Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61033.t1 | KEH16899.1 | 74.3 | 323 | 83 | 0 | 7 | 329 | 11 | 333 | 5.20E-143 | 517.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61033.t1 | Q9M1V2 | 53.6 | 317 | 144 | 3 | 14 | 329 | 9 | 323 | 1.4e-93 | 344.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61033.t1 | G7IXE9 | 74.3 | 323 | 83 | 0 | 7 | 329 | 11 | 333 | 3.7e-143 | 517.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene55382 | MS.gene61033 | PPI |
| MS.gene53169 | MS.gene61033 | PPI |
| MS.gene99693 | MS.gene61033 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61033.t1 | MTR_0071s0010 | 74.303 | 323 | 83 | 0 | 7 | 329 | 11 | 333 | 0.0 | 509 |
| MS.gene61033.t1 | MTR_3g046670 | 74.303 | 323 | 83 | 0 | 7 | 329 | 11 | 333 | 0.0 | 509 |
| MS.gene61033.t1 | MTR_3g435130 | 71.560 | 327 | 93 | 0 | 3 | 329 | 8 | 334 | 1.21e-178 | 498 |
| MS.gene61033.t1 | MTR_8g066220 | 69.419 | 327 | 99 | 1 | 3 | 329 | 8 | 333 | 4.39e-167 | 468 |
| MS.gene61033.t1 | MTR_8g066210 | 66.667 | 327 | 93 | 2 | 3 | 329 | 8 | 318 | 1.66e-154 | 436 |
| MS.gene61033.t1 | MTR_3g013500 | 49.530 | 319 | 160 | 1 | 11 | 329 | 20 | 337 | 6.27e-113 | 331 |
| MS.gene61033.t1 | MTR_7g007710 | 49.216 | 319 | 156 | 3 | 15 | 329 | 16 | 332 | 3.88e-110 | 324 |
| MS.gene61033.t1 | MTR_8g066280 | 76.596 | 188 | 44 | 0 | 142 | 329 | 22 | 209 | 1.39e-103 | 302 |
| MS.gene61033.t1 | MTR_7g007680 | 46.226 | 318 | 162 | 4 | 15 | 329 | 22 | 333 | 4.38e-103 | 307 |
| MS.gene61033.t1 | MTR_8g040820 | 45.768 | 319 | 168 | 4 | 15 | 329 | 27 | 344 | 2.62e-100 | 299 |
| MS.gene61033.t1 | MTR_8g035720 | 44.923 | 325 | 175 | 2 | 9 | 329 | 82 | 406 | 4.80e-99 | 298 |
| MS.gene61033.t1 | MTR_8g040490 | 44.410 | 322 | 175 | 3 | 11 | 329 | 23 | 343 | 1.12e-95 | 289 |
| MS.gene61033.t1 | MTR_8g040430 | 44.648 | 327 | 175 | 5 | 8 | 329 | 20 | 345 | 6.29e-95 | 285 |
| MS.gene61033.t1 | MTR_8g041790 | 45.768 | 319 | 149 | 6 | 16 | 329 | 26 | 325 | 5.68e-94 | 282 |
| MS.gene61033.t1 | MTR_3g434790 | 72.376 | 181 | 50 | 0 | 149 | 329 | 54 | 234 | 1.80e-93 | 278 |
| MS.gene61033.t1 | MTR_3g434790 | 61.224 | 49 | 19 | 0 | 3 | 51 | 9 | 57 | 4.35e-13 | 68.2 |
| MS.gene61033.t1 | MTR_8g040520 | 46.984 | 315 | 159 | 4 | 11 | 321 | 23 | 333 | 7.94e-90 | 273 |
| MS.gene61033.t1 | MTR_8g040250 | 41.270 | 315 | 145 | 6 | 19 | 329 | 15 | 293 | 3.18e-78 | 241 |
| MS.gene61033.t1 | MTR_8g014380 | 43.051 | 295 | 127 | 5 | 15 | 307 | 26 | 281 | 6.02e-77 | 237 |
| MS.gene61033.t1 | MTR_8g040820 | 46.575 | 219 | 113 | 3 | 115 | 329 | 27 | 245 | 9.35e-68 | 213 |
| MS.gene61033.t1 | MTR_8g040430 | 46.575 | 219 | 113 | 3 | 115 | 329 | 27 | 245 | 4.27e-65 | 206 |
| MS.gene61033.t1 | MTR_8g040730 | 52.410 | 166 | 70 | 5 | 74 | 234 | 40 | 201 | 1.67e-44 | 159 |
| MS.gene61033.t1 | MTR_8g040730 | 43.976 | 166 | 87 | 3 | 16 | 179 | 342 | 503 | 8.64e-35 | 133 |
| MS.gene61033.t1 | MTR_8g040710 | 48.993 | 149 | 74 | 1 | 173 | 319 | 134 | 282 | 1.68e-41 | 146 |
| MS.gene61033.t1 | MTR_8g066190 | 61.111 | 108 | 24 | 1 | 222 | 329 | 3 | 92 | 6.82e-35 | 122 |
| MS.gene61033.t1 | MTR_8g040315 | 43.307 | 127 | 71 | 1 | 203 | 329 | 7 | 132 | 2.82e-23 | 94.0 |
| MS.gene61033.t1 | MTR_8g066200 | 56.140 | 57 | 25 | 0 | 126 | 182 | 4 | 60 | 4.47e-14 | 66.6 |
| MS.gene61033.t1 | MTR_8g040410 | 35.955 | 89 | 39 | 2 | 213 | 301 | 75 | 145 | 1.67e-11 | 62.0 |
| MS.gene61033.t1 | MTR_8g040410 | 47.458 | 59 | 30 | 1 | 62 | 119 | 22 | 80 | 9.63e-11 | 59.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61033.t1 | AT3G45070 | 53.628 | 317 | 144 | 3 | 14 | 329 | 9 | 323 | 3.38e-115 | 336 |
| MS.gene61033.t1 | AT3G45070 | 53.628 | 317 | 144 | 3 | 14 | 329 | 14 | 328 | 4.00e-115 | 336 |
| MS.gene61033.t1 | AT3G45070 | 53.628 | 317 | 144 | 3 | 14 | 329 | 41 | 355 | 4.11e-115 | 337 |
| MS.gene61033.t1 | AT2G03760 | 48.780 | 328 | 162 | 2 | 2 | 329 | 3 | 324 | 4.05e-107 | 316 |
| MS.gene61033.t1 | AT3G45080 | 51.258 | 318 | 151 | 4 | 14 | 329 | 14 | 329 | 2.06e-104 | 309 |
| MS.gene61033.t1 | AT5G07010 | 45.846 | 325 | 174 | 2 | 6 | 329 | 33 | 356 | 4.84e-104 | 309 |
| MS.gene61033.t1 | AT1G13420 | 51.935 | 310 | 141 | 4 | 20 | 327 | 26 | 329 | 1.84e-101 | 301 |
| MS.gene61033.t1 | AT1G28170 | 51.057 | 331 | 155 | 6 | 1 | 329 | 1 | 326 | 1.16e-100 | 299 |
| MS.gene61033.t1 | AT2G03770 | 46.526 | 331 | 162 | 4 | 2 | 329 | 4 | 322 | 1.12e-99 | 297 |
| MS.gene61033.t1 | AT5G07000 | 44.410 | 322 | 175 | 3 | 11 | 329 | 24 | 344 | 1.65e-99 | 297 |
| MS.gene61033.t1 | AT2G03750 | 46.605 | 324 | 170 | 3 | 6 | 329 | 30 | 350 | 6.50e-95 | 286 |
| MS.gene61033.t1 | AT4G26280 | 48.726 | 314 | 140 | 3 | 10 | 321 | 7 | 301 | 1.76e-92 | 278 |
| MS.gene61033.t1 | AT5G43690 | 45.260 | 327 | 174 | 4 | 6 | 329 | 7 | 331 | 7.64e-92 | 277 |
| MS.gene61033.t1 | AT2G14920 | 45.283 | 318 | 160 | 5 | 20 | 329 | 22 | 333 | 1.02e-87 | 266 |
| MS.gene61033.t1 | AT1G13430 | 46.201 | 329 | 155 | 5 | 20 | 329 | 26 | 351 | 2.60e-84 | 258 |
| MS.gene61033.t1 | AT1G18590 | 43.987 | 316 | 161 | 7 | 20 | 327 | 34 | 341 | 1.48e-81 | 251 |
| MS.gene61033.t1 | AT2G27570 | 43.161 | 329 | 131 | 4 | 1 | 329 | 1 | 273 | 3.00e-81 | 248 |
| MS.gene61033.t1 | AT1G74100 | 42.857 | 315 | 166 | 5 | 20 | 327 | 26 | 333 | 4.74e-81 | 249 |
| MS.gene61033.t1 | AT1G74090 | 43.492 | 315 | 164 | 5 | 20 | 327 | 38 | 345 | 9.34e-75 | 234 |
Find 63 sgRNAs with CRISPR-Local
Find 78 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCATGTTCTTGTTCCCTTCT+TGG | 0.120522 | 8.1:-38176720 | MS.gene61033:CDS |
| TCATATTCTTCCAAGTATTT+TGG | 0.152482 | 8.1:+38177025 | None:intergenic |
| TCAACCAATATCAAGGATTT+TGG | 0.182538 | 8.1:-38176934 | MS.gene61033:CDS |
| CAAACTTTGCCATTAGAAAA+AGG | 0.259636 | 8.1:-38176974 | MS.gene61033:CDS |
| GAGCCAGATGGTACCTGTTT+TGG | 0.275972 | 8.1:+38176826 | None:intergenic |
| CTTACAAGTTGAGTCTTTCA+TGG | 0.279501 | 8.1:+38176595 | None:intergenic |
| GTTGAGTCTTTCATGGATTT+CGG | 0.301718 | 8.1:+38176602 | None:intergenic |
| AGGATATTGGAAGGAAAGTT+TGG | 0.301809 | 8.1:-38176411 | MS.gene61033:CDS |
| CTCTCGAATGCCTCTTCTAA+TGG | 0.302803 | 8.1:+38176482 | None:intergenic |
| GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8.1:-38176424 | MS.gene61033:CDS |
| TGAGTCCAATGGGACCCTTT+TGG | 0.353951 | 8.1:-38176445 | MS.gene61033:CDS |
| AAGACTGGAGAATTGCCTTT+TGG | 0.358374 | 8.1:-38176206 | MS.gene61033:CDS |
| CAATCCTGTGCCAAAATACT+TGG | 0.368022 | 8.1:-38177035 | MS.gene61033:CDS |
| TATATCACCAACCACACCTT+TGG | 0.375797 | 8.1:+38176274 | None:intergenic |
| ACACTATCACTGAAGAGAAA+TGG | 0.382705 | 8.1:-38176100 | MS.gene61033:CDS |
| AGTGAAACAAAAGTGTCTTT+AGG | 0.390627 | 8.1:+38176551 | None:intergenic |
| CACTATCACTGAAGAGAAAT+GGG | 0.395075 | 8.1:-38176099 | MS.gene61033:CDS |
| GGAAGTGTTCCCCTACTTTG+TGG | 0.402745 | 8.1:+38176503 | None:intergenic |
| TTTGCCAAAATCCTTGATAT+TGG | 0.410971 | 8.1:+38176930 | None:intergenic |
| CATGAAAGACTCAACTTGTA+AGG | 0.425728 | 8.1:-38176594 | MS.gene61033:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8.1:+38176430 | None:intergenic |
| CAAGTTAAGACCACAAAGTA+GGG | 0.432948 | 8.1:-38176513 | MS.gene61033:CDS |
| CTACGATTATATCTGTATCA+TGG | 0.442118 | 8.1:+38176858 | None:intergenic |
| GTAGCTAGCACTGCCAAAAC+AGG | 0.454395 | 8.1:-38176839 | MS.gene61033:CDS |
| TGCTCCCAAAAGGGTCCCAT+TGG | 0.483845 | 8.1:+38176440 | None:intergenic |
| TGTAGAGGAGTGAGTCCAAT+GGG | 0.487163 | 8.1:-38176455 | MS.gene61033:CDS |
| TTTCGAGAAGCTGAGCAACT+TGG | 0.501029 | 8.1:-38176237 | MS.gene61033:CDS |
| TGATTGTTATCATGAATGTC+TGG | 0.504371 | 8.1:+38176764 | None:intergenic |
| TCACAGATGAAATGATTGAA+TGG | 0.504802 | 8.1:-38176127 | MS.gene61033:CDS |
| GGGGACAATGAGTCTAGATC+AGG | 0.513870 | 8.1:+38176665 | None:intergenic |
| TACGATTATATCTGTATCAT+GGG | 0.520155 | 8.1:+38176859 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8.1:+38176431 | None:intergenic |
| AGATGTGTAGAGAACAGCCT+TGG | 0.529287 | 8.1:+38176641 | None:intergenic |
| CAAACCACAAAAGATCTTCA+AGG | 0.531980 | 8.1:-38176911 | MS.gene61033:CDS |
| CTGCCAAAACAGGTACCATC+TGG | 0.534504 | 8.1:-38176829 | MS.gene61033:CDS |
| ACCTACGTCAACCAATATCA+AGG | 0.538612 | 8.1:-38176941 | MS.gene61033:CDS |
| TGTGTAGAGAACAGCCTTGG+AGG | 0.538978 | 8.1:+38176644 | None:intergenic |
| ACAAGTTAAGACCACAAAGT+AGG | 0.539641 | 8.1:-38176514 | MS.gene61033:CDS |
| TGAGGGTTGTTTGTAAGCAA+AGG | 0.541184 | 8.1:+38176740 | None:intergenic |
| AACTTGGAGATTAATAAGAC+TGG | 0.547100 | 8.1:-38176221 | MS.gene61033:CDS |
| GAAGAGAAATGGGCTAAACA+TGG | 0.549761 | 8.1:-38176089 | MS.gene61033:CDS |
| GTAAAGGTTAAGTTCCAAGA+AGG | 0.550031 | 8.1:+38176706 | None:intergenic |
| TTCTTTCGTCGAGGCCAAGT+TGG | 0.555525 | 8.1:-38176167 | MS.gene61033:CDS |
| ATATTTCTTGCGGTGGAGCA+AGG | 0.556103 | 8.1:+38176787 | None:intergenic |
| TGTTAATGCTTTGAGCCAGA+TGG | 0.562666 | 8.1:+38176814 | None:intergenic |
| GTGTAGAGAACAGCCTTGGA+GGG | 0.567636 | 8.1:+38176645 | None:intergenic |
| GAAGAATCCAAAGGTGTGGT+TGG | 0.575305 | 8.1:-38176281 | MS.gene61033:CDS |
| TAGACTCATTGTCCCCTCCA+AGG | 0.599527 | 8.1:-38176658 | MS.gene61033:CDS |
| TAAAGGTTAAGTTCCAAGAA+GGG | 0.605054 | 8.1:+38176707 | None:intergenic |
| AAGAAGGGAACAAGAACATG+AGG | 0.606385 | 8.1:+38176722 | None:intergenic |
| TTGTAGAGGAGTGAGTCCAA+TGG | 0.609516 | 8.1:-38176456 | MS.gene61033:CDS |
| TGTAGAGAACAGCCTTGGAG+GGG | 0.614828 | 8.1:+38176646 | None:intergenic |
| AAGAGAAATGGGCTAAACAT+GGG | 0.620553 | 8.1:-38176088 | MS.gene61033:CDS |
| TGTCTGGATATTTCTTGCGG+TGG | 0.622673 | 8.1:+38176780 | None:intergenic |
| GCATGTATTAGGATATTGGA+AGG | 0.624163 | 8.1:-38176420 | MS.gene61033:CDS |
| GGGAACACTTCCATTAGAAG+AGG | 0.629233 | 8.1:-38176492 | MS.gene61033:CDS |
| AGAAGAAGAATCCAAAGGTG+TGG | 0.632605 | 8.1:-38176285 | MS.gene61033:CDS |
| ACAAAAGAAGAAGAATCCAA+AGG | 0.648101 | 8.1:-38176290 | MS.gene61033:CDS |
| GAATGTCTGGATATTTCTTG+CGG | 0.652699 | 8.1:+38176777 | None:intergenic |
| GAAAGACTCAACTTGTAAGG+TGG | 0.669531 | 8.1:-38176591 | MS.gene61033:CDS |
| AGAAGGGAACAAGAACATGA+GGG | 0.690046 | 8.1:+38176723 | None:intergenic |
| TCCTTGATATTGGTTGACGT+AGG | 0.697450 | 8.1:+38176940 | None:intergenic |
| AAGTTAAGACCACAAAGTAG+GGG | 0.697738 | 8.1:-38176512 | MS.gene61033:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTATTTTGTTTACCAAA+AGG | + | chr8.1:38176931-38176950 | None:intergenic | 15.0% |
| ! | ATCTCTTCCAAATAAAAACT+AGG | + | chr8.1:38176784-38176803 | None:intergenic | 25.0% |
| ! | TACGATTATATCTGTATCAT+GGG | + | chr8.1:38176263-38176282 | None:intergenic | 25.0% |
| !! | AATAATATTTTCTTTCGTCG+AGG | - | chr8.1:38176943-38176962 | MS.gene61033:CDS | 25.0% |
| !! | GAACATCTTTTCTAATGTAA+AGG | + | chr8.1:38176432-38176451 | None:intergenic | 25.0% |
| !! | GATTCTTCTTCTTTTGTAAA+TGG | + | chr8.1:38176826-38176845 | None:intergenic | 25.0% |
| !! | TCATATTCTTCCAAGTATTT+TGG | + | chr8.1:38176097-38176116 | None:intergenic | 25.0% |
| !!! | AATGAAGCCTAGTTTTTATT+TGG | - | chr8.1:38176774-38176793 | MS.gene61033:CDS | 25.0% |
| AACTTGGAGATTAATAAGAC+TGG | - | chr8.1:38176898-38176917 | MS.gene61033:CDS | 30.0% | |
| ACAAAAGAAGAAGAATCCAA+AGG | - | chr8.1:38176829-38176848 | MS.gene61033:CDS | 30.0% | |
| CAAACTTTGCCATTAGAAAA+AGG | - | chr8.1:38176145-38176164 | MS.gene61033:CDS | 30.0% | |
| CTACGATTATATCTGTATCA+TGG | + | chr8.1:38176264-38176283 | None:intergenic | 30.0% | |
| TAAAGGTTAAGTTCCAAGAA+GGG | + | chr8.1:38176415-38176434 | None:intergenic | 30.0% | |
| TCACAGATGAAATGATTGAA+TGG | - | chr8.1:38176992-38177011 | MS.gene61033:CDS | 30.0% | |
| TGATTGTTATCATGAATGTC+TGG | + | chr8.1:38176358-38176377 | None:intergenic | 30.0% | |
| TTTGCCAAAATCCTTGATAT+TGG | + | chr8.1:38176192-38176211 | None:intergenic | 30.0% | |
| ! | TCAACCAATATCAAGGATTT+TGG | - | chr8.1:38176185-38176204 | MS.gene61033:CDS | 30.0% |
| ! | TCAGTCATACCTTTTTCTAA+TGG | + | chr8.1:38176157-38176176 | None:intergenic | 30.0% |
| !! | AAGACACTTTTGTTTCACTT+TGG | - | chr8.1:38176572-38176591 | MS.gene61033:CDS | 30.0% |
| !! | AGTGAAACAAAAGTGTCTTT+AGG | + | chr8.1:38176571-38176590 | None:intergenic | 30.0% |
| AAGTTAAGACCACAAAGTAG+GGG | - | chr8.1:38176607-38176626 | MS.gene61033:CDS | 35.0% | |
| ACAAGTTAAGACCACAAAGT+AGG | - | chr8.1:38176605-38176624 | MS.gene61033:CDS | 35.0% | |
| ACACTATCACTGAAGAGAAA+TGG | - | chr8.1:38177019-38177038 | MS.gene61033:CDS | 35.0% | |
| AGGATATTGGAAGGAAAGTT+TGG | - | chr8.1:38176708-38176727 | MS.gene61033:CDS | 35.0% | |
| CAAACCACAAAAGATCTTCA+AGG | - | chr8.1:38176208-38176227 | MS.gene61033:CDS | 35.0% | |
| CAAGTTAAGACCACAAAGTA+GGG | - | chr8.1:38176606-38176625 | MS.gene61033:CDS | 35.0% | |
| CACTATCACTGAAGAGAAAT+GGG | - | chr8.1:38177020-38177039 | MS.gene61033:CDS | 35.0% | |
| CATGAAAGACTCAACTTGTA+AGG | - | chr8.1:38176525-38176544 | MS.gene61033:CDS | 35.0% | |
| GAATGTCTGGATATTTCTTG+CGG | + | chr8.1:38176345-38176364 | None:intergenic | 35.0% | |
| GCATGTATTAGGATATTGGA+AGG | - | chr8.1:38176699-38176718 | MS.gene61033:CDS | 35.0% | |
| GTAAAGGTTAAGTTCCAAGA+AGG | + | chr8.1:38176416-38176435 | None:intergenic | 35.0% | |
| GTTGAGTCTTTCATGGATTT+CGG | + | chr8.1:38176520-38176539 | None:intergenic | 35.0% | |
| ! | AACTCCTTGAAGATCTTTTG+TGG | + | chr8.1:38176215-38176234 | None:intergenic | 35.0% |
| ! | CTTACAAGTTGAGTCTTTCA+TGG | + | chr8.1:38176527-38176546 | None:intergenic | 35.0% |
| ! | GGAAGAGATTGCTAAGTTTT+TGG | - | chr8.1:38176795-38176814 | MS.gene61033:CDS | 35.0% |
| !! | AAGAGAAATGGGCTAAACAT+GGG | - | chr8.1:38177031-38177050 | MS.gene61033:CDS | 35.0% |
| !! | GATTTTTGCTATCTCCAACT+TGG | + | chr8.1:38176969-38176988 | None:intergenic | 35.0% |
| AAGAAGGGAACAAGAACATG+AGG | + | chr8.1:38176400-38176419 | None:intergenic | 40.0% | |
| ACCTACGTCAACCAATATCA+AGG | - | chr8.1:38176178-38176197 | MS.gene61033:CDS | 40.0% | |
| AGAAGAAGAATCCAAAGGTG+TGG | - | chr8.1:38176834-38176853 | MS.gene61033:CDS | 40.0% | |
| AGAAGGGAACAAGAACATGA+GGG | + | chr8.1:38176399-38176418 | None:intergenic | 40.0% | |
| CAATCCTGTGCCAAAATACT+TGG | - | chr8.1:38176084-38176103 | MS.gene61033:CDS | 40.0% | |
| CCTAATACATGCTCCCAAAA+GGG | + | chr8.1:38176691-38176710 | None:intergenic | 40.0% | |
| GAAAGACTCAACTTGTAAGG+TGG | - | chr8.1:38176528-38176547 | MS.gene61033:CDS | 40.0% | |
| TATATCACCAACCACACCTT+TGG | + | chr8.1:38176848-38176867 | None:intergenic | 40.0% | |
| TCATGTTCTTGTTCCCTTCT+TGG | - | chr8.1:38176399-38176418 | MS.gene61033:CDS | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | + | chr8.1:38176692-38176711 | None:intergenic | 40.0% | |
| TGAGGGTTGTTTGTAAGCAA+AGG | + | chr8.1:38176382-38176401 | None:intergenic | 40.0% | |
| ! | AAGACTGGAGAATTGCCTTT+TGG | - | chr8.1:38176913-38176932 | MS.gene61033:CDS | 40.0% |
| ! | GCATTCGAGAGTTTTTGTAG+AGG | - | chr8.1:38176649-38176668 | MS.gene61033:CDS | 40.0% |
| ! | GGGAGCATGTATTAGGATAT+TGG | - | chr8.1:38176695-38176714 | MS.gene61033:CDS | 40.0% |
| ! | TCCTTGATATTGGTTGACGT+AGG | + | chr8.1:38176182-38176201 | None:intergenic | 40.0% |
| ! | TGTTAATGCTTTGAGCCAGA+TGG | + | chr8.1:38176308-38176327 | None:intergenic | 40.0% |
| !! | GAAGAGAAATGGGCTAAACA+TGG | - | chr8.1:38177030-38177049 | MS.gene61033:CDS | 40.0% |
| !!! | TCTTCCAAGTATTTTGGCAC+AGG | + | chr8.1:38176091-38176110 | None:intergenic | 40.0% |
| AGATGTGTAGAGAACAGCCT+TGG | + | chr8.1:38176481-38176500 | None:intergenic | 45.0% | |
| ATATTTCTTGCGGTGGAGCA+AGG | + | chr8.1:38176335-38176354 | None:intergenic | 45.0% | |
| CTCTCGAATGCCTCTTCTAA+TGG | + | chr8.1:38176640-38176659 | None:intergenic | 45.0% | |
| GGGAACACTTCCATTAGAAG+AGG | - | chr8.1:38176627-38176646 | MS.gene61033:CDS | 45.0% | |
| TGTAGAGGAGTGAGTCCAAT+GGG | - | chr8.1:38176664-38176683 | MS.gene61033:CDS | 45.0% | |
| TGTCTGGATATTTCTTGCGG+TGG | + | chr8.1:38176342-38176361 | None:intergenic | 45.0% | |
| TTGTAGAGGAGTGAGTCCAA+TGG | - | chr8.1:38176663-38176682 | MS.gene61033:CDS | 45.0% | |
| TTTCGAGAAGCTGAGCAACT+TGG | - | chr8.1:38176882-38176901 | MS.gene61033:CDS | 45.0% | |
| ! | GAAGAATCCAAAGGTGTGGT+TGG | - | chr8.1:38176838-38176857 | MS.gene61033:CDS | 45.0% |
| !! | CCCTTTTGGGAGCATGTATT+AGG | - | chr8.1:38176688-38176707 | MS.gene61033:CDS | 45.0% |
| CTGCCAAAACAGGTACCATC+TGG | - | chr8.1:38176290-38176309 | MS.gene61033:CDS | 50.0% | |
| GGGGACAATGAGTCTAGATC+AGG | + | chr8.1:38176457-38176476 | None:intergenic | 50.0% | |
| GTAGCTAGCACTGCCAAAAC+AGG | - | chr8.1:38176280-38176299 | MS.gene61033:CDS | 50.0% | |
| GTGTAGAGAACAGCCTTGGA+GGG | + | chr8.1:38176477-38176496 | None:intergenic | 50.0% | |
| TAGACTCATTGTCCCCTCCA+AGG | - | chr8.1:38176461-38176480 | MS.gene61033:CDS | 50.0% | |
| TGTAGAGAACAGCCTTGGAG+GGG | + | chr8.1:38176476-38176495 | None:intergenic | 50.0% | |
| TGTGTAGAGAACAGCCTTGG+AGG | + | chr8.1:38176478-38176497 | None:intergenic | 50.0% | |
| TTCTTTCGTCGAGGCCAAGT+TGG | - | chr8.1:38176952-38176971 | MS.gene61033:CDS | 50.0% | |
| ! | GAGCCAGATGGTACCTGTTT+TGG | + | chr8.1:38176296-38176315 | None:intergenic | 50.0% |
| ! | GAGTCCAATGGGACCCTTTT+GGG | - | chr8.1:38176675-38176694 | MS.gene61033:CDS | 50.0% |
| ! | TGAGTCCAATGGGACCCTTT+TGG | - | chr8.1:38176674-38176693 | MS.gene61033:CDS | 50.0% |
| !! | GGAAGTGTTCCCCTACTTTG+TGG | + | chr8.1:38176619-38176638 | None:intergenic | 50.0% |
| TGCTCCCAAAAGGGTCCCAT+TGG | + | chr8.1:38176682-38176701 | None:intergenic | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38176076 | 38177065 | 38176076 | ID=MS.gene61033 |
| chr8.1 | mRNA | 38176076 | 38177065 | 38176076 | ID=MS.gene61033.t1;Parent=MS.gene61033 |
| chr8.1 | exon | 38176076 | 38177065 | 38176076 | ID=MS.gene61033.t1.exon1;Parent=MS.gene61033.t1 |
| chr8.1 | CDS | 38176076 | 38177065 | 38176076 | ID=cds.MS.gene61033.t1;Parent=MS.gene61033.t1 |
| Gene Sequence |
| Protein sequence |
