475 | 4.64e-46 | 166 |
| MS.gene60859.t1 | MTR_3g088475 | 28.510 | 463 | 279 | 13 | 9 | 429 | 17 | 469 | 8.89e-46 | 165 |
| MS.gene60859.t1 | MTR_8g094290 | 27.234 | 470 | 296 | 13 | 3 | 434 | 8 | 469 | 1.15e-45 | 165 |
| MS.gene60859.t1 | MTR_3g088455 | 28.017 | 464 | 279 | 13 | 9 | 429 | 17 | 468 | 3.94e-45 | 163 |
| MS.gene60859.t1 | MTR_1g007380 | 27.527 | 465 | 282 | 14 | 15 | 434 | 12 | 466 | 1.29e-44 | 162 |
| MS.gene60859.t1 | MTR_3g096830 | 28.375 | 437 | 262 | 14 | 3 | 401 | 6 | 429 | 1.51e-43 | 159 |
| MS.gene60859.t1 | MTR_5g096840 | 27.964 | 447 | 277 | 13 | 22 | 430 | 26 | 465 | 2.36e-43 | 158 |
| MS.gene60859.t1 | MTR_1g106000 | 27.511 | 458 | 278 | 12 | 25 | 434 | 16 | 467 | 3.07e-42 | 155 |
| MS.gene60859.t1 | MTR_3g461440 | 27.253 | 455 | 289 | 10 | 12 | 430 | 10 | 458 | 1.14e-41 | 154 |
| MS.gene60859.t1 | MTR_1g007240 | 27.056 | 462 | 284 | 14 | 17 | 437 | 5 | 454 | 1.80e-41 | 153 |
| MS.gene60859.t1 | MTR_4g073520 | 25.620 | 484 | 293 | 13 | 8 | 434 | 33 | 506 | 1.88e-41 | 154 |
| MS.gene60859.t1 | MTR_4g073520 | 25.620 | 484 | 293 | 13 | 8 | 434 | 33 | 506 | 2.12e-41 | 154 |
| MS.gene60859.t1 | MTR_1g070470 | 28.509 | 456 | 281 | 17 | 6 | 436 | 2 | 437 | 3.78e-41 | 152 |
| MS.gene60859.t1 | MTR_1g029750 | 29.017 | 417 | 248 | 11 | 25 | 401 | 36 | 444 | 1.33e-40 | 151 |
| MS.gene60859.t1 | MTR_1g007270 | 26.157 | 432 | 276 | 11 | 9 | 402 | 9 | 435 | 1.65e-40 | 150 |
| MS.gene60859.t1 | MTR_3g110430 | 26.637 | 443 | 277 | 10 | 2 | 402 | 32 | 468 | 2.83e-40 | 150 |
| MS.gene60859.t1 | MTR_3g096840 | 28.904 | 429 | 259 | 14 | 13 | 403 | 26 | 446 | 3.96e-40 | 150 |
| MS.gene60859.t1 | MTR_3g461470 | 28.571 | 427 | 261 | 11 | 12 | 401 | 10 | 429 | 2.98e-39 | 147 |
| MS.gene60859.t1 | MTR_3g461480 | 27.056 | 462 | 290 | 10 | 3 | 428 | 11 | 461 | 5.70e-39 | 146 |
| MS.gene60859.t1 | MTR_3g061390 | 28.169 | 426 | 268 | 10 | 12 | 403 | 10 | 431 | 6.55e-37 | 140 |
| MS.gene60859.t1 | MTR_5g096850 | 26.327 | 471 | 294 | 13 | 1 | 429 | 1 | 460 | 1.09e-36 | 140 |
| MS.gene60859.t1 | MTR_1g492640 | 30.252 | 357 | 224 | 10 | 96 | 437 | 1 | 347 | 2.97e-36 | 136 |
| MS.gene60859.t1 | MTR_3g461430 | 25.622 | 402 | 262 | 9 | 35 | 403 | 41 | 438 | 5.65e-34 | 133 |
| MS.gene60859.t1 | MTR_2g031750 | 27.765 | 425 | 258 | 14 | 18 | 401 | 2 | 418 | 1.45e-33 | 131 |
| MS.gene60859.t1 | MTR_3g110420 | 26.539 | 471 | 285 | 16 | 13 | 436 | 11 | 467 | 1.97e-33 | 131 |
| MS.gene60859.t1 | MTR_1g007180 | 26.588 | 425 | 263 | 12 | 18 | 401 | 2 | 418 | 9.04e-33 | 129 |
| MS.gene60859.t1 | MTR_3g088465 | 28.693 | 352 | 218 | 11 | 9 | 337 | 17 | 358 | 3.05e-32 | 127 |
| MS.gene60859.t1 | MTR_4g104510 | 25.193 | 389 | 278 | 8 | 52 | 436 | 68 | 447 | 1.20e-31 | 125 |
| MS.gene60859.t1 | MTR_4g104510 | 25.641 | 390 | 273 | 11 | 52 | 436 | 68 | 445 | 2.97e-31 | 124 |
| MS.gene60859.t1 | MTR_3g461440 | 27.815 | 302 | 193 | 5 | 152 | 430 | 22 | 321 | 7.35e-31 | 121 |
| MS.gene60859.t1 | MTR_1g492640 | 28.296 | 311 | 205 | 7 | 26 | 325 | 43 | 346 | 4.68e-30 | 120 |
| MS.gene60859.t1 | MTR_1g492640 | 28.296 | 311 | 205 | 7 | 26 | 325 | 61 | 364 | 7.84e-30 | 119 |
| MS.gene60859.t1 | MTR_3g110660 | 29.448 | 326 | 198 | 11 | 17 | 317 | 24 | 342 | 1.07e-29 | 119 |
| MS.gene60859.t1 | MTR_5g081630 | 25.385 | 390 | 276 | 10 | 52 | 436 | 1 | 380 | 1.67e-27 | 113 |
| MS.gene60859.t1 | MTR_3g085800 | 56.250 | 80 | 35 | 0 | 358 | 437 | 5 | 84 | 6.98e-26 | 100 |
| MS.gene60859.t1 | MTR_3g069960 | 27.248 | 367 | 240 | 12 | 81 | 436 | 30 | 380 | 8.57e-23 | 99.8 |
| MS.gene60859.t1 | MTR_3g069960 | 27.248 | 367 | 240 | 12 | 81 | 436 | 83 | 433 | 1.61e-22 | 99.8 |
| MS.gene60859.t1 | MTR_2g031750 | 27.817 | 284 | 175 | 9 | 143 | 401 | 73 | 351 | 1.72e-22 | 99.0 |
| MS.gene60859.t1 | MTR_3g110420 | 26.852 | 324 | 208 | 10 | 17 | 317 | 15 | 332 | 1.23e-20 | 92.8 |
| MS.gene60859.t1 | MTR_1g007180 | 25.333 | 300 | 195 | 7 | 162 | 436 | 74 | 369 | 2.97e-20 | 92.4 |
| MS.gene60859.t1 | MTR_3g465510 | 23.697 | 422 | 272 | 14 | 26 | 429 | 41 | 430 | 6.24e-19 | 89.0 |
| MS.gene60859.t1 | MTR_5g017200 | 29.134 | 254 | 147 | 9 | 16 | 249 | 20 | 260 | 5.49e-17 | 81.3 |
| MS.gene60859.t1 | MTR_3g465440 | 22.693 | 401 | 281 | 10 | 32 | 424 | 53 | 432 | 2.04e-16 | 82.4 |
| MS.gene60859.t1 | MTR_1g492640 | 25.263 | 190 | 139 | 2 | 26 | 213 | 43 | 231 | 4.41e-16 | 78.2 |
| MS.gene60859.t1 | MTR_1g492640 | 25.263 | 190 | 139 | 2 | 26 | 213 | 61 | 249 | 6.77e-16 | 78.2 |
| MS.gene60859.t1 | MTR_1g094620 | 23.888 | 427 | 293 | 14 | 13 | 431 | 138 | 540 | 5.62e-14 | 74.3 |
| MS.gene60859.t1 | MTR_1g094620 | 23.733 | 434 | 292 | 15 | 13 | 431 | 138 | 547 | 1.77e-12 | 69.7 |
| MS.gene60859.t1 | MTR_8g467180 | 22.500 | 400 | 267 | 17 | 11 | 396 | 2 | 372 | 3.14e-12 | 68.2 |
| MS.gene60859.t1 | MTR_4g055637 | 25.871 | 201 | 133 | 4 | 245 | 436 | 182 | 375 | 6.18e-12 | 67.4 |
| MS.gene60859.t1 | MTR_4g033275 | 34.694 | 98 | 53 | 2 | 314 | 404 | 4 | 97 | 1.02e-11 | 61.6 |
| MS.gene60859.t1 | MTR_8g465310 | 21.836 | 403 | 257 | 18 | 11 | 393 | 4 | 368 | 1.36e-11 | 66.2 |
| MS.gene60859.t1 | MTR_7g010790 | 22.051 | 390 | 265 | 12 | 15 | 391 | 28 | 391 | 1.60e-11 | 66.2 |
| MS.gene60859.t1 | MTR_7g010750 | 20.979 | 429 | 299 | 13 | 15 | 429 | 27 | 429 | 2.40e-11 | 65.9 |
| MS.gene60859.t1 | MTR_8g467190 | 22.248 | 436 | 296 | 18 | 11 | 432 | 2 | 408 | 3.06e-11 | 65.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene60859.t1 | AT1G25530 | 75.058 | 429 | 105 | 1 | 10 | 436 | 11 | 439 | 0.0 | 650 |
| MS.gene60859.t1 | AT5G40780 | 59.353 | 433 | 172 | 1 | 9 | 437 | 14 | 446 | 0.0 | 551 |
| MS.gene60859.t1 | AT1G48640 | 58.178 | 428 | 178 | 1 | 11 | 437 | 26 | 453 | 0.0 | 524 |
| MS.gene60859.t1 | AT5G40780 | 60.302 | 398 | 158 | 0 | 40 | 437 | 1 | 398 | 0.0 | 519 |
| MS.gene60859.t1 | AT5G40780 | 60.302 | 398 | 158 | 0 | 40 | 437 | 1 | 398 | 0.0 | 519 |
| MS.gene60859.t1 | AT1G67640 | 57.823 | 441 | 182 | 1 | 1 | 437 | 1 | 441 | 0.0 | 513 |
| MS.gene60859.t1 | AT1G24400 | 56.782 | 435 | 180 | 3 | 9 | 437 | 9 | 441 | 2.71e-180 | 510 |
| MS.gene60859.t1 | AT1G61270 | 55.172 | 406 | 180 | 1 | 24 | 427 | 33 | 438 | 6.87e-162 | 464 |
| MS.gene60859.t1 | AT1G71680 | 55.663 | 415 | 183 | 1 | 24 | 437 | 34 | 448 | 1.99e-155 | 447 |
| MS.gene60859.t1 | AT3G01760 | 53.902 | 410 | 184 | 3 | 24 | 429 | 31 | 439 | 5.17e-155 | 447 |
| MS.gene60859.t1 | AT1G71680 | 57.879 | 330 | 138 | 1 | 24 | 352 | 34 | 363 | 1.46e-134 | 391 |
| MS.gene60859.t1 | AT1G47670 | 37.264 | 424 | 254 | 5 | 24 | 436 | 93 | 515 | 4.89e-91 | 285 |
| MS.gene60859.t1 | AT4G35180 | 31.552 | 393 | 252 | 7 | 24 | 404 | 57 | 444 | 2.34e-54 | 188 |
| MS.gene60859.t1 | AT1G08230 | 29.812 | 426 | 278 | 8 | 26 | 436 | 29 | 448 | 1.38e-51 | 180 |
| MS.gene60859.t1 | AT1G58360 | 30.508 | 472 | 271 | 16 | 4 | 433 | 21 | 477 | 1.51e-49 | 176 |
| MS.gene60859.t1 | AT1G10010 | 28.541 | 466 | 283 | 14 | 10 | 433 | 12 | 469 | 1.77e-48 | 172 |
| MS.gene60859.t1 | AT1G10010 | 28.541 | 466 | 283 | 14 | 10 | 433 | 11 | 468 | 1.89e-48 | 172 |
| MS.gene60859.t1 | AT4G35180 | 34.470 | 264 | 169 | 3 | 24 | 285 | 57 | 318 | 4.93e-45 | 160 |
| MS.gene60859.t1 | AT5G41800 | 27.209 | 430 | 285 | 9 | 26 | 437 | 28 | 447 | 1.93e-44 | 161 |
| MS.gene60859.t1 | AT5G09220 | 27.623 | 467 | 282 | 13 | 13 | 434 | 32 | 487 | 5.11e-44 | 160 |
| MS.gene60859.t1 | AT1G44100 | 27.293 | 458 | 284 | 12 | 20 | 434 | 23 | 474 | 1.68e-42 | 156 |
| MS.gene60859.t1 | AT5G49630 | 28.333 | 480 | 274 | 15 | 1 | 427 | 7 | 469 | 6.26e-42 | 155 |
| MS.gene60859.t1 | AT5G63850 | 27.500 | 480 | 279 | 16 | 2 | 434 | 3 | 460 | 1.47e-40 | 150 |
| MS.gene60859.t1 | AT1G77380 | 27.316 | 421 | 267 | 10 | 17 | 401 | 20 | 437 | 2.20e-40 | 150 |
| MS.gene60859.t1 | AT5G23810 | 27.778 | 432 | 266 | 7 | 12 | 403 | 13 | 438 | 1.25e-39 | 148 |
| MS.gene60859.t1 | AT1G08230 | 29.096 | 354 | 232 | 7 | 96 | 436 | 1 | 348 | 2.39e-35 | 134 |
| MS.gene60859.t1 | AT1G08230 | 28.788 | 330 | 216 | 7 | 120 | 436 | 6 | 329 | 1.24e-30 | 120 |
| MS.gene60859.t1 | AT1G08230 | 28.788 | 330 | 216 | 7 | 120 | 436 | 6 | 329 | 1.24e-30 | 120 |
| MS.gene60859.t1 | AT1G08230 | 28.788 | 330 | 216 | 7 | 120 | 436 | 6 | 329 | 1.24e-30 | 120 |
| MS.gene60859.t1 | AT5G23810 | 29.248 | 359 | 189 | 12 | 12 | 330 | 13 | 346 | 5.23e-28 | 114 |
| MS.gene60859.t1 | AT3G55740 | 23.462 | 439 | 303 | 14 | 13 | 436 | 16 | 436 | 1.15e-22 | 100 |
| MS.gene60859.t1 | AT3G55740 | 23.929 | 397 | 273 | 12 | 52 | 436 | 1 | 380 | 1.16e-22 | 99.4 |
| MS.gene60859.t1 | AT3G55740 | 23.929 | 397 | 273 | 12 | 52 | 436 | 1 | 380 | 1.16e-22 | 99.4 |
| MS.gene60859.t1 | AT2G36590 | 25.064 | 391 | 269 | 14 | 28 | 408 | 29 | 405 | 1.59e-21 | 96.7 |
| MS.gene60859.t1 | AT2G39890 | 24.557 | 395 | 273 | 12 | 52 | 436 | 1 | 380 | 2.89e-21 | 95.5 |
| MS.gene60859.t1 | AT2G39890 | 24.365 | 394 | 275 | 11 | 52 | 436 | 60 | 439 | 4.58e-21 | 95.5 |
| MS.gene60859.t1 | AT2G39890 | 24.365 | 394 | 275 | 11 | 52 | 436 | 60 | 439 | 4.58e-21 | 95.5 |
| MS.gene60859.t1 | AT5G23810 | 29.020 | 255 | 144 | 10 | 12 | 240 | 13 | 256 | 3.96e-17 | 81.6 |
| MS.gene60859.t1 | AT5G15240 | 20.968 | 434 | 312 | 11 | 2 | 426 | 8 | 419 | 1.49e-14 | 75.5 |
| MS.gene60859.t1 | AT5G23810 | 29.949 | 197 | 113 | 8 | 12 | 190 | 13 | 202 | 7.10e-14 | 71.2 |
| MS.gene60859.t1 | AT5G23810 | 29.949 | 197 | 113 | 8 | 12 | 190 | 13 | 202 | 7.10e-14 | 71.2 |
| MS.gene60859.t1 | AT2G36590 | 26.599 | 297 | 198 | 12 | 28 | 317 | 29 | 312 | 5.03e-12 | 67.4 |
| MS.gene60859.t1 | AT3G28960 | 20.460 | 435 | 296 | 13 | 13 | 429 | 2 | 404 | 9.53e-11 | 63.9 |
| MS.gene60859.t1 | AT3G28960 | 20.460 | 435 | 296 | 13 | 13 | 429 | 2 | 404 | 9.53e-11 | 63.9 |
| MS.gene60859.t1 | AT3G28960 | 20.460 | 435 | 296 | 13 | 13 | 429 | 2 | 404 | 9.53e-11 | 63.9 |
| MS.gene60859.t1 | AT3G28960 | 20.460 | 435 | 296 | 13 | 13 | 429 | 2 | 404 | 9.53e-11 | 63.9 |
Find 101 sgRNAs with CRISPR-Local
Find 219 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTGGATTCTTTGGTGGATT+TGG | 0.204307 | 1.4:-73213885 | MS.gene60859:CDS |
| CACAAATCAAGCAATCTTAT+TGG | 0.207596 | 1.4:-73216238 | MS.gene60859:CDS |
| CACTCCTTCTCTACCTTCTA+AGG | 0.210993 | 1.4:-73216852 | MS.gene60859:intron |
| GGTGATCTACTTGGATTCTT+TGG | 0.230069 | 1.4:-73213894 | MS.gene60859:CDS |
| ATCATTGGATATTGGACTTT+TGG | 0.238047 | 1.4:-73214477 | MS.gene60859:CDS |
| CAAATCTCATTTGCATTTGC+TGG | 0.276520 | 1.4:-73214627 | MS.gene60859:CDS |
| ACAAGCGACAGAATTGAAAT+TGG | 0.277458 | 1.4:+73216172 | None:intergenic |
| CCATTCTTTGGTGATCTACT+TGG | 0.288263 | 1.4:-73213903 | MS.gene60859:CDS |
| ACATATTGCATTGATGAAAT+AGG | 0.289055 | 1.4:+73214515 | None:intergenic |
| CAGTTGATGCTGAATTTCTT+TGG | 0.293533 | 1.4:+73213704 | None:intergenic |
| ACAATCCATGCTCCAAGTTT+TGG | 0.304672 | 1.4:+73216365 | None:intergenic |
| TTCCACATTGCTATCTTTGA+TGG | 0.317361 | 1.4:+73214552 | None:intergenic |
| CACCATTTGGCTCGGCGAGC+GGG | 0.318292 | 1.4:+73216696 | None:intergenic |
| GCATCAACTGGTTCATCAAT+TGG | 0.320001 | 1.4:-73213691 | MS.gene60859:CDS |
| CAGTTGCAATCATTGGATAT+TGG | 0.324782 | 1.4:-73214485 | MS.gene60859:CDS |
| GACATTGTGTATATGGTTAT+TGG | 0.333982 | 1.4:-73216308 | MS.gene60859:CDS |
| CAGCAGCTGCGATGTCATTA+AGG | 0.342052 | 1.4:-73216139 | MS.gene60859:intron |
| GATCTTGGTAGACATGCTTT+TGG | 0.349503 | 1.4:-73216389 | MS.gene60859:CDS |
| TATTTCCCAGTTGCAATCAT+TGG | 0.357091 | 1.4:-73214492 | MS.gene60859:CDS |
| CAGCTACATGAATGTGTTCC+GGG | 0.364820 | 1.4:-73216434 | MS.gene60859:CDS |
| TGACTTGGAATTACCTTAGA+AGG | 0.368429 | 1.4:+73216839 | None:intergenic |
| CAATATCCAATGATTGCAAC+TGG | 0.369765 | 1.4:+73214486 | None:intergenic |
| TTCGATCGATATATTGATCT+TGG | 0.383966 | 1.4:-73216404 | MS.gene60859:CDS |
| TATTGCCTCTGCTAACTTGA+TGG | 0.384313 | 1.4:-73214403 | MS.gene60859:CDS |
| CCATATGCCATGGCATATCT+AGG | 0.384355 | 1.4:-73216618 | MS.gene60859:CDS |
| CCAGCTACATGAATGTGTTC+CGG | 0.385674 | 1.4:-73216435 | MS.gene60859:CDS |
| CATAGCTAACATTGTCAATT+CGG | 0.392756 | 1.4:+73214706 | None:intergenic |
| TATCGATCGAAACGTGTTCC+CGG | 0.393499 | 1.4:+73216416 | None:intergenic |
| CCTAGATATGCCATGGCATA+TGG | 0.396380 | 1.4:+73216618 | None:intergenic |
| TGGGTGTGACATTGTGTATA+TGG | 0.422852 | 1.4:-73216315 | MS.gene60859:CDS |
| TGTCTTCTATGTAGGGGTCC+AGG | 0.426937 | 1.4:-73216515 | MS.gene60859:intron |
| GATCTACTTGGATTCTTTGG+TGG | 0.436617 | 1.4:-73213891 | MS.gene60859:CDS |
| ATGGTATTCATCCATGTTGT+TGG | 0.447247 | 1.4:-73214384 | MS.gene60859:CDS |
| GTCTTCTATGTAGGGGTCCA+GGG | 0.447900 | 1.4:-73216514 | MS.gene60859:intron |
| CAAAGAAATTCAGCATCAAC+TGG | 0.459192 | 1.4:-73213703 | MS.gene60859:CDS |
| CATCAACTGGTTCATCAATT+GGG | 0.466386 | 1.4:-73213690 | MS.gene60859:intron |
| CCGGAACACATTCATGTAGC+TGG | 0.471386 | 1.4:+73216435 | None:intergenic |
| GCAGTTATTCAACTATAGCC+TGG | 0.481479 | 1.4:-73214749 | MS.gene60859:intron |
| AGCAACTGATTGTACAAGTT+GGG | 0.485034 | 1.4:-73216334 | MS.gene60859:CDS |
| CATAGGTGTATGTATTATGC+TGG | 0.485146 | 1.4:-73213578 | MS.gene60859:CDS |
| GAGAACACCGGCACCTATCA+TGG | 0.487053 | 1.4:+73216647 | None:intergenic |
| CCAAGTAGATCACCAAAGAA+TGG | 0.488148 | 1.4:+73213903 | None:intergenic |
| GAAAGTCGAGTACCACCATT+TGG | 0.492593 | 1.4:+73216683 | None:intergenic |
| TTCAGAGTCTTCAATGCACT+TGG | 0.497518 | 1.4:-73214651 | MS.gene60859:CDS |
| CCATGTTGTTGGTAGCTACC+AGG | 0.505264 | 1.4:-73214373 | MS.gene60859:intron |
| ACCCCGCTCGCCGAGCCAAA+TGG | 0.505335 | 1.4:-73216698 | MS.gene60859:CDS |
| TCTTGATGTTGTTACTATCA+TGG | 0.505997 | 1.4:-73216490 | MS.gene60859:CDS |
| CAAGCGACAGAATTGAAATT+GGG | 0.514261 | 1.4:+73216173 | None:intergenic |
| CACACGGTGACAGCCATGAT+AGG | 0.515627 | 1.4:-73216660 | MS.gene60859:CDS |
| TTTCAGGCTGGAATTTACAT+AGG | 0.516907 | 1.4:-73213595 | MS.gene60859:intron |
| ATTATCATCCACATTATGCT+AGG | 0.517258 | 1.4:+73213734 | None:intergenic |
| CAGCAACTGATTGTACAAGT+TGG | 0.521805 | 1.4:-73216335 | MS.gene60859:CDS |
| CCACCATTTGGCTCGGCGAG+CGG | 0.522493 | 1.4:+73216695 | None:intergenic |
| AATTGTAGCTTGAATTTCAA+GGG | 0.529094 | 1.4:+73214593 | None:intergenic |
| ATGCTGGCATCAACAGTTGG+TGG | 0.536115 | 1.4:-73213562 | MS.gene60859:CDS |
| GTAGCTCGATCTGCTTATGT+AGG | 0.537760 | 1.4:-73214047 | MS.gene60859:intron |
| CTTAGAAGGTAGAGAAGGAG+TGG | 0.541211 | 1.4:+73216853 | None:intergenic |
| ACCATTTGGCTCGGCGAGCG+GGG | 0.543022 | 1.4:+73216697 | None:intergenic |
| TTGGACCAAAACTTGGAGCA+TGG | 0.552103 | 1.4:-73216370 | MS.gene60859:CDS |
| GCAGAGGCAATAAGCCATGA+AGG | 0.552923 | 1.4:+73214414 | None:intergenic |
| GAGCCTTACAAAATATGAAG+TGG | 0.554960 | 1.4:+73213854 | None:intergenic |
| CATCAACAGTTGGTGGCTTG+AGG | 0.555996 | 1.4:-73213555 | MS.gene60859:CDS |
| TTCAGCTTCCTAGCATAATG+TGG | 0.559564 | 1.4:-73213742 | MS.gene60859:intron |
| TACAAGTCTAAGCGCTACAC+CGG | 0.559820 | 1.4:+73214067 | None:intergenic |
| GTGACAGCCATGATAGGTGC+CGG | 0.561879 | 1.4:-73216654 | MS.gene60859:CDS |
| GAATTGTAGCTTGAATTTCA+AGG | 0.566743 | 1.4:+73214592 | None:intergenic |
| ATATGGCAGGCTGAGAACAC+CGG | 0.571486 | 1.4:+73216635 | None:intergenic |
| CAGTTATTCAACTATAGCCT+GGG | 0.571690 | 1.4:-73214748 | MS.gene60859:CDS |
| AGTAACAACATCAAGATCCC+TGG | 0.572772 | 1.4:+73216497 | None:intergenic |
| AACTCAAGCAGAACTAAAAG+AGG | 0.577761 | 1.4:-73216730 | MS.gene60859:CDS |
| CGAAGATTGAACTTCCCTCC+CGG | 0.581202 | 1.4:-73214086 | MS.gene60859:CDS |
| GATATGCCATGGCATATGGC+AGG | 0.583697 | 1.4:+73216622 | None:intergenic |
| TTAGGTGTAGAAACTATAAG+TGG | 0.584367 | 1.4:+73213513 | None:intergenic |
| GAATTTCAAGGGTCACTGCA+TGG | 0.587325 | 1.4:+73214604 | None:intergenic |
| TCTCAGCCTGCCATATGCCA+TGG | 0.590092 | 1.4:-73216628 | MS.gene60859:CDS |
| ATTACCTTAGAAGGTAGAGA+AGG | 0.592632 | 1.4:+73216848 | None:intergenic |
| ATGCCATGGCATATCTAGGA+TGG | 0.592717 | 1.4:-73216614 | MS.gene60859:intron |
| GAAGTGTCTAAAGCAGTTTG+TGG | 0.595626 | 1.4:-73216282 | MS.gene60859:CDS |
| ATTGTGTATATGGTTATTGG+TGG | 0.601442 | 1.4:-73216305 | MS.gene60859:CDS |
| TCTAGATAAGCAAGCCACCC+AGG | 0.604949 | 1.4:+73214731 | None:intergenic |
| TCAAGCAGAACTAAAAGAGG+TGG | 0.605172 | 1.4:-73216727 | MS.gene60859:CDS |
| TCGAGTACCACCATTTGGCT+CGG | 0.611700 | 1.4:+73216688 | None:intergenic |
| AGCCTTACAAAATATGAAGT+GGG | 0.619496 | 1.4:+73213855 | None:intergenic |
| TTACCATCCTAGATATGCCA+TGG | 0.621396 | 1.4:+73216611 | None:intergenic |
| CCTGGTAGCTACCAACAACA+TGG | 0.622390 | 1.4:+73214373 | None:intergenic |
| CCGCTCGCCGAGCCAAATGG+TGG | 0.623958 | 1.4:-73216695 | MS.gene60859:CDS |
| TCAAAGATAGCAATGTGGAA+TGG | 0.633739 | 1.4:-73214549 | MS.gene60859:CDS |
| TGGGTGGCTTGCTTATCTAG+AGG | 0.637440 | 1.4:-73214729 | MS.gene60859:CDS |
| GTCTAAGCGCTACACCGGGA+GGG | 0.638037 | 1.4:+73214072 | None:intergenic |
| ACTTGTACAATCAGTTGCTG+AGG | 0.645642 | 1.4:+73216338 | None:intergenic |
| AATATCCAATGATTGCAACT+GGG | 0.647290 | 1.4:+73214487 | None:intergenic |
| TTATTCAACTATAGCCTGGG+TGG | 0.647749 | 1.4:-73214745 | MS.gene60859:CDS |
| TTGTGTATATGGTTATTGGT+GGG | 0.647932 | 1.4:-73216304 | MS.gene60859:CDS |
| CTATCATGGCTGTCACCGTG+TGG | 0.649580 | 1.4:+73216661 | None:intergenic |
| GTCTAACATTAAACACAATG+TGG | 0.662630 | 1.4:-73216466 | MS.gene60859:CDS |
| GTGGTACTCGACTTTCCACA+CGG | 0.666742 | 1.4:-73216676 | MS.gene60859:CDS |
| ACAAGTCTAAGCGCTACACC+GGG | 0.666755 | 1.4:+73214068 | None:intergenic |
| GAATACCATCAAGTTAGCAG+AGG | 0.672919 | 1.4:+73214398 | None:intergenic |
| ATTATGCTGGCATCAACAGT+TGG | 0.680435 | 1.4:-73213565 | MS.gene60859:CDS |
| AGTCTAAGCGCTACACCGGG+AGG | 0.683026 | 1.4:+73214071 | None:intergenic |
| AACCATCAAAGATAGCAATG+TGG | 0.720124 | 1.4:-73214554 | MS.gene60859:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACTAAAAAGTCAATTAT+TGG | - | chr1.4:73216595-73216614 | MS.gene60859:intron | 15.0% |
| !! | ATTAAATTATAGCTACAAAT+AGG | - | chr1.4:73215469-73215488 | MS.gene60859:intron | 15.0% |
| !!! | ACTTTCTATTTTTCTTTTTT+GGG | + | chr1.4:73214408-73214427 | None:intergenic | 15.0% |
| !!! | AGAATTATTATTTTCATGAT+AGG | - | chr1.4:73216398-73216417 | MS.gene60859:CDS | 15.0% |
| !!! | CTTAAATTTTCTTTTCTAAT+CGG | - | chr1.4:73216198-73216217 | MS.gene60859:CDS | 15.0% |
| !!! | TACTTTCTATTTTTCTTTTT+TGG | + | chr1.4:73214409-73214428 | None:intergenic | 15.0% |
| !!! | TATAATAAATTTTGTTAGCA+TGG | - | chr1.4:73213566-73213585 | MS.gene60859:CDS | 15.0% |
| !! | AAACAAGTCTTAAATTTCTT+TGG | + | chr1.4:73216724-73216743 | None:intergenic | 20.0% |
| !! | GTAAAGTAAATTGTTGAAAT+TGG | + | chr1.4:73215121-73215140 | None:intergenic | 20.0% |
| !! | GTTGGGTAAAAATATATTAT+AGG | - | chr1.4:73216220-73216239 | MS.gene60859:CDS | 20.0% |
| !! | TTAATTGTAGAGTTCTTATT+GGG | + | chr1.4:73215524-73215543 | None:intergenic | 20.0% |
| !! | TTTGATTATTTATTACTCCT+TGG | - | chr1.4:73214313-73214332 | MS.gene60859:intron | 20.0% |
| !!! | AATTAATCATTTCTAGTTGT+TGG | + | chr1.4:73214460-73214479 | None:intergenic | 20.0% |
| !!! | ACAATATTTTCACAAATTTG+AGG | + | chr1.4:73216052-73216071 | None:intergenic | 20.0% |
| !!! | ACTGGTTTTGTTAAAAAAAA+AGG | - | chr1.4:73215197-73215216 | MS.gene60859:intron | 20.0% |
| !!! | CTGGTTTTGTTAAAAAAAAA+GGG | - | chr1.4:73215198-73215217 | MS.gene60859:intron | 20.0% |
| !!! | GGTATCATAATATATTGATT+CGG | - | chr1.4:73214940-73214959 | MS.gene60859:intron | 20.0% |
| !!! | GTATCATAATATATTGATTC+GGG | - | chr1.4:73214941-73214960 | MS.gene60859:intron | 20.0% |
| !!! | TCTTATTGGATTTTGATTTT+TGG | - | chr1.4:73214149-73214168 | MS.gene60859:intron | 20.0% |
| !!! | TGACATTTTATATTCATACA+AGG | - | chr1.4:73214353-73214372 | MS.gene60859:intron | 20.0% |
| !!! | TGGTTTTGTTAAAAAAAAAG+GGG | - | chr1.4:73215199-73215218 | MS.gene60859:intron | 20.0% |
| !!! | TTGCTATTTCATAAATTTGA+AGG | - | chr1.4:73215228-73215247 | MS.gene60859:intron | 20.0% |
| !!! | TTTTAATAGTGTTTGTACTA+TGG | - | chr1.4:73214592-73214611 | MS.gene60859:CDS | 20.0% |
| !!! | TTTTAGTAGATATTTATGCT+GGG | - | chr1.4:73214659-73214678 | MS.gene60859:CDS | 20.0% |
| ! | AATTATCTTGTCTTCTATGT+AGG | - | chr1.4:73213850-73213869 | MS.gene60859:intron | 25.0% |
| ! | AATTGTAGCTTGAATTTCAA+GGG | + | chr1.4:73215783-73215802 | None:intergenic | 25.0% |
| ! | ACTTTACTAAAGAGATACTT+AGG | - | chr1.4:73215134-73215153 | MS.gene60859:intron | 25.0% |
| ! | ATTATATACACACAATGACT+TGG | + | chr1.4:73213552-73213571 | None:intergenic | 25.0% |
| ! | ATTATCTTGTCTTCTATGTA+GGG | - | chr1.4:73213851-73213870 | MS.gene60859:intron | 25.0% |
| ! | CTTAATTGTAGAGTTCTTAT+TGG | + | chr1.4:73215525-73215544 | None:intergenic | 25.0% |
| ! | TTAGAAGTAAGATTTAGTAG+AGG | - | chr1.4:73215405-73215424 | MS.gene60859:intron | 25.0% |
| !! | AACATTTTACAAGTGATTGT+GGG | + | chr1.4:73214760-73214779 | None:intergenic | 25.0% |
| !! | AATAAATCTGTTTTGCTGAT+TGG | + | chr1.4:73215701-73215720 | None:intergenic | 25.0% |
| !! | AATTTTCTTTTCTAATCGGT+TGG | - | chr1.4:73216202-73216221 | MS.gene60859:CDS | 25.0% |
| !! | ACATATTGCATTGATGAAAT+AGG | + | chr1.4:73215861-73215880 | None:intergenic | 25.0% |
| !! | AGCTTTTACATTATTCTTTG+GGG | - | chr1.4:73216439-73216458 | MS.gene60859:CDS | 25.0% |
| !! | ATAGTCATATCTTTTCAATC+TGG | + | chr1.4:73215037-73215056 | None:intergenic | 25.0% |
| !! | ATTTTCTTTTCTAATCGGTT+GGG | - | chr1.4:73216203-73216222 | MS.gene60859:CDS | 25.0% |
| !! | CAGCTTTTACATTATTCTTT+GGG | - | chr1.4:73216438-73216457 | MS.gene60859:CDS | 25.0% |
| !! | TAGTCATATCTTTTCAATCT+GGG | + | chr1.4:73215036-73215055 | None:intergenic | 25.0% |
| !! | TATAAAAAATTAGTTTCGCC+TGG | + | chr1.4:73216367-73216386 | None:intergenic | 25.0% |
| !! | TATATTCATACAAGGTACTA+GGG | - | chr1.4:73214361-73214380 | MS.gene60859:intron | 25.0% |
| !! | TCAGCTTTTACATTATTCTT+TGG | - | chr1.4:73216437-73216456 | MS.gene60859:CDS | 25.0% |
| !! | TTATATTCATACAAGGTACT+AGG | - | chr1.4:73214360-73214379 | MS.gene60859:intron | 25.0% |
| !! | TTTTCACAAATTTGAGGAAT+TGG | + | chr1.4:73216046-73216065 | None:intergenic | 25.0% |
| !!! | CATTTTGTGTCTTTTATTTC+AGG | - | chr1.4:73216762-73216781 | MS.gene60859:intron | 25.0% |
| !!! | GTTTTAGTAGATATTTATGC+TGG | - | chr1.4:73214658-73214677 | MS.gene60859:CDS | 25.0% |
| !!! | TATTGGATTTTGATTTTTGG+TGG | - | chr1.4:73214152-73214171 | MS.gene60859:intron | 25.0% |
| !!! | TTCATTAACTTCAGCTTTTT+TGG | - | chr1.4:73214493-73214512 | MS.gene60859:CDS | 25.0% |
| AATATCCAATGATTGCAACT+GGG | + | chr1.4:73215889-73215908 | None:intergenic | 30.0% | |
| AATTTGACATAAGCATAGAG+AGG | + | chr1.4:73216551-73216570 | None:intergenic | 30.0% | |
| AGCCTTACAAAATATGAAGT+GGG | + | chr1.4:73216521-73216540 | None:intergenic | 30.0% | |
| AGTAAGACTCAATTTCAACA+TGG | - | chr1.4:73214919-73214938 | MS.gene60859:intron | 30.0% | |
| ATTATCATCCACATTATGCT+AGG | + | chr1.4:73216642-73216661 | None:intergenic | 30.0% | |
| ATTGTGTATATGGTTATTGG+TGG | - | chr1.4:73214068-73214087 | MS.gene60859:CDS | 30.0% | |
| CACAAATCAAGCAATCTTAT+TGG | - | chr1.4:73214135-73214154 | MS.gene60859:intron | 30.0% | |
| CATAGCTAACATTGTCAATT+CGG | + | chr1.4:73215670-73215689 | None:intergenic | 30.0% | |
| CATTCTTTAATCTAAGAGAC+TGG | - | chr1.4:73215179-73215198 | MS.gene60859:intron | 30.0% | |
| CTTTGCAAAACTACTAAAAG+AGG | + | chr1.4:73215304-73215323 | None:intergenic | 30.0% | |
| GAAGATACTACTAGACATAT+AGG | + | chr1.4:73214271-73214290 | None:intergenic | 30.0% | |
| GAATTGTAGCTTGAATTTCA+AGG | + | chr1.4:73215784-73215803 | None:intergenic | 30.0% | |
| GACATTGTGTATATGGTTAT+TGG | - | chr1.4:73214065-73214084 | MS.gene60859:CDS | 30.0% | |
| GTCAAAACACCACAATATTA+AGG | + | chr1.4:73215603-73215622 | None:intergenic | 30.0% | |
| GTCTAACATTAAACACAATG+TGG | - | chr1.4:73213907-73213926 | MS.gene60859:CDS | 30.0% | |
| TCTTGATGTTGTTACTATCA+TGG | - | chr1.4:73213883-73213902 | MS.gene60859:CDS | 30.0% | |
| TTACTAAAGAGATACTTAGG+TGG | - | chr1.4:73215137-73215156 | MS.gene60859:intron | 30.0% | |
| TTAGGTGTAGAAACTATAAG+TGG | + | chr1.4:73216863-73216882 | None:intergenic | 30.0% | |
| TTATCTTGTCTTCTATGTAG+GGG | - | chr1.4:73213852-73213871 | MS.gene60859:intron | 30.0% | |
| TTCAATTGTCAATATGTGCA+GGG | + | chr1.4:73214871-73214890 | None:intergenic | 30.0% | |
| TTCAGTCCTCAAAATTGTAA+GGG | + | chr1.4:73215268-73215287 | None:intergenic | 30.0% | |
| TTCGATATGACAATTGATCA+AGG | - | chr1.4:73215432-73215451 | MS.gene60859:intron | 30.0% | |
| TTCGATCGATATATTGATCT+TGG | - | chr1.4:73213969-73213988 | MS.gene60859:intron | 30.0% | |
| TTGTGTATATGGTTATTGGT+GGG | - | chr1.4:73214069-73214088 | MS.gene60859:CDS | 30.0% | |
| TTTCAGTCCTCAAAATTGTA+AGG | + | chr1.4:73215269-73215288 | None:intergenic | 30.0% | |
| ! | ATCATTGGATATTGGACTTT+TGG | - | chr1.4:73215896-73215915 | MS.gene60859:intron | 30.0% |
| ! | CAACTATAGCCTTAATATTG+TGG | - | chr1.4:73215591-73215610 | MS.gene60859:intron | 30.0% |
| ! | GAACATTTTACAAGTGATTG+TGG | + | chr1.4:73214761-73214780 | None:intergenic | 30.0% |
| ! | TTGCATTAATAGTTGATACC+TGG | + | chr1.4:73216021-73216040 | None:intergenic | 30.0% |
| AACCATCAAAGATAGCAATG+TGG | - | chr1.4:73215819-73215838 | MS.gene60859:intron | 35.0% | |
| AACTCAAGCAGAACTAAAAG+AGG | - | chr1.4:73213643-73213662 | MS.gene60859:intron | 35.0% | |
| ACAAGCGACAGAATTGAAAT+TGG | + | chr1.4:73214204-73214223 | None:intergenic | 35.0% | |
| ACACTCATCACCTTATGAAT+CGG | - | chr1.4:73215074-73215093 | MS.gene60859:intron | 35.0% | |
| AGCAACTGATTGTACAAGTT+GGG | - | chr1.4:73214039-73214058 | MS.gene60859:intron | 35.0% | |
| ATGGTATTCATCCATGTTGT+TGG | - | chr1.4:73215989-73216008 | MS.gene60859:intron | 35.0% | |
| ATTACCTTAGAAGGTAGAGA+AGG | + | chr1.4:73213528-73213547 | None:intergenic | 35.0% | |
| CAAAGAAATTCAGCATCAAC+TGG | - | chr1.4:73216670-73216689 | MS.gene60859:CDS | 35.0% | |
| CAAATCTCATTTGCATTTGC+TGG | - | chr1.4:73215746-73215765 | MS.gene60859:intron | 35.0% | |
| CAAGCGACAGAATTGAAATT+GGG | + | chr1.4:73214203-73214222 | None:intergenic | 35.0% | |
| CAATATCCAATGATTGCAAC+TGG | + | chr1.4:73215890-73215909 | None:intergenic | 35.0% | |
| CAGTTATTCAACTATAGCCT+GGG | - | chr1.4:73215625-73215644 | MS.gene60859:intron | 35.0% | |
| CAGTTGCAATCATTGGATAT+TGG | - | chr1.4:73215888-73215907 | MS.gene60859:intron | 35.0% | |
| CATAGGTGTATGTATTATGC+TGG | - | chr1.4:73216795-73216814 | MS.gene60859:intron | 35.0% | |
| CTCTCAATCAAGTCAAAAAC+AGG | + | chr1.4:73216257-73216276 | None:intergenic | 35.0% | |
| GAAGCTGAGACAGAAAAAAA+TGG | + | chr1.4:73214181-73214200 | None:intergenic | 35.0% | |
| GAGCCTTACAAAATATGAAG+TGG | + | chr1.4:73216522-73216541 | None:intergenic | 35.0% | |
| GTTCAATTGTCAATATGTGC+AGG | + | chr1.4:73214872-73214891 | None:intergenic | 35.0% | |
| TAAAGAGATACTTAGGTGGA+GGG | - | chr1.4:73215141-73215160 | MS.gene60859:intron | 35.0% | |
| TATTTCCCAGTTGCAATCAT+TGG | - | chr1.4:73215881-73215900 | MS.gene60859:intron | 35.0% | |
| TCAAAGATAGCAATGTGGAA+TGG | - | chr1.4:73215824-73215843 | MS.gene60859:intron | 35.0% | |
| TTCCACATTGCTATCTTTGA+TGG | + | chr1.4:73215824-73215843 | None:intergenic | 35.0% | |
| TTTCAGGCTGGAATTTACAT+AGG | - | chr1.4:73216778-73216797 | MS.gene60859:intron | 35.0% | |
| TTTGTATGTTCCACAATTGC+AGG | - | chr1.4:73213619-73213638 | MS.gene60859:intron | 35.0% | |
| ! | AGTGATTGTGGGTTAAAATG+TGG | + | chr1.4:73214749-73214768 | None:intergenic | 35.0% |
| ! | CAGTTGATGCTGAATTTCTT+TGG | + | chr1.4:73216672-73216691 | None:intergenic | 35.0% |
| ! | CATCAACTGGTTCATCAATT+GGG | - | chr1.4:73216683-73216702 | MS.gene60859:CDS | 35.0% |
| ! | CTCCCACTTCATATTTTGTA+AGG | - | chr1.4:73216516-73216535 | MS.gene60859:intron | 35.0% |
| ! | TAAGCCATGAAGGTTTTTCA+AGG | + | chr1.4:73215952-73215971 | None:intergenic | 35.0% |
| ! | TGACTTGGAATTACCTTAGA+AGG | + | chr1.4:73213537-73213556 | None:intergenic | 35.0% |
| !! | AAGCCATGAAGGTTTTTCAA+GGG | + | chr1.4:73215951-73215970 | None:intergenic | 35.0% |
| !! | CCTTATGAATCGGTTTTGTA+CGG | - | chr1.4:73215084-73215103 | MS.gene60859:intron | 35.0% |
| !! | CGGTTTTGTACGGATTAATT+AGG | - | chr1.4:73215094-73215113 | MS.gene60859:intron | 35.0% |
| !! | GCTATCTTTGATGGTTTTTC+AGG | + | chr1.4:73215815-73215834 | None:intergenic | 35.0% |
| !! | TATCTTTTCAATCTGGGACT+TGG | + | chr1.4:73215030-73215049 | None:intergenic | 35.0% |
| !! | TTGTGTCTTTTATTTCAGGC+TGG | - | chr1.4:73216766-73216785 | MS.gene60859:intron | 35.0% |
| !!! | CTGTTTTTGACTTGATTGAG+AGG | - | chr1.4:73216255-73216274 | MS.gene60859:CDS | 35.0% |
| ACTAAAACCCTTGCAATCTC+AGG | + | chr1.4:73214527-73214546 | None:intergenic | 40.0% | |
| ACTCAGTTGTATGGTTGTTG+TGG | + | chr1.4:73214720-73214739 | None:intergenic | 40.0% | |
| ACTTGTACAATCAGTTGCTG+AGG | + | chr1.4:73214038-73214057 | None:intergenic | 40.0% | |
| AGGTAAGATGTCAAAACTCC+AGG | - | chr1.4:73216346-73216365 | MS.gene60859:CDS | 40.0% | |
| AGTAACAACATCAAGATCCC+TGG | + | chr1.4:73213879-73213898 | None:intergenic | 40.0% | |
| ATATGTGCAGGGAAGAATGA+TGG | + | chr1.4:73214860-73214879 | None:intergenic | 40.0% | |
| ATTATGCTGGCATCAACAGT+TGG | - | chr1.4:73216808-73216827 | MS.gene60859:intron | 40.0% | |
| CAGCAACTGATTGTACAAGT+TGG | - | chr1.4:73214038-73214057 | MS.gene60859:intron | 40.0% | |
| CCAAGTAGATCACCAAAGAA+TGG | + | chr1.4:73216473-73216492 | None:intergenic | 40.0% | |
| CTAAAACCCTTGCAATCTCA+GGG | + | chr1.4:73214526-73214545 | None:intergenic | 40.0% | |
| CTAAAGAGATACTTAGGTGG+AGG | - | chr1.4:73215140-73215159 | MS.gene60859:intron | 40.0% | |
| GAATACCATCAAGTTAGCAG+AGG | + | chr1.4:73215978-73215997 | None:intergenic | 40.0% | |
| GATCTACTTGGATTCTTTGG+TGG | - | chr1.4:73216482-73216501 | MS.gene60859:CDS | 40.0% | |
| GCAGTTATTCAACTATAGCC+TGG | - | chr1.4:73215624-73215643 | MS.gene60859:intron | 40.0% | |
| GGTGATCTACTTGGATTCTT+TGG | - | chr1.4:73216479-73216498 | MS.gene60859:CDS | 40.0% | |
| GTCCTCAAAATTGTAAGGGT+CGG | + | chr1.4:73215264-73215283 | None:intergenic | 40.0% | |
| GTGAAACAATTCAGAAGCAG+CGG | - | chr1.4:73215338-73215357 | MS.gene60859:intron | 40.0% | |
| TATTGCCTCTGCTAACTTGA+TGG | - | chr1.4:73215970-73215989 | MS.gene60859:intron | 40.0% | |
| TCAAGCAGAACTAAAAGAGG+TGG | - | chr1.4:73213646-73213665 | MS.gene60859:intron | 40.0% | |
| TGGGTGTGACATTGTGTATA+TGG | - | chr1.4:73214058-73214077 | MS.gene60859:CDS | 40.0% | |
| TGTCCCTTGAAAAACCTTCA+TGG | - | chr1.4:73215945-73215964 | MS.gene60859:intron | 40.0% | |
| TTACCATCCTAGATATGCCA+TGG | + | chr1.4:73213765-73213784 | None:intergenic | 40.0% | |
| TTATTCAACTATAGCCTGGG+TGG | - | chr1.4:73215628-73215647 | MS.gene60859:intron | 40.0% | |
| TTCAGAGTCTTCAATGCACT+TGG | - | chr1.4:73215722-73215741 | MS.gene60859:intron | 40.0% | |
| TTCAGCTTCCTAGCATAATG+TGG | - | chr1.4:73216631-73216650 | MS.gene60859:CDS | 40.0% | |
| TTGTAGCAGTACTAATGCGT+CGG | - | chr1.4:73215497-73215516 | MS.gene60859:intron | 40.0% | |
| ! | ACAATCCATGCTCCAAGTTT+TGG | + | chr1.4:73214011-73214030 | None:intergenic | 40.0% |
| ! | CATGCTTTTGGACCAAAACT+TGG | - | chr1.4:73213996-73214015 | MS.gene60859:intron | 40.0% |
| ! | CCATTCTTTGGTGATCTACT+TGG | - | chr1.4:73216470-73216489 | MS.gene60859:CDS | 40.0% |
| ! | CCGTACAAAACCGATTCATA+AGG | + | chr1.4:73215087-73215106 | None:intergenic | 40.0% |
| ! | GAAGTGTCTAAAGCAGTTTG+TGG | - | chr1.4:73214091-73214110 | MS.gene60859:CDS | 40.0% |
| ! | GATCTTGGTAGACATGCTTT+TGG | - | chr1.4:73213984-73214003 | MS.gene60859:intron | 40.0% |
| ! | GCATCAACTGGTTCATCAAT+TGG | - | chr1.4:73216682-73216701 | MS.gene60859:CDS | 40.0% |
| ! | TACCGACCCTTACAATTTTG+AGG | - | chr1.4:73215259-73215278 | MS.gene60859:intron | 40.0% |
| !! | AATGATGGACTCACACTTGA+AGG | + | chr1.4:73214845-73214864 | None:intergenic | 40.0% |
| !! | ATGATGGACTCACACTTGAA+GGG | + | chr1.4:73214844-73214863 | None:intergenic | 40.0% |
| !! | CTTGGATTCTTTGGTGGATT+TGG | - | chr1.4:73216488-73216507 | MS.gene60859:CDS | 40.0% |
| !!! | GATGGTTTTTCAGGTGTTGA+TGG | + | chr1.4:73215806-73215825 | None:intergenic | 40.0% |
| AGCAGCGGCAAATAAACAGT+TGG | - | chr1.4:73215353-73215372 | MS.gene60859:intron | 45.0% | |
| ATATTTATGCTGGGCCACGA+GGG | - | chr1.4:73214668-73214687 | MS.gene60859:CDS | 45.0% | |
| ATGCCATGGCATATCTAGGA+TGG | - | chr1.4:73213759-73213778 | MS.gene60859:intron | 45.0% | |
| CACTCCTTCTCTACCTTCTA+AGG | - | chr1.4:73213521-73213540 | MS.gene60859:CDS | 45.0% | |
| CAGCTACATGAATGTGTTCC+GGG | - | chr1.4:73213939-73213958 | MS.gene60859:intron | 45.0% | |
| CCAATGATGTTGGACGTGAA+GGG | - | chr1.4:73214989-73215008 | MS.gene60859:intron | 45.0% | |
| CCAGCTACATGAATGTGTTC+CGG | - | chr1.4:73213938-73213957 | MS.gene60859:intron | 45.0% | |
| CCATATGCCATGGCATATCT+AGG | - | chr1.4:73213755-73213774 | MS.gene60859:intron | 45.0% | |
| CCTAGATATGCCATGGCATA+TGG | + | chr1.4:73213758-73213777 | None:intergenic | 45.0% | |
| CCTTCACGTCCAACATCATT+GGG | + | chr1.4:73214991-73215010 | None:intergenic | 45.0% | |
| CTTAGAAGGTAGAGAAGGAG+TGG | + | chr1.4:73213523-73213542 | None:intergenic | 45.0% | |
| GAAAGTCGAGTACCACCATT+TGG | + | chr1.4:73213693-73213712 | None:intergenic | 45.0% | |
| GAATTTCAAGGGTCACTGCA+TGG | + | chr1.4:73215772-73215791 | None:intergenic | 45.0% | |
| GAGTTTCCCTGAGATTGCAA+GGG | - | chr1.4:73214517-73214536 | MS.gene60859:CDS | 45.0% | |
| GCTTGAGTTTCCTGCAATTG+TGG | + | chr1.4:73213632-73213651 | None:intergenic | 45.0% | |
| GTAGCTCGATCTGCTTATGT+AGG | - | chr1.4:73216326-73216345 | MS.gene60859:CDS | 45.0% | |
| TACAAGTCTAAGCGCTACAC+CGG | + | chr1.4:73216309-73216328 | None:intergenic | 45.0% | |
| TATCGATCGAAACGTGTTCC+CGG | + | chr1.4:73213960-73213979 | None:intergenic | 45.0% | |
| TGAGTTTCCCTGAGATTGCA+AGG | - | chr1.4:73214516-73214535 | MS.gene60859:CDS | 45.0% | |
| TGGTGTGCAACTCAGTTGTA+TGG | + | chr1.4:73214729-73214748 | None:intergenic | 45.0% | |
| TTGGACCAAAACTTGGAGCA+TGG | - | chr1.4:73214003-73214022 | MS.gene60859:intron | 45.0% | |
| TTGGTGTGTGGATATGTAGG+TGG | + | chr1.4:73214967-73214986 | None:intergenic | 45.0% | |
| !!! | GGGGTCACTTTTCCATTCTT+TGG | - | chr1.4:73216458-73216477 | MS.gene60859:CDS | 45.0% |
| !! | CATATAAAAAAAAAAAAAAA+AGG | - | chr1.4:73213824-73213843 | MS.gene60859:intron | 5.0% |
| ACAAGTCTAAGCGCTACACC+GGG | + | chr1.4:73216308-73216327 | None:intergenic | 50.0% | |
| ACGTCCAACATCATTGGGCT+TGG | + | chr1.4:73214986-73215005 | None:intergenic | 50.0% | |
| ATATGGCAGGCTGAGAACAC+CGG | + | chr1.4:73213741-73213760 | None:intergenic | 50.0% | |
| ATGCTGGCATCAACAGTTGG+TGG | - | chr1.4:73216811-73216830 | MS.gene60859:intron | 50.0% | |
| ATGGTTGTTGTGGCTCAACG+TGG | + | chr1.4:73214710-73214729 | None:intergenic | 50.0% | |
| CACACCAAGCCCAATGATGT+TGG | - | chr1.4:73214979-73214998 | MS.gene60859:intron | 50.0% | |
| CAGCAGCTGCGATGTCATTA+AGG | - | chr1.4:73214234-73214253 | MS.gene60859:intron | 50.0% | |
| CCCAATGATGTTGGACGTGA+AGG | - | chr1.4:73214988-73215007 | MS.gene60859:intron | 50.0% | |
| CCCTTCACGTCCAACATCAT+TGG | + | chr1.4:73214992-73215011 | None:intergenic | 50.0% | |
| CCGGAACACATTCATGTAGC+TGG | + | chr1.4:73213941-73213960 | None:intergenic | 50.0% | |
| CCTGGTAGCTACCAACAACA+TGG | + | chr1.4:73216003-73216022 | None:intergenic | 50.0% | |
| CGAAGATTGAACTTCCCTCC+CGG | - | chr1.4:73216287-73216306 | MS.gene60859:CDS | 50.0% | |
| CTCAACGTGGATGATCTTCC+GGG | + | chr1.4:73214697-73214716 | None:intergenic | 50.0% | |
| GATATGCCATGGCATATGGC+AGG | + | chr1.4:73213754-73213773 | None:intergenic | 50.0% | |
| GATATTTATGCTGGGCCACG+AGG | - | chr1.4:73214667-73214686 | MS.gene60859:CDS | 50.0% | |
| GCAGAGGCAATAAGCCATGA+AGG | + | chr1.4:73215962-73215981 | None:intergenic | 50.0% | |
| GCTCAACGTGGATGATCTTC+CGG | + | chr1.4:73214698-73214717 | None:intergenic | 50.0% | |
| GTCTTCTATGTAGGGGTCCA+GGG | - | chr1.4:73213859-73213878 | MS.gene60859:intron | 50.0% | |
| GTGGTACTCGACTTTCCACA+CGG | - | chr1.4:73213697-73213716 | MS.gene60859:CDS | 50.0% | |
| TCGAGTACCACCATTTGGCT+CGG | + | chr1.4:73213688-73213707 | None:intergenic | 50.0% | |
| TCTAGATAAGCAAGCCACCC+AGG | + | chr1.4:73215645-73215664 | None:intergenic | 50.0% | |
| TGTCTTCTATGTAGGGGTCC+AGG | - | chr1.4:73213858-73213877 | MS.gene60859:intron | 50.0% | |
| !! | ACATCATTGGGCTTGGTGTG+TGG | + | chr1.4:73214979-73214998 | None:intergenic | 50.0% |
| !! | CATCAACAGTTGGTGGCTTG+AGG | - | chr1.4:73216818-73216837 | MS.gene60859:intron | 50.0% |
| !! | CCATGTTGTTGGTAGCTACC+AGG | - | chr1.4:73216000-73216019 | MS.gene60859:intron | 50.0% |
| !! | GGCTTGGTGTGTGGATATGT+AGG | + | chr1.4:73214970-73214989 | None:intergenic | 50.0% |
| !! | TGGGTGGCTTGCTTATCTAG+AGG | - | chr1.4:73215644-73215663 | MS.gene60859:intron | 50.0% |
| AGCTAGCTCAGCAAGCACCA+AGG | + | chr1.4:73214333-73214352 | None:intergenic | 55.0% | |
| CACACGGTGACAGCCATGAT+AGG | - | chr1.4:73213713-73213732 | MS.gene60859:CDS | 55.0% | |
| CTATCATGGCTGTCACCGTG+TGG | + | chr1.4:73213715-73213734 | None:intergenic | 55.0% | |
| GAGAACACCGGCACCTATCA+TGG | + | chr1.4:73213729-73213748 | None:intergenic | 55.0% | |
| GTGACAGCCATGATAGGTGC+CGG | - | chr1.4:73213719-73213738 | MS.gene60859:CDS | 55.0% | |
| TCTCAGCCTGCCATATGCCA+TGG | - | chr1.4:73213745-73213764 | MS.gene60859:intron | 55.0% | |
| AGTCTAAGCGCTACACCGGG+AGG | + | chr1.4:73216305-73216324 | None:intergenic | 60.0% | |
| GTCTAAGCGCTACACCGGGA+GGG | + | chr1.4:73216304-73216323 | None:intergenic | 60.0% | |
| GATCTTCCGGGCTTCCCTCG+TGG | + | chr1.4:73214685-73214704 | None:intergenic | 65.0% | |
| !! | ACCATTTGGCTCGGCGAGCG+GGG | + | chr1.4:73213679-73213698 | None:intergenic | 65.0% |
| !! | CACCATTTGGCTCGGCGAGC+GGG | + | chr1.4:73213680-73213699 | None:intergenic | 65.0% |
| !! | CCACCATTTGGCTCGGCGAG+CGG | + | chr1.4:73213681-73213700 | None:intergenic | 65.0% |
| ACCCCGCTCGCCGAGCCAAA+TGG | - | chr1.4:73213675-73213694 | MS.gene60859:intron | 70.0% | |
| CCGCTCGCCGAGCCAAATGG+TGG | - | chr1.4:73213678-73213697 | MS.gene60859:intron | 70.0% | |
| GCTGGGCCACGAGGGAAGCC+CGG | - | chr1.4:73214676-73214695 | MS.gene60859:CDS | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1.4 | gene | 73213513 | 73216882 | 73213513 | ID=MS.gene60859 |
| chr1.4 | mRNA | 73213513 | 73216882 | 73213513 | ID=MS.gene60859.t1;Parent=MS.gene60859 |
| chr1.4 | exon | 73216853 | 73216882 | 73216853 | ID=MS.gene60859.t1.exon1;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73216853 | 73216882 | 73216853 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73216615 | 73216754 | 73216615 | ID=MS.gene60859.t1.exon2;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73216615 | 73216754 | 73216615 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73216140 | 73216523 | 73216140 | ID=MS.gene60859.t1.exon3;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73216140 | 73216523 | 73216140 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73214374 | 73214767 | 73214374 | ID=MS.gene60859.t1.exon4;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73214374 | 73214767 | 73214374 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73214048 | 73214153 | 73214048 | ID=MS.gene60859.t1.exon5;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73214048 | 73214153 | 73214048 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73213863 | 73213954 | 73213863 | ID=MS.gene60859.t1.exon6;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73213863 | 73213954 | 73213863 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73213691 | 73213759 | 73213691 | ID=MS.gene60859.t1.exon7;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73213691 | 73213759 | 73213691 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| chr1.4 | exon | 73213513 | 73213611 | 73213513 | ID=MS.gene60859.t1.exon8;Parent=MS.gene60859.t1 |
| chr1.4 | CDS | 73213513 | 73213611 | 73213513 | ID=cds.MS.gene60859.t1;Parent=MS.gene60859.t1 |
| Gene Sequence |
| Protein sequence |
