Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61287.t1 | XP_003608655.2 | 98 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 1.80E-158 | 568.5 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61287.t1 | F4JML5 | 69.6 | 273 | 83 | 0 | 27 | 299 | 28 | 300 | 8.8e-106 | 384.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61287.t1 | G7JHN1 | 98.0 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 1.3e-158 | 568.5 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene97486 | MS.gene61287 | PPI |
| MS.gene071146 | MS.gene61287 | PPI |
| MS.gene071145 | MS.gene61287 | PPI |
| MS.gene61287 | MS.gene97484 | PPI |
| MS.gene029856 | MS.gene61287 | PPI |
| MS.gene61287 | MS.gene022937 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61287.t1 | MTR_4g100350 | 98.000 | 300 | 6 | 0 | 1 | 300 | 1 | 300 | 0.0 | 601 |
| MS.gene61287.t1 | MTR_3g085700 | 29.412 | 255 | 171 | 3 | 52 | 298 | 17 | 270 | 8.31e-28 | 108 |
| MS.gene61287.t1 | MTR_4g120130 | 34.536 | 194 | 122 | 4 | 48 | 239 | 12 | 202 | 5.15e-25 | 105 |
| MS.gene61287.t1 | MTR_4g122220 | 28.049 | 246 | 171 | 3 | 53 | 296 | 15 | 256 | 1.09e-23 | 97.8 |
| MS.gene61287.t1 | MTR_8g064990 | 27.309 | 249 | 175 | 4 | 53 | 298 | 3 | 248 | 5.08e-22 | 93.2 |
| MS.gene61287.t1 | MTR_8g064990 | 25.170 | 294 | 212 | 5 | 10 | 298 | 32 | 322 | 4.15e-21 | 92.0 |
| MS.gene61287.t1 | MTR_2027s0010 | 28.509 | 228 | 150 | 4 | 57 | 276 | 13 | 235 | 7.20e-21 | 89.7 |
| MS.gene61287.t1 | MTR_0837s0020 | 44.762 | 105 | 55 | 1 | 102 | 206 | 206 | 307 | 2.23e-19 | 89.0 |
| MS.gene61287.t1 | MTR_6g087670 | 35.821 | 201 | 120 | 5 | 42 | 236 | 4 | 201 | 1.99e-17 | 82.8 |
| MS.gene61287.t1 | MTR_2g436300 | 33.816 | 207 | 131 | 5 | 48 | 251 | 10 | 213 | 4.87e-17 | 81.6 |
| MS.gene61287.t1 | MTR_1535s0020 | 33.913 | 115 | 74 | 2 | 50 | 163 | 14 | 127 | 1.19e-12 | 64.3 |
| MS.gene61287.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.22e-12 | 67.8 |
| MS.gene61287.t1 | MTR_8g010580 | 26.163 | 172 | 119 | 4 | 57 | 223 | 23 | 191 | 1.32e-12 | 67.8 |
| MS.gene61287.t1 | MTR_8g010580 | 25.862 | 174 | 117 | 5 | 57 | 223 | 23 | 191 | 1.54e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61287.t1 | AT4G16800 | 69.597 | 273 | 83 | 0 | 27 | 299 | 28 | 300 | 3.53e-141 | 400 |
| MS.gene61287.t1 | AT5G43280 | 29.278 | 263 | 168 | 4 | 50 | 297 | 16 | 275 | 9.05e-29 | 111 |
| MS.gene61287.t1 | AT4G16210 | 30.667 | 225 | 140 | 6 | 53 | 271 | 18 | 232 | 8.07e-25 | 100 |
| MS.gene61287.t1 | AT5G43280 | 30.811 | 185 | 111 | 3 | 50 | 220 | 16 | 197 | 1.48e-23 | 96.3 |
| MS.gene61287.t1 | AT1G60550 | 26.690 | 281 | 199 | 5 | 22 | 298 | 54 | 331 | 1.26e-22 | 96.3 |
| MS.gene61287.t1 | AT3G06860 | 37.173 | 191 | 113 | 4 | 53 | 239 | 17 | 204 | 1.98e-17 | 83.2 |
| MS.gene61287.t1 | AT4G29010 | 33.505 | 194 | 123 | 4 | 51 | 241 | 13 | 203 | 2.50e-16 | 79.7 |
| MS.gene61287.t1 | AT4G31810 | 28.488 | 172 | 116 | 5 | 59 | 225 | 56 | 225 | 2.39e-14 | 73.2 |
| MS.gene61287.t1 | AT3G24360 | 22.846 | 267 | 193 | 6 | 33 | 291 | 38 | 299 | 7.09e-13 | 68.9 |
| MS.gene61287.t1 | AT2G30660 | 24.194 | 186 | 129 | 5 | 47 | 225 | 8 | 188 | 3.07e-12 | 67.0 |
| MS.gene61287.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 7.47e-12 | 65.5 |
| MS.gene61287.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 8.59e-12 | 65.5 |
| MS.gene61287.t1 | AT5G65940 | 24.878 | 205 | 141 | 7 | 47 | 244 | 12 | 210 | 8.59e-12 | 65.5 |
| MS.gene61287.t1 | AT5G65940 | 25.128 | 195 | 133 | 7 | 57 | 244 | 22 | 210 | 8.81e-12 | 65.5 |
| MS.gene61287.t1 | AT2G30650 | 25.532 | 188 | 124 | 7 | 47 | 225 | 8 | 188 | 9.10e-11 | 62.4 |
Find 74 sgRNAs with CRISPR-Local
Find 175 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTTCCACATTGACATTTC+TGG | 0.129778 | 8.2:-22644865 | MS.gene61287:CDS |
| TTTACTGGTCGAAAGATTAA+TGG | 0.241785 | 8.2:-22643805 | MS.gene61287:CDS |
| ATGGGTTTGGTGCTGATGAT+AGG | 0.313045 | 8.2:+22645550 | None:intergenic |
| CAAGCCTTCCAGTCGATCTT+TGG | 0.317010 | 8.2:+22642634 | None:intergenic |
| AGTCCAAGATAAGTGTTCTA+TGG | 0.332255 | 8.2:+22645531 | None:intergenic |
| TGTACCCACTATTGCTGTTA+TGG | 0.336211 | 8.2:-22644547 | MS.gene61287:CDS |
| TCTAACATCAGCTTTGGTTT+TGG | 0.336452 | 8.2:-22642687 | MS.gene61287:CDS |
| TTGATCCGCAGTTTAGTTCC+CGG | 0.347590 | 8.2:-22645166 | MS.gene61287:CDS |
| TTAGCCATCCTTACTGCTAC+AGG | 0.361179 | 8.2:+22642740 | None:intergenic |
| CGTAGGAGCAAATGCTTTGA+TGG | 0.365191 | 8.2:-22644346 | MS.gene61287:intron |
| GTCAATTACTGTGTTGCTGC+TGG | 0.380310 | 8.2:-22643370 | MS.gene61287:CDS |
| GACTGATCTAACATCAGCTT+TGG | 0.400861 | 8.2:-22642693 | MS.gene61287:CDS |
| TCTTGGTGGTGGACTTGAAA+TGG | 0.419511 | 8.2:-22644514 | MS.gene61287:CDS |
| GGAAGAAGATTGCTATGATC+AGG | 0.420947 | 8.2:-22642666 | MS.gene61287:CDS |
| AACCCATAGAACACTTATCT+TGG | 0.425465 | 8.2:-22645534 | MS.gene61287:CDS |
| TCCTTCCATAACAGCAATAG+TGG | 0.426484 | 8.2:+22644542 | None:intergenic |
| AGATAAGTGTTCTATGGGTT+TGG | 0.434008 | 8.2:+22645537 | None:intergenic |
| TTGTGCTGGGGCTGATCTAA+AGG | 0.436607 | 8.2:-22645137 | MS.gene61287:intron |
| TTGATGGGTTTGCCAGAGAC+AGG | 0.439262 | 8.2:-22644330 | MS.gene61287:CDS |
| AATCTCACTGGCTCAGATTC+CGG | 0.440580 | 8.2:-22645479 | MS.gene61287:intron |
| AATTTCAAGTGCCTTGGAAT+GGG | 0.444417 | 8.2:+22643342 | None:intergenic |
| TGGTGGACTTGAAATGGCTT+TGG | 0.450397 | 8.2:-22644508 | MS.gene61287:CDS |
| TGGCATTGAGGCGCTATCAA+TGG | 0.451098 | 8.2:-22643785 | MS.gene61287:CDS |
| CCGAGCAATTTCAAGTGCCT+TGG | 0.455064 | 8.2:+22643336 | None:intergenic |
| AGGGATTATTGAAGTTAGCT+TGG | 0.460766 | 8.2:-22645287 | MS.gene61287:CDS |
| CCAAGGCACTTGAAATTGCT+CGG | 0.465476 | 8.2:-22643336 | MS.gene61287:CDS |
| GGCATTGAGGCGCTATCAAT+GGG | 0.465523 | 8.2:-22643784 | MS.gene61287:intron |
| TGCTCGGGATATCAATCAAA+AGG | 0.472234 | 8.2:-22643320 | MS.gene61287:intron |
| CAATTTCAAGTGCCTTGGAA+TGG | 0.474872 | 8.2:+22643341 | None:intergenic |
| ACAGGACTTGCTATAATCCC+TGG | 0.491046 | 8.2:-22644312 | MS.gene61287:CDS |
| TGGGTTTGGTGCTGATGATA+GGG | 0.491563 | 8.2:+22645551 | None:intergenic |
| TGATCCGCAGTTTAGTTCCC+GGG | 0.494453 | 8.2:-22645165 | MS.gene61287:CDS |
| TTTCACTCGCCAGTGTACCT+TGG | 0.495193 | 8.2:+22642587 | None:intergenic |
| GTCCAAGATAAGTGTTCTAT+GGG | 0.506385 | 8.2:+22645532 | None:intergenic |
| AATAGGGCCCTGTAGCAGTA+AGG | 0.507132 | 8.2:-22642748 | MS.gene61287:intron |
| CAAGGCACTTGAAATTGCTC+GGG | 0.509246 | 8.2:-22643335 | MS.gene61287:CDS |
| TAGCCATCCTTACTGCTACA+GGG | 0.516527 | 8.2:+22642741 | None:intergenic |
| CAAAGATCGACTGGAAGGCT+TGG | 0.520217 | 8.2:-22642633 | MS.gene61287:CDS |
| GAAGGAGTAGCTCTTGGTGG+TGG | 0.527355 | 8.2:-22644525 | MS.gene61287:CDS |
| GTCAAGCTTCACAATCTCAC+TGG | 0.527894 | 8.2:-22645491 | MS.gene61287:CDS |
| ATTATAGCAAGTCCTGTCTC+TGG | 0.532014 | 8.2:+22644318 | None:intergenic |
| AAGAGCTATTAACGAGGGAG+TGG | 0.534208 | 8.2:-22642717 | MS.gene61287:CDS |
| GCATGTGATATTCGAATATG+TGG | 0.548943 | 8.2:-22644486 | MS.gene61287:intron |
| AACACAGCGACTACCTAGAT+TGG | 0.556542 | 8.2:-22643857 | MS.gene61287:CDS |
| CTTGTCATGCACAGGGCAGG+TGG | 0.558617 | 8.2:-22643880 | MS.gene61287:intron |
| GTTGAATACCAAAGATCGAC+TGG | 0.559419 | 8.2:-22642642 | MS.gene61287:CDS |
| GTAGGAGCAAATGCTTTGAT+GGG | 0.562937 | 8.2:-22644345 | MS.gene61287:intron |
| GTTATGGAAGGAGTAGCTCT+TGG | 0.563981 | 8.2:-22644531 | MS.gene61287:CDS |
| GGTAGGAAAATCAGTAGCAA+AGG | 0.575856 | 8.2:-22643836 | MS.gene61287:CDS |
| ATGGAAGGAGTAGCTCTTGG+TGG | 0.578725 | 8.2:-22644528 | MS.gene61287:CDS |
| ATCACAGGAACGCAGGACCA+TGG | 0.578834 | 8.2:-22644922 | MS.gene61287:intron |
| TGGCTGCATTTGCTGAAAAG+CGG | 0.579686 | 8.2:-22642613 | MS.gene61287:CDS |
| CTTAGCCTCGGATTGATCCA+TGG | 0.588003 | 8.2:+22644905 | None:intergenic |
| TGCTGGTGAAGCCCATTCCA+AGG | 0.590084 | 8.2:-22643353 | MS.gene61287:CDS |
| CAGGACTTGCTATAATCCCT+GGG | 0.590587 | 8.2:-22644311 | MS.gene61287:intron |
| CCCACTATTGCTGTTATGGA+AGG | 0.594271 | 8.2:-22644543 | MS.gene61287:CDS |
| GCCCCAGCACAAAATACCCC+GGG | 0.600202 | 8.2:+22645148 | None:intergenic |
| AGCCCCAGCACAAAATACCC+CGG | 0.602391 | 8.2:+22645147 | None:intergenic |
| CAGCGACTACCTAGATTGGT+AGG | 0.605465 | 8.2:-22643853 | MS.gene61287:CDS |
| TTCCACATTGACATTTCTGG+AGG | 0.607707 | 8.2:-22644862 | MS.gene61287:intron |
| GGGCCCTGTAGCAGTAAGGA+TGG | 0.608076 | 8.2:-22642744 | MS.gene61287:CDS |
| AAGCGGAAACCAAGGTACAC+TGG | 0.609624 | 8.2:-22642596 | MS.gene61287:CDS |
| AATACCAAAGATCGACTGGA+AGG | 0.626742 | 8.2:-22642638 | MS.gene61287:CDS |
| TTGCTGAAAAGCGGAAACCA+AGG | 0.638227 | 8.2:-22642604 | MS.gene61287:CDS |
| TCGAAAGATTAATGGCATTG+AGG | 0.647855 | 8.2:-22643797 | MS.gene61287:CDS |
| TTATCTGATCACAGGAACGC+AGG | 0.649519 | 8.2:-22644929 | MS.gene61287:intron |
| CCTTCCATAACAGCAATAGT+GGG | 0.670324 | 8.2:+22644543 | None:intergenic |
| GATCCGCAGTTTAGTTCCCG+GGG | 0.677040 | 8.2:-22645164 | MS.gene61287:CDS |
| GCTAAAAGAGCTATTAACGA+GGG | 0.677278 | 8.2:-22642722 | MS.gene61287:CDS |
| CAGGACCATGGATCAATCCG+AGG | 0.692671 | 8.2:-22644910 | MS.gene61287:CDS |
| GGCTAAAAGAGCTATTAACG+AGG | 0.701626 | 8.2:-22642723 | MS.gene61287:CDS |
| AACCTCCAGAAATGTCAATG+TGG | 0.701845 | 8.2:+22644860 | None:intergenic |
| ATACCCCGGGAACTAAACTG+CGG | 0.727381 | 8.2:+22645161 | None:intergenic |
| ATAGGGAAAGAGATGCTGCG+TGG | 0.727860 | 8.2:-22645241 | MS.gene61287:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAACATTAATTTAAACTAA+TGG | - | chr8.2:22643241-22643260 | MS.gene61287:intron | 10.0% |
| !! | ATTCTAATTAAAAGTAATTT+CGG | + | chr8.2:22645222-22645241 | None:intergenic | 10.0% |
| !!! | AAAAAATATAGTTTTTGTTA+TGG | + | chr8.2:22644685-22644704 | None:intergenic | 10.0% |
| !!! | AAGAATTTAGTAATTTTTTT+GGG | + | chr8.2:22644712-22644731 | None:intergenic | 10.0% |
| !!! | CTTTTAATTAGAATATATTT+TGG | - | chr8.2:22645228-22645247 | MS.gene61287:CDS | 10.0% |
| !! | AAAATAAAAAAATACTATGC+TGG | + | chr8.2:22643620-22643639 | None:intergenic | 15.0% |
| !! | ACTCTATGAAAATTAATTAT+AGG | + | chr8.2:22645298-22645317 | None:intergenic | 15.0% |
| !!! | ATCTACCTATTATTTTATTT+TGG | + | chr8.2:22643984-22644003 | None:intergenic | 15.0% |
| !!! | CAAGAATTTAGTAATTTTTT+TGG | + | chr8.2:22644713-22644732 | None:intergenic | 15.0% |
| !!! | TGTCAAATTTTCAATTAAAA+AGG | + | chr8.2:22645380-22645399 | None:intergenic | 15.0% |
| !!! | TTGATTTTTCATTTTTCAAA+GGG | - | chr8.2:22645039-22645058 | MS.gene61287:intron | 15.0% |
| !! | ACATACTTTAATGATTCAAT+TGG | - | chr8.2:22645142-22645161 | MS.gene61287:CDS | 20.0% |
| !! | AGCTACCAAAATAAAATAAT+AGG | - | chr8.2:22643976-22643995 | MS.gene61287:intron | 20.0% |
| !! | ATTACAAGTCCATATATAAA+TGG | - | chr8.2:22644991-22645010 | MS.gene61287:intron | 20.0% |
| !! | ATTTATATATGGACTTGTAA+TGG | + | chr8.2:22644992-22645011 | None:intergenic | 20.0% |
| !! | TATAAAGAGAAAATACTTGT+AGG | - | chr8.2:22645329-22645348 | MS.gene61287:intron | 20.0% |
| !! | TTATGACATTTAGAAATGTA+GGG | - | chr8.2:22644951-22644970 | MS.gene61287:intron | 20.0% |
| !! | TTTATGACATTTAGAAATGT+AGG | - | chr8.2:22644950-22644969 | MS.gene61287:intron | 20.0% |
| !!! | AAAATTTGACATTTGAGATA+AGG | - | chr8.2:22645389-22645408 | MS.gene61287:intron | 20.0% |
| !!! | AAATATAGTTTTTGTTATGG+TGG | + | chr8.2:22644682-22644701 | None:intergenic | 20.0% |
| !!! | AGTTAGAGTAAACTTTTAAT+AGG | - | chr8.2:22645438-22645457 | MS.gene61287:intron | 20.0% |
| !!! | GTTAGAGTAAACTTTTAATA+GGG | - | chr8.2:22645439-22645458 | MS.gene61287:intron | 20.0% |
| !!! | GTTGATTTTTCATTTTTCAA+AGG | - | chr8.2:22645038-22645057 | MS.gene61287:intron | 20.0% |
| !!! | TAAATTTTCCAGATACATAA+TGG | - | chr8.2:22644005-22644024 | MS.gene61287:intron | 20.0% |
| !!! | TGATTTTTCATTTTTCAAAG+GGG | - | chr8.2:22645040-22645059 | MS.gene61287:intron | 20.0% |
| !!! | TTAATTTTCATAGAGTTGTT+TGG | - | chr8.2:22645302-22645321 | MS.gene61287:intron | 20.0% |
| !!! | TTGAATTTTGTTTGTTTACA+GGG | - | chr8.2:22642897-22642916 | MS.gene61287:intron | 20.0% |
| !!! | TTTGAATTTTGTTTGTTTAC+AGG | - | chr8.2:22642896-22642915 | MS.gene61287:intron | 20.0% |
| ! | ATAAATAACCAACTTGTGTT+TGG | - | chr8.2:22644236-22644255 | MS.gene61287:intron | 25.0% |
| ! | ATCTTAAAATGAAAGAGACT+TGG | - | chr8.2:22643118-22643137 | MS.gene61287:intron | 25.0% |
| ! | TCAACTAATTCTAACAAAAC+TGG | + | chr8.2:22642798-22642817 | None:intergenic | 25.0% |
| !! | AATTGCATCAATTTGTTTGT+AGG | - | chr8.2:22643765-22643784 | MS.gene61287:intron | 25.0% |
| !! | AATTTGTTTGTAGGATAGTT+TGG | - | chr8.2:22643774-22643793 | MS.gene61287:intron | 25.0% |
| !!! | CTACTATTGTTTCTTTTTGT+GGG | - | chr8.2:22643491-22643510 | MS.gene61287:intron | 25.0% |
| !!! | GCAAAGGATATTATTTTTAC+TGG | - | chr8.2:22644383-22644402 | MS.gene61287:intron | 25.0% |
| !!! | TACTATTGTTTCTTTTTGTG+GGG | - | chr8.2:22643492-22643511 | MS.gene61287:intron | 25.0% |
| AAAATAGAGAGAGAAGTTAC+CGG | + | chr8.2:22642746-22642765 | None:intergenic | 30.0% | |
| AATTTGTAAACATCATACCC+AGG | + | chr8.2:22643912-22643931 | None:intergenic | 30.0% | |
| ACACAGCAAATGAATATGAA+AGG | + | chr8.2:22643548-22643567 | None:intergenic | 30.0% | |
| ATTCACAAAAAACTTAGCCT+CGG | + | chr8.2:22643313-22643332 | None:intergenic | 30.0% | |
| ATTTGTAAACATCATACCCA+GGG | + | chr8.2:22643911-22643930 | None:intergenic | 30.0% | |
| CTGAAGCTAAAAATGCTATA+GGG | - | chr8.2:22642945-22642964 | MS.gene61287:intron | 30.0% | |
| TATACTCTCCATTATGTATC+TGG | + | chr8.2:22644016-22644035 | None:intergenic | 30.0% | |
| TGATCACTATGTAAAGTGAT+CGG | - | chr8.2:22642858-22642877 | MS.gene61287:intron | 30.0% | |
| TGGTTATTTATGCTCATTGT+AGG | + | chr8.2:22644227-22644246 | None:intergenic | 30.0% | |
| TTTACTGGTCGAAAGATTAA+TGG | - | chr8.2:22644398-22644417 | MS.gene61287:intron | 30.0% | |
| ! | ATTCTTGTTTATCTGATCAC+AGG | - | chr8.2:22643266-22643285 | MS.gene61287:intron | 30.0% |
| ! | GGACTACTTTATTTGTGAAA+CGG | + | chr8.2:22644741-22644760 | None:intergenic | 30.0% |
| !! | GCTACTATTGTTTCTTTTTG+TGG | - | chr8.2:22643490-22643509 | MS.gene61287:intron | 30.0% |
| !! | GGAGCTTAACATAATTTGTT+AGG | - | chr8.2:22643139-22643158 | MS.gene61287:intron | 30.0% |
| !!! | CTTTTTGTTTGAGTTGAGAA+TGG | - | chr8.2:22644152-22644171 | MS.gene61287:intron | 30.0% |
| !!! | TGTTTCTTTTTTCATTGCGT+AGG | - | chr8.2:22643840-22643859 | MS.gene61287:CDS | 30.0% |
| AACCCATAGAACACTTATCT+TGG | - | chr8.2:22642669-22642688 | MS.gene61287:CDS | 35.0% | |
| ACAACTTTCCAAACACAAGT+TGG | + | chr8.2:22644247-22644266 | None:intergenic | 35.0% | |
| AGATAAGTGTTCTATGGGTT+TGG | + | chr8.2:22642669-22642688 | None:intergenic | 35.0% | |
| AGGGATTATTGAAGTTAGCT+TGG | - | chr8.2:22642916-22642935 | MS.gene61287:intron | 35.0% | |
| AGTCCAAGATAAGTGTTCTA+TGG | + | chr8.2:22642675-22642694 | None:intergenic | 35.0% | |
| ATACTCTATTGAGTCTTGAC+TGG | + | chr8.2:22645196-22645215 | None:intergenic | 35.0% | |
| ATCACTATGTAAAGTGATCG+GGG | - | chr8.2:22642860-22642879 | MS.gene61287:intron | 35.0% | |
| ATGAAGCGCAAAGATATAAG+AGG | - | chr8.2:22644493-22644512 | MS.gene61287:CDS | 35.0% | |
| ATGTAATCTTGTCATGCACA+GGG | - | chr8.2:22644316-22644335 | MS.gene61287:CDS | 35.0% | |
| CATTTAGAAATGTAGGGATC+AGG | - | chr8.2:22644957-22644976 | MS.gene61287:intron | 35.0% | |
| CCTGAAGCTAAAAATGCTAT+AGG | - | chr8.2:22642944-22642963 | MS.gene61287:intron | 35.0% | |
| GATCACTATGTAAAGTGATC+GGG | - | chr8.2:22642859-22642878 | MS.gene61287:intron | 35.0% | |
| GCATGTGATATTCGAATATG+TGG | - | chr8.2:22643717-22643736 | MS.gene61287:intron | 35.0% | |
| GCTAAAAGAGCTATTAACGA+GGG | - | chr8.2:22645481-22645500 | MS.gene61287:CDS | 35.0% | |
| GTCCAAGATAAGTGTTCTAT+GGG | + | chr8.2:22642674-22642693 | None:intergenic | 35.0% | |
| TATGCTCATTGTAGGCTTTA+GGG | + | chr8.2:22644219-22644238 | None:intergenic | 35.0% | |
| TCAAACAAAAAGCAAGTCAC+TGG | + | chr8.2:22644144-22644163 | None:intergenic | 35.0% | |
| TCGAAAGATTAATGGCATTG+AGG | - | chr8.2:22644406-22644425 | MS.gene61287:intron | 35.0% | |
| TTATGCTCATTGTAGGCTTT+AGG | + | chr8.2:22644220-22644239 | None:intergenic | 35.0% | |
| ! | AATTTCAAGTGCCTTGGAAT+GGG | + | chr8.2:22644864-22644883 | None:intergenic | 35.0% |
| ! | CAGTCACTGCCATTTATATA+TGG | + | chr8.2:22645003-22645022 | None:intergenic | 35.0% |
| ! | TTGACATTTGAGATAAGGCA+TGG | - | chr8.2:22645394-22645413 | MS.gene61287:intron | 35.0% |
| !! | ACTGATTTTCCTACCAATCT+AGG | + | chr8.2:22644362-22644381 | None:intergenic | 35.0% |
| !! | ATTGTTTCTTTTTGTGGGGA+AGG | - | chr8.2:22643496-22643515 | MS.gene61287:intron | 35.0% |
| !! | TCTAACATCAGCTTTGGTTT+TGG | - | chr8.2:22645516-22645535 | MS.gene61287:CDS | 35.0% |
| !! | TTGTTTCTTTTTGTGGGGAA+GGG | - | chr8.2:22643497-22643516 | MS.gene61287:intron | 35.0% |
| !!! | CCTATAGCATTTTTAGCTTC+AGG | + | chr8.2:22642947-22642966 | None:intergenic | 35.0% |
| !!! | GGATTTTTTCTTTGCTTTCC+TGG | + | chr8.2:22644661-22644680 | None:intergenic | 35.0% |
| !!! | TTTCGAAGTTTTGAAGTAGG+AGG | + | chr8.2:22642632-22642651 | None:intergenic | 35.0% |
| AAAGGGGTCTATTGTGAAAG+AGG | - | chr8.2:22645056-22645075 | MS.gene61287:intron | 40.0% | |
| AACCTCCAGAAATGTCAATG+TGG | + | chr8.2:22643346-22643365 | None:intergenic | 40.0% | |
| AATACCAAAGATCGACTGGA+AGG | - | chr8.2:22645565-22645584 | MS.gene61287:CDS | 40.0% | |
| ACTGGCATATTCAGATTACC+AGG | + | chr8.2:22645178-22645197 | None:intergenic | 40.0% | |
| ATTATAGCAAGTCCTGTCTC+TGG | + | chr8.2:22643888-22643907 | None:intergenic | 40.0% | |
| CAAACTTCCATTGTCTTGGA+GGG | - | chr8.2:22644583-22644602 | MS.gene61287:intron | 40.0% | |
| CATGTAATCTTGTCATGCAC+AGG | - | chr8.2:22644315-22644334 | MS.gene61287:CDS | 40.0% | |
| CCTTCCATAACAGCAATAGT+GGG | + | chr8.2:22643663-22643682 | None:intergenic | 40.0% | |
| CTGGCATATTCAGATTACCA+GGG | + | chr8.2:22645177-22645196 | None:intergenic | 40.0% | |
| CTGTCAAACTTCCATTGTCT+TGG | - | chr8.2:22644579-22644598 | MS.gene61287:intron | 40.0% | |
| GAAAGATCATATGTTCTCGC+AGG | - | chr8.2:22644806-22644825 | MS.gene61287:intron | 40.0% | |
| GACTGATCTAACATCAGCTT+TGG | - | chr8.2:22645510-22645529 | MS.gene61287:CDS | 40.0% | |
| GGAAGAAGATTGCTATGATC+AGG | - | chr8.2:22645537-22645556 | MS.gene61287:CDS | 40.0% | |
| GGCTAAAAGAGCTATTAACG+AGG | - | chr8.2:22645480-22645499 | MS.gene61287:CDS | 40.0% | |
| GGTAGGAAAATCAGTAGCAA+AGG | - | chr8.2:22644367-22644386 | MS.gene61287:intron | 40.0% | |
| GTAGGAGCAAATGCTTTGAT+GGG | - | chr8.2:22643858-22643877 | MS.gene61287:CDS | 40.0% | |
| GTTACAGCATTATAGCGTAG+TGG | - | chr8.2:22643180-22643199 | MS.gene61287:intron | 40.0% | |
| GTTGAATACCAAAGATCGAC+TGG | - | chr8.2:22645561-22645580 | MS.gene61287:CDS | 40.0% | |
| TCAAACTTCCATTGTCTTGG+AGG | - | chr8.2:22644582-22644601 | MS.gene61287:intron | 40.0% | |
| TCCTTCCATAACAGCAATAG+TGG | + | chr8.2:22643664-22643683 | None:intergenic | 40.0% | |
| TCGTTCCACATTGACATTTC+TGG | - | chr8.2:22643338-22643357 | MS.gene61287:CDS | 40.0% | |
| TGCTCGGGATATCAATCAAA+AGG | - | chr8.2:22644883-22644902 | MS.gene61287:CDS | 40.0% | |
| ! | AATGTAGGGATCAGGCTTTT+TGG | - | chr8.2:22644965-22644984 | MS.gene61287:intron | 40.0% |
| ! | ATGCTCATTGTAGGCTTTAG+GGG | + | chr8.2:22644218-22644237 | None:intergenic | 40.0% |
| ! | ATGTAGGGATCAGGCTTTTT+GGG | - | chr8.2:22644966-22644985 | MS.gene61287:intron | 40.0% |
| ! | CAATTTCAAGTGCCTTGGAA+TGG | + | chr8.2:22644865-22644884 | None:intergenic | 40.0% |
| ! | TGTACCCACTATTGCTGTTA+TGG | - | chr8.2:22643656-22643675 | MS.gene61287:intron | 40.0% |
| ! | TGTTTCTTTTTGTGGGGAAG+GGG | - | chr8.2:22643498-22643517 | MS.gene61287:intron | 40.0% |
| ! | TTCCACATTGACATTTCTGG+AGG | - | chr8.2:22643341-22643360 | MS.gene61287:CDS | 40.0% |
| !! | ACTATGCTGGTTTCAAAGCT+CGG | + | chr8.2:22643607-22643626 | None:intergenic | 40.0% |
| !! | GTGTCGACTGTCAACAAAAT+GGG | + | chr8.2:22643585-22643604 | None:intergenic | 40.0% |
| !!! | GGGTTTCGAAGTTTTGAAGT+AGG | + | chr8.2:22642635-22642654 | None:intergenic | 40.0% |
| AACACAGCGACTACCTAGAT+TGG | - | chr8.2:22644346-22644365 | MS.gene61287:intron | 45.0% | |
| AAGAGCTATTAACGAGGGAG+TGG | - | chr8.2:22645486-22645505 | MS.gene61287:CDS | 45.0% | |
| AAGTGAACCCTCCAAGACAA+TGG | + | chr8.2:22644593-22644612 | None:intergenic | 45.0% | |
| ATTGTCTTGGAGGGTTCACT+TGG | - | chr8.2:22644592-22644611 | MS.gene61287:intron | 45.0% | |
| CGTAGGAGCAAATGCTTTGA+TGG | - | chr8.2:22643857-22643876 | MS.gene61287:CDS | 45.0% | |
| GGGAAAAGCAGAGAGATGAT+TGG | + | chr8.2:22644762-22644781 | None:intergenic | 45.0% | |
| GTCAAGCTTCACAATCTCAC+TGG | - | chr8.2:22642712-22642731 | MS.gene61287:CDS | 45.0% | |
| GTCATCTCATGTTGAACTCC+AGG | - | chr8.2:22644640-22644659 | MS.gene61287:intron | 45.0% | |
| GTTATGGAAGGAGTAGCTCT+TGG | - | chr8.2:22643672-22643691 | MS.gene61287:intron | 45.0% | |
| TAAGCATCATCGCCGTTAGT+CGG | + | chr8.2:22644783-22644802 | None:intergenic | 45.0% | |
| TAGCCATCCTTACTGCTACA+GGG | + | chr8.2:22645465-22645484 | None:intergenic | 45.0% | |
| TTAGCCATCCTTACTGCTAC+AGG | + | chr8.2:22645466-22645485 | None:intergenic | 45.0% | |
| TTATCTGATCACAGGAACGC+AGG | - | chr8.2:22643274-22643293 | MS.gene61287:intron | 45.0% | |
| TTGCTGAAAAGCGGAAACCA+AGG | - | chr8.2:22645599-22645618 | MS.gene61287:CDS | 45.0% | |
| ! | CAAGGCACTTGAAATTGCTC+GGG | - | chr8.2:22644868-22644887 | MS.gene61287:CDS | 45.0% |
| ! | CCAAGGCACTTGAAATTGCT+CGG | - | chr8.2:22644867-22644886 | MS.gene61287:CDS | 45.0% |
| ! | CCCACTATTGCTGTTATGGA+AGG | - | chr8.2:22643660-22643679 | MS.gene61287:intron | 45.0% |
| ! | GTCAATTACTGTGTTGCTGC+TGG | - | chr8.2:22644833-22644852 | MS.gene61287:intron | 45.0% |
| ! | TGGCTGCATTTGCTGAAAAG+CGG | - | chr8.2:22645590-22645609 | MS.gene61287:CDS | 45.0% |
| ! | TTGATCCGCAGTTTAGTTCC+CGG | - | chr8.2:22643037-22643056 | MS.gene61287:intron | 45.0% |
| !! | AATCTCACTGGCTCAGATTC+CGG | - | chr8.2:22642724-22642743 | MS.gene61287:CDS | 45.0% |
| !! | ACAGGACTTGCTATAATCCC+TGG | - | chr8.2:22643891-22643910 | MS.gene61287:intron | 45.0% |
| !! | ATGGGTTTGGTGCTGATGAT+AGG | + | chr8.2:22642656-22642675 | None:intergenic | 45.0% |
| !! | CAGGACTTGCTATAATCCCT+GGG | - | chr8.2:22643892-22643911 | MS.gene61287:intron | 45.0% |
| !! | GGTGTCGACTGTCAACAAAA+TGG | + | chr8.2:22643586-22643605 | None:intergenic | 45.0% |
| !! | TCTCTGCTTTTCCCGACTAA+CGG | - | chr8.2:22644768-22644787 | MS.gene61287:intron | 45.0% |
| !! | TCTTGGTGGTGGACTTGAAA+TGG | - | chr8.2:22643689-22643708 | MS.gene61287:intron | 45.0% |
| !! | TGGGTTTGGTGCTGATGATA+GGG | + | chr8.2:22642655-22642674 | None:intergenic | 45.0% |
| !! | TGGTGGACTTGAAATGGCTT+TGG | - | chr8.2:22643695-22643714 | MS.gene61287:intron | 45.0% |
| !!! | TATTTTTTTATTTTTTATTC+AGG | - | chr8.2:22643626-22643645 | MS.gene61287:intron | 5.0% |
| AAGCATCATCGCCGTTAGTC+GGG | + | chr8.2:22644782-22644801 | None:intergenic | 50.0% | |
| AAGCGGAAACCAAGGTACAC+TGG | - | chr8.2:22645607-22645626 | MS.gene61287:CDS | 50.0% | |
| AATAGGGCCCTGTAGCAGTA+AGG | - | chr8.2:22645455-22645474 | MS.gene61287:intron | 50.0% | |
| AATCTTGTCATGCACAGGGC+AGG | - | chr8.2:22644320-22644339 | MS.gene61287:CDS | 50.0% | |
| ATACCCCGGGAACTAAACTG+CGG | + | chr8.2:22643045-22643064 | None:intergenic | 50.0% | |
| ATAGGGAAAGAGATGCTGCG+TGG | - | chr8.2:22642962-22642981 | MS.gene61287:intron | 50.0% | |
| ATGGAAGGAGTAGCTCTTGG+TGG | - | chr8.2:22643675-22643694 | MS.gene61287:intron | 50.0% | |
| CAAAGATCGACTGGAAGGCT+TGG | - | chr8.2:22645570-22645589 | MS.gene61287:CDS | 50.0% | |
| CAAGCCTTCCAGTCGATCTT+TGG | + | chr8.2:22645572-22645591 | None:intergenic | 50.0% | |
| CAGCGACTACCTAGATTGGT+AGG | - | chr8.2:22644350-22644369 | MS.gene61287:intron | 50.0% | |
| CTTAGCCTCGGATTGATCCA+TGG | + | chr8.2:22643301-22643320 | None:intergenic | 50.0% | |
| TCAATTGGCGCAATTGACCC+TGG | - | chr8.2:22645157-22645176 | MS.gene61287:CDS | 50.0% | |
| TTGTGCTGGGGCTGATCTAA+AGG | - | chr8.2:22643066-22643085 | MS.gene61287:intron | 50.0% | |
| ! | CCGAGCAATTTCAAGTGCCT+TGG | + | chr8.2:22644870-22644889 | None:intergenic | 50.0% |
| ! | GGCATTGAGGCGCTATCAAT+GGG | - | chr8.2:22644419-22644438 | MS.gene61287:intron | 50.0% |
| ! | TCTTTTTGTGGGGAAGGGGT+TGG | - | chr8.2:22643502-22643521 | MS.gene61287:intron | 50.0% |
| ! | TGATCCGCAGTTTAGTTCCC+GGG | - | chr8.2:22643038-22643057 | MS.gene61287:intron | 50.0% |
| ! | TGGCATTGAGGCGCTATCAA+TGG | - | chr8.2:22644418-22644437 | MS.gene61287:intron | 50.0% |
| !! | TTCCCGGGGTATTTTGTGCT+GGG | - | chr8.2:22643053-22643072 | MS.gene61287:intron | 50.0% |
| !! | TTGATGGGTTTGCCAGAGAC+AGG | - | chr8.2:22643873-22643892 | MS.gene61287:intron | 50.0% |
| AGCCCCAGCACAAAATACCC+CGG | + | chr8.2:22643059-22643078 | None:intergenic | 55.0% | |
| AGCTGAACGAAAGAGACGCG+TGG | + | chr8.2:22643960-22643979 | None:intergenic | 55.0% | |
| ATCACAGGAACGCAGGACCA+TGG | - | chr8.2:22643281-22643300 | MS.gene61287:intron | 55.0% | |
| CAGGACCATGGATCAATCCG+AGG | - | chr8.2:22643293-22643312 | MS.gene61287:intron | 55.0% | |
| GAAGGAGTAGCTCTTGGTGG+TGG | - | chr8.2:22643678-22643697 | MS.gene61287:intron | 55.0% | |
| TGCTGGTGAAGCCCATTCCA+AGG | - | chr8.2:22644850-22644869 | MS.gene61287:intron | 55.0% | |
| ! | GATCCGCAGTTTAGTTCCCG+GGG | - | chr8.2:22643039-22643058 | MS.gene61287:intron | 55.0% |
| !! | GTTCCCGGGGTATTTTGTGC+TGG | - | chr8.2:22643052-22643071 | MS.gene61287:intron | 55.0% |
| !! | TCCCGGGGTATTTTGTGCTG+GGG | - | chr8.2:22643054-22643073 | MS.gene61287:intron | 55.0% |
| CTTGTCATGCACAGGGCAGG+TGG | - | chr8.2:22644323-22644342 | MS.gene61287:CDS | 60.0% | |
| GCCCCAGCACAAAATACCCC+GGG | + | chr8.2:22643058-22643077 | None:intergenic | 60.0% | |
| GGGCCCTGTAGCAGTAAGGA+TGG | - | chr8.2:22645459-22645478 | MS.gene61287:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 22642589 | 22645636 | 22642589 | ID=MS.gene61287 |
| chr8.2 | mRNA | 22642589 | 22645636 | 22642589 | ID=MS.gene61287.t1;Parent=MS.gene61287 |
| chr8.2 | exon | 22645480 | 22645636 | 22645480 | ID=MS.gene61287.t1.exon1;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22645480 | 22645636 | 22645480 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22645138 | 22645307 | 22645138 | ID=MS.gene61287.t1.exon2;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22645138 | 22645307 | 22645138 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22644863 | 22644937 | 22644863 | ID=MS.gene61287.t1.exon3;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22644863 | 22644937 | 22644863 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22644487 | 22644577 | 22644487 | ID=MS.gene61287.t1.exon4;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22644487 | 22644577 | 22644487 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22644312 | 22644363 | 22644312 | ID=MS.gene61287.t1.exon5;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22644312 | 22644363 | 22644312 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22643785 | 22643888 | 22643785 | ID=MS.gene61287.t1.exon6;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22643785 | 22643888 | 22643785 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22643321 | 22643397 | 22643321 | ID=MS.gene61287.t1.exon7;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22643321 | 22643397 | 22643321 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| chr8.2 | exon | 22642589 | 22642765 | 22642589 | ID=MS.gene61287.t1.exon8;Parent=MS.gene61287.t1 |
| chr8.2 | CDS | 22642589 | 22642765 | 22642589 | ID=cds.MS.gene61287.t1;Parent=MS.gene61287.t1 |
| Gene Sequence |
| Protein sequence |
