Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60932.t1 | XP_013464163.1 | 85.2 | 512 | 33 | 5 | 1 | 472 | 1 | 509 | 3.50E-233 | 817.4 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60932.t1 | Q9LTW4 | 41.2 | 388 | 204 | 10 | 96 | 471 | 85 | 460 | 1.4e-76 | 288.5 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60932.t1 | A0A072V9X6 | 85.2 | 512 | 33 | 5 | 1 | 472 | 1 | 509 | 2.5e-233 | 817.4 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene40949 | MS.gene60932 | PPI |
MS.gene049227 | MS.gene60932 | PPI |
MS.gene60932 | MS.gene013256 | PPI |
MS.gene60932 | MS.gene06341 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60932.t1 | MTR_2g063110 | 84.570 | 512 | 36 | 4 | 1 | 472 | 1 | 509 | 0.0 | 874 |
MS.gene60932.t1 | MTR_3g097150 | 28.661 | 478 | 282 | 21 | 14 | 472 | 10 | 447 | 3.44e-37 | 142 |
MS.gene60932.t1 | MTR_5g091130 | 28.571 | 476 | 286 | 16 | 39 | 471 | 89 | 553 | 1.35e-35 | 139 |
MS.gene60932.t1 | MTR_6g085010 | 28.140 | 430 | 257 | 18 | 61 | 471 | 95 | 491 | 1.24e-33 | 132 |
MS.gene60932.t1 | MTR_3g046300 | 28.731 | 449 | 273 | 15 | 63 | 472 | 19 | 459 | 1.43e-33 | 132 |
MS.gene60932.t1 | MTR_7g117430 | 28.194 | 454 | 272 | 18 | 36 | 471 | 67 | 484 | 4.92e-31 | 125 |
MS.gene60932.t1 | MTR_3g053710 | 27.968 | 379 | 231 | 13 | 113 | 471 | 110 | 466 | 9.08e-31 | 124 |
MS.gene60932.t1 | MTR_1g111350 | 28.989 | 376 | 220 | 15 | 112 | 471 | 123 | 467 | 2.88e-30 | 122 |
MS.gene60932.t1 | MTR_8g038280 | 27.311 | 476 | 279 | 19 | 15 | 471 | 6 | 433 | 5.65e-29 | 119 |
MS.gene60932.t1 | MTR_3g053980 | 28.647 | 377 | 227 | 14 | 112 | 471 | 134 | 485 | 9.00e-28 | 115 |
MS.gene60932.t1 | MTR_5g038360 | 30.194 | 361 | 227 | 14 | 121 | 471 | 89 | 434 | 2.27e-27 | 114 |
MS.gene60932.t1 | MTR_5g080890 | 29.363 | 361 | 233 | 12 | 119 | 471 | 85 | 431 | 8.49e-27 | 112 |
MS.gene60932.t1 | MTR_5g008150 | 29.600 | 375 | 218 | 16 | 118 | 471 | 61 | 410 | 3.28e-26 | 110 |
MS.gene60932.t1 | MTR_5g080960 | 29.086 | 361 | 234 | 12 | 119 | 471 | 85 | 431 | 3.84e-26 | 110 |
MS.gene60932.t1 | MTR_1g115210 | 27.233 | 459 | 280 | 18 | 30 | 471 | 65 | 486 | 4.48e-25 | 108 |
MS.gene60932.t1 | MTR_0024s0040 | 27.891 | 441 | 270 | 18 | 46 | 471 | 1 | 408 | 1.75e-24 | 105 |
MS.gene60932.t1 | MTR_8g096990 | 28.689 | 366 | 229 | 15 | 119 | 472 | 85 | 430 | 2.05e-24 | 105 |
MS.gene60932.t1 | MTR_5g008110 | 28.571 | 371 | 232 | 15 | 115 | 471 | 62 | 413 | 4.59e-24 | 104 |
MS.gene60932.t1 | MTR_1g039270 | 25.607 | 453 | 274 | 16 | 35 | 471 | 64 | 469 | 5.53e-24 | 104 |
MS.gene60932.t1 | MTR_5g044770 | 25.000 | 476 | 293 | 18 | 11 | 471 | 2 | 428 | 1.03e-23 | 103 |
MS.gene60932.t1 | MTR_2g084550 | 27.696 | 408 | 243 | 14 | 96 | 472 | 52 | 438 | 1.38e-23 | 103 |
MS.gene60932.t1 | MTR_0036s0050 | 27.778 | 450 | 276 | 20 | 36 | 472 | 21 | 434 | 7.72e-22 | 98.2 |
MS.gene60932.t1 | MTR_3g028120 | 27.793 | 367 | 234 | 16 | 119 | 471 | 87 | 436 | 8.13e-22 | 98.2 |
MS.gene60932.t1 | MTR_8g038250 | 26.882 | 372 | 212 | 14 | 119 | 472 | 85 | 414 | 9.67e-22 | 97.4 |
MS.gene60932.t1 | MTR_8g038310 | 24.622 | 463 | 250 | 19 | 37 | 472 | 22 | 412 | 1.32e-21 | 97.1 |
MS.gene60932.t1 | MTR_0036s0070 | 26.991 | 452 | 268 | 23 | 36 | 472 | 21 | 425 | 2.02e-21 | 96.7 |
MS.gene60932.t1 | MTR_0036s0110 | 28.150 | 373 | 223 | 17 | 119 | 471 | 93 | 440 | 2.22e-21 | 96.7 |
MS.gene60932.t1 | MTR_6g090290 | 26.703 | 367 | 238 | 13 | 119 | 471 | 85 | 434 | 1.02e-20 | 94.7 |
MS.gene60932.t1 | MTR_5g044570 | 26.682 | 431 | 246 | 20 | 62 | 471 | 28 | 409 | 1.54e-20 | 94.0 |
MS.gene60932.t1 | MTR_4g056420 | 23.873 | 377 | 253 | 9 | 117 | 472 | 74 | 437 | 3.31e-20 | 93.6 |
MS.gene60932.t1 | MTR_2g028190 | 26.579 | 380 | 241 | 16 | 110 | 471 | 92 | 451 | 3.57e-20 | 93.2 |
MS.gene60932.t1 | MTR_1g078240 | 23.892 | 406 | 267 | 14 | 92 | 472 | 42 | 430 | 1.26e-19 | 91.7 |
MS.gene60932.t1 | MTR_5g077850 | 28.358 | 402 | 226 | 17 | 100 | 472 | 70 | 438 | 1.32e-19 | 91.3 |
MS.gene60932.t1 | MTR_1g037630 | 24.892 | 462 | 275 | 20 | 26 | 467 | 15 | 424 | 2.71e-19 | 90.5 |
MS.gene60932.t1 | MTR_5g016260 | 25.000 | 372 | 235 | 11 | 119 | 472 | 87 | 432 | 7.08e-19 | 90.1 |
MS.gene60932.t1 | MTR_7g102750 | 25.255 | 392 | 252 | 14 | 106 | 472 | 66 | 441 | 7.28e-19 | 89.4 |
MS.gene60932.t1 | MTR_5g016260 | 25.000 | 372 | 235 | 11 | 119 | 472 | 87 | 432 | 8.38e-19 | 89.7 |
MS.gene60932.t1 | MTR_3g014290 | 27.200 | 375 | 225 | 17 | 110 | 467 | 69 | 412 | 1.03e-18 | 88.6 |
MS.gene60932.t1 | MTR_1g078240 | 23.833 | 407 | 267 | 15 | 92 | 472 | 42 | 431 | 2.65e-18 | 87.8 |
MS.gene60932.t1 | MTR_1g061940 | 24.816 | 407 | 265 | 13 | 92 | 472 | 54 | 445 | 2.93e-18 | 87.8 |
MS.gene60932.t1 | MTR_5g008090 | 29.129 | 333 | 193 | 16 | 155 | 471 | 7 | 312 | 3.56e-18 | 85.5 |
MS.gene60932.t1 | MTR_4g095270 | 24.798 | 371 | 235 | 12 | 119 | 471 | 79 | 423 | 3.88e-18 | 87.8 |
MS.gene60932.t1 | MTR_4g095270 | 24.798 | 371 | 235 | 12 | 119 | 471 | 79 | 423 | 4.13e-18 | 87.4 |
MS.gene60932.t1 | MTR_7g105850 | 26.055 | 403 | 222 | 17 | 119 | 471 | 89 | 465 | 6.28e-18 | 86.7 |
MS.gene60932.t1 | MTR_2g059490 | 27.747 | 364 | 238 | 14 | 120 | 471 | 58 | 408 | 1.03e-17 | 85.5 |
MS.gene60932.t1 | MTR_2g067830 | 23.650 | 389 | 250 | 15 | 107 | 471 | 39 | 404 | 1.47e-17 | 84.7 |
MS.gene60932.t1 | MTR_7g021510 | 25.412 | 425 | 260 | 19 | 81 | 472 | 34 | 434 | 2.87e-17 | 84.3 |
MS.gene60932.t1 | MTR_4g007740 | 27.381 | 420 | 253 | 21 | 73 | 472 | 91 | 478 | 3.99e-17 | 84.0 |
MS.gene60932.t1 | MTR_2g070430 | 27.882 | 373 | 234 | 18 | 121 | 468 | 88 | 450 | 5.81e-17 | 83.6 |
MS.gene60932.t1 | MTR_3g100500 | 26.984 | 378 | 235 | 15 | 110 | 472 | 87 | 438 | 1.28e-16 | 82.4 |
MS.gene60932.t1 | MTR_8g039540 | 26.225 | 408 | 244 | 18 | 86 | 467 | 53 | 429 | 4.60e-16 | 80.5 |
MS.gene60932.t1 | MTR_1g078240 | 26.712 | 292 | 180 | 12 | 92 | 366 | 42 | 316 | 4.87e-16 | 80.1 |
MS.gene60932.t1 | MTR_2g105300 | 24.096 | 332 | 216 | 12 | 151 | 469 | 72 | 380 | 1.11e-15 | 79.0 |
MS.gene60932.t1 | MTR_2g059460 | 25.205 | 365 | 241 | 13 | 120 | 471 | 59 | 404 | 1.15e-15 | 79.3 |
MS.gene60932.t1 | MTR_7g102750 | 26.050 | 357 | 224 | 13 | 106 | 437 | 66 | 407 | 1.18e-15 | 79.3 |
MS.gene60932.t1 | MTR_2g055840 | 25.266 | 376 | 240 | 14 | 121 | 471 | 14 | 373 | 1.33e-15 | 78.6 |
MS.gene60932.t1 | MTR_6g088760 | 25.758 | 330 | 220 | 13 | 119 | 436 | 87 | 403 | 1.57e-15 | 79.3 |
MS.gene60932.t1 | MTR_3g068000 | 24.679 | 389 | 230 | 19 | 123 | 471 | 76 | 441 | 5.12e-12 | 68.2 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene60932.t1 | AT3G12700 | 36.653 | 472 | 252 | 14 | 13 | 472 | 25 | 461 | 1.02e-93 | 291 |
MS.gene60932.t1 | AT3G25700 | 31.830 | 399 | 238 | 13 | 96 | 471 | 62 | 449 | 1.52e-45 | 165 |
MS.gene60932.t1 | AT3G18490 | 28.035 | 453 | 264 | 16 | 36 | 471 | 93 | 500 | 2.03e-38 | 146 |
MS.gene60932.t1 | AT1G25510 | 28.484 | 488 | 303 | 19 | 4 | 471 | 22 | 483 | 2.09e-35 | 137 |
MS.gene60932.t1 | AT1G01300 | 31.675 | 382 | 221 | 16 | 106 | 471 | 127 | 484 | 6.02e-34 | 133 |
MS.gene60932.t1 | AT5G10770 | 26.222 | 450 | 288 | 15 | 38 | 472 | 54 | 474 | 1.96e-31 | 126 |
MS.gene60932.t1 | AT2G03200 | 29.333 | 375 | 222 | 18 | 119 | 471 | 105 | 458 | 4.85e-31 | 125 |
MS.gene60932.t1 | AT3G59080 | 29.534 | 386 | 238 | 12 | 109 | 471 | 158 | 532 | 8.42e-31 | 125 |
MS.gene60932.t1 | AT2G42980 | 30.233 | 387 | 236 | 12 | 109 | 471 | 148 | 524 | 5.07e-30 | 123 |
MS.gene60932.t1 | AT3G61820 | 29.040 | 396 | 243 | 15 | 94 | 471 | 108 | 483 | 1.39e-29 | 121 |
MS.gene60932.t1 | AT1G64830 | 29.301 | 372 | 219 | 16 | 119 | 472 | 84 | 429 | 1.44e-29 | 120 |
MS.gene60932.t1 | AT5G33340 | 30.411 | 365 | 224 | 15 | 119 | 471 | 88 | 434 | 7.70e-29 | 118 |
MS.gene60932.t1 | AT5G10760 | 27.045 | 440 | 273 | 16 | 43 | 471 | 62 | 464 | 4.95e-26 | 110 |
MS.gene60932.t1 | AT3G59080 | 28.084 | 381 | 214 | 11 | 109 | 471 | 158 | 496 | 1.77e-24 | 106 |
MS.gene60932.t1 | AT2G35615 | 26.653 | 484 | 292 | 19 | 11 | 472 | 2 | 444 | 7.55e-24 | 104 |
MS.gene60932.t1 | AT1G09750 | 26.943 | 386 | 230 | 17 | 110 | 472 | 93 | 449 | 6.98e-23 | 101 |
MS.gene60932.t1 | AT1G08210 | 26.440 | 382 | 233 | 12 | 118 | 472 | 115 | 475 | 7.61e-23 | 101 |
MS.gene60932.t1 | AT1G08210 | 26.440 | 382 | 233 | 12 | 118 | 472 | 129 | 489 | 8.69e-23 | 101 |
MS.gene60932.t1 | AT1G08210 | 26.440 | 382 | 233 | 12 | 118 | 472 | 81 | 441 | 1.04e-22 | 101 |
MS.gene60932.t1 | AT5G22850 | 25.798 | 376 | 246 | 10 | 118 | 472 | 78 | 441 | 1.16e-22 | 100 |
MS.gene60932.t1 | AT3G20015 | 26.000 | 450 | 291 | 15 | 35 | 471 | 50 | 470 | 2.95e-22 | 99.8 |
MS.gene60932.t1 | AT1G31450 | 28.392 | 398 | 247 | 13 | 95 | 472 | 63 | 442 | 1.00e-21 | 97.8 |
MS.gene60932.t1 | AT3G54400 | 27.154 | 383 | 224 | 16 | 110 | 471 | 76 | 424 | 1.91e-20 | 94.0 |
MS.gene60932.t1 | AT3G02740 | 25.840 | 387 | 229 | 16 | 117 | 472 | 81 | 440 | 1.60e-18 | 88.6 |
MS.gene60932.t1 | AT1G08210 | 26.966 | 356 | 212 | 12 | 118 | 446 | 81 | 415 | 1.91e-18 | 88.6 |
MS.gene60932.t1 | AT5G43100 | 24.474 | 380 | 226 | 14 | 119 | 472 | 74 | 418 | 1.07e-17 | 86.3 |
MS.gene60932.t1 | AT5G43100 | 24.474 | 380 | 226 | 14 | 119 | 472 | 74 | 418 | 2.13e-17 | 85.1 |
MS.gene60932.t1 | AT3G02740 | 25.587 | 383 | 227 | 16 | 121 | 472 | 10 | 365 | 3.09e-17 | 84.0 |
MS.gene60932.t1 | AT2G28220 | 25.745 | 369 | 220 | 16 | 121 | 472 | 67 | 398 | 3.33e-17 | 84.0 |
MS.gene60932.t1 | AT5G07030 | 25.330 | 379 | 241 | 14 | 110 | 472 | 103 | 455 | 6.08e-17 | 83.6 |
MS.gene60932.t1 | AT4G30030 | 25.613 | 367 | 236 | 14 | 119 | 471 | 76 | 419 | 6.13e-17 | 83.2 |
MS.gene60932.t1 | AT2G36670 | 24.755 | 408 | 257 | 14 | 93 | 472 | 73 | 458 | 1.31e-16 | 82.8 |
MS.gene60932.t1 | AT3G25700 | 36.154 | 130 | 78 | 3 | 345 | 471 | 220 | 347 | 1.39e-16 | 81.3 |
MS.gene60932.t1 | AT2G36670 | 25.000 | 380 | 236 | 13 | 121 | 472 | 105 | 463 | 1.13e-15 | 79.7 |
MS.gene60932.t1 | AT2G36670 | 25.263 | 380 | 235 | 14 | 121 | 472 | 34 | 392 | 1.14e-15 | 79.3 |
MS.gene60932.t1 | AT2G36670 | 25.263 | 380 | 235 | 14 | 121 | 472 | 34 | 392 | 1.14e-15 | 79.3 |
MS.gene60932.t1 | AT4G30040 | 26.316 | 399 | 237 | 19 | 96 | 466 | 58 | 427 | 1.75e-15 | 79.0 |
MS.gene60932.t1 | AT1G66180 | 25.823 | 395 | 238 | 17 | 103 | 472 | 63 | 427 | 2.57e-15 | 78.2 |
MS.gene60932.t1 | AT2G23945 | 28.267 | 329 | 179 | 15 | 108 | 411 | 83 | 379 | 3.07e-14 | 75.1 |
MS.gene60932.t1 | AT5G36260 | 21.973 | 446 | 273 | 16 | 55 | 472 | 36 | 434 | 8.55e-14 | 73.9 |
MS.gene60932.t1 | AT2G28030 | 25.344 | 363 | 225 | 13 | 121 | 472 | 61 | 388 | 2.00e-13 | 72.4 |
MS.gene60932.t1 | AT2G39710 | 25.333 | 375 | 235 | 17 | 123 | 467 | 67 | 426 | 2.66e-13 | 72.0 |
MS.gene60932.t1 | AT1G05840 | 24.638 | 414 | 253 | 19 | 92 | 472 | 52 | 439 | 3.39e-13 | 72.0 |
MS.gene60932.t1 | AT2G28040 | 24.863 | 366 | 224 | 16 | 120 | 472 | 55 | 382 | 7.41e-13 | 70.5 |
MS.gene60932.t1 | AT2G28040 | 24.863 | 366 | 224 | 16 | 120 | 472 | 64 | 391 | 9.52e-13 | 70.1 |
MS.gene60932.t1 | AT2G28010 | 24.523 | 367 | 223 | 16 | 121 | 472 | 65 | 392 | 1.50e-12 | 69.7 |
MS.gene60932.t1 | AT1G79720 | 24.224 | 483 | 303 | 18 | 26 | 471 | 26 | 482 | 4.61e-12 | 68.6 |
Find 81 sgRNAs with CRISPR-Local
Find 211 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
ACTTCCAAACCACCATTATT+TGG | 0.151656 | 2.4:+30851160 | None:intergenic |
GAATGATTTGAATCAATAAA+AGG | 0.191126 | 2.4:+30854368 | None:intergenic |
GGAACACGTAATTCTATTAT+TGG | 0.204040 | 2.4:-30850989 | MS.gene60932:CDS |
ACCATTATTTGGATCATTAA+TGG | 0.207608 | 2.4:+30851171 | None:intergenic |
GAATTACGTGTTCCATTTAC+TGG | 0.216571 | 2.4:+30850998 | None:intergenic |
GACAATGCTGGTCTAAAATT+TGG | 0.217971 | 2.4:-30851514 | MS.gene60932:CDS |
CCTAGGTTAGTGTTTCATTT+TGG | 0.230464 | 2.4:-30851100 | MS.gene60932:CDS |
GATCAAGTTGAAGCTATAAA+AGG | 0.233864 | 2.4:-30854238 | MS.gene60932:CDS |
TCACTCAACAATTTGACTTT+AGG | 0.269056 | 2.4:+30851415 | None:intergenic |
TTATGCAACAAAATCATCTT+TGG | 0.270285 | 2.4:-30850961 | MS.gene60932:CDS |
TCATCAGCTGTGGGATTCTA+TGG | 0.292908 | 2.4:-30851694 | MS.gene60932:CDS |
GAACACCAGGTCAAAAGTTT+TGG | 0.302891 | 2.4:-30854036 | MS.gene60932:CDS |
TCAGGAAGAGATGTTGAAAT+TGG | 0.314062 | 2.4:-30854085 | MS.gene60932:CDS |
TCAAAAGGGATATATTTAGA+AGG | 0.328714 | 2.4:-30854210 | MS.gene60932:CDS |
GTAACATTCACACCATAAAA+TGG | 0.329917 | 2.4:+30851361 | None:intergenic |
GTTTCAAGCTACCTAACATT+TGG | 0.330880 | 2.4:-30851445 | MS.gene60932:CDS |
ACCATTAATGATCCAAATAA+TGG | 0.339168 | 2.4:-30851172 | MS.gene60932:CDS |
GAAAATCCCACCAAAGGTTT+GGG | 0.350338 | 2.4:-30851311 | MS.gene60932:CDS |
TGCCTCTACAACAGGATAAT+AGG | 0.358648 | 2.4:+30851222 | None:intergenic |
TCATGAAGAGCATGAGAATA+TGG | 0.359184 | 2.4:-30854317 | MS.gene60932:CDS |
AGGCATGATTCAAGATTTCT+TGG | 0.371809 | 2.4:-30854268 | MS.gene60932:CDS |
TGAAAATCCCACCAAAGGTT+TGG | 0.372838 | 2.4:-30851312 | MS.gene60932:CDS |
TGACAATCAGTCAAACTATA+AGG | 0.373919 | 2.4:+30853764 | None:intergenic |
ATCCATGCCTTTATGAAGTC+AGG | 0.375990 | 2.4:-30853730 | MS.gene60932:intron |
AAGCTTCAAAATCAAACAAT+TGG | 0.385729 | 2.4:-30851628 | MS.gene60932:CDS |
TGATCCAAATAATGGTGGTT+TGG | 0.393986 | 2.4:-30851164 | MS.gene60932:CDS |
TATGCAACAAAATCATCTTT+GGG | 0.404556 | 2.4:-30850960 | MS.gene60932:CDS |
CAAATGATCAACAAGACAAT+AGG | 0.405740 | 2.4:+30851480 | None:intergenic |
TTCAAGAACAAGTGCAGTTA+AGG | 0.408146 | 2.4:+30851246 | None:intergenic |
TAGGAGTTGTTCCAAATGTT+AGG | 0.418863 | 2.4:+30851434 | None:intergenic |
CTATAAAAGGGTTCATCAAA+AGG | 0.433627 | 2.4:-30854225 | MS.gene60932:CDS |
GGCATGATTCAAGATTTCTT+GGG | 0.435229 | 2.4:-30854267 | MS.gene60932:CDS |
GCTTCAAAATCCCAAACCTT+TGG | 0.441065 | 2.4:+30851301 | None:intergenic |
AAACAAACCTGACTTCATAA+AGG | 0.442694 | 2.4:+30853723 | None:intergenic |
CATTCATTTGTTGACAATGC+TGG | 0.443741 | 2.4:-30851526 | MS.gene60932:CDS |
GTTGGTGGAATATTAGCCTT+AGG | 0.448786 | 2.4:-30851559 | MS.gene60932:CDS |
GAAATCTTGAATCATGCCTA+TGG | 0.478263 | 2.4:+30854272 | None:intergenic |
TCAAAATCCCAAACCTTTGG+TGG | 0.478987 | 2.4:+30851304 | None:intergenic |
GAAATGATGGATCAAAGAAT+AGG | 0.483791 | 2.4:-30854187 | MS.gene60932:CDS |
AATGATTTGAATCAATAAAA+GGG | 0.488996 | 2.4:+30854369 | None:intergenic |
CTCATACAGCAAGAAGAAGA+AGG | 0.494652 | 2.4:-30853886 | MS.gene60932:intron |
TATATTTAGAAGGGAAATGA+TGG | 0.495318 | 2.4:-30854200 | MS.gene60932:CDS |
ATCAAGTTGAAGCTATAAAA+GGG | 0.495500 | 2.4:-30854237 | MS.gene60932:CDS |
TATAAAAGGGTTCATCAAAA+GGG | 0.507128 | 2.4:-30854224 | MS.gene60932:CDS |
ATGAATTATCAAGGTGGTCA+TGG | 0.510467 | 2.4:-30854163 | MS.gene60932:CDS |
TTGATCGTCGACGGAGATGC+CGG | 0.510880 | 2.4:+30851339 | None:intergenic |
ATCTTTGACAGCTATGGTAG+TGG | 0.513051 | 2.4:-30851721 | MS.gene60932:intron |
CAAAATCCCAAACCTTTGGT+GGG | 0.519085 | 2.4:+30851305 | None:intergenic |
TGAAGAGGAAATTGATGCAA+TGG | 0.528126 | 2.4:-30854411 | MS.gene60932:CDS |
AGAATAGGAATGAATTATCA+AGG | 0.529627 | 2.4:-30854172 | MS.gene60932:CDS |
TTCCCATATGAAAATGTTGG+TGG | 0.533682 | 2.4:-30851574 | MS.gene60932:CDS |
CAGCATTGTCAACAAATGAA+TGG | 0.541187 | 2.4:+30851527 | None:intergenic |
ACTCTCTAGTTGCATGGAGA+AGG | 0.546138 | 2.4:+30850902 | None:intergenic |
CAAAAGGGATATATTTAGAA+GGG | 0.548098 | 2.4:-30854209 | MS.gene60932:CDS |
TGAATGGTGTCTAAAGCCTA+AGG | 0.550436 | 2.4:+30851543 | None:intergenic |
TCATAAAGGCATGGATCAGA+AGG | 0.555785 | 2.4:+30853737 | None:intergenic |
TCAATGATGTAACTCTTCAC+TGG | 0.557173 | 2.4:+30851055 | None:intergenic |
GAAGTTTGCTTTGATGCAGA+AGG | 0.557366 | 2.4:-30851142 | MS.gene60932:CDS |
ATAACAACTCTCTAGTTGCA+TGG | 0.561768 | 2.4:+30850896 | None:intergenic |
GGTTTCCCATATGAAAATGT+TGG | 0.562696 | 2.4:-30851577 | MS.gene60932:CDS |
GCATGATTCAAGATTTCTTG+GGG | 0.578453 | 2.4:-30854266 | MS.gene60932:CDS |
TATCTAATATGCAAATGAAG+AGG | 0.579339 | 2.4:-30854426 | None:intergenic |
TCATACAGCAAGAAGAAGAA+GGG | 0.591156 | 2.4:-30853885 | MS.gene60932:intron |
AGCCTATTATCCTGTTGTAG+AGG | 0.592083 | 2.4:-30851224 | MS.gene60932:CDS |
TTTCAGCATTTGATCGTCGA+CGG | 0.594223 | 2.4:+30851330 | None:intergenic |
GGTGTTACAGTTGGAACACC+AGG | 0.594771 | 2.4:-30854049 | MS.gene60932:CDS |
GAAGGGATGATCATTGACTC+AGG | 0.595985 | 2.4:-30851274 | MS.gene60932:CDS |
AACCTGACTTCATAAAGGCA+TGG | 0.599467 | 2.4:+30853728 | None:intergenic |
CCAAAATGAAACACTAACCT+AGG | 0.600070 | 2.4:+30851100 | None:intergenic |
ATTAATGATCCAAATAATGG+TGG | 0.600681 | 2.4:-30851169 | MS.gene60932:CDS |
TAGTGGAATATCATCAGCTG+TGG | 0.608753 | 2.4:-30851704 | MS.gene60932:CDS |
AATGCTGAAAATCCCACCAA+AGG | 0.615934 | 2.4:-30851317 | MS.gene60932:CDS |
CAATCAGTGATAAATAGTCC+AGG | 0.618605 | 2.4:-30851598 | MS.gene60932:CDS |
TGAGTCTAGAACTTATCCAT+AGG | 0.624401 | 2.4:-30854288 | MS.gene60932:CDS |
TTGATGAGAGTATTGCACCT+AGG | 0.634165 | 2.4:-30851117 | MS.gene60932:CDS |
AGTGGAATATCATCAGCTGT+GGG | 0.653217 | 2.4:-30851703 | MS.gene60932:CDS |
ATGATGTAACTCTTCACTGG+TGG | 0.683679 | 2.4:+30851058 | None:intergenic |
GGACAAAACATATCATCACA+AGG | 0.713390 | 2.4:+30853848 | None:intergenic |
TGTTCATAGCATCAACAGCG+AGG | 0.716992 | 2.4:-30854344 | MS.gene60932:CDS |
TGAAATGTATGAGAACGATG+TGG | 0.744665 | 2.4:+30853827 | None:intergenic |
ATAGGAATGAATTATCAAGG+TGG | 0.746997 | 2.4:-30854169 | MS.gene60932:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TAATTTTTTTATTTATTTTT+TGG | + | chr2.4:30852764-30852783 | None:intergenic | 0.0% |
!! | AAAAAGTAATAAATAGTTAA+AGG | - | chr2.4:30852378-30852397 | MS.gene60932:intron | 10.0% |
!!! | AAATTTCTCATATTTATTTT+AGG | - | chr2.4:30853524-30853543 | MS.gene60932:intron | 10.0% |
!!! | GTCAAATATTTTTTATAAAT+AGG | + | chr2.4:30852503-30852522 | None:intergenic | 10.0% |
!!! | TTTTTTTTTGAAACAATTAA+AGG | - | chr2.4:30852286-30852305 | MS.gene60932:intron | 10.0% |
!! | AAAATAAAACATGAAAAAAG+AGG | + | chr2.4:30851637-30851656 | None:intergenic | 15.0% |
!! | AAATAAAACATGAAAAAAGA+GGG | + | chr2.4:30851636-30851655 | None:intergenic | 15.0% |
!! | AATGATTTGAATCAATAAAA+GGG | + | chr2.4:30850959-30850978 | None:intergenic | 15.0% |
!! | AGAGATATATTAATATGTAT+TGG | + | chr2.4:30852142-30852161 | None:intergenic | 15.0% |
!! | ATCTCAATTCAATATATTTA+AGG | - | chr2.4:30852108-30852127 | MS.gene60932:intron | 15.0% |
!! | CATAAACATAATAAACATAA+AGG | - | chr2.4:30851387-30851406 | MS.gene60932:CDS | 15.0% |
!! | GATATTTATAAAAACACTAT+TGG | - | chr2.4:30854393-30854412 | MS.gene60932:CDS | 15.0% |
!! | TATTATGTTTATGTTTATGT+TGG | + | chr2.4:30851380-30851399 | None:intergenic | 15.0% |
!! | TCTCAATTCAATATATTTAA+GGG | - | chr2.4:30852109-30852128 | MS.gene60932:intron | 15.0% |
!! | TTAAATATATTGAATTGAGA+TGG | + | chr2.4:30852109-30852128 | None:intergenic | 15.0% |
!! | TTATAAATGAGAATTAATGT+TGG | - | chr2.4:30853251-30853270 | MS.gene60932:intron | 15.0% |
!!! | AAAGAAATTAGAAGATTTTT+AGG | + | chr2.4:30851920-30851939 | None:intergenic | 15.0% |
!!! | ATATTTTTTATAAATAGGAC+CGG | + | chr2.4:30852498-30852517 | None:intergenic | 15.0% |
!!! | ATCAAAATGGTAATTTATTT+TGG | + | chr2.4:30852020-30852039 | None:intergenic | 15.0% |
!!! | CAAAAAATTAGAAGATTTTT+AGG | - | chr2.4:30851766-30851785 | MS.gene60932:intron | 15.0% |
!!! | CTTTTCAATTTAAATTTGAA+AGG | + | chr2.4:30853412-30853431 | None:intergenic | 15.0% |
!!! | TTAATTTTGTTTTGTTTTGA+TGG | - | chr2.4:30851693-30851712 | MS.gene60932:CDS | 15.0% |
!! | AAACATAATAAACATAAAGG+AGG | - | chr2.4:30851390-30851409 | MS.gene60932:CDS | 20.0% |
!! | AACATAATAAACATAAAGGA+GGG | - | chr2.4:30851391-30851410 | MS.gene60932:CDS | 20.0% |
!! | AACATTAACAAGCATTATTA+AGG | - | chr2.4:30851810-30851829 | MS.gene60932:intron | 20.0% |
!! | AATATAAGTCAATATATGTG+AGG | + | chr2.4:30853087-30853106 | None:intergenic | 20.0% |
!! | AATCAATGTGTTTGATTATA+TGG | - | chr2.4:30852984-30853003 | MS.gene60932:intron | 20.0% |
!! | ACATTAACAAGCATTATTAA+GGG | - | chr2.4:30851811-30851830 | MS.gene60932:intron | 20.0% |
!! | ATTTAAATTTGAAAGGAGTA+AGG | + | chr2.4:30853405-30853424 | None:intergenic | 20.0% |
!! | CAAAAGTTTGATAAATGAAT+TGG | - | chr2.4:30853449-30853468 | MS.gene60932:intron | 20.0% |
!! | CAAAATTCGTTATATTTACA+AGG | + | chr2.4:30853027-30853046 | None:intergenic | 20.0% |
!! | GAATGATTTGAATCAATAAA+AGG | + | chr2.4:30850960-30850979 | None:intergenic | 20.0% |
!! | TAATTCTCATTTATAACCAA+TGG | + | chr2.4:30853247-30853266 | None:intergenic | 20.0% |
!! | TATATTTAACTATGCTTCTA+TGG | - | chr2.4:30852161-30852180 | MS.gene60932:intron | 20.0% |
!! | TATTGTCTTGAAAATCAAAA+TGG | + | chr2.4:30852033-30852052 | None:intergenic | 20.0% |
!!! | AAACACATTGATTATTTGAT+GGG | + | chr2.4:30852977-30852996 | None:intergenic | 20.0% |
!!! | AGTTATTACCATTTTCAAAT+TGG | - | chr2.4:30851842-30851861 | MS.gene60932:intron | 20.0% |
!!! | TTTTACTTTTTGCTTTTTCA+TGG | - | chr2.4:30852194-30852213 | MS.gene60932:intron | 20.0% |
! | AAATGAGAATTAATGTTGGT+AGG | - | chr2.4:30853255-30853274 | MS.gene60932:intron | 25.0% |
! | AACCTAAGCAATAAAAAGAT+AGG | - | chr2.4:30853673-30853692 | MS.gene60932:intron | 25.0% |
! | AAGCTTCAAAATCAAACAAT+TGG | - | chr2.4:30853697-30853716 | MS.gene60932:intron | 25.0% |
! | ACCATTAATGATCCAAATAA+TGG | - | chr2.4:30854153-30854172 | MS.gene60932:CDS | 25.0% |
! | ACCATTATTTGGATCATTAA+TGG | + | chr2.4:30854157-30854176 | None:intergenic | 25.0% |
! | AGAATAGGAATGAATTATCA+AGG | - | chr2.4:30851153-30851172 | MS.gene60932:CDS | 25.0% |
! | AGATTTCAATTTCAATTGGT+TGG | - | chr2.4:30852824-30852843 | MS.gene60932:intron | 25.0% |
! | ATATCTAGATATAGTTGTCA+AGG | + | chr2.4:30853382-30853401 | None:intergenic | 25.0% |
! | ATGGTTTAAATGTATGAGAA+AGG | - | chr2.4:30851341-30851360 | MS.gene60932:CDS | 25.0% |
! | ATTAATGATCCAAATAATGG+TGG | - | chr2.4:30854156-30854175 | MS.gene60932:CDS | 25.0% |
! | ATTGTAACACATAGTCAAAA+CGG | + | chr2.4:30852725-30852744 | None:intergenic | 25.0% |
! | CAAAAGGGATATATTTAGAA+GGG | - | chr2.4:30851116-30851135 | MS.gene60932:CDS | 25.0% |
! | CATTGCATAAATGATGAATT+TGG | - | chr2.4:30852533-30852552 | MS.gene60932:intron | 25.0% |
! | CATTTGTTCCAATTTGAAAA+TGG | + | chr2.4:30851853-30851872 | None:intergenic | 25.0% |
! | CCAAAGATTTCAATTTCAAT+TGG | - | chr2.4:30852820-30852839 | MS.gene60932:intron | 25.0% |
! | CCAATTGAAATTGAAATCTT+TGG | + | chr2.4:30852823-30852842 | None:intergenic | 25.0% |
! | GAGAAAAGATGAGAAATTAA+AGG | - | chr2.4:30852254-30852273 | MS.gene60932:intron | 25.0% |
! | TATAAAAGGGTTCATCAAAA+GGG | - | chr2.4:30851101-30851120 | MS.gene60932:CDS | 25.0% |
! | TATATTTAGAAGGGAAATGA+TGG | - | chr2.4:30851125-30851144 | MS.gene60932:CDS | 25.0% |
! | TATGCAACAAAATCATCTTT+GGG | - | chr2.4:30854365-30854384 | MS.gene60932:CDS | 25.0% |
! | TCAAAAGGGATATATTTAGA+AGG | - | chr2.4:30851115-30851134 | MS.gene60932:CDS | 25.0% |
! | TTATGCAACAAAATCATCTT+TGG | - | chr2.4:30854364-30854383 | MS.gene60932:CDS | 25.0% |
! | TTTGTTGCAAGTAGATTAAT+AGG | - | chr2.4:30851729-30851748 | MS.gene60932:intron | 25.0% |
!! | ATCTCTAAAAAAGTAAACGT+TGG | - | chr2.4:30853053-30853072 | MS.gene60932:intron | 25.0% |
!! | CAAACACATTGATTATTTGA+TGG | + | chr2.4:30852978-30852997 | None:intergenic | 25.0% |
!! | GAAATTGGTGAATATTTTGT+TGG | - | chr2.4:30851255-30851274 | MS.gene60932:CDS | 25.0% |
!! | GTAGATTAATAGGATTGTTT+TGG | - | chr2.4:30851739-30851758 | MS.gene60932:intron | 25.0% |
!! | TCTCTAAAAAAGTAAACGTT+GGG | - | chr2.4:30853054-30853073 | MS.gene60932:intron | 25.0% |
!! | TCTTAAGTGCACATTAATTT+TGG | + | chr2.4:30852874-30852893 | None:intergenic | 25.0% |
!! | TTCCTATCTTTTTATTGCTT+AGG | + | chr2.4:30853678-30853697 | None:intergenic | 25.0% |
!! | TTTGAATTTTCAATGCATTC+AGG | - | chr2.4:30851222-30851241 | MS.gene60932:CDS | 25.0% |
!!! | AATTGGTTGGTTTGTTTATA+AGG | - | chr2.4:30852837-30852856 | MS.gene60932:intron | 25.0% |
!!! | ATCAAGTTGAAGCTATAAAA+GGG | - | chr2.4:30851088-30851107 | MS.gene60932:CDS | 25.0% |
!!! | TTGCTAGAAAATTGTTTTGT+GGG | - | chr2.4:30851657-30851676 | MS.gene60932:CDS | 25.0% |
!!! | TTTGCTAGAAAATTGTTTTG+TGG | - | chr2.4:30851656-30851675 | MS.gene60932:CDS | 25.0% |
AAACAAACCTGACTTCATAA+AGG | + | chr2.4:30851605-30851624 | None:intergenic | 30.0% | |
AATCAGAACTCTAAATACGT+TGG | + | chr2.4:30852920-30852939 | None:intergenic | 30.0% | |
AATCTTATCTTTGACAGCTA+TGG | - | chr2.4:30853598-30853617 | MS.gene60932:intron | 30.0% | |
ATAGGAATGAATTATCAAGG+TGG | - | chr2.4:30851156-30851175 | MS.gene60932:CDS | 30.0% | |
ATTGAACATTAATCAAGCAC+TGG | + | chr2.4:30853559-30853578 | None:intergenic | 30.0% | |
CAAATGATCAACAAGACAAT+AGG | + | chr2.4:30853848-30853867 | None:intergenic | 30.0% | |
CTATAAAAGGGTTCATCAAA+AGG | - | chr2.4:30851100-30851119 | MS.gene60932:CDS | 30.0% | |
CTTAAGAGAAGGTAAATTTG+AGG | + | chr2.4:30852325-30852344 | None:intergenic | 30.0% | |
GGAACACGTAATTCTATTAT+TGG | - | chr2.4:30854336-30854355 | MS.gene60932:CDS | 30.0% | |
GTAACATTCACACCATAAAA+TGG | + | chr2.4:30853967-30853986 | None:intergenic | 30.0% | |
GTCTCACATTATACTCATTT+CGG | + | chr2.4:30852629-30852648 | None:intergenic | 30.0% | |
TCTCATTTATAACCAATGGT+TGG | + | chr2.4:30853243-30853262 | None:intergenic | 30.0% | |
TGACAATCAGTCAAACTATA+AGG | + | chr2.4:30851564-30851583 | None:intergenic | 30.0% | |
! | AACGTATTTAGAGTTCTGAT+TGG | - | chr2.4:30852919-30852938 | MS.gene60932:intron | 30.0% |
! | ACAATTAAAGGCTACCTTTT+TGG | - | chr2.4:30852298-30852317 | MS.gene60932:intron | 30.0% |
! | ATTCCACCAACATTTTCATA+TGG | + | chr2.4:30853757-30853776 | None:intergenic | 30.0% |
! | CTTCTCTATCAACCATTTTA+TGG | - | chr2.4:30853952-30853971 | MS.gene60932:intron | 30.0% |
! | TCACTCAACAATTTGACTTT+AGG | + | chr2.4:30853913-30853932 | None:intergenic | 30.0% |
! | TTCCACCAACATTTTCATAT+GGG | + | chr2.4:30853756-30853775 | None:intergenic | 30.0% |
! | TTTTAGGCAGAAACTTTTCA+GGG | + | chr2.4:30851801-30851782 | None:intergenic | 30.0% |
! | TTTTATGGTGTGAATGTTAC+CGG | - | chr2.4:30853967-30853986 | MS.gene60932:intron | 30.0% |
! | TTTTTATAAATAGGACCGGA+GGG | + | chr2.4:30852494-30852513 | None:intergenic | 30.0% |
!! | AATCCAAGACACTTAGTTTT+TGG | + | chr2.4:30854303-30854322 | None:intergenic | 30.0% |
!! | GAAATGATGGATCAAAGAAT+AGG | - | chr2.4:30851138-30851157 | MS.gene60932:CDS | 30.0% |
!! | GATCAAGTTGAAGCTATAAA+AGG | - | chr2.4:30851087-30851106 | MS.gene60932:CDS | 30.0% |
!! | TGCTAGAAAATTGTTTTGTG+GGG | - | chr2.4:30851658-30851677 | MS.gene60932:CDS | 30.0% |
!! | TTTTTAGGCAGAAACTTTTC+AGG | + | chr2.4:30851800-30851781 | None:intergenic | 30.0% |
!!! | GTAGAGGAGTACTTTTTTAA+AGG | + | chr2.4:30853173-30853192 | None:intergenic | 30.0% |
!!! | TATTTTGTTGGTGTTACAGT+TGG | - | chr2.4:30851267-30851286 | MS.gene60932:CDS | 30.0% |
!!! | TTTTTTATAAATAGGACCGG+AGG | + | chr2.4:30852495-30852514 | None:intergenic | 30.0% |
ACAGAGGAAGTTATTAGTAG+TGG | - | chr2.4:30852647-30852666 | MS.gene60932:intron | 35.0% | |
ACTTCCAAACCACCATTATT+TGG | + | chr2.4:30854168-30854187 | None:intergenic | 35.0% | |
AGGCATGATTCAAGATTTCT+TGG | - | chr2.4:30851057-30851076 | MS.gene60932:CDS | 35.0% | |
ATACAGGAAGTGAGTTAACA+TGG | - | chr2.4:30851322-30851341 | MS.gene60932:CDS | 35.0% | |
ATATAGTTGTCAAGGTGAAC+AGG | + | chr2.4:30853374-30853393 | None:intergenic | 35.0% | |
ATGAATTATCAAGGTGGTCA+TGG | - | chr2.4:30851162-30851181 | MS.gene60932:CDS | 35.0% | |
ATGAGTATAATGTGAGACAG+AGG | - | chr2.4:30852631-30852650 | MS.gene60932:intron | 35.0% | |
ATGCCTTGAATGAAGAAATG+TGG | + | chr2.4:30853295-30853314 | None:intergenic | 35.0% | |
CAATCAGTGATAAATAGTCC+AGG | - | chr2.4:30853727-30853746 | MS.gene60932:intron | 35.0% | |
CAGCATTGTCAACAAATGAA+TGG | + | chr2.4:30853801-30853820 | None:intergenic | 35.0% | |
CCAAAATGAAACACTAACCT+AGG | + | chr2.4:30854228-30854247 | None:intergenic | 35.0% | |
GAAATCTTGAATCATGCCTA+TGG | + | chr2.4:30851056-30851075 | None:intergenic | 35.0% | |
GAATTACGTGTTCCATTTAC+TGG | + | chr2.4:30854330-30854349 | None:intergenic | 35.0% | |
GCATGATTCAAGATTTCTTG+GGG | - | chr2.4:30851059-30851078 | MS.gene60932:CDS | 35.0% | |
GGACAAAACATATCATCACA+AGG | + | chr2.4:30851480-30851499 | None:intergenic | 35.0% | |
GGCATGATTCAAGATTTCTT+GGG | - | chr2.4:30851058-30851077 | MS.gene60932:CDS | 35.0% | |
GGTTTCCCATATGAAAATGT+TGG | - | chr2.4:30853748-30853767 | MS.gene60932:CDS | 35.0% | |
GTTTCAAGCTACCTAACATT+TGG | - | chr2.4:30853880-30853899 | MS.gene60932:CDS | 35.0% | |
TACCTTCTCTTAAGACAGTT+GGG | - | chr2.4:30852331-30852350 | MS.gene60932:intron | 35.0% | |
TAGGAGTTGTTCCAAATGTT+AGG | + | chr2.4:30853894-30853913 | None:intergenic | 35.0% | |
TATAGTTGTCAAGGTGAACA+GGG | + | chr2.4:30853373-30853392 | None:intergenic | 35.0% | |
TCAATGATGTAACTCTTCAC+TGG | + | chr2.4:30854273-30854292 | None:intergenic | 35.0% | |
TCAGGAAGAGATGTTGAAAT+TGG | - | chr2.4:30851240-30851259 | MS.gene60932:CDS | 35.0% | |
TCATACAGCAAGAAGAAGAA+GGG | - | chr2.4:30851440-30851459 | MS.gene60932:CDS | 35.0% | |
TGAAATGTATGAGAACGATG+TGG | + | chr2.4:30851501-30851520 | None:intergenic | 35.0% | |
TGAAGAGGAAATTGATGCAA+TGG | - | chr2.4:30850914-30850933 | MS.gene60932:CDS | 35.0% | |
TGATCCAAATAATGGTGGTT+TGG | - | chr2.4:30854161-30854180 | MS.gene60932:CDS | 35.0% | |
TGCCTTGAATGAAGAAATGT+GGG | + | chr2.4:30853294-30853313 | None:intergenic | 35.0% | |
TTACCTTCTCTTAAGACAGT+TGG | - | chr2.4:30852330-30852349 | MS.gene60932:intron | 35.0% | |
TTCAAGAACAAGTGCAGTTA+AGG | + | chr2.4:30854082-30854101 | None:intergenic | 35.0% | |
TTCCCATATGAAAATGTTGG+TGG | - | chr2.4:30853751-30853770 | MS.gene60932:CDS | 35.0% | |
! | ACATTTTCATATGGGAAACC+TGG | + | chr2.4:30853748-30853767 | None:intergenic | 35.0% |
! | AGGTTAGTGTTTCATTTTGG+TGG | - | chr2.4:30854228-30854247 | MS.gene60932:CDS | 35.0% |
! | ATAAGCCAAAACTTTTGACC+TGG | + | chr2.4:30851297-30851316 | None:intergenic | 35.0% |
! | CATTCATTTGTTGACAATGC+TGG | - | chr2.4:30853799-30853818 | MS.gene60932:CDS | 35.0% |
! | CCTAGGTTAGTGTTTCATTT+TGG | - | chr2.4:30854225-30854244 | MS.gene60932:CDS | 35.0% |
! | CTTGGATTTTTGCCAGTAAA+TGG | - | chr2.4:30854315-30854334 | MS.gene60932:CDS | 35.0% |
! | GACAATGCTGGTCTAAAATT+TGG | - | chr2.4:30853811-30853830 | MS.gene60932:CDS | 35.0% |
! | GGTAAATTTGAGGTCCAAAA+AGG | + | chr2.4:30852315-30852334 | None:intergenic | 35.0% |
! | GGTAGCTTGAAACATTTTTG+TGG | + | chr2.4:30853873-30853892 | None:intergenic | 35.0% |
! | TAGAGTTCTGATTGGAGTAA+TGG | - | chr2.4:30852927-30852946 | MS.gene60932:intron | 35.0% |
! | TCATGAAGAGCATGAGAATA+TGG | - | chr2.4:30851008-30851027 | MS.gene60932:CDS | 35.0% |
! | TGAGTCTAGAACTTATCCAT+AGG | - | chr2.4:30851037-30851056 | MS.gene60932:CDS | 35.0% |
! | TGTTTTACAAATGTGTCACG+TGG | + | chr2.4:30851991-30852010 | None:intergenic | 35.0% |
! | TTGTGGTAATGTATGTGTAG+AGG | + | chr2.4:30853189-30853208 | None:intergenic | 35.0% |
!! | AAAATTGTTTTGTGGGGTGT+TGG | - | chr2.4:30851664-30851683 | MS.gene60932:CDS | 35.0% |
!! | TTAGTGTTTCATTTTGGTGG+AGG | - | chr2.4:30854231-30854250 | MS.gene60932:CDS | 35.0% |
!! | TTCATTTTGGTGGAGGAATA+AGG | - | chr2.4:30854238-30854257 | MS.gene60932:CDS | 35.0% |
!! | TTTTTCAATGCCTCTACAAC+AGG | + | chr2.4:30854114-30854133 | None:intergenic | 35.0% |
!!! | TTTTGGCTTATTGCTGATAC+AGG | - | chr2.4:30851306-30851325 | MS.gene60932:CDS | 35.0% |
AACCTGACTTCATAAAGGCA+TGG | + | chr2.4:30851600-30851619 | None:intergenic | 40.0% | |
AATGCTGAAAATCCCACCAA+AGG | - | chr2.4:30854008-30854027 | MS.gene60932:intron | 40.0% | |
ACCTTCTCTTAAGACAGTTG+GGG | - | chr2.4:30852332-30852351 | MS.gene60932:intron | 40.0% | |
AGCCTATTATCCTGTTGTAG+AGG | - | chr2.4:30854101-30854120 | MS.gene60932:CDS | 40.0% | |
AGTGGAATATCATCAGCTGT+GGG | - | chr2.4:30853622-30853641 | MS.gene60932:intron | 40.0% | |
ATCCATGCCTTTATGAAGTC+AGG | - | chr2.4:30851595-30851614 | MS.gene60932:CDS | 40.0% | |
ATCTTTGACAGCTATGGTAG+TGG | - | chr2.4:30853604-30853623 | MS.gene60932:intron | 40.0% | |
ATGATGTAACTCTTCACTGG+TGG | + | chr2.4:30854270-30854289 | None:intergenic | 40.0% | |
CAAAATCCCAAACCTTTGGT+GGG | + | chr2.4:30854023-30854042 | None:intergenic | 40.0% | |
CAAATGTCTCATGAGCATCA+AGG | + | chr2.4:30853141-30853160 | None:intergenic | 40.0% | |
CAAGCATTATTAAGGGTCAG+AGG | - | chr2.4:30851818-30851837 | MS.gene60932:intron | 40.0% | |
CTCATACAGCAAGAAGAAGA+AGG | - | chr2.4:30851439-30851458 | MS.gene60932:CDS | 40.0% | |
CTCATGAGACATTTGGTAAG+AGG | - | chr2.4:30853146-30853165 | MS.gene60932:intron | 40.0% | |
CTTGATGCTCATGAGACATT+TGG | - | chr2.4:30853139-30853158 | MS.gene60932:intron | 40.0% | |
GAAAATCCCACCAAAGGTTT+GGG | - | chr2.4:30854014-30854033 | MS.gene60932:intron | 40.0% | |
GAGCAGAACATTGTCTAGTA+CGG | - | chr2.4:30852894-30852913 | MS.gene60932:intron | 40.0% | |
GCACCAAAAACTAAGTGTCT+TGG | - | chr2.4:30854297-30854316 | MS.gene60932:CDS | 40.0% | |
GCTTCAAAATCCCAAACCTT+TGG | + | chr2.4:30854027-30854046 | None:intergenic | 40.0% | |
GTCCCACATTTCTTCATTCA+AGG | - | chr2.4:30853289-30853308 | MS.gene60932:intron | 40.0% | |
TAAAAGGTTGGGCTAATTGC+TGG | + | chr2.4:30853350-30853369 | None:intergenic | 40.0% | |
TAGTGGAATATCATCAGCTG+TGG | - | chr2.4:30853621-30853640 | MS.gene60932:intron | 40.0% | |
TATAACCAATGGTTGGATGC+TGG | + | chr2.4:30853236-30853255 | None:intergenic | 40.0% | |
TCAAAATCCCAAACCTTTGG+TGG | + | chr2.4:30854024-30854043 | None:intergenic | 40.0% | |
TGAAAATCCCACCAAAGGTT+TGG | - | chr2.4:30854013-30854032 | MS.gene60932:intron | 40.0% | |
TGCCTCTACAACAGGATAAT+AGG | + | chr2.4:30854106-30854125 | None:intergenic | 40.0% | |
TTACAAATGTGTCACGTGGA+TGG | + | chr2.4:30851987-30852006 | None:intergenic | 40.0% | |
TTTCAGCATTTGATCGTCGA+CGG | + | chr2.4:30853998-30854017 | None:intergenic | 40.0% | |
TTTCTTCATTCAAGGCATGC+AGG | - | chr2.4:30853297-30853316 | MS.gene60932:intron | 40.0% | |
! | GAACACCAGGTCAAAAGTTT+TGG | - | chr2.4:30851289-30851308 | MS.gene60932:CDS | 40.0% |
! | GAAGTTTGCTTTGATGCAGA+AGG | - | chr2.4:30854183-30854202 | MS.gene60932:CDS | 40.0% |
! | TCATAAAGGCATGGATCAGA+AGG | + | chr2.4:30851591-30851610 | None:intergenic | 40.0% |
! | TGAATGGTGTCTAAAGCCTA+AGG | + | chr2.4:30853785-30853804 | None:intergenic | 40.0% |
!! | GTTGGTGGAATATTAGCCTT+AGG | - | chr2.4:30853766-30853785 | MS.gene60932:CDS | 40.0% |
!! | TGGAAAGGATGGATTAGTAG+TGG | + | chr2.4:30851967-30851986 | None:intergenic | 40.0% |
!! | TTGATGAGAGTATTGCACCT+AGG | - | chr2.4:30854208-30854227 | MS.gene60932:CDS | 40.0% |
!!! | AAGGTTTGGGATTTTGAAGC+TGG | - | chr2.4:30854027-30854046 | MS.gene60932:CDS | 40.0% |
AATGTGTCACGTGGATGGAA+AGG | + | chr2.4:30851982-30852001 | None:intergenic | 45.0% | |
AGGTGAACAGGGTAAAAGGT+TGG | + | chr2.4:30853362-30853381 | None:intergenic | 45.0% | |
ATGCTGGAAAGAATGGTTGC+TGG | + | chr2.4:30853220-30853239 | None:intergenic | 45.0% | |
GGTGAACAGGGTAAAAGGTT+GGG | + | chr2.4:30853361-30853380 | None:intergenic | 45.0% | |
GTCAAGGTGAACAGGGTAAA+AGG | + | chr2.4:30853366-30853385 | None:intergenic | 45.0% | |
TCATCAGCTGTGGGATTCTA+TGG | - | chr2.4:30853631-30853650 | MS.gene60932:intron | 45.0% | |
TCCCCAACTGTCTTAAGAGA+AGG | + | chr2.4:30852336-30852355 | None:intergenic | 45.0% | |
TCTTTCCAGCATCCAACCAT+TGG | - | chr2.4:30853228-30853247 | MS.gene60932:intron | 45.0% | |
TGCTGGAAAGAATGGTTGCT+GGG | + | chr2.4:30853219-30853238 | None:intergenic | 45.0% | |
TGGTTGGATGCTGGAAAGAA+TGG | + | chr2.4:30853227-30853246 | None:intergenic | 45.0% | |
TGTTCATAGCATCAACAGCG+AGG | - | chr2.4:30850981-30851000 | MS.gene60932:CDS | 45.0% | |
TTCTCTTAAGACAGTTGGGG+AGG | - | chr2.4:30852335-30852354 | MS.gene60932:intron | 45.0% | |
!! | GAAGGGATGATCATTGACTC+AGG | - | chr2.4:30854051-30854070 | MS.gene60932:CDS | 45.0% |
!!! | GGGATTTTGAAGCTGGTGAA+GGG | - | chr2.4:30854034-30854053 | MS.gene60932:CDS | 45.0% |
!!! | GGTTGCTGGGTCATTTTTTG+TGG | + | chr2.4:30853206-30853225 | None:intergenic | 45.0% |
!!! | TGGGATTTTGAAGCTGGTGA+AGG | - | chr2.4:30854033-30854052 | MS.gene60932:CDS | 45.0% |
CCAAAACCACTTACTCCCTC+CGG | - | chr2.4:30852476-30852495 | MS.gene60932:intron | 50.0% | |
TGTCACGTGGATGGAAAGGA+TGG | + | chr2.4:30851978-30851997 | None:intergenic | 50.0% | |
! | GGTGTTACAGTTGGAACACC+AGG | - | chr2.4:30851276-30851295 | MS.gene60932:CDS | 50.0% |
ATAGGACCGGAGGGAGTAAG+TGG | + | chr2.4:30852485-30852504 | None:intergenic | 55.0% | |
TTGATCGTCGACGGAGATGC+CGG | + | chr2.4:30853989-30854008 | None:intergenic | 55.0% | |
! | CCGGAGGGAGTAAGTGGTTT+TGG | + | chr2.4:30852479-30852498 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr2.4 | gene | 30850907 | 30854440 | 30850907 | ID=MS.gene60932 |
chr2.4 | mRNA | 30850907 | 30854440 | 30850907 | ID=MS.gene60932.t1;Parent=MS.gene60932 |
chr2.4 | exon | 30854017 | 30854440 | 30854017 | ID=MS.gene60932.t1.exon1;Parent=MS.gene60932.t1 |
chr2.4 | CDS | 30854017 | 30854440 | 30854017 | ID=cds.MS.gene60932.t1;Parent=MS.gene60932.t1 |
chr2.4 | exon | 30853731 | 30853899 | 30853731 | ID=MS.gene60932.t1.exon2;Parent=MS.gene60932.t1 |
chr2.4 | CDS | 30853731 | 30853899 | 30853731 | ID=cds.MS.gene60932.t1;Parent=MS.gene60932.t1 |
chr2.4 | exon | 30850907 | 30851732 | 30850907 | ID=MS.gene60932.t1.exon3;Parent=MS.gene60932.t1 |
chr2.4 | CDS | 30850907 | 30851732 | 30850907 | ID=cds.MS.gene60932.t1;Parent=MS.gene60932.t1 |
Gene Sequence |
Protein sequence |