Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61330.t1 | XP_003620624.1 | 97.1 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 6.50E-164 | 586.6 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61330.t1 | G7KPF3 | 97.1 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 4.7e-164 | 586.6 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene056366 | MS.gene61330 | 0.807287 | 5.44E-50 | -1.69E-46 |
| MS.gene060352 | MS.gene61330 | 0.814859 | 1.24E-51 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61330.t1 | MTR_6g087880 | 97.068 | 307 | 9 | 0 | 1 | 307 | 1 | 307 | 0.0 | 617 |
| MS.gene61330.t1 | MTR_2g101870 | 53.994 | 313 | 132 | 7 | 1 | 306 | 2 | 309 | 1.17e-111 | 326 |
| MS.gene61330.t1 | MTR_6g081930 | 38.854 | 314 | 164 | 6 | 1 | 306 | 1 | 294 | 1.28e-59 | 192 |
| MS.gene61330.t1 | MTR_8g106580 | 41.801 | 311 | 161 | 8 | 1 | 306 | 1 | 296 | 5.72e-55 | 181 |
| MS.gene61330.t1 | MTR_4g075730 | 37.580 | 314 | 161 | 11 | 1 | 294 | 6 | 304 | 3.41e-48 | 164 |
| MS.gene61330.t1 | MTR_8g086610 | 33.758 | 157 | 98 | 2 | 135 | 287 | 106 | 260 | 7.06e-30 | 114 |
| MS.gene61330.t1 | MTR_0154s0010 | 39.855 | 138 | 77 | 4 | 174 | 307 | 1 | 136 | 5.71e-28 | 105 |
| MS.gene61330.t1 | MTR_4g075730 | 38.261 | 230 | 113 | 9 | 1 | 214 | 6 | 222 | 2.34e-27 | 107 |
| MS.gene61330.t1 | MTR_3g037650 | 32.389 | 247 | 144 | 8 | 50 | 289 | 25 | 255 | 8.60e-26 | 103 |
| MS.gene61330.t1 | MTR_3g033530 | 27.885 | 312 | 178 | 11 | 25 | 294 | 29 | 335 | 7.29e-21 | 91.7 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61330.t1 | AT3G24605 | 42.258 | 310 | 156 | 7 | 1 | 303 | 3 | 296 | 1.58e-71 | 223 |
| MS.gene61330.t1 | AT1G45688 | 38.776 | 343 | 161 | 9 | 1 | 301 | 1 | 336 | 6.77e-60 | 195 |
| MS.gene61330.t1 | AT5G42860 | 38.019 | 313 | 152 | 7 | 1 | 286 | 1 | 298 | 2.67e-58 | 190 |
| MS.gene61330.t1 | AT3G24600 | 39.414 | 307 | 177 | 6 | 1 | 304 | 2 | 302 | 3.40e-51 | 171 |
| MS.gene61330.t1 | AT1G45688 | 40.000 | 245 | 118 | 8 | 1 | 223 | 1 | 238 | 6.40e-41 | 143 |
| MS.gene61330.t1 | AT4G35170 | 32.632 | 285 | 168 | 8 | 15 | 287 | 8 | 280 | 1.09e-39 | 141 |
| MS.gene61330.t1 | AT2G41990 | 33.882 | 304 | 163 | 8 | 1 | 289 | 1 | 281 | 1.21e-39 | 141 |
| MS.gene61330.t1 | AT3G08490 | 24.883 | 213 | 152 | 5 | 99 | 304 | 57 | 268 | 1.20e-14 | 73.2 |
Find 59 sgRNAs with CRISPR-Local
Find 144 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAGGACTTTGAACGTAATA+AGG | 0.197913 | 6.3:-81143746 | None:intergenic |
| TGCTGTTTGTGGGTTTGTTT+TGG | 0.310858 | 6.3:+81144042 | MS.gene61330:CDS |
| AATAGAAAAGTGAATGATAA+AGG | 0.318907 | 6.3:+81143923 | MS.gene61330:CDS |
| TCACCTTCACATCAATCTTA+TGG | 0.323598 | 6.3:+81143827 | MS.gene61330:CDS |
| CATAACCCTGCAACTTTCTT+CGG | 0.342827 | 6.3:+81145515 | MS.gene61330:CDS |
| TAAAGGGTGGATTGGATCTA+AGG | 0.346851 | 6.3:+81143940 | MS.gene61330:CDS |
| ACAGTACATAACTTCTACTT+TGG | 0.351398 | 6.3:+81145422 | MS.gene61330:CDS |
| AAGGACTTTGAACGTAATAA+GGG | 0.376152 | 6.3:-81143745 | None:intergenic |
| GAAGAAGAAAATGGCGGTTA+TGG | 0.397587 | 6.3:+81143968 | MS.gene61330:CDS |
| TTCTTCTTCTAGTAGAATCT+CGG | 0.404649 | 6.3:+81143865 | MS.gene61330:CDS |
| TTTGATGTACTTGTTGTTGT+GGG | 0.406752 | 6.3:-81146505 | None:intergenic |
| TAAATGCCGAAGAAAGTTGC+AGG | 0.435222 | 6.3:-81145521 | None:intergenic |
| GTGAATGATAAAGGGTGGAT+TGG | 0.450115 | 6.3:+81143932 | MS.gene61330:CDS |
| TCATGAGAGGATTCTCTTGA+AGG | 0.457289 | 6.3:-81143764 | None:intergenic |
| TTCACTGTAAGCATCTTAGT+TGG | 0.459875 | 6.3:-81145470 | None:intergenic |
| GTTTGATGTACTTGTTGTTG+TGG | 0.464472 | 6.3:-81146506 | None:intergenic |
| GGAAGCAAGGTTCCATTGTA+TGG | 0.470323 | 6.3:+81146336 | MS.gene61330:CDS |
| TGGTGCAGATGTTGCTAGCT+CGG | 0.471095 | 6.3:+81146362 | MS.gene61330:CDS |
| AAGTCGCGCGGAAATGTTGT+AGG | 0.496383 | 6.3:+81146426 | MS.gene61330:CDS |
| AAGGTGATTGAAGAAGAAAA+TGG | 0.498075 | 6.3:+81143959 | MS.gene61330:CDS |
| GTATATTGACAGACACTGTT+CGG | 0.499883 | 6.3:-81146311 | None:intergenic |
| TTTGTGATCTTGGTGATGAT+GGG | 0.501451 | 6.3:-81143715 | None:intergenic |
| CATAACTTCTACTTTGGAGA+AGG | 0.514215 | 6.3:+81145428 | MS.gene61330:CDS |
| TAGAAGAAGAAGCTCTTGAA+TGG | 0.526972 | 6.3:-81143853 | None:intergenic |
| ATAGAAAAGTGAATGATAAA+GGG | 0.527874 | 6.3:+81143924 | MS.gene61330:CDS |
| CGGAAATGTTGTAGGCAAGT+TGG | 0.532289 | 6.3:+81146434 | MS.gene61330:CDS |
| AAGGTTCCATTGTATGGCGC+TGG | 0.535461 | 6.3:+81146342 | MS.gene61330:CDS |
| GGAGAAGGGTCAGATGTCAC+TGG | 0.551406 | 6.3:+81145443 | MS.gene61330:CDS |
| TCTTCTTCTAGTAGAATCTC+GGG | 0.552347 | 6.3:+81143866 | MS.gene61330:CDS |
| GAAAAGTGAATGATAAAGGG+TGG | 0.557185 | 6.3:+81143927 | MS.gene61330:CDS |
| AACAATGCAACCAAGTCCAA+TGG | 0.570691 | 6.3:+81143802 | MS.gene61330:CDS |
| TGATGTACTTGTTGTTGTGG+GGG | 0.577495 | 6.3:-81146503 | None:intergenic |
| TCAAGAGAATCCTCTCATGA+TGG | 0.579483 | 6.3:+81143767 | MS.gene61330:CDS |
| ATACATAAGATTCACTGACT+TGG | 0.579991 | 6.3:-81145552 | None:intergenic |
| TTGATGTACTTGTTGTTGTG+GGG | 0.580202 | 6.3:-81146504 | None:intergenic |
| TGATGTGAAGGTGAATCCAT+TGG | 0.581487 | 6.3:-81143818 | None:intergenic |
| GAAGGTGAATCCATTGGACT+TGG | 0.584702 | 6.3:-81143812 | None:intergenic |
| GTGATCGAAATGGAGTTTCG+AGG | 0.592967 | 6.3:+81144002 | MS.gene61330:CDS |
| TCTGATCTTACAGTTGCGAC+CGG | 0.593421 | 6.3:+81145575 | MS.gene61330:CDS |
| AGATTTATCACCATCATGAG+AGG | 0.599209 | 6.3:-81143777 | None:intergenic |
| GTCTTTGAAGTTAAGTCGCG+CGG | 0.601720 | 6.3:+81146414 | MS.gene61330:CDS |
| TGTCAATATACAAGGAAGCA+AGG | 0.603269 | 6.3:+81146323 | MS.gene61330:CDS |
| ACAGTGTCTGTCAATATACA+AGG | 0.604063 | 6.3:+81146315 | MS.gene61330:CDS |
| ATAACTTCTACTTTGGAGAA+GGG | 0.607546 | 6.3:+81145429 | MS.gene61330:CDS |
| TCTGCACCAGCGCCATACAA+TGG | 0.611769 | 6.3:-81146348 | None:intergenic |
| TCGAAATGGAGTTTCGAGGA+GGG | 0.621143 | 6.3:+81144006 | MS.gene61330:CDS |
| ATGTTGTAGGCAAGTTGGTG+AGG | 0.621904 | 6.3:+81146439 | MS.gene61330:CDS |
| CAAACCTCAGCTCAGTGTCA+AGG | 0.632858 | 6.3:+81144111 | MS.gene61330:CDS |
| AGGACTTTGAACGTAATAAG+GGG | 0.639543 | 6.3:-81143744 | None:intergenic |
| TATACCTTGACACTGAGCTG+AGG | 0.640482 | 6.3:-81144115 | None:intergenic |
| TGACCATAAGATTGATGTGA+AGG | 0.643898 | 6.3:-81143830 | None:intergenic |
| TGTTAGAATACTTACCTCGC+CGG | 0.646947 | 6.3:-81145594 | None:intergenic |
| ATCGAAATGGAGTTTCGAGG+AGG | 0.650916 | 6.3:+81144005 | MS.gene61330:CDS |
| TATTGACAGACACTGTTCGG+CGG | 0.651348 | 6.3:-81146308 | None:intergenic |
| TCTTACAGTTGCGACCGGCG+AGG | 0.653403 | 6.3:+81145580 | MS.gene61330:CDS |
| GTGATTGAAGAAGAAAATGG+CGG | 0.664118 | 6.3:+81143962 | MS.gene61330:CDS |
| TCTTCTAGTAGAATCTCGGG+TGG | 0.681052 | 6.3:+81143869 | MS.gene61330:CDS |
| AAATGCCGAAGAAAGTTGCA+GGG | 0.681577 | 6.3:-81145520 | None:intergenic |
| GTTGCTAGCTCGGTGAACAA+CGG | 0.683429 | 6.3:+81146372 | MS.gene61330:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TAATTGTTTTTTTTAATCAA+AGG | + | chr6.3:81144496-81144515 | MS.gene61330:intron | 10.0% |
| !! | AAATGAAATTTCAAAAAAGT+TGG | - | chr6.3:81145042-81145061 | None:intergenic | 15.0% |
| !! | AATGAAATTTCAAAAAAGTT+GGG | - | chr6.3:81145041-81145060 | None:intergenic | 15.0% |
| !!! | GTTTTTTTATTATAGTTAGA+AGG | + | chr6.3:81144533-81144552 | MS.gene61330:intron | 15.0% |
| !! | AATAGAAAAGTGAATGATAA+AGG | + | chr6.3:81143923-81143942 | MS.gene61330:CDS | 20.0% |
| !! | ATAGAAAAGTGAATGATAAA+GGG | + | chr6.3:81143924-81143943 | MS.gene61330:CDS | 20.0% |
| !! | TGATAAACTTATAGATGTTT+AGG | - | chr6.3:81146082-81146101 | None:intergenic | 20.0% |
| !!! | CTTTTTTTTCAAAATCAATG+TGG | - | chr6.3:81144815-81144834 | None:intergenic | 20.0% |
| !!! | TCACAATTGTGTTTTAATTA+AGG | + | chr6.3:81144165-81144184 | MS.gene61330:intron | 20.0% |
| !!! | TTGATAGTTAAATTCATACT+AGG | + | chr6.3:81144669-81144688 | MS.gene61330:intron | 20.0% |
| !!! | TTTGTTTTGTTTGATCATTT+GGG | + | chr6.3:81144072-81144091 | MS.gene61330:CDS | 20.0% |
| !!! | TTTTAAAAAAATTGAGACAC+AGG | - | chr6.3:81146043-81146062 | None:intergenic | 20.0% |
| ! | ATTCATACTAGGAGATATTA+TGG | + | chr6.3:81144680-81144699 | MS.gene61330:intron | 25.0% |
| ! | CAGGAAAATATATGATCATT+TGG | + | chr6.3:81144618-81144637 | MS.gene61330:intron | 25.0% |
| ! | TTGAAAAAAAAGTTGCACTT+TGG | + | chr6.3:81144823-81144842 | MS.gene61330:intron | 25.0% |
| !!! | GGTTATAATAGCTCTTTTTT+GGG | + | chr6.3:81143890-81143909 | MS.gene61330:CDS | 25.0% |
| !!! | GTTTGTTTTGTTTGATCATT+TGG | + | chr6.3:81144071-81144090 | MS.gene61330:CDS | 25.0% |
| !!! | TGGTTATAATAGCTCTTTTT+TGG | + | chr6.3:81143889-81143908 | MS.gene61330:CDS | 25.0% |
| AAATAAGATATAAGCTGTCC+TGG | - | chr6.3:81145772-81145791 | None:intergenic | 30.0% | |
| AAATTTCAAAAAAGTTGGGC+AGG | - | chr6.3:81145037-81145056 | None:intergenic | 30.0% | |
| AAGGACTTTGAACGTAATAA+GGG | - | chr6.3:81143748-81143767 | None:intergenic | 30.0% | |
| AAGGTGATTGAAGAAGAAAA+TGG | + | chr6.3:81143959-81143978 | MS.gene61330:CDS | 30.0% | |
| AAGTACTTGAGAAACTGTTT+GGG | + | chr6.3:81145724-81145743 | MS.gene61330:intron | 30.0% | |
| ACAGTACATAACTTCTACTT+TGG | + | chr6.3:81145422-81145441 | MS.gene61330:CDS | 30.0% | |
| AGTTTCTCAAGTACTTATGT+CGG | - | chr6.3:81145720-81145739 | None:intergenic | 30.0% | |
| ATACCAAAAGTCTACCATTT+AGG | - | chr6.3:81144451-81144470 | None:intergenic | 30.0% | |
| ATGGAATTTGACAGTAAGAA+TGG | - | chr6.3:81146249-81146268 | None:intergenic | 30.0% | |
| CATAGTTTATCACAGAACAA+TGG | + | chr6.3:81145205-81145224 | MS.gene61330:intron | 30.0% | |
| CTTGCAAAGCTTATAGAAAT+AGG | + | chr6.3:81144317-81144336 | MS.gene61330:intron | 30.0% | |
| GATATTATGGTTCAGCAAAA+TGG | + | chr6.3:81144693-81144712 | MS.gene61330:intron | 30.0% | |
| GTCAAAAGTGAGTTCAAAAT+TGG | + | chr6.3:81146159-81146178 | MS.gene61330:intron | 30.0% | |
| GTTTCTAAATCAACAAGTAC+TGG | - | chr6.3:81145624-81145643 | None:intergenic | 30.0% | |
| TAAGTACTTGAGAAACTGTT+TGG | + | chr6.3:81145723-81145742 | MS.gene61330:intron | 30.0% | |
| TAGCTACTAGTTAACAAAAC+TGG | + | chr6.3:81145265-81145284 | MS.gene61330:intron | 30.0% | |
| TATCTATGTTATGTGAACAG+TGG | + | chr6.3:81145290-81145309 | MS.gene61330:intron | 30.0% | |
| TTCTTCTTCTAGTAGAATCT+CGG | + | chr6.3:81143865-81143884 | MS.gene61330:CDS | 30.0% | |
| TTGTTAACTAGTAGCTATAG+TGG | - | chr6.3:81145262-81145281 | None:intergenic | 30.0% | |
| ! | ATAACTTCTACTTTGGAGAA+GGG | + | chr6.3:81145429-81145448 | MS.gene61330:CDS | 30.0% |
| ! | ATACATAAGATTCACTGACT+TGG | - | chr6.3:81145555-81145574 | None:intergenic | 30.0% |
| !! | TTTGATGTACTTGTTGTTGT+GGG | - | chr6.3:81146508-81146527 | None:intergenic | 30.0% |
| !!! | AAGCACTTTTAAGACTGTTT+GGG | - | chr6.3:81144389-81144408 | None:intergenic | 30.0% |
| !!! | AGTTTTTCATTGCTGTTTGT+GGG | + | chr6.3:81144032-81144051 | MS.gene61330:CDS | 30.0% |
| !!! | TAAGCACTTTTAAGACTGTT+TGG | - | chr6.3:81144390-81144409 | None:intergenic | 30.0% |
| !!! | TGAACTCACTTTTGACTTAT+GGG | - | chr6.3:81146155-81146174 | None:intergenic | 30.0% |
| !!! | TTGAACTCACTTTTGACTTA+TGG | - | chr6.3:81146156-81146175 | None:intergenic | 30.0% |
| AAATAAAGTACACGAGGCAA+AGG | - | chr6.3:81144925-81144944 | None:intergenic | 35.0% | |
| AATAGGCTGAAAACAGCTTA+TGG | + | chr6.3:81144334-81144353 | MS.gene61330:intron | 35.0% | |
| ACAGTGTCTGTCAATATACA+AGG | + | chr6.3:81146315-81146334 | MS.gene61330:CDS | 35.0% | |
| AGATTTATCACCATCATGAG+AGG | - | chr6.3:81143780-81143799 | None:intergenic | 35.0% | |
| AGGACTTTGAACGTAATAAG+GGG | - | chr6.3:81143747-81143766 | None:intergenic | 35.0% | |
| AGTACCAAATAAAGTACACG+AGG | - | chr6.3:81144931-81144950 | None:intergenic | 35.0% | |
| ATTAAGCTGTTCATCCAAAC+AGG | + | chr6.3:81145882-81145901 | MS.gene61330:intron | 35.0% | |
| GAAAAGTGAATGATAAAGGG+TGG | + | chr6.3:81143927-81143946 | MS.gene61330:CDS | 35.0% | |
| GAAGGACTTTGAACGTAATA+AGG | - | chr6.3:81143749-81143768 | None:intergenic | 35.0% | |
| GGCAAGATTGTAACATAACA+AGG | - | chr6.3:81145096-81145115 | None:intergenic | 35.0% | |
| GTATATTGACAGACACTGTT+CGG | - | chr6.3:81146314-81146333 | None:intergenic | 35.0% | |
| GTGATTGAAGAAGAAAATGG+CGG | + | chr6.3:81143962-81143981 | MS.gene61330:CDS | 35.0% | |
| TAGAAGAAGAAGCTCTTGAA+TGG | - | chr6.3:81143856-81143875 | None:intergenic | 35.0% | |
| TCAATCCATACAGTCCTAAA+TGG | + | chr6.3:81144434-81144453 | MS.gene61330:intron | 35.0% | |
| TCACCTTCACATCAATCTTA+TGG | + | chr6.3:81143827-81143846 | MS.gene61330:CDS | 35.0% | |
| TCTTCTTCTAGTAGAATCTC+GGG | + | chr6.3:81143866-81143885 | MS.gene61330:CDS | 35.0% | |
| TGACCATAAGATTGATGTGA+AGG | - | chr6.3:81143833-81143852 | None:intergenic | 35.0% | |
| TGTCAATATACAAGGAAGCA+AGG | + | chr6.3:81146323-81146342 | MS.gene61330:CDS | 35.0% | |
| TGTTACAATCTTGCCAATCA+CGG | + | chr6.3:81145101-81145120 | MS.gene61330:intron | 35.0% | |
| TTCACTGTAAGCATCTTAGT+TGG | - | chr6.3:81145473-81145492 | None:intergenic | 35.0% | |
| TTTGCCTCGTGTACTTTATT+TGG | + | chr6.3:81144924-81144943 | MS.gene61330:intron | 35.0% | |
| ! | AGTCCTAAATGGTAGACTTT+TGG | + | chr6.3:81144445-81144464 | MS.gene61330:intron | 35.0% |
| ! | CATAACTTCTACTTTGGAGA+AGG | + | chr6.3:81145428-81145447 | MS.gene61330:CDS | 35.0% |
| !! | AAAAAAGTTCTAGGCCTGTT+TGG | - | chr6.3:81145899-81145918 | None:intergenic | 35.0% |
| !! | AGTTCAAAATTGGCCTTTGA+AGG | + | chr6.3:81146169-81146188 | MS.gene61330:intron | 35.0% |
| !! | GATTTTGATCGTGATCGAAA+TGG | + | chr6.3:81143992-81144011 | MS.gene61330:CDS | 35.0% |
| !! | GTTTGATGTACTTGTTGTTG+TGG | - | chr6.3:81146509-81146528 | None:intergenic | 35.0% |
| !! | TTGATGTACTTGTTGTTGTG+GGG | - | chr6.3:81146507-81146526 | None:intergenic | 35.0% |
| !! | TTTGTGATCTTGGTGATGAT+GGG | - | chr6.3:81143718-81143737 | None:intergenic | 35.0% |
| !!! | CAGTTTTTCATTGCTGTTTG+TGG | + | chr6.3:81144031-81144050 | MS.gene61330:CDS | 35.0% |
| !!! | GTTTTAATTAAGGCTCTGCT+TGG | + | chr6.3:81144175-81144194 | MS.gene61330:intron | 35.0% |
| !!! | TTTTGTGATCTTGGTGATGA+TGG | - | chr6.3:81143719-81143738 | None:intergenic | 35.0% |
| AAATGCCGAAGAAAGTTGCA+GGG | - | chr6.3:81145523-81145542 | None:intergenic | 40.0% | |
| AACAATGCAACCAAGTCCAA+TGG | + | chr6.3:81143802-81143821 | MS.gene61330:CDS | 40.0% | |
| AGACTGTTTGGGAAAGCTTA+TGG | - | chr6.3:81144378-81144397 | None:intergenic | 40.0% | |
| ATGCCAAATCCAAGACAAGA+GGG | - | chr6.3:81144587-81144606 | None:intergenic | 40.0% | |
| CATAACCCTGCAACTTTCTT+CGG | + | chr6.3:81145515-81145534 | MS.gene61330:CDS | 40.0% | |
| CATTTAAGCCACTCCTTCAA+AGG | - | chr6.3:81146185-81146204 | None:intergenic | 40.0% | |
| CTGTCCGTCAAAAAAGTTCT+AGG | - | chr6.3:81145908-81145927 | None:intergenic | 40.0% | |
| GAAGAAGAAAATGGCGGTTA+TGG | + | chr6.3:81143968-81143987 | MS.gene61330:CDS | 40.0% | |
| GTGAATGATAAAGGGTGGAT+TGG | + | chr6.3:81143932-81143951 | MS.gene61330:CDS | 40.0% | |
| GTTACAATCTTGCCAATCAC+GGG | + | chr6.3:81145102-81145121 | MS.gene61330:intron | 40.0% | |
| GTTCTGTTCAAGTGCATACA+TGG | + | chr6.3:81144757-81144776 | MS.gene61330:intron | 40.0% | |
| GTTTGGATTGACTGAGAGTT+GGG | - | chr6.3:81144884-81144903 | None:intergenic | 40.0% | |
| TAAATGCCGAAGAAAGTTGC+AGG | - | chr6.3:81145524-81145543 | None:intergenic | 40.0% | |
| TCAAGAGAATCCTCTCATGA+TGG | + | chr6.3:81143767-81143786 | MS.gene61330:CDS | 40.0% | |
| TCATGAGAGGATTCTCTTGA+AGG | - | chr6.3:81143767-81143786 | None:intergenic | 40.0% | |
| TGATGTGAAGGTGAATCCAT+TGG | - | chr6.3:81143821-81143840 | None:intergenic | 40.0% | |
| TGTTAGAATACTTACCTCGC+CGG | - | chr6.3:81145597-81145616 | None:intergenic | 40.0% | |
| TGTTTGGATTGACTGAGAGT+TGG | - | chr6.3:81144885-81144904 | None:intergenic | 40.0% | |
| TTGCATAACCTGCTTCATGA+GGG | + | chr6.3:81144990-81145009 | MS.gene61330:intron | 40.0% | |
| TTTCTTCAACTGCAGCAACA+TGG | - | chr6.3:81146268-81146287 | None:intergenic | 40.0% | |
| TTTGCATAACCTGCTTCATG+AGG | + | chr6.3:81144989-81145008 | MS.gene61330:intron | 40.0% | |
| ! | ACATGGATTGACGGTGAATT+TGG | + | chr6.3:81144774-81144793 | MS.gene61330:intron | 40.0% |
| ! | CAAGTGCATACATGGATTGA+CGG | + | chr6.3:81144765-81144784 | MS.gene61330:intron | 40.0% |
| ! | GTCTACCATTTAGGACTGTA+TGG | - | chr6.3:81144442-81144461 | None:intergenic | 40.0% |
| ! | TTTGGCATGATGTTTGAGAC+AGG | + | chr6.3:81144599-81144618 | MS.gene61330:intron | 40.0% |
| !! | AAAATTGGCCTTTGAAGGAG+TGG | + | chr6.3:81146174-81146193 | MS.gene61330:intron | 40.0% |
| !! | TAAAGGGTGGATTGGATCTA+AGG | + | chr6.3:81143940-81143959 | MS.gene61330:CDS | 40.0% |
| !! | TGATGTACTTGTTGTTGTGG+GGG | - | chr6.3:81146506-81146525 | None:intergenic | 40.0% |
| !! | TGCTGTTTGTGGGTTTGTTT+TGG | + | chr6.3:81144042-81144061 | MS.gene61330:CDS | 40.0% |
| !!! | CAGGCCTAGAACTTTTTTGA+CGG | + | chr6.3:81145901-81145920 | MS.gene61330:intron | 40.0% |
| !!! | GGGGTTTGTTTTTGTGATCT+TGG | - | chr6.3:81143728-81143747 | None:intergenic | 40.0% |
| ATCGAAATGGAGTTTCGAGG+AGG | + | chr6.3:81144005-81144024 | MS.gene61330:CDS | 45.0% | |
| CATGCCAAATCCAAGACAAG+AGG | - | chr6.3:81144588-81144607 | None:intergenic | 45.0% | |
| CGGAAATGTTGTAGGCAAGT+TGG | + | chr6.3:81146434-81146453 | MS.gene61330:CDS | 45.0% | |
| CTTATGTCTGTAAGCTCACC+AGG | + | chr6.3:81145751-81145770 | MS.gene61330:intron | 45.0% | |
| GAAGGTGAATCCATTGGACT+TGG | - | chr6.3:81143815-81143834 | None:intergenic | 45.0% | |
| GCTAAGCACGAAAAATGGCA+GGG | - | chr6.3:81145066-81145085 | None:intergenic | 45.0% | |
| GGAAGCAAGGTTCCATTGTA+TGG | + | chr6.3:81146336-81146355 | MS.gene61330:CDS | 45.0% | |
| GTGAAGCAAGTAGCAATGCA+AGG | - | chr6.3:81144149-81144168 | None:intergenic | 45.0% | |
| GTGATCGAAATGGAGTTTCG+AGG | + | chr6.3:81144002-81144021 | MS.gene61330:CDS | 45.0% | |
| TATACCTTGACACTGAGCTG+AGG | - | chr6.3:81144118-81144137 | None:intergenic | 45.0% | |
| TATTGACAGACACTGTTCGG+CGG | - | chr6.3:81146311-81146330 | None:intergenic | 45.0% | |
| TCGAAATGGAGTTTCGAGGA+GGG | + | chr6.3:81144006-81144025 | MS.gene61330:CDS | 45.0% | |
| TCGACGCTAAGCACGAAAAA+TGG | - | chr6.3:81145071-81145090 | None:intergenic | 45.0% | |
| TCTGATCTTACAGTTGCGAC+CGG | + | chr6.3:81145575-81145594 | MS.gene61330:CDS | 45.0% | |
| TCTTCTAGTAGAATCTCGGG+TGG | + | chr6.3:81143869-81143888 | MS.gene61330:CDS | 45.0% | |
| TTAAGACAGCCCTCTTGTCT+TGG | + | chr6.3:81144575-81144594 | MS.gene61330:intron | 45.0% | |
| !! | ATGTTGTAGGCAAGTTGGTG+AGG | + | chr6.3:81146439-81146458 | MS.gene61330:CDS | 45.0% |
| !! | GTCTTTGAAGTTAAGTCGCG+CGG | + | chr6.3:81146414-81146433 | MS.gene61330:CDS | 45.0% |
| !! | TGCACTTTGGAGCTTCAAAG+AGG | + | chr6.3:81144836-81144855 | MS.gene61330:intron | 45.0% |
| !!! | CTATTTTTGCGACCCGTGAT+TGG | - | chr6.3:81145117-81145136 | None:intergenic | 45.0% |
| AAGGTTCCATTGTATGGCGC+TGG | + | chr6.3:81146342-81146361 | MS.gene61330:CDS | 50.0% | |
| AAGTCGCGCGGAAATGTTGT+AGG | + | chr6.3:81146426-81146445 | MS.gene61330:CDS | 50.0% | |
| ATACAACGCCCTCATGAAGC+AGG | - | chr6.3:81145001-81145020 | None:intergenic | 50.0% | |
| CAAACCTCAGCTCAGTGTCA+AGG | + | chr6.3:81144111-81144130 | MS.gene61330:CDS | 50.0% | |
| CAATCCAAACATGCACCGAG+TGG | + | chr6.3:81144894-81144913 | MS.gene61330:intron | 50.0% | |
| CAGCCCTCTTGTCTTGGATT+TGG | + | chr6.3:81144581-81144600 | MS.gene61330:intron | 50.0% | |
| CGCTAAGCACGAAAAATGGC+AGG | - | chr6.3:81145067-81145086 | None:intergenic | 50.0% | |
| GAGGCAAAGGATACACCACT+CGG | - | chr6.3:81144912-81144931 | None:intergenic | 50.0% | |
| TGGTGCAGATGTTGCTAGCT+CGG | + | chr6.3:81146362-81146381 | MS.gene61330:CDS | 50.0% | |
| ! | GTTGCTAGCTCGGTGAACAA+CGG | + | chr6.3:81146372-81146391 | MS.gene61330:CDS | 50.0% |
| !! | CTTGTTGTTGTGGGGGTCAA+CGG | - | chr6.3:81146499-81146518 | None:intergenic | 50.0% |
| !! | TACACCACTCGGTGCATGTT+TGG | - | chr6.3:81144901-81144920 | None:intergenic | 50.0% |
| !! | TGCTTCATGAGGGCGTTGTA+TGG | + | chr6.3:81145000-81145019 | MS.gene61330:intron | 50.0% |
| GGAGAAGGGTCAGATGTCAC+TGG | + | chr6.3:81145443-81145462 | MS.gene61330:CDS | 55.0% | |
| TCTGCACCAGCGCCATACAA+TGG | - | chr6.3:81146351-81146370 | None:intergenic | 55.0% | |
| TCTTACAGTTGCGACCGGCG+AGG | + | chr6.3:81145580-81145599 | MS.gene61330:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6.3 | gene | 81143677 | 81146560 | 81143677 | ID=MS.gene61330 |
| chr6.3 | mRNA | 81143677 | 81146560 | 81143677 | ID=MS.gene61330.t1;Parent=MS.gene61330 |
| chr6.3 | exon | 81143677 | 81144132 | 81143677 | ID=MS.gene61330.t1.exon1;Parent=MS.gene61330.t1 |
| chr6.3 | CDS | 81143677 | 81144132 | 81143677 | ID=cds.MS.gene61330.t1;Parent=MS.gene61330.t1 |
| chr6.3 | exon | 81145416 | 81145601 | 81145416 | ID=MS.gene61330.t1.exon2;Parent=MS.gene61330.t1 |
| chr6.3 | CDS | 81145416 | 81145601 | 81145416 | ID=cds.MS.gene61330.t1;Parent=MS.gene61330.t1 |
| chr6.3 | exon | 81146279 | 81146560 | 81146279 | ID=MS.gene61330.t1.exon3;Parent=MS.gene61330.t1 |
| chr6.3 | CDS | 81146279 | 81146560 | 81146279 | ID=cds.MS.gene61330.t1;Parent=MS.gene61330.t1 |
| Gene Sequence |
| Protein sequence |
