Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61040.t1 | AET03213.1 | 85.6 | 333 | 32 | 2 | 1 | 332 | 1 | 318 | 4.70E-160 | 573.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61040.t1 | P52839 | 52.9 | 327 | 146 | 3 | 8 | 332 | 4 | 324 | 8.8e-99 | 361.7 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61040.t1 | G7LG99 | 85.6 | 333 | 32 | 2 | 1 | 332 | 1 | 318 | 3.4e-160 | 573.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene53169 | MS.gene61040 | PPI |
| MS.gene99693 | MS.gene61040 | PPI |
| MS.gene55382 | MS.gene61040 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61040.t1 | MTR_8g066210 | 85.586 | 333 | 32 | 2 | 1 | 332 | 1 | 318 | 0.0 | 573 |
| MS.gene61040.t1 | MTR_3g435130 | 78.743 | 334 | 69 | 1 | 1 | 332 | 1 | 334 | 0.0 | 553 |
| MS.gene61040.t1 | MTR_8g066220 | 76.577 | 333 | 77 | 1 | 1 | 332 | 1 | 333 | 0.0 | 541 |
| MS.gene61040.t1 | MTR_0071s0010 | 71.687 | 332 | 92 | 1 | 3 | 332 | 2 | 333 | 0.0 | 511 |
| MS.gene61040.t1 | MTR_3g046670 | 71.687 | 332 | 92 | 1 | 3 | 332 | 2 | 333 | 0.0 | 511 |
| MS.gene61040.t1 | MTR_3g013500 | 50.943 | 318 | 155 | 1 | 16 | 332 | 20 | 337 | 5.06e-121 | 352 |
| MS.gene61040.t1 | MTR_7g007710 | 48.598 | 321 | 161 | 2 | 16 | 332 | 12 | 332 | 1.58e-116 | 340 |
| MS.gene61040.t1 | MTR_7g007680 | 47.188 | 320 | 162 | 3 | 16 | 332 | 18 | 333 | 1.71e-111 | 329 |
| MS.gene61040.t1 | MTR_8g066280 | 80.319 | 188 | 37 | 0 | 145 | 332 | 22 | 209 | 1.31e-110 | 320 |
| MS.gene61040.t1 | MTR_8g040820 | 45.938 | 320 | 168 | 4 | 18 | 332 | 25 | 344 | 1.66e-109 | 323 |
| MS.gene61040.t1 | MTR_8g035720 | 44.681 | 329 | 176 | 3 | 10 | 332 | 78 | 406 | 1.84e-105 | 315 |
| MS.gene61040.t1 | MTR_8g040520 | 48.012 | 327 | 154 | 5 | 4 | 326 | 21 | 335 | 4.87e-105 | 311 |
| MS.gene61040.t1 | MTR_8g040430 | 45.536 | 336 | 167 | 5 | 3 | 332 | 20 | 345 | 1.98e-104 | 310 |
| MS.gene61040.t1 | MTR_8g040490 | 43.544 | 333 | 174 | 4 | 4 | 332 | 21 | 343 | 4.46e-103 | 308 |
| MS.gene61040.t1 | MTR_3g434790 | 71.875 | 192 | 54 | 0 | 141 | 332 | 43 | 234 | 4.29e-99 | 292 |
| MS.gene61040.t1 | MTR_3g434790 | 73.684 | 57 | 14 | 1 | 1 | 56 | 1 | 57 | 4.25e-20 | 87.8 |
| MS.gene61040.t1 | MTR_8g041790 | 45.714 | 315 | 149 | 5 | 23 | 332 | 28 | 325 | 1.83e-98 | 294 |
| MS.gene61040.t1 | MTR_8g040250 | 50.397 | 252 | 118 | 5 | 85 | 332 | 45 | 293 | 2.13e-88 | 267 |
| MS.gene61040.t1 | MTR_8g014380 | 42.071 | 309 | 140 | 4 | 4 | 310 | 10 | 281 | 4.09e-85 | 258 |
| MS.gene61040.t1 | MTR_8g040820 | 47.489 | 219 | 111 | 3 | 118 | 332 | 27 | 245 | 4.13e-77 | 236 |
| MS.gene61040.t1 | MTR_8g040430 | 48.402 | 219 | 109 | 2 | 118 | 332 | 27 | 245 | 1.28e-73 | 228 |
| MS.gene61040.t1 | MTR_8g040730 | 51.685 | 178 | 79 | 5 | 78 | 250 | 39 | 214 | 5.13e-49 | 172 |
| MS.gene61040.t1 | MTR_8g040730 | 50.641 | 156 | 73 | 3 | 22 | 175 | 343 | 496 | 2.53e-45 | 162 |
| MS.gene61040.t1 | MTR_8g040710 | 50.336 | 149 | 72 | 1 | 176 | 322 | 134 | 282 | 1.30e-47 | 162 |
| MS.gene61040.t1 | MTR_8g066190 | 70.642 | 109 | 14 | 1 | 224 | 332 | 2 | 92 | 2.75e-43 | 144 |
| MS.gene61040.t1 | MTR_8g040315 | 45.238 | 126 | 68 | 1 | 207 | 332 | 8 | 132 | 1.27e-30 | 113 |
| MS.gene61040.t1 | MTR_8g066200 | 77.778 | 36 | 8 | 0 | 150 | 185 | 25 | 60 | 7.89e-15 | 68.9 |
| MS.gene61040.t1 | MTR_8g040410 | 37.079 | 89 | 38 | 1 | 216 | 304 | 75 | 145 | 1.36e-14 | 70.5 |
| MS.gene61040.t1 | MTR_8g040410 | 48.333 | 60 | 28 | 1 | 66 | 122 | 21 | 80 | 1.31e-11 | 62.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61040.t1 | AT5G07010 | 49.231 | 325 | 161 | 2 | 11 | 332 | 33 | 356 | 7.14e-121 | 352 |
| MS.gene61040.t1 | AT2G03760 | 52.599 | 327 | 147 | 3 | 8 | 332 | 4 | 324 | 6.92e-118 | 343 |
| MS.gene61040.t1 | AT3G45070 | 52.500 | 320 | 149 | 3 | 15 | 332 | 10 | 328 | 5.68e-115 | 336 |
| MS.gene61040.t1 | AT3G45070 | 52.500 | 320 | 149 | 3 | 15 | 332 | 5 | 323 | 5.84e-115 | 336 |
| MS.gene61040.t1 | AT3G45070 | 52.500 | 320 | 149 | 3 | 15 | 332 | 37 | 355 | 6.79e-115 | 337 |
| MS.gene61040.t1 | AT2G03770 | 48.916 | 323 | 156 | 2 | 4 | 325 | 1 | 315 | 3.53e-113 | 331 |
| MS.gene61040.t1 | AT5G07000 | 47.826 | 322 | 162 | 3 | 16 | 332 | 24 | 344 | 6.10e-110 | 324 |
| MS.gene61040.t1 | AT3G45080 | 51.090 | 321 | 153 | 4 | 15 | 332 | 10 | 329 | 2.90e-108 | 319 |
| MS.gene61040.t1 | AT5G43690 | 48.673 | 339 | 159 | 6 | 1 | 332 | 1 | 331 | 3.17e-106 | 314 |
| MS.gene61040.t1 | AT1G13420 | 51.290 | 310 | 145 | 4 | 25 | 332 | 26 | 331 | 1.47e-104 | 310 |
| MS.gene61040.t1 | AT2G03750 | 48.338 | 331 | 168 | 3 | 3 | 332 | 22 | 350 | 2.47e-104 | 310 |
| MS.gene61040.t1 | AT4G26280 | 48.408 | 314 | 141 | 2 | 15 | 325 | 7 | 302 | 8.58e-99 | 294 |
| MS.gene61040.t1 | AT1G28170 | 50.154 | 325 | 155 | 6 | 11 | 332 | 6 | 326 | 1.07e-98 | 295 |
| MS.gene61040.t1 | AT1G18590 | 44.409 | 313 | 162 | 5 | 25 | 330 | 34 | 341 | 1.97e-94 | 284 |
| MS.gene61040.t1 | AT2G14920 | 46.497 | 314 | 160 | 4 | 25 | 332 | 22 | 333 | 9.33e-94 | 282 |
| MS.gene61040.t1 | AT1G74100 | 43.038 | 316 | 162 | 6 | 25 | 330 | 26 | 333 | 5.34e-92 | 278 |
| MS.gene61040.t1 | AT1G74090 | 46.497 | 314 | 154 | 8 | 25 | 330 | 38 | 345 | 1.13e-86 | 265 |
| MS.gene61040.t1 | AT1G13430 | 45.122 | 328 | 158 | 5 | 25 | 332 | 26 | 351 | 1.11e-84 | 259 |
| MS.gene61040.t1 | AT2G27570 | 41.693 | 319 | 130 | 4 | 15 | 332 | 10 | 273 | 1.94e-80 | 246 |
Find 70 sgRNAs with CRISPR-Local
Find 88 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCATCAATATCAAGGATTT+TGG | 0.103784 | 8.1:+38276410 | MS.gene61040:CDS |
| TCATGCTCTTGTTCCCTTCT+TGG | 0.120006 | 8.1:+38276618 | MS.gene61040:CDS |
| AAAGGATGGTTCTGAATATT+TGG | 0.223698 | 8.1:-38276580 | None:intergenic |
| AAGCCAAGTGGTACCTGATT+TGG | 0.229554 | 8.1:-38276518 | None:intergenic |
| ATATCAACTCCTTGCATTCT+TGG | 0.265457 | 8.1:-38276348 | None:intergenic |
| TGTAGAGGAGTGAGTTCTTA+TGG | 0.275090 | 8.1:+38276883 | MS.gene61040:CDS |
| TCATCATCCTGCAAGTATTT+AGG | 0.284119 | 8.1:-38276319 | None:intergenic |
| GCCCTTGGATTCTTCTTCAT+TGG | 0.290617 | 8.1:-38277049 | None:intergenic |
| TGAGTTCTTATGGACCCTTT+TGG | 0.306745 | 8.1:+38276893 | MS.gene61040:CDS |
| GGGAGCATGTATTAGGATAT+TGG | 0.331818 | 8.1:+38276914 | MS.gene61040:CDS |
| AGCCAAGTGGTACCTGATTT+GGG | 0.335808 | 8.1:-38276517 | None:intergenic |
| CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8.1:-38276856 | None:intergenic |
| CTAAGATGATATCTGAATCT+AGG | 0.344853 | 8.1:-38276486 | None:intergenic |
| TTTATAAACATCACCTTCTC+TGG | 0.349912 | 8.1:-38276955 | None:intergenic |
| AGTGAAACAAACATGTCTTT+AGG | 0.355827 | 8.1:-38276787 | None:intergenic |
| CATAATCTTTGTCACTATAA+AGG | 0.357838 | 8.1:-38276648 | None:intergenic |
| TCTTGTACCTAAATACTTGC+AGG | 0.394811 | 8.1:+38276312 | MS.gene61040:CDS |
| GATTCTTCTTCATTGGAGAA+TGG | 0.413955 | 8.1:-38277042 | None:intergenic |
| TTAGTTACCGCTCCCAAATC+AGG | 0.417298 | 8.1:+38276505 | MS.gene61040:CDS |
| AACACCTGTTGCTACTCTTC+CGG | 0.418445 | 8.1:-38277136 | None:intergenic |
| GCTGTGGCCAAGTCGGAGAT+TGG | 0.420103 | 8.1:+38277178 | MS.gene61040:CDS |
| TCCTAATACATGCTCCCAAA+AGG | 0.430142 | 8.1:-38276908 | None:intergenic |
| AGGATATTGGAAGGAAAGCT+TGG | 0.445940 | 8.1:+38276927 | MS.gene61040:CDS |
| AAGACATGTTTGTTTCACTT+TGG | 0.453802 | 8.1:+38276791 | MS.gene61040:CDS |
| TAAGATGATATCTGAATCTA+GGG | 0.463673 | 8.1:-38276485 | None:intergenic |
| CACTATCACCGAAAATAAAG+TGG | 0.478259 | 8.1:+38277239 | MS.gene61040:CDS |
| TATATCATCAACCATGCCCT+TGG | 0.479593 | 8.1:-38277064 | None:intergenic |
| TCCCACACTCATCAATATCA+AGG | 0.480214 | 8.1:+38276403 | MS.gene61040:CDS |
| CGATCATTTCAGTTGTGAGA+AGG | 0.489768 | 8.1:-38277206 | None:intergenic |
| GTTGATATCCACCTTGCCAT+TGG | 0.490567 | 8.1:+38276363 | MS.gene61040:CDS |
| TGAGAACTTGAGCAACTTGG+AGG | 0.492399 | 8.1:+38277104 | MS.gene61040:CDS |
| GAAAATAAAGTGGGTAAACA+TGG | 0.493210 | 8.1:+38277249 | MS.gene61040:CDS |
| AACTTGGAGGTCAACAAGAC+CGG | 0.513880 | 8.1:+38277117 | MS.gene61040:CDS |
| GAATATTTGGATACTTGTTG+CGG | 0.514493 | 8.1:-38276567 | None:intergenic |
| CCTAATACATGCTCCCAAAA+GGG | 0.526000 | 8.1:-38276907 | None:intergenic |
| ATAAAGGTCAATCTCCAAGA+AGG | 0.527045 | 8.1:-38276632 | None:intergenic |
| TTCATCACTTAATTCTGCCA+TGG | 0.537127 | 8.1:-38276284 | None:intergenic |
| GGAGATAAAGAGTTAAGGTC+AGG | 0.537758 | 8.1:-38276673 | None:intergenic |
| CTCCCAAATCAGGTACCACT+TGG | 0.546400 | 8.1:+38276515 | MS.gene61040:CDS |
| GGGAACAAGAGCATGAGGGT+TGG | 0.547139 | 8.1:-38276611 | None:intergenic |
| ATGAGTGTGGGATAAAATCC+AGG | 0.549497 | 8.1:-38276392 | None:intergenic |
| AAGACCGGAAGAGTAGCAAC+AGG | 0.551206 | 8.1:+38277132 | MS.gene61040:CDS |
| AAAGCCTCTTCTAATGGAAG+TGG | 0.551607 | 8.1:-38276850 | None:intergenic |
| CTCCAATGAAGAAGAATCCA+AGG | 0.560806 | 8.1:+38277047 | MS.gene61040:CDS |
| AAAAGAGACAAACTGTAAAG+TGG | 0.561357 | 8.1:+38276747 | MS.gene61040:CDS |
| TTGGTGGAGATAAAGAGTTA+AGG | 0.578369 | 8.1:-38276678 | None:intergenic |
| TCCTTGATATTGATGAGTGT+GGG | 0.585586 | 8.1:-38276404 | None:intergenic |
| TAAAGGTCAATCTCCAAGAA+GGG | 0.586164 | 8.1:-38276631 | None:intergenic |
| TGTGTGGAGAAGAGTCTTGG+TGG | 0.590665 | 8.1:-38276694 | None:intergenic |
| AAGCTTGGAAAGGCCAGAGA+AGG | 0.595580 | 8.1:+38276942 | MS.gene61040:CDS |
| TGACTTAAGCCAAGAATGCA+AGG | 0.597377 | 8.1:+38276339 | MS.gene61040:CDS |
| AGGACCACTTCCATTAGAAG+AGG | 0.602220 | 8.1:+38276846 | MS.gene61040:CDS |
| TGAAGAAGAATCCAAGGGCA+TGG | 0.602522 | 8.1:+38277053 | MS.gene61040:CDS |
| AAGAAGGGAACAAGAGCATG+AGG | 0.605363 | 8.1:-38276616 | None:intergenic |
| ACTTTGGCATTTCTCAAACA+AGG | 0.607779 | 8.1:+38276807 | MS.gene61040:CDS |
| ATCCTTGATATTGATGAGTG+TGG | 0.613449 | 8.1:-38276405 | None:intergenic |
| AGTCAATGCTTTAAGCCAAG+TGG | 0.615961 | 8.1:-38276530 | None:intergenic |
| AAGGTAAGAGCACAAAGTAG+AGG | 0.616375 | 8.1:+38276826 | MS.gene61040:CDS |
| GGTTGGAAGTGAGCAAAGGA+TGG | 0.616548 | 8.1:-38276594 | None:intergenic |
| AAAATAAAGTGGGTAAACAT+GGG | 0.621517 | 8.1:+38277250 | MS.gene61040:CDS |
| CAAAACATATGGAATATGTG+TGG | 0.621592 | 8.1:-38276710 | None:intergenic |
| ATATGTGTGGAGAAGAGTCT+TGG | 0.624077 | 8.1:-38276697 | None:intergenic |
| GCATGTATTAGGATATTGGA+AGG | 0.624163 | 8.1:+38276918 | MS.gene61040:CDS |
| TCTGACAAGATAAAACACCT+TGG | 0.628186 | 8.1:-38276450 | None:intergenic |
| AGTGGTACCTGATTTGGGAG+CGG | 0.637866 | 8.1:-38276512 | None:intergenic |
| TCCAATGAAGAAGAATCCAA+GGG | 0.650057 | 8.1:+38277048 | MS.gene61040:CDS |
| ACTATCACCGAAAATAAAGT+GGG | 0.651764 | 8.1:+38277240 | MS.gene61040:CDS |
| TGAGGGTTGGAAGTGAGCAA+AGG | 0.653409 | 8.1:-38276598 | None:intergenic |
| ATTGGAAGGAAAGCTTGGAA+AGG | 0.672349 | 8.1:+38276932 | MS.gene61040:CDS |
| AGAAGGGAACAAGAGCATGA+GGG | 0.677902 | 8.1:-38276615 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTTTCAAATAAAAACT+AGG | - | chr8.1:38277003-38277022 | None:intergenic | 10.0% |
| !!! | AAAAAAATTGCTGAGTTTTT+GGG | + | chr8.1:38277015-38277034 | MS.gene61040:CDS | 20.0% |
| ! | AAAATAAAGTGGGTAAACAT+GGG | + | chr8.1:38277250-38277269 | MS.gene61040:CDS | 25.0% |
| ! | CATAATCTTTGTCACTATAA+AGG | - | chr8.1:38276651-38276670 | None:intergenic | 25.0% |
| ! | TAAGATGATATCTGAATCTA+GGG | - | chr8.1:38276488-38276507 | None:intergenic | 25.0% |
| !! | GAAAAAAATTGCTGAGTTTT+TGG | + | chr8.1:38277014-38277033 | MS.gene61040:CDS | 25.0% |
| !! | TTTGTCTCTTTTACAGATTT+TGG | - | chr8.1:38276739-38276758 | None:intergenic | 25.0% |
| !!! | ATGTTTACCCACTTTATTTT+CGG | - | chr8.1:38277250-38277269 | None:intergenic | 25.0% |
| AAAAGAGACAAACTGTAAAG+TGG | + | chr8.1:38276747-38276766 | MS.gene61040:CDS | 30.0% | |
| AAGACATGTTTGTTTCACTT+TGG | + | chr8.1:38276791-38276810 | MS.gene61040:CDS | 30.0% | |
| ACTATCACCGAAAATAAAGT+GGG | + | chr8.1:38277240-38277259 | MS.gene61040:CDS | 30.0% | |
| AGTGAAACAAACATGTCTTT+AGG | - | chr8.1:38276790-38276809 | None:intergenic | 30.0% | |
| CAAAACATATGGAATATGTG+TGG | - | chr8.1:38276713-38276732 | None:intergenic | 30.0% | |
| CTAAGATGATATCTGAATCT+AGG | - | chr8.1:38276489-38276508 | None:intergenic | 30.0% | |
| GAAAATAAAGTGGGTAAACA+TGG | + | chr8.1:38277249-38277268 | MS.gene61040:CDS | 30.0% | |
| TTTATAAACATCACCTTCTC+TGG | - | chr8.1:38276958-38276977 | None:intergenic | 30.0% | |
| ! | CTCATCAATATCAAGGATTT+TGG | + | chr8.1:38276410-38276429 | MS.gene61040:CDS | 30.0% |
| ! | GAATATTTGGATACTTGTTG+CGG | - | chr8.1:38276570-38276589 | None:intergenic | 30.0% |
| !! | AAAGGATGGTTCTGAATATT+TGG | - | chr8.1:38276583-38276602 | None:intergenic | 30.0% |
| !! | GATTTTGGCAACAAAACATA+TGG | - | chr8.1:38276724-38276743 | None:intergenic | 30.0% |
| !!! | AATAAAGCTTTTTTTCGCTG+TGG | + | chr8.1:38277162-38277181 | MS.gene61040:CDS | 30.0% |
| ACTTTGGCATTTCTCAAACA+AGG | + | chr8.1:38276807-38276826 | MS.gene61040:CDS | 35.0% | |
| ATAAAGGTCAATCTCCAAGA+AGG | - | chr8.1:38276635-38276654 | None:intergenic | 35.0% | |
| ATATCAACTCCTTGCATTCT+TGG | - | chr8.1:38276351-38276370 | None:intergenic | 35.0% | |
| ATCCTTGATATTGATGAGTG+TGG | - | chr8.1:38276408-38276427 | None:intergenic | 35.0% | |
| ATTGCCACAAAAATTCTCCA+AGG | + | chr8.1:38276433-38276452 | MS.gene61040:CDS | 35.0% | |
| CACTATCACCGAAAATAAAG+TGG | + | chr8.1:38277239-38277258 | MS.gene61040:CDS | 35.0% | |
| GATTCTTCTTCATTGGAGAA+TGG | - | chr8.1:38277045-38277064 | None:intergenic | 35.0% | |
| GCATGTATTAGGATATTGGA+AGG | + | chr8.1:38276918-38276937 | MS.gene61040:CDS | 35.0% | |
| TAAAGGTCAATCTCCAAGAA+GGG | - | chr8.1:38276634-38276653 | None:intergenic | 35.0% | |
| TCATCATCCTGCAAGTATTT+AGG | - | chr8.1:38276322-38276341 | None:intergenic | 35.0% | |
| TCCAATGAAGAAGAATCCAA+GGG | + | chr8.1:38277048-38277067 | MS.gene61040:CDS | 35.0% | |
| TCCTTGATATTGATGAGTGT+GGG | - | chr8.1:38276407-38276426 | None:intergenic | 35.0% | |
| TCTGACAAGATAAAACACCT+TGG | - | chr8.1:38276453-38276472 | None:intergenic | 35.0% | |
| TCTTGTACCTAAATACTTGC+AGG | + | chr8.1:38276312-38276331 | MS.gene61040:CDS | 35.0% | |
| TTGGTGGAGATAAAGAGTTA+AGG | - | chr8.1:38276681-38276700 | None:intergenic | 35.0% | |
| ! | AACACCTTGGAGAATTTTTG+TGG | - | chr8.1:38276440-38276459 | None:intergenic | 35.0% |
| !! | AAAATCCAGGCTTTTTCCAA+TGG | - | chr8.1:38276382-38276401 | None:intergenic | 35.0% |
| !! | GCTTTTGAGAGTTTTTGTAG+AGG | + | chr8.1:38276868-38276887 | MS.gene61040:CDS | 35.0% |
| !! | TTTTGAGAACTTGAGCAACT+TGG | + | chr8.1:38277101-38277120 | MS.gene61040:CDS | 35.0% |
| AAAGCCTCTTCTAATGGAAG+TGG | - | chr8.1:38276853-38276872 | None:intergenic | 40.0% | |
| AGGATATTGGAAGGAAAGCT+TGG | + | chr8.1:38276927-38276946 | MS.gene61040:CDS | 40.0% | |
| ATATGTGTGGAGAAGAGTCT+TGG | - | chr8.1:38276700-38276719 | None:intergenic | 40.0% | |
| ATGAGTGTGGGATAAAATCC+AGG | - | chr8.1:38276395-38276414 | None:intergenic | 40.0% | |
| ATTGGAAGGAAAGCTTGGAA+AGG | + | chr8.1:38276932-38276951 | MS.gene61040:CDS | 40.0% | |
| CCTAATACATGCTCCCAAAA+GGG | - | chr8.1:38276910-38276929 | None:intergenic | 40.0% | |
| CGATCATTTCAGTTGTGAGA+AGG | - | chr8.1:38277209-38277228 | None:intergenic | 40.0% | |
| CTCCAATGAAGAAGAATCCA+AGG | + | chr8.1:38277047-38277066 | MS.gene61040:CDS | 40.0% | |
| CTCTCAAAAGCCTCTTCTAA+TGG | - | chr8.1:38276859-38276878 | None:intergenic | 40.0% | |
| GGAGATAAAGAGTTAAGGTC+AGG | - | chr8.1:38276676-38276695 | None:intergenic | 40.0% | |
| TATATCATCAACCATGCCCT+TGG | - | chr8.1:38277067-38277086 | None:intergenic | 40.0% | |
| TCCCACACTCATCAATATCA+AGG | + | chr8.1:38276403-38276422 | MS.gene61040:CDS | 40.0% | |
| TCCTAATACATGCTCCCAAA+AGG | - | chr8.1:38276911-38276930 | None:intergenic | 40.0% | |
| TGACTTAAGCCAAGAATGCA+AGG | + | chr8.1:38276339-38276358 | MS.gene61040:CDS | 40.0% | |
| TGTAGAGGAGTGAGTTCTTA+TGG | + | chr8.1:38276883-38276902 | MS.gene61040:CDS | 40.0% | |
| ! | AAGGTAAGAGCACAAAGTAG+AGG | + | chr8.1:38276826-38276845 | MS.gene61040:CDS | 40.0% |
| ! | AGTCAATGCTTTAAGCCAAG+TGG | - | chr8.1:38276533-38276552 | None:intergenic | 40.0% |
| ! | GAGTTCTTATGGACCCTTTT+GGG | + | chr8.1:38276894-38276913 | MS.gene61040:CDS | 40.0% |
| ! | GGGAGCATGTATTAGGATAT+TGG | + | chr8.1:38276914-38276933 | MS.gene61040:CDS | 40.0% |
| ! | TGAGTTCTTATGGACCCTTT+TGG | + | chr8.1:38276893-38276912 | MS.gene61040:CDS | 40.0% |
| AACACCTGTTGCTACTCTTC+CGG | - | chr8.1:38277139-38277158 | None:intergenic | 45.0% | |
| AACTTGGAGGTCAACAAGAC+CGG | + | chr8.1:38277117-38277136 | MS.gene61040:CDS | 45.0% | |
| AAGCCAAGTGGTACCTGATT+TGG | - | chr8.1:38276521-38276540 | None:intergenic | 45.0% | |
| AGCCAAGTGGTACCTGATTT+GGG | - | chr8.1:38276520-38276539 | None:intergenic | 45.0% | |
| AGGACCACTTCCATTAGAAG+AGG | + | chr8.1:38276846-38276865 | MS.gene61040:CDS | 45.0% | |
| GCCCTTGGATTCTTCTTCAT+TGG | - | chr8.1:38277052-38277071 | None:intergenic | 45.0% | |
| GTTGATATCCACCTTGCCAT+TGG | + | chr8.1:38276363-38276382 | MS.gene61040:CDS | 45.0% | |
| TCATGCTCTTGTTCCCTTCT+TGG | + | chr8.1:38276618-38276637 | MS.gene61040:CDS | 45.0% | |
| TGAAGAAGAATCCAAGGGCA+TGG | + | chr8.1:38277053-38277072 | MS.gene61040:CDS | 45.0% | |
| TGAGAACTTGAGCAACTTGG+AGG | + | chr8.1:38277104-38277123 | MS.gene61040:CDS | 45.0% | |
| TTAGTTACCGCTCCCAAATC+AGG | + | chr8.1:38276505-38276524 | MS.gene61040:CDS | 45.0% | |
| ! | AAGAAGGGAACAAGAGCATG+AGG | - | chr8.1:38276619-38276638 | None:intergenic | 45.0% |
| ! | AGAAGGGAACAAGAGCATGA+GGG | - | chr8.1:38276618-38276637 | None:intergenic | 45.0% |
| ! | GGTTTTTCCAATCTCCGACT+TGG | - | chr8.1:38277188-38277207 | None:intergenic | 45.0% |
| !! | CCCTTTTGGGAGCATGTATT+AGG | + | chr8.1:38276907-38276926 | MS.gene61040:CDS | 45.0% |
| !!! | TTTTTTCGCTGTGGCCAAGT+CGG | + | chr8.1:38277171-38277190 | MS.gene61040:CDS | 45.0% |
| AAGACCGGAAGAGTAGCAAC+AGG | + | chr8.1:38277132-38277151 | MS.gene61040:CDS | 50.0% | |
| AAGCTTGGAAAGGCCAGAGA+AGG | + | chr8.1:38276942-38276961 | MS.gene61040:CDS | 50.0% | |
| CCTTGCCATTGGAAAAAGCC+TGG | + | chr8.1:38276374-38276393 | MS.gene61040:CDS | 50.0% | |
| CTCCCAAATCAGGTACCACT+TGG | + | chr8.1:38276515-38276534 | MS.gene61040:CDS | 50.0% | |
| GGTTGGAAGTGAGCAAAGGA+TGG | - | chr8.1:38276597-38276616 | None:intergenic | 50.0% | |
| TGAGGGTTGGAAGTGAGCAA+AGG | - | chr8.1:38276601-38276620 | None:intergenic | 50.0% | |
| TGTGTGGAGAAGAGTCTTGG+TGG | - | chr8.1:38276697-38276716 | None:intergenic | 50.0% | |
| !! | AGTGGTACCTGATTTGGGAG+CGG | - | chr8.1:38276515-38276534 | None:intergenic | 50.0% |
| !! | CCAGGCTTTTTCCAATGGCA+AGG | - | chr8.1:38276377-38276396 | None:intergenic | 50.0% |
| !! | GGCTTTTTCCAATGGCAAGG+TGG | - | chr8.1:38276374-38276393 | None:intergenic | 50.0% |
| ! | GGGAACAAGAGCATGAGGGT+TGG | - | chr8.1:38276614-38276633 | None:intergenic | 55.0% |
| GCTGTGGCCAAGTCGGAGAT+TGG | + | chr8.1:38277178-38277197 | MS.gene61040:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.1 | gene | 38276286 | 38277284 | 38276286 | ID=MS.gene61040 |
| chr8.1 | mRNA | 38276286 | 38277284 | 38276286 | ID=MS.gene61040.t1;Parent=MS.gene61040 |
| chr8.1 | exon | 38276286 | 38277284 | 38276286 | ID=MS.gene61040.t1.exon1;Parent=MS.gene61040.t1 |
| chr8.1 | CDS | 38276286 | 38277284 | 38276286 | ID=cds.MS.gene61040.t1;Parent=MS.gene61040.t1 |
| Gene Sequence |
| Protein sequence |
