Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61041.t1 | AET03213.1 | 86.8 | 333 | 29 | 1 | 1 | 333 | 1 | 318 | 2.40E-164 | 588.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61041.t1 | P52839 | 52.0 | 327 | 150 | 3 | 8 | 333 | 4 | 324 | 5.4e-96 | 352.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61041.t1 | G7LG99 | 86.8 | 333 | 29 | 1 | 1 | 333 | 1 | 318 | 1.7e-164 | 588.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|
PPI:
Gene1 | Gene2 | Type |
---|---|---|
MS.gene53169 | MS.gene61041 | PPI |
MS.gene99693 | MS.gene61041 | PPI |
MS.gene55382 | MS.gene61041 | PPI |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61041.t1 | MTR_8g066210 | 86.787 | 333 | 29 | 1 | 1 | 333 | 1 | 318 | 0.0 | 587 |
MS.gene61041.t1 | MTR_3g435130 | 77.844 | 334 | 73 | 1 | 1 | 333 | 1 | 334 | 0.0 | 544 |
MS.gene61041.t1 | MTR_8g066220 | 75.075 | 333 | 83 | 0 | 1 | 333 | 1 | 333 | 0.0 | 531 |
MS.gene61041.t1 | MTR_0071s0010 | 70.270 | 333 | 98 | 1 | 2 | 333 | 1 | 333 | 1.69e-180 | 502 |
MS.gene61041.t1 | MTR_3g046670 | 70.270 | 333 | 98 | 1 | 2 | 333 | 1 | 333 | 1.69e-180 | 502 |
MS.gene61041.t1 | MTR_3g013500 | 50.314 | 318 | 158 | 0 | 16 | 333 | 20 | 337 | 5.53e-119 | 347 |
MS.gene61041.t1 | MTR_7g007710 | 47.826 | 322 | 163 | 3 | 16 | 333 | 12 | 332 | 7.15e-113 | 331 |
MS.gene61041.t1 | MTR_8g066280 | 80.851 | 188 | 36 | 0 | 146 | 333 | 22 | 209 | 2.07e-110 | 320 |
MS.gene61041.t1 | MTR_7g007680 | 46.106 | 321 | 165 | 4 | 16 | 333 | 18 | 333 | 2.21e-107 | 318 |
MS.gene61041.t1 | MTR_8g040820 | 45.000 | 320 | 172 | 3 | 18 | 333 | 25 | 344 | 2.57e-107 | 317 |
MS.gene61041.t1 | MTR_8g035720 | 44.073 | 329 | 179 | 3 | 10 | 333 | 78 | 406 | 4.44e-102 | 306 |
MS.gene61041.t1 | MTR_8g040430 | 44.785 | 326 | 175 | 3 | 13 | 333 | 20 | 345 | 6.28e-102 | 303 |
MS.gene61041.t1 | MTR_8g040520 | 47.152 | 316 | 160 | 4 | 16 | 327 | 23 | 335 | 5.12e-101 | 301 |
MS.gene61041.t1 | MTR_3g434790 | 76.087 | 184 | 44 | 0 | 150 | 333 | 51 | 234 | 1.20e-100 | 296 |
MS.gene61041.t1 | MTR_3g434790 | 66.667 | 57 | 18 | 1 | 1 | 56 | 1 | 57 | 5.00e-17 | 79.3 |
MS.gene61041.t1 | MTR_8g040490 | 42.991 | 321 | 180 | 2 | 16 | 333 | 23 | 343 | 1.19e-99 | 299 |
MS.gene61041.t1 | MTR_8g041790 | 45.253 | 316 | 150 | 6 | 23 | 333 | 28 | 325 | 1.85e-95 | 286 |
MS.gene61041.t1 | MTR_8g040250 | 49.802 | 253 | 119 | 5 | 85 | 333 | 45 | 293 | 1.37e-86 | 263 |
MS.gene61041.t1 | MTR_8g014380 | 42.282 | 298 | 132 | 5 | 16 | 311 | 22 | 281 | 6.31e-81 | 248 |
MS.gene61041.t1 | MTR_8g040820 | 47.032 | 219 | 112 | 3 | 119 | 333 | 27 | 245 | 8.24e-75 | 231 |
MS.gene61041.t1 | MTR_8g040430 | 47.945 | 219 | 110 | 2 | 119 | 333 | 27 | 245 | 2.09e-71 | 222 |
MS.gene61041.t1 | MTR_8g040730 | 50.279 | 179 | 81 | 5 | 78 | 251 | 39 | 214 | 4.05e-46 | 164 |
MS.gene61041.t1 | MTR_8g040730 | 47.771 | 157 | 77 | 3 | 22 | 176 | 343 | 496 | 3.45e-41 | 150 |
MS.gene61041.t1 | MTR_8g040710 | 48.993 | 149 | 74 | 1 | 177 | 323 | 134 | 282 | 2.76e-45 | 156 |
MS.gene61041.t1 | MTR_8g066190 | 70.642 | 109 | 14 | 1 | 225 | 333 | 2 | 92 | 3.26e-44 | 147 |
MS.gene61041.t1 | MTR_8g040315 | 44.444 | 126 | 69 | 1 | 208 | 333 | 8 | 132 | 2.81e-29 | 109 |
MS.gene61041.t1 | MTR_8g066200 | 83.333 | 36 | 6 | 0 | 151 | 186 | 25 | 60 | 8.51e-16 | 71.6 |
MS.gene61041.t1 | MTR_8g040410 | 35.955 | 89 | 39 | 1 | 217 | 305 | 75 | 145 | 4.41e-13 | 66.2 |
MS.gene61041.t1 | MTR_8g040410 | 45.000 | 60 | 31 | 1 | 66 | 123 | 21 | 80 | 9.29e-11 | 59.7 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61041.t1 | AT5G07010 | 48.923 | 325 | 163 | 2 | 11 | 333 | 33 | 356 | 3.26e-119 | 348 |
MS.gene61041.t1 | AT3G45070 | 52.500 | 320 | 150 | 2 | 15 | 333 | 10 | 328 | 3.03e-116 | 339 |
MS.gene61041.t1 | AT3G45070 | 52.500 | 320 | 150 | 2 | 15 | 333 | 5 | 323 | 3.55e-116 | 339 |
MS.gene61041.t1 | AT3G45070 | 52.500 | 320 | 150 | 2 | 15 | 333 | 37 | 355 | 5.15e-116 | 340 |
MS.gene61041.t1 | AT2G03760 | 51.070 | 327 | 153 | 3 | 8 | 333 | 4 | 324 | 2.99e-115 | 337 |
MS.gene61041.t1 | AT2G03770 | 49.057 | 318 | 154 | 1 | 9 | 326 | 6 | 315 | 1.35e-110 | 325 |
MS.gene61041.t1 | AT5G07000 | 47.826 | 322 | 163 | 3 | 16 | 333 | 24 | 344 | 1.56e-109 | 323 |
MS.gene61041.t1 | AT3G45080 | 50.462 | 325 | 158 | 3 | 11 | 333 | 6 | 329 | 2.22e-109 | 322 |
MS.gene61041.t1 | AT2G03750 | 46.988 | 332 | 174 | 2 | 2 | 333 | 21 | 350 | 1.35e-104 | 310 |
MS.gene61041.t1 | AT1G13420 | 51.125 | 311 | 145 | 4 | 25 | 333 | 26 | 331 | 3.67e-104 | 308 |
MS.gene61041.t1 | AT5G43690 | 48.457 | 324 | 157 | 5 | 16 | 333 | 12 | 331 | 5.55e-102 | 303 |
MS.gene61041.t1 | AT1G28170 | 49.846 | 325 | 157 | 5 | 11 | 333 | 6 | 326 | 1.18e-98 | 294 |
MS.gene61041.t1 | AT4G26280 | 48.408 | 314 | 142 | 2 | 15 | 326 | 7 | 302 | 5.01e-98 | 292 |
MS.gene61041.t1 | AT2G14920 | 46.349 | 315 | 162 | 3 | 24 | 333 | 21 | 333 | 2.56e-96 | 289 |
MS.gene61041.t1 | AT1G18590 | 43.810 | 315 | 162 | 6 | 25 | 331 | 34 | 341 | 2.76e-90 | 274 |
MS.gene61041.t1 | AT1G74100 | 40.413 | 339 | 183 | 6 | 3 | 331 | 4 | 333 | 4.79e-90 | 273 |
MS.gene61041.t1 | AT1G13430 | 45.427 | 328 | 158 | 4 | 25 | 333 | 26 | 351 | 3.22e-87 | 266 |
MS.gene61041.t1 | AT1G74090 | 45.714 | 315 | 156 | 8 | 25 | 331 | 38 | 345 | 3.58e-84 | 258 |
MS.gene61041.t1 | AT2G27570 | 40.979 | 327 | 138 | 3 | 7 | 333 | 2 | 273 | 1.32e-80 | 246 |
Find 70 sgRNAs with CRISPR-Local
Find 86 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CCCATCAATATCAAGGATTT+TGG | 0.103784 | 8.1:+38283221 | MS.gene61041:CDS |
GTTGATTCTTTCACAGATTT+TGG | 0.131075 | 8.1:-38283550 | None:intergenic |
TCATGATCTTGTTCCCTTCT+TGG | 0.165973 | 8.1:+38283432 | MS.gene61041:CDS |
GGATGGGAGTTATAAATATT+TGG | 0.225003 | 8.1:-38283391 | None:intergenic |
GTCATCATCCTGCAAGTATT+TGG | 0.239761 | 8.1:-38283131 | None:intergenic |
AAATCAACTCCTTGCATTCT+TGG | 0.245138 | 8.1:-38283159 | None:intergenic |
TGAGTTCTTATGGACCATTT+TGG | 0.270531 | 8.1:+38283707 | MS.gene61041:CDS |
TGTAGAGGAGTGAGTTCTTA+TGG | 0.275090 | 8.1:+38283697 | MS.gene61041:CDS |
GATCCAAGTGGTACCTGATT+TGG | 0.290136 | 8.1:-38283329 | None:intergenic |
GGGAGCATGTGTTAGGATAT+TGG | 0.313999 | 8.1:+38283728 | MS.gene61041:CDS |
ATCCAAGTGGTACCTGATTT+GGG | 0.332840 | 8.1:-38283328 | None:intergenic |
CTCTCAAAAGCCTCTTCTAA+TGG | 0.341934 | 8.1:-38283670 | None:intergenic |
TTTATAAACATCACCTTCTC+TGG | 0.349912 | 8.1:-38283769 | None:intergenic |
AGTGAAACAAACATGTCTTT+AGG | 0.355827 | 8.1:-38283601 | None:intergenic |
CATAATCTTTGTCACTATAA+AGG | 0.357838 | 8.1:-38283462 | None:intergenic |
TCCAAAATCCTTGATATTGA+TGG | 0.366808 | 8.1:-38283222 | None:intergenic |
TCTTGTAGCCAAATACTTGC+AGG | 0.382051 | 8.1:+38283123 | MS.gene61041:CDS |
GCCATGGCCAAGTCGGAGAT+TGG | 0.405785 | 8.1:+38283992 | MS.gene61041:CDS |
CCTAACACATGCTCCCAAAA+TGG | 0.414546 | 8.1:-38283721 | None:intergenic |
AACACCTGTTGCAACTCTTC+CGG | 0.415302 | 8.1:-38283950 | None:intergenic |
TTAGTTACTGCACCCAAATC+AGG | 0.423021 | 8.1:+38283316 | MS.gene61041:CDS |
GATTCTTCTTCATTAGAGAA+TGG | 0.438105 | 8.1:-38283856 | None:intergenic |
GGTTGGAAGTGAGCAAAGGA+TGG | 0.443953 | 8.1:-38283408 | None:intergenic |
AGGATATTGGAAGGAAAGCT+TGG | 0.446351 | 8.1:+38283741 | MS.gene61041:CDS |
AAGACATGTTTGTTTCACTT+TGG | 0.453802 | 8.1:+38283605 | MS.gene61041:CDS |
TAAGATGATATCTGAATGTA+GGG | 0.458473 | 8.1:-38283296 | None:intergenic |
CTAAGATGATATCTGAATGT+AGG | 0.461761 | 8.1:-38283297 | None:intergenic |
GTTGATTTCCACCTTGCCAT+TGG | 0.463950 | 8.1:+38283174 | MS.gene61041:CDS |
TTGGAAGAGATAAAGAGTTA+AGG | 0.475248 | 8.1:-38283492 | None:intergenic |
CACTATCACCGAAAATAAAG+TGG | 0.478259 | 8.1:+38284053 | MS.gene61041:CDS |
TATATCATCAACCATGCCCT+TGG | 0.479593 | 8.1:-38283878 | None:intergenic |
GCCCACACCCATCAATATCA+AGG | 0.486161 | 8.1:+38283214 | MS.gene61041:CDS |
TCCAATCTCCGACTTGGCCA+TGG | 0.486552 | 8.1:-38283993 | None:intergenic |
CGATCATTTCAGTTGTGAGA+AGG | 0.489768 | 8.1:-38284020 | None:intergenic |
TGAGAACTTGAGCAACTTGG+AGG | 0.492399 | 8.1:+38283918 | MS.gene61041:CDS |
GAAAATAAAGTGGGTAAACA+TGG | 0.493210 | 8.1:+38284063 | MS.gene61041:CDS |
ATGGGTGTGGGCTAAAATCC+AGG | 0.498380 | 8.1:-38283203 | None:intergenic |
AACTTGGAGGTCAACAAGAC+CGG | 0.513880 | 8.1:+38283931 | MS.gene61041:CDS |
AGAGATAAAGAGTTAAGGTC+AGG | 0.518499 | 8.1:-38283487 | None:intergenic |
CCAAAATCCTTGATATTGAT+GGG | 0.519262 | 8.1:-38283221 | None:intergenic |
CACCCAAATCAGGTACCACT+TGG | 0.520210 | 8.1:+38283326 | MS.gene61041:CDS |
ATAAAGGTCAATCTCCAAGA+AGG | 0.527045 | 8.1:-38283446 | None:intergenic |
ATCCTTGATATTGATGGGTG+TGG | 0.532941 | 8.1:-38283216 | None:intergenic |
AAGACCGGAAGAGTTGCAAC+AGG | 0.546469 | 8.1:+38283946 | MS.gene61041:CDS |
CTCTAATGAAGAAGAATCCA+AGG | 0.547301 | 8.1:+38283861 | MS.gene61041:CDS |
AAAGCCTCTTCTAATGGAAG+TGG | 0.551607 | 8.1:-38283664 | None:intergenic |
GTTGGAAGTGAGCAAAGGAT+GGG | 0.551647 | 8.1:-38283407 | None:intergenic |
AAATATTTGGATACTTGTTG+CGG | 0.557852 | 8.1:-38283378 | None:intergenic |
GGGAACAAGATCATGAGGGT+TGG | 0.560936 | 8.1:-38283425 | None:intergenic |
GCATGTGTTAGGATATTGGA+AGG | 0.580243 | 8.1:+38283732 | MS.gene61041:CDS |
TAAAGGTCAATCTCCAAGAA+GGG | 0.586164 | 8.1:-38283445 | None:intergenic |
TGTGAAAGAATCAACTTGCA+AGG | 0.588731 | 8.1:+38283558 | MS.gene61041:CDS |
TGAAGAAGAATCCAAGGGCA+TGG | 0.589866 | 8.1:+38283867 | MS.gene61041:CDS |
AAGCTTGGAAAGGCCAGAGA+AGG | 0.595580 | 8.1:+38283756 | MS.gene61041:CDS |
TGACTTAAGCCAAGAATGCA+AGG | 0.597377 | 8.1:+38283150 | MS.gene61041:CDS |
ATGTGTGTGGAAAAGAGTCT+TGG | 0.597739 | 8.1:-38283511 | None:intergenic |
AGGACCACTTCCATTAGAAG+AGG | 0.602220 | 8.1:+38283660 | MS.gene61041:CDS |
AAGAAGGGAACAAGATCATG+AGG | 0.606173 | 8.1:-38283430 | None:intergenic |
ACTTTGGCATTTCTCAAACA+AGG | 0.607779 | 8.1:+38283621 | MS.gene61041:CDS |
AGTCAATGCTTTGATCCAAG+TGG | 0.620945 | 8.1:-38283341 | None:intergenic |
AAAATAAAGTGGGTAAACAT+GGG | 0.621517 | 8.1:+38284064 | MS.gene61041:CDS |
AAGGTAAGAGCACAGAGTAG+AGG | 0.625492 | 8.1:+38283640 | MS.gene61041:CDS |
TCCTTGATATTGATGGGTGT+GGG | 0.625795 | 8.1:-38283215 | None:intergenic |
TCTGACAAGATAAAACACCT+TGG | 0.628186 | 8.1:-38283261 | None:intergenic |
ACTATCACCGAAAATAAAGT+GGG | 0.651764 | 8.1:+38284054 | MS.gene61041:CDS |
TGAGGGTTGGAAGTGAGCAA+AGG | 0.653409 | 8.1:-38283412 | None:intergenic |
CAAAACACAAGGAATGTGTG+TGG | 0.659728 | 8.1:-38283524 | None:intergenic |
ATTGGAAGGAAAGCTTGGAA+AGG | 0.672349 | 8.1:+38283746 | MS.gene61041:CDS |
TCTAATGAAGAAGAATCCAA+GGG | 0.674490 | 8.1:+38283862 | MS.gene61041:CDS |
AGAAGGGAACAAGATCATGA+GGG | 0.698050 | 8.1:-38283429 | None:intergenic |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | ATCTTTTTCAAATAAAAACT+AGG | - | chr8.1:38283817-38283836 | None:intergenic | 15.0% |
! | AAAATAAAGTGGGTAAACAT+GGG | + | chr8.1:38284064-38284083 | MS.gene61041:CDS | 25.0% |
! | CATAATCTTTGTCACTATAA+AGG | - | chr8.1:38283465-38283484 | None:intergenic | 25.0% |
! | TAAGATGATATCTGAATGTA+GGG | - | chr8.1:38283299-38283318 | None:intergenic | 25.0% |
!! | AAATATTTGGATACTTGTTG+CGG | - | chr8.1:38283381-38283400 | None:intergenic | 25.0% |
!!! | ATGTTTACCCACTTTATTTT+CGG | - | chr8.1:38284064-38284083 | None:intergenic | 25.0% |
AAGACATGTTTGTTTCACTT+TGG | + | chr8.1:38283605-38283624 | MS.gene61041:CDS | 30.0% | |
ACTATCACCGAAAATAAAGT+GGG | + | chr8.1:38284054-38284073 | MS.gene61041:CDS | 30.0% | |
AGTGAAACAAACATGTCTTT+AGG | - | chr8.1:38283604-38283623 | None:intergenic | 30.0% | |
CCAAAATCCTTGATATTGAT+GGG | - | chr8.1:38283224-38283243 | None:intergenic | 30.0% | |
CTAAGATGATATCTGAATGT+AGG | - | chr8.1:38283300-38283319 | None:intergenic | 30.0% | |
GAAAATAAAGTGGGTAAACA+TGG | + | chr8.1:38284063-38284082 | MS.gene61041:CDS | 30.0% | |
GATTCTTCTTCATTAGAGAA+TGG | - | chr8.1:38283859-38283878 | None:intergenic | 30.0% | |
GGATGGGAGTTATAAATATT+TGG | - | chr8.1:38283394-38283413 | None:intergenic | 30.0% | |
TCCAAAATCCTTGATATTGA+TGG | - | chr8.1:38283225-38283244 | None:intergenic | 30.0% | |
TCTAATGAAGAAGAATCCAA+GGG | + | chr8.1:38283862-38283881 | MS.gene61041:CDS | 30.0% | |
TTGGAAGAGATAAAGAGTTA+AGG | - | chr8.1:38283495-38283514 | None:intergenic | 30.0% | |
TTTATAAACATCACCTTCTC+TGG | - | chr8.1:38283772-38283791 | None:intergenic | 30.0% | |
!! | GTTGATTCTTTCACAGATTT+TGG | - | chr8.1:38283553-38283572 | None:intergenic | 30.0% |
!!! | AATAAAGCTTTTTTTCGCCA+TGG | + | chr8.1:38283976-38283995 | MS.gene61041:CDS | 30.0% |
AAATCAACTCCTTGCATTCT+TGG | - | chr8.1:38283162-38283181 | None:intergenic | 35.0% | |
ACTTTGGCATTTCTCAAACA+AGG | + | chr8.1:38283621-38283640 | MS.gene61041:CDS | 35.0% | |
AGAGATAAAGAGTTAAGGTC+AGG | - | chr8.1:38283490-38283509 | None:intergenic | 35.0% | |
ATAAAGGTCAATCTCCAAGA+AGG | - | chr8.1:38283449-38283468 | None:intergenic | 35.0% | |
ATTGCCACAAAAATTCTCCA+AGG | + | chr8.1:38283244-38283263 | MS.gene61041:CDS | 35.0% | |
CACTATCACCGAAAATAAAG+TGG | + | chr8.1:38284053-38284072 | MS.gene61041:CDS | 35.0% | |
CTCTAATGAAGAAGAATCCA+AGG | + | chr8.1:38283861-38283880 | MS.gene61041:CDS | 35.0% | |
TAAAGGTCAATCTCCAAGAA+GGG | - | chr8.1:38283448-38283467 | None:intergenic | 35.0% | |
TCTGACAAGATAAAACACCT+TGG | - | chr8.1:38283264-38283283 | None:intergenic | 35.0% | |
TGTGAAAGAATCAACTTGCA+AGG | + | chr8.1:38283558-38283577 | MS.gene61041:CDS | 35.0% | |
! | AACACCTTGGAGAATTTTTG+TGG | - | chr8.1:38283251-38283270 | None:intergenic | 35.0% |
! | CCCATCAATATCAAGGATTT+TGG | + | chr8.1:38283221-38283240 | MS.gene61041:CDS | 35.0% |
! | GAGTTCTTATGGACCATTTT+GGG | + | chr8.1:38283708-38283727 | MS.gene61041:CDS | 35.0% |
! | TGAGTTCTTATGGACCATTT+TGG | + | chr8.1:38283707-38283726 | MS.gene61041:CDS | 35.0% |
!! | AAAATCCAGGCTTTTTCCAA+TGG | - | chr8.1:38283193-38283212 | None:intergenic | 35.0% |
!! | GATTTTGGCAACAAAACACA+AGG | - | chr8.1:38283538-38283557 | None:intergenic | 35.0% |
!! | GCTTTTGAGAGTTTTTGTAG+AGG | + | chr8.1:38283682-38283701 | MS.gene61041:CDS | 35.0% |
!! | TTTTGAGAACTTGAGCAACT+TGG | + | chr8.1:38283915-38283934 | MS.gene61041:CDS | 35.0% |
AAAGCCTCTTCTAATGGAAG+TGG | - | chr8.1:38283667-38283686 | None:intergenic | 40.0% | |
AAGAAGGGAACAAGATCATG+AGG | - | chr8.1:38283433-38283452 | None:intergenic | 40.0% | |
AGAAGGGAACAAGATCATGA+GGG | - | chr8.1:38283432-38283451 | None:intergenic | 40.0% | |
AGGATATTGGAAGGAAAGCT+TGG | + | chr8.1:38283741-38283760 | MS.gene61041:CDS | 40.0% | |
AGTCAATGCTTTGATCCAAG+TGG | - | chr8.1:38283344-38283363 | None:intergenic | 40.0% | |
ATCCAAGTGGTACCTGATTT+GGG | - | chr8.1:38283331-38283350 | None:intergenic | 40.0% | |
ATGTGTGTGGAAAAGAGTCT+TGG | - | chr8.1:38283514-38283533 | None:intergenic | 40.0% | |
ATTGGAAGGAAAGCTTGGAA+AGG | + | chr8.1:38283746-38283765 | MS.gene61041:CDS | 40.0% | |
CAAAACACAAGGAATGTGTG+TGG | - | chr8.1:38283527-38283546 | None:intergenic | 40.0% | |
CGATCATTTCAGTTGTGAGA+AGG | - | chr8.1:38284023-38284042 | None:intergenic | 40.0% | |
CTCTCAAAAGCCTCTTCTAA+TGG | - | chr8.1:38283673-38283692 | None:intergenic | 40.0% | |
GCATGTGTTAGGATATTGGA+AGG | + | chr8.1:38283732-38283751 | MS.gene61041:CDS | 40.0% | |
GTCATCATCCTGCAAGTATT+TGG | - | chr8.1:38283134-38283153 | None:intergenic | 40.0% | |
TATATCATCAACCATGCCCT+TGG | - | chr8.1:38283881-38283900 | None:intergenic | 40.0% | |
TCATGATCTTGTTCCCTTCT+TGG | + | chr8.1:38283432-38283451 | MS.gene61041:CDS | 40.0% | |
TCTTGTAGCCAAATACTTGC+AGG | + | chr8.1:38283123-38283142 | MS.gene61041:CDS | 40.0% | |
TGACTTAAGCCAAGAATGCA+AGG | + | chr8.1:38283150-38283169 | MS.gene61041:CDS | 40.0% | |
TGTAGAGGAGTGAGTTCTTA+TGG | + | chr8.1:38283697-38283716 | MS.gene61041:CDS | 40.0% | |
TTAGTTACTGCACCCAAATC+AGG | + | chr8.1:38283316-38283335 | MS.gene61041:CDS | 40.0% | |
! | ATCCTTGATATTGATGGGTG+TGG | - | chr8.1:38283219-38283238 | None:intergenic | 40.0% |
! | TCCTTGATATTGATGGGTGT+GGG | - | chr8.1:38283218-38283237 | None:intergenic | 40.0% |
AACACCTGTTGCAACTCTTC+CGG | - | chr8.1:38283953-38283972 | None:intergenic | 45.0% | |
AACTTGGAGGTCAACAAGAC+CGG | + | chr8.1:38283931-38283950 | MS.gene61041:CDS | 45.0% | |
AGGACCACTTCCATTAGAAG+AGG | + | chr8.1:38283660-38283679 | MS.gene61041:CDS | 45.0% | |
CCTAACACATGCTCCCAAAA+TGG | - | chr8.1:38283724-38283743 | None:intergenic | 45.0% | |
GATCCAAGTGGTACCTGATT+TGG | - | chr8.1:38283332-38283351 | None:intergenic | 45.0% | |
GTTGGAAGTGAGCAAAGGAT+GGG | - | chr8.1:38283410-38283429 | None:intergenic | 45.0% | |
TGAAGAAGAATCCAAGGGCA+TGG | + | chr8.1:38283867-38283886 | MS.gene61041:CDS | 45.0% | |
TGAGAACTTGAGCAACTTGG+AGG | + | chr8.1:38283918-38283937 | MS.gene61041:CDS | 45.0% | |
! | AAGGTAAGAGCACAGAGTAG+AGG | + | chr8.1:38283640-38283659 | MS.gene61041:CDS | 45.0% |
! | GGGAGCATGTGTTAGGATAT+TGG | + | chr8.1:38283728-38283747 | MS.gene61041:CDS | 45.0% |
! | GGTTTTTCCAATCTCCGACT+TGG | - | chr8.1:38284002-38284021 | None:intergenic | 45.0% |
! | GTTGATTTCCACCTTGCCAT+TGG | + | chr8.1:38283174-38283193 | MS.gene61041:CDS | 45.0% |
!! | CCATTTTGGGAGCATGTGTT+AGG | + | chr8.1:38283721-38283740 | MS.gene61041:CDS | 45.0% |
!!! | TTTTTTCGCCATGGCCAAGT+CGG | + | chr8.1:38283985-38284004 | MS.gene61041:CDS | 45.0% |
AAGACCGGAAGAGTTGCAAC+AGG | + | chr8.1:38283946-38283965 | MS.gene61041:CDS | 50.0% | |
AAGCTTGGAAAGGCCAGAGA+AGG | + | chr8.1:38283756-38283775 | MS.gene61041:CDS | 50.0% | |
CACCCAAATCAGGTACCACT+TGG | + | chr8.1:38283326-38283345 | MS.gene61041:CDS | 50.0% | |
CCTTGCCATTGGAAAAAGCC+TGG | + | chr8.1:38283185-38283204 | MS.gene61041:CDS | 50.0% | |
GCCCACACCCATCAATATCA+AGG | + | chr8.1:38283214-38283233 | MS.gene61041:CDS | 50.0% | |
GGGAACAAGATCATGAGGGT+TGG | - | chr8.1:38283428-38283447 | None:intergenic | 50.0% | |
GGTTGGAAGTGAGCAAAGGA+TGG | - | chr8.1:38283411-38283430 | None:intergenic | 50.0% | |
TGAGGGTTGGAAGTGAGCAA+AGG | - | chr8.1:38283415-38283434 | None:intergenic | 50.0% | |
! | ATGGGTGTGGGCTAAAATCC+AGG | - | chr8.1:38283206-38283225 | None:intergenic | 50.0% |
!! | CCAGGCTTTTTCCAATGGCA+AGG | - | chr8.1:38283188-38283207 | None:intergenic | 50.0% |
!! | GGCTTTTTCCAATGGCAAGG+TGG | - | chr8.1:38283185-38283204 | None:intergenic | 50.0% |
!! | TCCAATCTCCGACTTGGCCA+TGG | - | chr8.1:38283996-38284015 | None:intergenic | 55.0% |
GCCATGGCCAAGTCGGAGAT+TGG | + | chr8.1:38283992-38284011 | MS.gene61041:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.1 | gene | 38283097 | 38284098 | 38283097 | ID=MS.gene61041 |
chr8.1 | mRNA | 38283097 | 38284098 | 38283097 | ID=MS.gene61041.t1;Parent=MS.gene61041 |
chr8.1 | exon | 38283097 | 38284098 | 38283097 | ID=MS.gene61041.t1.exon1;Parent=MS.gene61041.t1 |
chr8.1 | CDS | 38283097 | 38284098 | 38283097 | ID=cds.MS.gene61041.t1;Parent=MS.gene61041.t1 |
Gene Sequence |
Protein sequence |