Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61034.t1 | XP_003628738.1 | 96.4 | 333 | 12 | 0 | 1 | 333 | 1 | 333 | 6.10E-192 | 679.9 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61034.t1 | P52839 | 51.9 | 324 | 149 | 4 | 11 | 333 | 7 | 324 | 7.8e-95 | 348.6 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61034.t1 | G7LGA0 | 96.4 | 333 | 12 | 0 | 1 | 333 | 1 | 333 | 4.4e-192 | 679.9 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene61034 | MS.gene53169 | PPI |
MS.gene61034 | MS.gene55382 | PPI |
MS.gene61034 | MS.gene99693 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61034.t1 | MTR_8g066220 | 96.396 | 333 | 12 | 0 | 1 | 333 | 1 | 333 | 0.0 | 665 |
MS.gene61034.t1 | MTR_3g435130 | 74.251 | 334 | 85 | 1 | 1 | 333 | 1 | 334 | 0.0 | 521 |
MS.gene61034.t1 | MTR_0071s0010 | 70.303 | 330 | 97 | 1 | 5 | 333 | 4 | 333 | 1.00e-177 | 495 |
MS.gene61034.t1 | MTR_3g046670 | 70.303 | 330 | 97 | 1 | 5 | 333 | 4 | 333 | 1.00e-177 | 495 |
MS.gene61034.t1 | MTR_8g066210 | 68.769 | 333 | 89 | 1 | 1 | 333 | 1 | 318 | 1.09e-169 | 474 |
MS.gene61034.t1 | MTR_7g007710 | 52.174 | 322 | 145 | 4 | 18 | 333 | 14 | 332 | 7.15e-118 | 343 |
MS.gene61034.t1 | MTR_3g013500 | 51.572 | 318 | 154 | 0 | 16 | 333 | 20 | 337 | 2.04e-117 | 343 |
MS.gene61034.t1 | MTR_7g007680 | 48.903 | 319 | 155 | 4 | 18 | 333 | 20 | 333 | 4.56e-111 | 328 |
MS.gene61034.t1 | MTR_8g040820 | 48.137 | 322 | 163 | 3 | 16 | 333 | 23 | 344 | 3.60e-109 | 322 |
MS.gene61034.t1 | MTR_8g066280 | 78.075 | 187 | 41 | 0 | 147 | 333 | 23 | 209 | 3.98e-107 | 311 |
MS.gene61034.t1 | MTR_8g040490 | 45.783 | 332 | 167 | 3 | 5 | 333 | 22 | 343 | 2.14e-103 | 309 |
MS.gene61034.t1 | MTR_8g035720 | 46.061 | 330 | 173 | 4 | 9 | 333 | 77 | 406 | 7.17e-103 | 308 |
MS.gene61034.t1 | MTR_8g040430 | 44.940 | 336 | 170 | 4 | 3 | 333 | 20 | 345 | 6.07e-102 | 303 |
MS.gene61034.t1 | MTR_3g434790 | 75.000 | 192 | 48 | 0 | 142 | 333 | 43 | 234 | 1.18e-101 | 298 |
MS.gene61034.t1 | MTR_3g434790 | 59.649 | 57 | 22 | 1 | 1 | 56 | 1 | 57 | 2.69e-14 | 71.6 |
MS.gene61034.t1 | MTR_8g041790 | 47.003 | 317 | 145 | 7 | 22 | 333 | 27 | 325 | 7.24e-97 | 290 |
MS.gene61034.t1 | MTR_8g040520 | 48.318 | 327 | 152 | 5 | 5 | 327 | 22 | 335 | 4.02e-96 | 289 |
MS.gene61034.t1 | MTR_8g040250 | 49.802 | 253 | 119 | 5 | 85 | 333 | 45 | 293 | 3.30e-85 | 259 |
MS.gene61034.t1 | MTR_8g014380 | 44.295 | 298 | 126 | 5 | 16 | 311 | 22 | 281 | 1.72e-82 | 251 |
MS.gene61034.t1 | MTR_8g040820 | 51.376 | 218 | 102 | 3 | 120 | 333 | 28 | 245 | 8.28e-77 | 236 |
MS.gene61034.t1 | MTR_8g040430 | 47.248 | 218 | 111 | 2 | 120 | 333 | 28 | 245 | 1.21e-69 | 218 |
MS.gene61034.t1 | MTR_8g040730 | 53.614 | 166 | 69 | 5 | 78 | 238 | 39 | 201 | 5.99e-46 | 164 |
MS.gene61034.t1 | MTR_8g040730 | 46.914 | 162 | 81 | 3 | 17 | 176 | 338 | 496 | 4.79e-38 | 142 |
MS.gene61034.t1 | MTR_8g040710 | 49.664 | 149 | 73 | 1 | 177 | 323 | 134 | 282 | 4.77e-44 | 152 |
MS.gene61034.t1 | MTR_8g066190 | 60.550 | 109 | 25 | 1 | 225 | 333 | 2 | 92 | 9.36e-37 | 127 |
MS.gene61034.t1 | MTR_8g040315 | 48.092 | 131 | 67 | 1 | 203 | 333 | 3 | 132 | 1.47e-29 | 110 |
MS.gene61034.t1 | MTR_8g066200 | 77.778 | 36 | 8 | 0 | 151 | 186 | 25 | 60 | 2.26e-14 | 67.4 |
MS.gene61034.t1 | MTR_8g040410 | 39.326 | 89 | 36 | 1 | 217 | 305 | 75 | 145 | 1.71e-13 | 67.4 |
MS.gene61034.t1 | MTR_8g040410 | 48.333 | 60 | 29 | 1 | 66 | 123 | 21 | 80 | 7.59e-12 | 62.8 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61034.t1 | AT3G45070 | 50.625 | 320 | 156 | 2 | 15 | 333 | 5 | 323 | 1.26e-113 | 332 |
MS.gene61034.t1 | AT3G45070 | 50.625 | 320 | 156 | 2 | 15 | 333 | 10 | 328 | 1.29e-113 | 333 |
MS.gene61034.t1 | AT3G45070 | 50.625 | 320 | 156 | 2 | 15 | 333 | 37 | 355 | 1.75e-113 | 333 |
MS.gene61034.t1 | AT2G03760 | 51.543 | 324 | 150 | 4 | 11 | 333 | 7 | 324 | 2.93e-111 | 327 |
MS.gene61034.t1 | AT5G07010 | 47.692 | 325 | 167 | 2 | 11 | 333 | 33 | 356 | 5.55e-110 | 324 |
MS.gene61034.t1 | AT3G45080 | 49.844 | 321 | 158 | 3 | 15 | 333 | 10 | 329 | 1.02e-107 | 318 |
MS.gene61034.t1 | AT2G03770 | 48.466 | 326 | 157 | 2 | 1 | 326 | 1 | 315 | 1.71e-106 | 314 |
MS.gene61034.t1 | AT5G07000 | 47.205 | 322 | 165 | 3 | 16 | 333 | 24 | 344 | 1.67e-102 | 305 |
MS.gene61034.t1 | AT2G03750 | 46.224 | 331 | 176 | 2 | 3 | 333 | 22 | 350 | 2.04e-100 | 300 |
MS.gene61034.t1 | AT1G13420 | 49.518 | 311 | 150 | 4 | 25 | 333 | 26 | 331 | 3.66e-100 | 298 |
MS.gene61034.t1 | AT5G43690 | 45.872 | 327 | 171 | 4 | 11 | 333 | 7 | 331 | 5.99e-99 | 295 |
MS.gene61034.t1 | AT4G26280 | 47.452 | 314 | 145 | 2 | 15 | 326 | 7 | 302 | 7.03e-98 | 292 |
MS.gene61034.t1 | AT1G28170 | 48.923 | 325 | 160 | 5 | 11 | 333 | 6 | 326 | 5.16e-95 | 285 |
MS.gene61034.t1 | AT1G18590 | 46.667 | 315 | 153 | 7 | 25 | 331 | 34 | 341 | 3.08e-92 | 279 |
MS.gene61034.t1 | AT1G74100 | 44.872 | 312 | 163 | 4 | 25 | 331 | 26 | 333 | 1.39e-91 | 277 |
MS.gene61034.t1 | AT2G14920 | 44.904 | 314 | 166 | 3 | 25 | 333 | 22 | 333 | 2.65e-91 | 276 |
MS.gene61034.t1 | AT1G74090 | 45.397 | 315 | 157 | 6 | 25 | 331 | 38 | 345 | 7.16e-84 | 258 |
MS.gene61034.t1 | AT1G13430 | 43.598 | 328 | 164 | 4 | 25 | 333 | 26 | 351 | 1.22e-82 | 254 |
MS.gene61034.t1 | AT2G27570 | 40.439 | 319 | 135 | 3 | 15 | 333 | 10 | 273 | 2.05e-78 | 241 |
Find 72 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TCATCTTCTTTCAAGTATTT+TGG | 0.168021 | 8.1:+38182717 | None:intergenic |
GGATGGTTGTTATGAATATT+TGG | 0.171994 | 8.1:+38182456 | None:intergenic |
TTCATGAATATCTAGGATTT+TGG | 0.173247 | 8.1:-38182626 | MS.gene61034:CDS |
TTGGACTCTTTCACAGATTT+TGG | 0.188413 | 8.1:+38182297 | None:intergenic |
ACCATTGGATTCTTCTTCTT+TGG | 0.201606 | 8.1:+38181984 | None:intergenic |
AGCTCTTTCAAAACAAAATT+AGG | 0.246214 | 8.1:+38182033 | None:intergenic |
GAGCCAAGTGGTACCTGATT+TGG | 0.249783 | 8.1:+38182518 | None:intergenic |
ATAGTTGTTGAAGAGAAATT+TGG | 0.254759 | 8.1:-38181793 | MS.gene61034:CDS |
TCATGTTCTCGTTCCCTTCA+TGG | 0.279826 | 8.1:-38182415 | MS.gene61034:CDS |
CGACTTCTTATGGACCCTTT+TGG | 0.290771 | 8.1:-38182140 | MS.gene61034:CDS |
AGCCAAGTGGTACCTGATTT+GGG | 0.328372 | 8.1:+38182519 | None:intergenic |
TGTAGAGGAACGACTTCTTA+TGG | 0.332025 | 8.1:-38182150 | MS.gene61034:CDS |
CTCTCAACAGCCTCTTCTAA+TGG | 0.341088 | 8.1:+38182177 | None:intergenic |
GATTCTTCTTCTTTGGAGAA+TGG | 0.361174 | 8.1:+38181991 | None:intergenic |
CCCACCTTTCATGAATATCT+AGG | 0.366679 | 8.1:-38182633 | MS.gene61034:CDS |
GGGATCATGTATTAGGATAC+TGG | 0.379480 | 8.1:-38182119 | MS.gene61034:CDS |
CTTTGAGAAGCTTAGCAACT+TGG | 0.382954 | 8.1:-38181932 | MS.gene61034:CDS |
CAAACCTTGCCATTAGTAGA+AGG | 0.385199 | 8.1:-38182666 | MS.gene61034:CDS |
AGTGAAACAAAAGTGTCTTT+AGG | 0.390627 | 8.1:+38182246 | None:intergenic |
TAAAGCACCTTGGAGAATCT+TGG | 0.393010 | 8.1:+38182596 | None:intergenic |
GTCTTGGCAAAGTTGGAGAT+TGG | 0.394578 | 8.1:-38181855 | MS.gene61034:CDS |
AAATCTTCTCACAACTGAAA+TGG | 0.406540 | 8.1:-38181830 | MS.gene61034:CDS |
TTGTGTGTGCAGAAGATTCT+TGG | 0.414959 | 8.1:+38182336 | None:intergenic |
GAATATTTGGATATTTGTTA+CGG | 0.427020 | 8.1:+38182469 | None:intergenic |
TCGATCCACCCTTCTACTAA+TGG | 0.428566 | 8.1:+38182657 | None:intergenic |
TCCTAATACATGATCCCAAA+AGG | 0.434502 | 8.1:+38182125 | None:intergenic |
TTAGTTACAAATCCCAAATC+AGG | 0.445208 | 8.1:-38182531 | MS.gene61034:CDS |
GGGGATAGTGAATTGAGTTC+AGG | 0.447296 | 8.1:+38182360 | None:intergenic |
TAAGATGATATCTGTATCAA+TGG | 0.461006 | 8.1:+38182551 | None:intergenic |
AAAGCACCTTGGAGAATCTT+GGG | 0.462402 | 8.1:+38182597 | None:intergenic |
CAACATCGGTTTCATAGTAA+AGG | 0.489088 | 8.1:+38182385 | None:intergenic |
GAAGAGAAATTTGGTAAACA+TGG | 0.492194 | 8.1:-38181784 | MS.gene61034:CDS |
AAGAGAAATTTGGTAAACAT+GGG | 0.504220 | 8.1:-38181783 | MS.gene61034:CDS |
ACTTGGAGATCAATAAGAAC+GGG | 0.505418 | 8.1:-38181915 | MS.gene61034:CDS |
TGTGAAAGAGTCCAACTGTA+AGG | 0.508848 | 8.1:-38182289 | MS.gene61034:CDS |
AGGATACTGGAAGGAAAGCT+TGG | 0.510183 | 8.1:-38182106 | MS.gene61034:CDS |
GTAAAGGTTAATCTCCATGA+AGG | 0.526084 | 8.1:+38182401 | None:intergenic |
TCCTAGATATTCATGAAAGG+TGG | 0.528145 | 8.1:+38182632 | None:intergenic |
TATATCATCAACCACACCAT+TGG | 0.528516 | 8.1:+38181969 | None:intergenic |
AAGATACACCACCTTACAGT+TGG | 0.530002 | 8.1:+38182278 | None:intergenic |
AATCTCCAACTTTGCCAAGA+CGG | 0.543241 | 8.1:+38181857 | None:intergenic |
TTTGAAAAGATAAAGCACCT+TGG | 0.549529 | 8.1:+38182586 | None:intergenic |
TTTGCTCCCAAGATTCTCCA+AGG | 0.560201 | 8.1:-38182603 | MS.gene61034:CDS |
CCTAATACATGATCCCAAAA+GGG | 0.563200 | 8.1:+38182126 | None:intergenic |
CCTAGATATTCATGAAAGGT+GGG | 0.570706 | 8.1:+38182633 | None:intergenic |
GGGAACGAGAACATGAGGGT+TGG | 0.570819 | 8.1:+38182422 | None:intergenic |
CCACCCTTCTACTAATGGCA+AGG | 0.577237 | 8.1:+38182662 | None:intergenic |
ATCCCAAATCAGGTACCACT+TGG | 0.590361 | 8.1:-38182521 | MS.gene61034:CDS |
TGACTTAGGTCAAGAATGCA+AGG | 0.590461 | 8.1:-38182697 | MS.gene61034:CDS |
GGTTGGAAGTGAGCAAAGGA+TGG | 0.599932 | 8.1:+38182439 | None:intergenic |
AAGCTTGGAAAGGCCAGAGA+AGG | 0.600318 | 8.1:-38182091 | MS.gene61034:CDS |
AACTTGGAGATCAATAAGAA+CGG | 0.603753 | 8.1:-38181916 | MS.gene61034:CDS |
AAACCTTGCCATTAGTAGAA+GGG | 0.603804 | 8.1:-38182665 | MS.gene61034:CDS |
ATGAAGGGAACGAGAACATG+AGG | 0.607885 | 8.1:+38182417 | None:intergenic |
AAGCTAAGAGCACAAAGTAG+AGG | 0.608022 | 8.1:-38182207 | MS.gene61034:CDS |
TAAAGGTTAATCTCCATGAA+GGG | 0.611468 | 8.1:+38182402 | None:intergenic |
AGGAACACTTCCATTAGAAG+AGG | 0.622151 | 8.1:-38182187 | MS.gene61034:CDS |
AAATCCTAGATATTCATGAA+AGG | 0.629835 | 8.1:+38182629 | None:intergenic |
AGTCAATGCTTTGAGCCAAG+TGG | 0.638855 | 8.1:+38182506 | None:intergenic |
CCTTGCCATTAGTAGAAGGG+TGG | 0.639354 | 8.1:-38182662 | MS.gene61034:CDS |
TCATGTATTAGGATACTGGA+AGG | 0.646638 | 8.1:-38182115 | MS.gene61034:CDS |
TGTGTGCAGAAGATTCTTGG+AGG | 0.647451 | 8.1:+38182339 | None:intergenic |
AGAAGAAGAATCCAATGGTG+TGG | 0.649999 | 8.1:-38181980 | MS.gene61034:CDS |
TCCAAAGAAGAAGAATCCAA+TGG | 0.651475 | 8.1:-38181985 | MS.gene61034:CDS |
TGAGGGTTGGAAGTGAGCAA+AGG | 0.653409 | 8.1:+38182435 | None:intergenic |
GTGTGCAGAAGATTCTTGGA+GGG | 0.654330 | 8.1:+38182340 | None:intergenic |
ATTGAGTTCAGGAACAACAT+CGG | 0.662155 | 8.1:+38182371 | None:intergenic |
ACTGGAAGGAAAGCTTGGAA+AGG | 0.675899 | 8.1:-38182101 | MS.gene61034:CDS |
TGAAGGGAACGAGAACATGA+GGG | 0.682907 | 8.1:+38182418 | None:intergenic |
TGTGCAGAAGATTCTTGGAG+GGG | 0.685555 | 8.1:+38182341 | None:intergenic |
TACTTGAAAGAAGATGACTT+AGG | 0.685821 | 8.1:-38182711 | MS.gene61034:CDS |
GAAAGAGTCCAACTGTAAGG+TGG | 0.718352 | 8.1:-38182286 | MS.gene61034:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | GAATATTTGGATATTTGTTA+CGG | + | chr8.1:38182055-38182074 | None:intergenic | 20.0% |
! | AAATCCTAGATATTCATGAA+AGG | + | chr8.1:38181895-38181914 | None:intergenic | 25.0% |
! | AAGAGAAATTTGGTAAACAT+GGG | - | chr8.1:38182738-38182757 | MS.gene61034:CDS | 25.0% |
! | AGCTCTTTCAAAACAAAATT+AGG | + | chr8.1:38182491-38182510 | None:intergenic | 25.0% |
! | ATAGTTGTTGAAGAGAAATT+TGG | - | chr8.1:38182728-38182747 | MS.gene61034:CDS | 25.0% |
! | TAAGATGATATCTGTATCAA+TGG | + | chr8.1:38181973-38181992 | None:intergenic | 25.0% |
!!! | TCATCTTCTTTCAAGTATTT+TGG | + | chr8.1:38181807-38181826 | None:intergenic | 25.0% |
!!! | TTCATGAATATCTAGGATTT+TGG | - | chr8.1:38181895-38181914 | MS.gene61034:CDS | 25.0% |
AAATCTTCTCACAACTGAAA+TGG | - | chr8.1:38182691-38182710 | MS.gene61034:CDS | 30.0% | |
AACTTGGAGATCAATAAGAA+CGG | - | chr8.1:38182605-38182624 | MS.gene61034:CDS | 30.0% | |
GAAGAGAAATTTGGTAAACA+TGG | - | chr8.1:38182737-38182756 | MS.gene61034:CDS | 30.0% | |
GGATGGTTGTTATGAATATT+TGG | + | chr8.1:38182068-38182087 | None:intergenic | 30.0% | |
TAAAGGTTAATCTCCATGAA+GGG | + | chr8.1:38182122-38182141 | None:intergenic | 30.0% | |
TACTTGAAAGAAGATGACTT+AGG | - | chr8.1:38181810-38181829 | MS.gene61034:CDS | 30.0% | |
TTAGTTACAAATCCCAAATC+AGG | - | chr8.1:38181990-38182009 | MS.gene61034:CDS | 30.0% | |
TTCAAAAACATAACCTTCTC+TGG | + | chr8.1:38182446-38182465 | None:intergenic | 30.0% | |
! | TTTGAAAAGATAAAGCACCT+TGG | + | chr8.1:38181938-38181957 | None:intergenic | 30.0% |
!! | AAGACACTTTTGTTTCACTT+TGG | - | chr8.1:38182279-38182298 | MS.gene61034:CDS | 30.0% |
!! | AGTGAAACAAAAGTGTCTTT+AGG | + | chr8.1:38182278-38182297 | None:intergenic | 30.0% |
!! | GATTTTGGCAACAAAACATA+AGG | + | chr8.1:38182212-38182231 | None:intergenic | 30.0% |
!!! | AAAGAGCTTGCTAAGTTTTT+AGG | - | chr8.1:38182503-38182522 | MS.gene61034:CDS | 30.0% |
!!! | AAGAGCTTGCTAAGTTTTTA+GGG | - | chr8.1:38182504-38182523 | MS.gene61034:CDS | 30.0% |
AAACCTTGCCATTAGTAGAA+GGG | - | chr8.1:38181856-38181875 | MS.gene61034:CDS | 35.0% | |
ACCATTGGATTCTTCTTCTT+TGG | + | chr8.1:38182540-38182559 | None:intergenic | 35.0% | |
ACTTGGAGATCAATAAGAAC+GGG | - | chr8.1:38182606-38182625 | MS.gene61034:CDS | 35.0% | |
ATTGAGTTCAGGAACAACAT+CGG | + | chr8.1:38182153-38182172 | None:intergenic | 35.0% | |
CCTAATACATGATCCCAAAA+GGG | + | chr8.1:38182398-38182417 | None:intergenic | 35.0% | |
CCTAGATATTCATGAAAGGT+GGG | + | chr8.1:38181891-38181910 | None:intergenic | 35.0% | |
GTAAAGGTTAATCTCCATGA+AGG | + | chr8.1:38182123-38182142 | None:intergenic | 35.0% | |
TATATCATCAACCACACCAT+TGG | + | chr8.1:38182555-38182574 | None:intergenic | 35.0% | |
TCATGTATTAGGATACTGGA+AGG | - | chr8.1:38182406-38182425 | MS.gene61034:CDS | 35.0% | |
TCCAAAGAAGAAGAATCCAA+TGG | - | chr8.1:38182536-38182555 | MS.gene61034:CDS | 35.0% | |
TCCTAATACATGATCCCAAA+AGG | + | chr8.1:38182399-38182418 | None:intergenic | 35.0% | |
TCCTAGATATTCATGAAAGG+TGG | + | chr8.1:38181892-38181911 | None:intergenic | 35.0% | |
! | GATTCTTCTTCTTTGGAGAA+TGG | + | chr8.1:38182533-38182552 | None:intergenic | 35.0% |
! | TTGGACTCTTTCACAGATTT+TGG | + | chr8.1:38182227-38182246 | None:intergenic | 35.0% |
!! | AACAAGAACTTTTTCCGTCT+TGG | - | chr8.1:38182650-38182669 | MS.gene61034:CDS | 35.0% |
!! | CAACATCGGTTTCATAGTAA+AGG | + | chr8.1:38182139-38182158 | None:intergenic | 35.0% |
!!! | TCAAGTATTTTGGCACAACA+GGG | + | chr8.1:38181797-38181816 | None:intergenic | 35.0% |
!!! | TTCAAGTATTTTGGCACAAC+AGG | + | chr8.1:38181798-38181817 | None:intergenic | 35.0% |
AAGATACACCACCTTACAGT+TGG | + | chr8.1:38182246-38182265 | None:intergenic | 40.0% | |
AATCTCCAACTTTGCCAAGA+CGG | + | chr8.1:38182667-38182686 | None:intergenic | 40.0% | |
AGAAGAAGAATCCAATGGTG+TGG | - | chr8.1:38182541-38182560 | MS.gene61034:CDS | 40.0% | |
AGGAACACTTCCATTAGAAG+AGG | - | chr8.1:38182334-38182353 | MS.gene61034:CDS | 40.0% | |
CAAACCTTGCCATTAGTAGA+AGG | - | chr8.1:38181855-38181874 | MS.gene61034:CDS | 40.0% | |
CCCACCTTTCATGAATATCT+AGG | - | chr8.1:38181888-38181907 | MS.gene61034:CDS | 40.0% | |
GGGATCATGTATTAGGATAC+TGG | - | chr8.1:38182402-38182421 | MS.gene61034:CDS | 40.0% | |
TGACTTAGGTCAAGAATGCA+AGG | - | chr8.1:38181824-38181843 | MS.gene61034:CDS | 40.0% | |
TGTAGAGGAACGACTTCTTA+TGG | - | chr8.1:38182371-38182390 | MS.gene61034:CDS | 40.0% | |
TGTGAAAGAGTCCAACTGTA+AGG | - | chr8.1:38182232-38182251 | MS.gene61034:CDS | 40.0% | |
TTGTGTGTGCAGAAGATTCT+TGG | + | chr8.1:38182188-38182207 | None:intergenic | 40.0% | |
! | AAAGCACCTTGGAGAATCTT+GGG | + | chr8.1:38181927-38181946 | None:intergenic | 40.0% |
! | AAGCTAAGAGCACAAAGTAG+AGG | - | chr8.1:38182314-38182333 | MS.gene61034:CDS | 40.0% |
! | CTTTGAGAAGCTTAGCAACT+TGG | - | chr8.1:38182589-38182608 | MS.gene61034:CDS | 40.0% |
! | GACTTCTTATGGACCCTTTT+GGG | - | chr8.1:38182382-38182401 | MS.gene61034:CDS | 40.0% |
! | GCTGTTGAGAGTTTTTGTAG+AGG | - | chr8.1:38182356-38182375 | MS.gene61034:CDS | 40.0% |
! | TAAAGCACCTTGGAGAATCT+TGG | + | chr8.1:38181928-38181947 | None:intergenic | 40.0% |
! | TTTTTCCGTCTTGGCAAAGT+TGG | - | chr8.1:38182659-38182678 | MS.gene61034:CDS | 40.0% |
!!! | CCCTTTTGGGATCATGTATT+AGG | - | chr8.1:38182395-38182414 | MS.gene61034:CDS | 40.0% |
ACTGGAAGGAAAGCTTGGAA+AGG | - | chr8.1:38182420-38182439 | MS.gene61034:CDS | 45.0% | |
AGCCAAGTGGTACCTGATTT+GGG | + | chr8.1:38182005-38182024 | None:intergenic | 45.0% | |
AGGATACTGGAAGGAAAGCT+TGG | - | chr8.1:38182415-38182434 | MS.gene61034:CDS | 45.0% | |
ATCCCAAATCAGGTACCACT+TGG | - | chr8.1:38182000-38182019 | MS.gene61034:CDS | 45.0% | |
ATGAAGGGAACGAGAACATG+AGG | + | chr8.1:38182107-38182126 | None:intergenic | 45.0% | |
CTCTCAACAGCCTCTTCTAA+TGG | + | chr8.1:38182347-38182366 | None:intergenic | 45.0% | |
GAAAGAGTCCAACTGTAAGG+TGG | - | chr8.1:38182235-38182254 | MS.gene61034:CDS | 45.0% | |
GGGGATAGTGAATTGAGTTC+AGG | + | chr8.1:38182164-38182183 | None:intergenic | 45.0% | |
GTCTTGGCAAAGTTGGAGAT+TGG | - | chr8.1:38182666-38182685 | MS.gene61034:CDS | 45.0% | |
GTGTGCAGAAGATTCTTGGA+GGG | + | chr8.1:38182184-38182203 | None:intergenic | 45.0% | |
TCATGTTCTCGTTCCCTTCA+TGG | - | chr8.1:38182106-38182125 | MS.gene61034:CDS | 45.0% | |
TCGATCCACCCTTCTACTAA+TGG | + | chr8.1:38181867-38181886 | None:intergenic | 45.0% | |
TGAAGGGAACGAGAACATGA+GGG | + | chr8.1:38182106-38182125 | None:intergenic | 45.0% | |
TGTGCAGAAGATTCTTGGAG+GGG | + | chr8.1:38182183-38182202 | None:intergenic | 45.0% | |
TGTGTGCAGAAGATTCTTGG+AGG | + | chr8.1:38182185-38182204 | None:intergenic | 45.0% | |
TTTGCTCCCAAGATTCTCCA+AGG | - | chr8.1:38181918-38181937 | MS.gene61034:CDS | 45.0% | |
! | AGTCAATGCTTTGAGCCAAG+TGG | + | chr8.1:38182018-38182037 | None:intergenic | 45.0% |
! | CGACTTCTTATGGACCCTTT+TGG | - | chr8.1:38182381-38182400 | MS.gene61034:CDS | 45.0% |
AAGCTTGGAAAGGCCAGAGA+AGG | - | chr8.1:38182430-38182449 | MS.gene61034:CDS | 50.0% | |
CCACCCTTCTACTAATGGCA+AGG | + | chr8.1:38181862-38181881 | None:intergenic | 50.0% | |
CCTTGCCATTAGTAGAAGGG+TGG | - | chr8.1:38181859-38181878 | MS.gene61034:CDS | 50.0% | |
GAGCCAAGTGGTACCTGATT+TGG | + | chr8.1:38182006-38182025 | None:intergenic | 50.0% | |
GGTTGGAAGTGAGCAAAGGA+TGG | + | chr8.1:38182085-38182104 | None:intergenic | 50.0% | |
TGAGGGTTGGAAGTGAGCAA+AGG | + | chr8.1:38182089-38182108 | None:intergenic | 50.0% | |
GGGAACGAGAACATGAGGGT+TGG | + | chr8.1:38182102-38182121 | None:intergenic | 55.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 38181771 | 38182772 | 38181771 | ID=MS.gene61034 |
chr8.1 | mRNA | 38181771 | 38182772 | 38181771 | ID=MS.gene61034.t1;Parent=MS.gene61034 |
chr8.1 | exon | 38181771 | 38182772 | 38181771 | ID=MS.gene61034.t1.exon1;Parent=MS.gene61034.t1 |
chr8.1 | CDS | 38181771 | 38182772 | 38181771 | ID=cds.MS.gene61034.t1;Parent=MS.gene61034.t1 |
Gene Sequence |
Protein sequence |