Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61505.t1 | XP_003609298.1 | 96.9 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 4.70E-157 | 563.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61505.t1 | G7JCY4 | 96.9 | 322 | 10 | 0 | 1 | 322 | 1 | 322 | 3.4e-157 | 563.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene05978 | MS.gene61505 | 0.80858 | 2.89E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61505.t1 | MTR_4g114160 | 97.205 | 322 | 9 | 0 | 1 | 322 | 1 | 322 | 0.0 | 646 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61505.t1 | AT2G26680 | 68.308 | 325 | 93 | 3 | 1 | 321 | 1 | 319 | 3.80e-159 | 447 |
Find 89 sgRNAs with CRISPR-Local
Find 215 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTTCTCGCTTTCTGATTT+CGG | 0.184156 | 8.3:-13159337 | MS.gene61505:CDS |
| GGTTATGGGGTTTCGGGTTT+TGG | 0.222499 | 8.3:-13159137 | MS.gene61505:CDS |
| GAGTTTCGCTGCTGCGGTTA+TGG | 0.222904 | 8.3:-13159152 | MS.gene61505:CDS |
| AGTTTCGCTGCTGCGGTTAT+GGG | 0.222941 | 8.3:-13159151 | MS.gene61505:CDS |
| TTCTTTAGCACTGCTATTAC+TGG | 0.243352 | 8.3:+13156718 | None:intergenic |
| TGCTGCGGTTATGGGGTTTC+GGG | 0.263897 | 8.3:-13159143 | MS.gene61505:CDS |
| AATATTGTCAGATTGCTTAA+AGG | 0.264562 | 8.3:-13159289 | MS.gene61505:CDS |
| CTGCTGCGGTTATGGGGTTT+CGG | 0.271180 | 8.3:-13159144 | MS.gene61505:CDS |
| TGATATTTCGGTTACTGTTC+AGG | 0.293998 | 8.3:-13159248 | MS.gene61505:CDS |
| ATATTCTTATGCGGTTTATC+AGG | 0.302785 | 8.3:+13159307 | None:intergenic |
| TTGAAAAGCTATTTCTTCAT+TGG | 0.325740 | 8.3:+13156916 | None:intergenic |
| GGAAGATGAGCGTTTGTTGC+AGG | 0.326266 | 8.3:-13156741 | MS.gene61505:CDS |
| TCAACGACGCTGGCGACAAT+AGG | 0.337227 | 8.3:+13159379 | None:intergenic |
| TCTGCTCAAAATAGATGTTC+AGG | 0.339107 | 8.3:-13156843 | MS.gene61505:CDS |
| AAATTAGGGTTAGGGTTTGA+AGG | 0.344975 | 8.3:+13159475 | None:intergenic |
| ATATTGTCAGATTGCTTAAA+GGG | 0.365014 | 8.3:-13159288 | MS.gene61505:CDS |
| TGATGCACACTGCATCAAAA+AGG | 0.366988 | 8.3:-13156642 | MS.gene61505:CDS |
| TGAAGTATAAGAAGAGTAAG+AGG | 0.371661 | 8.3:+13159512 | None:intergenic |
| GATTGAGTTAGAGAAGAAGT+TGG | 0.386192 | 8.3:+13159438 | None:intergenic |
| CCCATCCATCCCCTCACTCT+TGG | 0.388061 | 8.3:+13159210 | None:intergenic |
| TTTGTTTGAGGCTGCTGCTT+CGG | 0.390574 | 8.3:-13159038 | MS.gene61505:CDS |
| AAGGTGAGGAAATTAGGGTT+AGG | 0.392061 | 8.3:+13159466 | None:intergenic |
| GGATGGGTTGGTTGTTGATG+TGG | 0.411567 | 8.3:-13159194 | MS.gene61505:CDS |
| TGAACAGTAACCGAAATATC+AGG | 0.412579 | 8.3:+13159250 | None:intergenic |
| TGGTAACATTACCGTTCATA+AGG | 0.415227 | 8.3:-13159008 | MS.gene61505:intron |
| TTACCAGTTGGTTGGTAGGC+TGG | 0.420445 | 8.3:-13156984 | MS.gene61505:intron |
| AACAGTGCGGTTTCTGCCAC+TGG | 0.425550 | 8.3:-13156959 | MS.gene61505:CDS |
| CAACGACGCTGGCGACAATA+GGG | 0.447619 | 8.3:+13159380 | None:intergenic |
| CGACAATAGGGTGAGATTGT+GGG | 0.455532 | 8.3:+13159392 | None:intergenic |
| ATTGTCGCCAGCGTCGTTGA+AGG | 0.456958 | 8.3:-13159376 | MS.gene61505:CDS |
| AGGTGAGGAAATTAGGGTTA+GGG | 0.466287 | 8.3:+13159467 | None:intergenic |
| CAAAATAGATGTTCAGGGCT+GGG | 0.467724 | 8.3:-13156837 | MS.gene61505:CDS |
| GTCTTAATTTACCAGTTGGT+TGG | 0.474899 | 8.3:-13156992 | MS.gene61505:intron |
| TTCTGCCACTGGAGCAAAGT+TGG | 0.474980 | 8.3:-13156948 | MS.gene61505:CDS |
| TAATTTACCAGTTGGTTGGT+AGG | 0.482653 | 8.3:-13156988 | MS.gene61505:intron |
| AGAAGCACACGCTCTGATGC+TGG | 0.483079 | 8.3:+13156863 | None:intergenic |
| GTGTGCATCAGTGCCATGTT+GGG | 0.483129 | 8.3:+13156655 | None:intergenic |
| TCAAAATAGATGTTCAGGGC+TGG | 0.486002 | 8.3:-13156838 | MS.gene61505:CDS |
| GCCAAGAGTGAGGGGATGGA+TGG | 0.488368 | 8.3:-13159211 | MS.gene61505:CDS |
| TGTTGATGTGGGCGCTAATG+TGG | 0.490677 | 8.3:-13159182 | MS.gene61505:CDS |
| TCAGAAAGCGAGAAGAGAAA+CGG | 0.494398 | 8.3:+13159343 | None:intergenic |
| TCAAGTACGCACTATTCCAC+TGG | 0.497286 | 8.3:-13156897 | MS.gene61505:CDS |
| GGATTTGGTTACTTTGTTTG+AGG | 0.498554 | 8.3:-13159050 | MS.gene61505:CDS |
| GCGACAATAGGGTGAGATTG+TGG | 0.498962 | 8.3:+13159391 | None:intergenic |
| TTCAAAGTTACTCTCAAGGA+AGG | 0.504924 | 8.3:-13156792 | MS.gene61505:CDS |
| CAGAAAGCGAGAAGAGAAAC+GGG | 0.507367 | 8.3:+13159344 | None:intergenic |
| TAGGGTTTGAAGGAGGAGTG+AGG | 0.507910 | 8.3:+13159485 | None:intergenic |
| GATGGGTTGGTTGTTGATGT+GGG | 0.522932 | 8.3:-13159193 | MS.gene61505:CDS |
| TCTTCCTCGTATATGAGATA+AGG | 0.525577 | 8.3:+13156758 | None:intergenic |
| CGTATATGAGATAAGGAGCT+TGG | 0.527326 | 8.3:+13156765 | None:intergenic |
| TTAGGGTTAGGGTTTGAAGG+AGG | 0.530643 | 8.3:+13159478 | None:intergenic |
| GGGATTTGATGCAATCGAAA+GGG | 0.531578 | 8.3:+13159413 | None:intergenic |
| TTCTGCAAATTCTCAAACAC+AGG | 0.532266 | 8.3:+13159106 | None:intergenic |
| CTGCTCAAAATAGATGTTCA+GGG | 0.535597 | 8.3:-13156842 | MS.gene61505:CDS |
| GCTGCTGCTTCGGATCGTCT+TGG | 0.540456 | 8.3:-13159028 | MS.gene61505:CDS |
| AAATGCCAACTTTGCTCCAG+TGG | 0.542923 | 8.3:+13156943 | None:intergenic |
| TCGAGACTTTCTCCGTAGTG+TGG | 0.549802 | 8.3:-13156693 | MS.gene61505:CDS |
| CGAGACTTTCTCCGTAGTGT+GGG | 0.555020 | 8.3:-13156692 | MS.gene61505:CDS |
| CCAAGAGTGAGGGGATGGAT+GGG | 0.556907 | 8.3:-13159210 | MS.gene61505:CDS |
| GTTTCGCTGCTGCGGTTATG+GGG | 0.559743 | 8.3:-13159150 | MS.gene61505:CDS |
| CTTGAGAAAGCCAAGAGTGA+GGG | 0.560339 | 8.3:-13159220 | MS.gene61505:CDS |
| GAAAGCCAAGAGTGAGGGGA+TGG | 0.563729 | 8.3:-13159215 | MS.gene61505:CDS |
| ACGAACACCTTCAACGACGC+TGG | 0.565621 | 8.3:+13159369 | None:intergenic |
| ATTTGCAGAAGTTATGTGAA+GGG | 0.566967 | 8.3:-13159093 | MS.gene61505:CDS |
| GAGTGAGGGGATGGATGGGT+TGG | 0.569100 | 8.3:-13159206 | MS.gene61505:CDS |
| AGTGTGCATCAGTGCCATGT+TGG | 0.570483 | 8.3:+13156654 | None:intergenic |
| GAGCTTCAAAGTTACTCTCA+AGG | 0.573311 | 8.3:-13156796 | MS.gene61505:CDS |
| GACAATAGGGTGAGATTGTG+GGG | 0.577496 | 8.3:+13159393 | None:intergenic |
| TTTGCAGAAGTTATGTGAAG+GGG | 0.586435 | 8.3:-13159092 | MS.gene61505:CDS |
| GTTGATGTGGGCGCTAATGT+GGG | 0.587683 | 8.3:-13159181 | MS.gene61505:CDS |
| AATCTGACAATATTCTTATG+CGG | 0.594837 | 8.3:+13159298 | None:intergenic |
| GGGGATTTGATGCAATCGAA+AGG | 0.598736 | 8.3:+13159412 | None:intergenic |
| GCTTGAGAAAGCCAAGAGTG+AGG | 0.599024 | 8.3:-13159221 | MS.gene61505:CDS |
| AATTTGCAGAAGTTATGTGA+AGG | 0.603276 | 8.3:-13159094 | MS.gene61505:CDS |
| AATGGCGAGTTTCGCTGCTG+CGG | 0.603842 | 8.3:-13159158 | MS.gene61505:CDS |
| TATCATGATTGCACCCAACA+TGG | 0.604242 | 8.3:-13156668 | MS.gene61505:CDS |
| TGTGGGCGCTAATGTGGGAA+TGG | 0.612050 | 8.3:-13159176 | MS.gene61505:CDS |
| TGGGAATATCATGTTCTCAA+AGG | 0.613591 | 8.3:-13156818 | MS.gene61505:CDS |
| GCTGGAATCACTTCATCCAG+TGG | 0.621278 | 8.3:+13156881 | None:intergenic |
| TCAAAGTTACTCTCAAGGAA+GGG | 0.627168 | 8.3:-13156791 | MS.gene61505:CDS |
| AAGAAACCTAACCTTATGAA+CGG | 0.634798 | 8.3:+13158997 | None:intergenic |
| TATTTCGGTTACTGTTCAGG+AGG | 0.635656 | 8.3:-13159245 | MS.gene61505:CDS |
| TTGAGAAAGCCAAGAGTGAG+GGG | 0.649164 | 8.3:-13159219 | MS.gene61505:CDS |
| GGATTTGATGCAATCGAAAG+GGG | 0.653814 | 8.3:+13159414 | None:intergenic |
| CTTTGGGGAGAGTAAACGAG+AGG | 0.661821 | 8.3:+13159564 | None:intergenic |
| AATCATGATAACCCACACTA+CGG | 0.665119 | 8.3:+13156681 | None:intergenic |
| TTTGGGGAGAGTAAACGAGA+GGG | 0.678894 | 8.3:+13159565 | None:intergenic |
| TGGTAGGCTGGACAACAGTG+CGG | 0.687351 | 8.3:-13156972 | MS.gene61505:CDS |
| AGCTCCTTATCTCATATACG+AGG | 0.689074 | 8.3:-13156762 | MS.gene61505:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | GTATGTTTATTTAAATGAAA+TGG | - | chr8.3:13159093-13159112 | MS.gene61505:CDS | 15.0% |
| !!! | TTATTTTTAAGTATCTTCTT+AGG | - | chr8.3:13158887-13158906 | MS.gene61505:intron | 15.0% |
| !! | AAGTTATTAACATGCTAAAT+AGG | - | chr8.3:13157861-13157880 | MS.gene61505:intron | 20.0% |
| !! | ATTTAAATGAAATGGTTATG+AGG | - | chr8.3:13159101-13159120 | MS.gene61505:CDS | 20.0% |
| !! | TAAATAAACATACACTTTCA+TGG | + | chr8.3:13159086-13159105 | None:intergenic | 20.0% |
| !! | TGTATGTGAATGATATTAAT+TGG | - | chr8.3:13157706-13157725 | MS.gene61505:intron | 20.0% |
| !!! | AACCAAAAATAGAACAATTT+TGG | + | chr8.3:13159027-13159046 | None:intergenic | 20.0% |
| !!! | AACCAAAATTGTTCTATTTT+TGG | - | chr8.3:13159022-13159041 | MS.gene61505:CDS | 20.0% |
| !!! | ACATGCATTTAAAATAGAAT+AGG | - | chr8.3:13158395-13158414 | MS.gene61505:intron | 20.0% |
| !!! | ATTTTGGTTCATATAGTTTA+TGG | - | chr8.3:13157297-13157316 | MS.gene61505:intron | 20.0% |
| !!! | ATTTTGTGTATACTCATAAT+CGG | - | chr8.3:13158731-13158750 | MS.gene61505:intron | 20.0% |
| !!! | GTTATTTTCCTTTTCTTTTT+GGG | - | chr8.3:13159215-13159234 | MS.gene61505:CDS | 20.0% |
| !!! | TCTTTAGTTTATTTTAGAGA+AGG | - | chr8.3:13157797-13157816 | MS.gene61505:intron | 20.0% |
| !!! | TGTTATTTTCCTTTTCTTTT+TGG | - | chr8.3:13159214-13159233 | MS.gene61505:CDS | 20.0% |
| ! | AAGAGTAAAAAAAGAAGCTT+TGG | + | chr8.3:13156685-13156704 | None:intergenic | 25.0% |
| ! | AAGTATAATCGCAAAATTCT+AGG | - | chr8.3:13158761-13158780 | MS.gene61505:intron | 25.0% |
| ! | AATAGATAGATAGCATTCTA+TGG | + | chr8.3:13157583-13157602 | None:intergenic | 25.0% |
| ! | AATATTGTCAGATTGCTTAA+AGG | - | chr8.3:13156940-13156959 | MS.gene61505:CDS | 25.0% |
| ! | AATCTGACAATATTCTTATG+CGG | + | chr8.3:13156934-13156953 | None:intergenic | 25.0% |
| ! | AATTAAGACCCAAAAAGAAA+AGG | + | chr8.3:13159226-13159245 | None:intergenic | 25.0% |
| ! | ACGGATTTATACACATTAAT+TGG | - | chr8.3:13158146-13158165 | MS.gene61505:intron | 25.0% |
| ! | AGAGTAAAAAAAGAAGCTTT+GGG | + | chr8.3:13156684-13156703 | None:intergenic | 25.0% |
| ! | AGGAATTATAGTAGAAACTT+AGG | - | chr8.3:13157345-13157364 | MS.gene61505:intron | 25.0% |
| ! | ATATTGTCAGATTGCTTAAA+GGG | - | chr8.3:13156941-13156960 | MS.gene61505:CDS | 25.0% |
| ! | ATTCTACGTATAATCTGTAA+GGG | - | chr8.3:13158292-13158311 | MS.gene61505:intron | 25.0% |
| ! | CATATGATTATATGAATGAC+AGG | + | chr8.3:13159190-13159209 | None:intergenic | 25.0% |
| ! | GTGAATGATATTAATTGGTT+AGG | - | chr8.3:13157711-13157730 | MS.gene61505:intron | 25.0% |
| ! | TGTGCATTATAAGTTTCTAT+GGG | + | chr8.3:13158971-13158990 | None:intergenic | 25.0% |
| ! | TTGTGCATTATAAGTTTCTA+TGG | + | chr8.3:13158972-13158991 | None:intergenic | 25.0% |
| !! | CTTCAACTTTAAGAAAATCA+AGG | + | chr8.3:13157499-13157518 | None:intergenic | 25.0% |
| !! | GCTTGAATTGAATTGAATTT+TGG | - | chr8.3:13157281-13157300 | MS.gene61505:intron | 25.0% |
| !! | GTTTAGACTTTAGAAAGTAT+AGG | - | chr8.3:13157430-13157449 | MS.gene61505:intron | 25.0% |
| !! | TTATACACATTAATTGGTCT+CGG | - | chr8.3:13158152-13158171 | MS.gene61505:intron | 25.0% |
| !!! | AGTTTTATGCTAATAACACT+TGG | - | chr8.3:13157619-13157638 | MS.gene61505:intron | 25.0% |
| !!! | ATAACATAAAAGTATCTCCT+AGG | + | chr8.3:13158038-13158057 | None:intergenic | 25.0% |
| !!! | GGTTTATTTTAATAGAGTTG+CGG | - | chr8.3:13157158-13157177 | MS.gene61505:intron | 25.0% |
| !!! | TAACATAAAAGTATCTCCTA+GGG | + | chr8.3:13158037-13158056 | None:intergenic | 25.0% |
| !!! | TAGGATTTTAGGATTGAAAT+CGG | - | chr8.3:13158780-13158799 | MS.gene61505:intron | 25.0% |
| !!! | TTGAAAAGCTATTTCTTCAT+TGG | + | chr8.3:13159316-13159335 | None:intergenic | 25.0% |
| !!! | TTTTAGGAAACCTGATATTT+CGG | - | chr8.3:13156969-13156988 | MS.gene61505:CDS | 25.0% |
| !!! | TTTTTAAGGTGAGGAAATTA+GGG | + | chr8.3:13156771-13156790 | None:intergenic | 25.0% |
| AAAAAAAACACTTGCCTAAG+AGG | + | chr8.3:13158843-13158862 | None:intergenic | 30.0% | |
| AAGAAACCTAACCTTATGAA+CGG | + | chr8.3:13157235-13157254 | None:intergenic | 30.0% | |
| AATTTGCAGAAGTTATGTGA+AGG | - | chr8.3:13157135-13157154 | MS.gene61505:intron | 30.0% | |
| ACACAAGATTCCACAAAATT+GGG | - | chr8.3:13158708-13158727 | MS.gene61505:intron | 30.0% | |
| AGAATCGTTACATTAATCGT+AGG | - | chr8.3:13158335-13158354 | MS.gene61505:intron | 30.0% | |
| ATATTCTTATGCGGTTTATC+AGG | + | chr8.3:13156925-13156944 | None:intergenic | 30.0% | |
| ATTTGCAGAAGTTATGTGAA+GGG | - | chr8.3:13157136-13157155 | MS.gene61505:intron | 30.0% | |
| CGAGTATAATAAGCAATTAG+AGG | - | chr8.3:13157758-13157777 | MS.gene61505:intron | 30.0% | |
| CTGCTTTCATTGTAAAAACT+GGG | - | chr8.3:13158236-13158255 | MS.gene61505:intron | 30.0% | |
| CTTATTATACTCGAACTAGA+CGG | + | chr8.3:13157751-13157770 | None:intergenic | 30.0% | |
| GAAACTTATAATGCACAAGA+TGG | - | chr8.3:13158974-13158993 | MS.gene61505:intron | 30.0% | |
| GAATATTAGCTCCATACAAA+TGG | + | chr8.3:13157901-13157920 | None:intergenic | 30.0% | |
| GAGGTGGAAATTTATAAATG+AGG | - | chr8.3:13159120-13159139 | MS.gene61505:CDS | 30.0% | |
| GAGTAAAAAAAGAAGCTTTG+GGG | + | chr8.3:13156683-13156702 | None:intergenic | 30.0% | |
| GATTCTACGTATAATCTGTA+AGG | - | chr8.3:13158291-13158310 | MS.gene61505:intron | 30.0% | |
| GGTGAATGAAATTGTGAAAT+CGG | - | chr8.3:13157463-13157482 | MS.gene61505:intron | 30.0% | |
| GTGAATGAAATTGTGAAATC+GGG | - | chr8.3:13157464-13157483 | MS.gene61505:intron | 30.0% | |
| TAAATGAAATGGTTATGAGG+TGG | - | chr8.3:13159104-13159123 | MS.gene61505:CDS | 30.0% | |
| TACACAAGATTCCACAAAAT+TGG | - | chr8.3:13158707-13158726 | MS.gene61505:intron | 30.0% | |
| TAGTAGCATTGCATGATAAA+TGG | + | chr8.3:13159164-13159183 | None:intergenic | 30.0% | |
| TCTGCTTTCATTGTAAAAAC+TGG | - | chr8.3:13158235-13158254 | MS.gene61505:intron | 30.0% | |
| TGAAGTATAAGAAGAGTAAG+AGG | + | chr8.3:13156720-13156739 | None:intergenic | 30.0% | |
| TGCAAAGTAGGATTAAGATA+TGG | + | chr8.3:13157553-13157572 | None:intergenic | 30.0% | |
| TTCCCTGCTTAACAAATATA+CGG | - | chr8.3:13158127-13158146 | MS.gene61505:intron | 30.0% | |
| TTCTACGTATAATCTGTAAG+GGG | - | chr8.3:13158293-13158312 | MS.gene61505:intron | 30.0% | |
| TTGTGAATTGAAATGTAGTG+AGG | - | chr8.3:13157325-13157344 | MS.gene61505:intron | 30.0% | |
| TTTGTATGGAGCTAATATTC+AGG | - | chr8.3:13157901-13157920 | MS.gene61505:intron | 30.0% | |
| ! | AATCCGTATATTTGTTAAGC+AGG | + | chr8.3:13158133-13158152 | None:intergenic | 30.0% |
| ! | ATCCGTATATTTGTTAAGCA+GGG | + | chr8.3:13158132-13158151 | None:intergenic | 30.0% |
| ! | GTTTCTTGTGTTTAAGTTTG+TGG | - | chr8.3:13157248-13157267 | MS.gene61505:intron | 30.0% |
| ! | TACACAAAATCCCAATTTTG+TGG | + | chr8.3:13158721-13158740 | None:intergenic | 30.0% |
| ! | TTTTAATAGAGTTGCGGATT+TGG | - | chr8.3:13157164-13157183 | MS.gene61505:intron | 30.0% |
| !!! | AGAGAAGAAGTTGGTTTTTA+AGG | + | chr8.3:13156785-13156804 | None:intergenic | 30.0% |
| !!! | AGGATTTTAGGATTGAAATC+GGG | - | chr8.3:13158781-13158800 | MS.gene61505:intron | 30.0% |
| !!! | GTTTTTAAGGTGAGGAAATT+AGG | + | chr8.3:13156772-13156791 | None:intergenic | 30.0% |
| !!! | TCGCAAAATTCTAGGATTTT+AGG | - | chr8.3:13158769-13158788 | MS.gene61505:intron | 30.0% |
| AAATTAGGGTTAGGGTTTGA+AGG | + | chr8.3:13156757-13156776 | None:intergenic | 35.0% | |
| AATCATGATAACCCACACTA+CGG | + | chr8.3:13159551-13159570 | None:intergenic | 35.0% | |
| ACATACACTTTCATGGAATC+AGG | + | chr8.3:13159079-13159098 | None:intergenic | 35.0% | |
| ACATAGACACTTTATGACCA+TGG | + | chr8.3:13158817-13158836 | None:intergenic | 35.0% | |
| ACATTACCGTTCATAAGGTT+AGG | - | chr8.3:13157226-13157245 | MS.gene61505:intron | 35.0% | |
| ACGGATGTGGAAAAAAATAG+CGG | + | chr8.3:13157662-13157681 | None:intergenic | 35.0% | |
| CATACACTTTCATGGAATCA+GGG | + | chr8.3:13159078-13159097 | None:intergenic | 35.0% | |
| CTATGGGAAGTGATTATCAT+TGG | + | chr8.3:13158955-13158974 | None:intergenic | 35.0% | |
| CTGAAAGTTTGATCAACTTG+AGG | - | chr8.3:13157941-13157960 | MS.gene61505:intron | 35.0% | |
| CTGCTCAAAATAGATGTTCA+GGG | - | chr8.3:13159387-13159406 | MS.gene61505:CDS | 35.0% | |
| GATTGAGTTAGAGAAGAAGT+TGG | + | chr8.3:13156794-13156813 | None:intergenic | 35.0% | |
| GGAAGTGATTATCATTGGTA+TGG | + | chr8.3:13158950-13158969 | None:intergenic | 35.0% | |
| GGAATTGTTTCACAGAAAAG+TGG | - | chr8.3:13158682-13158701 | MS.gene61505:intron | 35.0% | |
| GTCTTAATTTACCAGTTGGT+TGG | - | chr8.3:13159237-13159256 | MS.gene61505:CDS | 35.0% | |
| GTGAAACAATTCCACGATTA+TGG | + | chr8.3:13158675-13158694 | None:intergenic | 35.0% | |
| TAAGCAAGGTAGTCAAAATC+AGG | - | chr8.3:13158269-13158288 | MS.gene61505:intron | 35.0% | |
| TAATTTACCAGTTGGTTGGT+AGG | - | chr8.3:13159241-13159260 | MS.gene61505:CDS | 35.0% | |
| TATGGTGAATCTTGCAAAGT+AGG | + | chr8.3:13157565-13157584 | None:intergenic | 35.0% | |
| TCAAAGTTACTCTCAAGGAA+GGG | - | chr8.3:13159438-13159457 | MS.gene61505:CDS | 35.0% | |
| TCTACGTATAATCTGTAAGG+GGG | - | chr8.3:13158294-13158313 | MS.gene61505:intron | 35.0% | |
| TCTGCTCAAAATAGATGTTC+AGG | - | chr8.3:13159386-13159405 | MS.gene61505:CDS | 35.0% | |
| TCTTCCTCGTATATGAGATA+AGG | + | chr8.3:13159474-13159493 | None:intergenic | 35.0% | |
| TGAACAGTAACCGAAATATC+AGG | + | chr8.3:13156982-13157001 | None:intergenic | 35.0% | |
| TGATATTTCGGTTACTGTTC+AGG | - | chr8.3:13156981-13157000 | MS.gene61505:intron | 35.0% | |
| TGCATGATAAATGGTTTGAC+AGG | + | chr8.3:13159155-13159174 | None:intergenic | 35.0% | |
| TGGGAATATCATGTTCTCAA+AGG | - | chr8.3:13159411-13159430 | MS.gene61505:CDS | 35.0% | |
| TGGTAACATTACCGTTCATA+AGG | - | chr8.3:13157221-13157240 | MS.gene61505:intron | 35.0% | |
| TGTATACTCATAATCGGTGA+TGG | - | chr8.3:13158737-13158756 | MS.gene61505:intron | 35.0% | |
| TTCAAAGTTACTCTCAAGGA+AGG | - | chr8.3:13159437-13159456 | MS.gene61505:CDS | 35.0% | |
| TTCTGCAAATTCTCAAACAC+AGG | + | chr8.3:13157126-13157145 | None:intergenic | 35.0% | |
| TTCTTTAGCACTGCTATTAC+TGG | + | chr8.3:13159514-13159533 | None:intergenic | 35.0% | |
| TTGGGTCTTAATTTACCAGT+TGG | - | chr8.3:13159233-13159252 | MS.gene61505:CDS | 35.0% | |
| TTTGCAGAAGTTATGTGAAG+GGG | - | chr8.3:13157137-13157156 | MS.gene61505:intron | 35.0% | |
| ! | GAAAGTATAGGTGTGGTTAA+TGG | - | chr8.3:13157442-13157461 | MS.gene61505:intron | 35.0% |
| ! | GACTTTAGAAAGTATAGGTG+TGG | - | chr8.3:13157435-13157454 | MS.gene61505:intron | 35.0% |
| ! | GAGTTTTTACTTTCCTAGTC+AGG | - | chr8.3:13157990-13158009 | MS.gene61505:intron | 35.0% |
| ! | GGATTTGGTTACTTTGTTTG+AGG | - | chr8.3:13157179-13157198 | MS.gene61505:intron | 35.0% |
| ! | TGCTTAAAGGGAAAGCTTTT+AGG | - | chr8.3:13156953-13156972 | MS.gene61505:CDS | 35.0% |
| !!! | AGAAGTTGGTTTTTAAGGTG+AGG | + | chr8.3:13156780-13156799 | None:intergenic | 35.0% |
| !!! | GCTGTTTTGTTTGAGACTTA+TGG | + | chr8.3:13158617-13158636 | None:intergenic | 35.0% |
| AAATCTCGTGCAAGATTGCA+CGG | + | chr8.3:13157681-13157700 | None:intergenic | 40.0% | |
| AAGGTGAGGAAATTAGGGTT+AGG | + | chr8.3:13156766-13156785 | None:intergenic | 40.0% | |
| AGACCTGATTATCTCAGACA+GGG | - | chr8.3:13158097-13158116 | MS.gene61505:intron | 40.0% | |
| AGCTCCTTATCTCATATACG+AGG | - | chr8.3:13159467-13159486 | MS.gene61505:CDS | 40.0% | |
| AGGTGAGGAAATTAGGGTTA+GGG | + | chr8.3:13156765-13156784 | None:intergenic | 40.0% | |
| AGTGTCTATGTTCTCCTCTT+AGG | - | chr8.3:13158826-13158845 | MS.gene61505:intron | 40.0% | |
| CAAAATAGATGTTCAGGGCT+GGG | - | chr8.3:13159392-13159411 | MS.gene61505:CDS | 40.0% | |
| CAATTCCACGATTATGGTCA+CGG | + | chr8.3:13158669-13158688 | None:intergenic | 40.0% | |
| CATGCTAAATAGGATAGACC+CGG | - | chr8.3:13157871-13157890 | MS.gene61505:intron | 40.0% | |
| CGGATGTGGAAAAAAATAGC+GGG | + | chr8.3:13157661-13157680 | None:intergenic | 40.0% | |
| CGTATATGAGATAAGGAGCT+TGG | + | chr8.3:13159467-13159486 | None:intergenic | 40.0% | |
| CTCTTCTCGCTTTCTGATTT+CGG | - | chr8.3:13156892-13156911 | MS.gene61505:CDS | 40.0% | |
| GAGCCAGTTGAAAACAATCA+CGG | - | chr8.3:13158060-13158079 | MS.gene61505:intron | 40.0% | |
| GAGCTTCAAAGTTACTCTCA+AGG | - | chr8.3:13159433-13159452 | MS.gene61505:CDS | 40.0% | |
| GATGAATCAGCCTGAATTTC+CGG | - | chr8.3:13157518-13157537 | MS.gene61505:intron | 40.0% | |
| GGATTTGATGCAATCGAAAG+GGG | + | chr8.3:13156818-13156837 | None:intergenic | 40.0% | |
| GGGATTTGATGCAATCGAAA+GGG | + | chr8.3:13156819-13156838 | None:intergenic | 40.0% | |
| TAAGATATGGAATGTCCAGC+CGG | + | chr8.3:13157540-13157559 | None:intergenic | 40.0% | |
| TATCATGATTGCACCCAACA+TGG | - | chr8.3:13159561-13159580 | MS.gene61505:CDS | 40.0% | |
| TATTTCGGTTACTGTTCAGG+AGG | - | chr8.3:13156984-13157003 | MS.gene61505:intron | 40.0% | |
| TCAAAATAGATGTTCAGGGC+TGG | - | chr8.3:13159391-13159410 | MS.gene61505:CDS | 40.0% | |
| TCAGAAAGCGAGAAGAGAAA+CGG | + | chr8.3:13156889-13156908 | None:intergenic | 40.0% | |
| TGATGCACACTGCATCAAAA+AGG | - | chr8.3:13159587-13159606 | MS.gene61505:CDS | 40.0% | |
| TGGGATGAATGTCATAAGCA+AGG | - | chr8.3:13158255-13158274 | MS.gene61505:intron | 40.0% | |
| TTGAAAACAATCACGGCTGT+TGG | - | chr8.3:13158067-13158086 | MS.gene61505:intron | 40.0% | |
| !!! | AATCGGGATTTTGACTACCA+TGG | - | chr8.3:13158797-13158816 | MS.gene61505:intron | 40.0% |
| AAATGCCAACTTTGCTCCAG+TGG | + | chr8.3:13159289-13159308 | None:intergenic | 45.0% | |
| AGCAGAATTGTCACCTGACT+AGG | + | chr8.3:13158006-13158025 | None:intergenic | 45.0% | |
| CAGAAAGCGAGAAGAGAAAC+GGG | + | chr8.3:13156888-13156907 | None:intergenic | 45.0% | |
| CAGACCTGATTATCTCAGAC+AGG | - | chr8.3:13158096-13158115 | MS.gene61505:intron | 45.0% | |
| CGACAATAGGGTGAGATTGT+GGG | + | chr8.3:13156840-13156859 | None:intergenic | 45.0% | |
| CTTGAGAAAGCCAAGAGTGA+GGG | - | chr8.3:13157009-13157028 | MS.gene61505:intron | 45.0% | |
| GACAATAGGGTGAGATTGTG+GGG | + | chr8.3:13156839-13156858 | None:intergenic | 45.0% | |
| GATTATCTCAGACAGGGCTA+TGG | - | chr8.3:13158103-13158122 | MS.gene61505:intron | 45.0% | |
| GGGGATTTGATGCAATCGAA+AGG | + | chr8.3:13156820-13156839 | None:intergenic | 45.0% | |
| TAATAACACTTGGCACCTGG+CGG | - | chr8.3:13157629-13157648 | MS.gene61505:intron | 45.0% | |
| TACAATGAAAGCAGACCAGC+TGG | + | chr8.3:13158230-13158249 | None:intergenic | 45.0% | |
| TCAAGTACGCACTATTCCAC+TGG | - | chr8.3:13159332-13159351 | MS.gene61505:CDS | 45.0% | |
| TGCTAATAACACTTGGCACC+TGG | - | chr8.3:13157626-13157645 | MS.gene61505:intron | 45.0% | |
| TTAGGGTTAGGGTTTGAAGG+AGG | + | chr8.3:13156754-13156773 | None:intergenic | 45.0% | |
| TTGAGAAAGCCAAGAGTGAG+GGG | - | chr8.3:13157010-13157029 | MS.gene61505:intron | 45.0% | |
| TTTGGGGAGAGTAAACGAGA+GGG | + | chr8.3:13156667-13156686 | None:intergenic | 45.0% | |
| ! | ATTCTGCTGTTAGCTTCCCT+AGG | - | chr8.3:13158018-13158037 | MS.gene61505:intron | 45.0% |
| ! | ATTGGTCTCGGTCTTTCATC+TGG | - | chr8.3:13158164-13158183 | MS.gene61505:intron | 45.0% |
| ! | CAGCCGTGATTGTTTTCAAC+TGG | + | chr8.3:13158066-13158085 | None:intergenic | 45.0% |
| ! | TAGCCCTGTCTGAGATAATC+AGG | + | chr8.3:13158103-13158122 | None:intergenic | 45.0% |
| ! | TTTGTTTGAGGCTGCTGCTT+CGG | - | chr8.3:13157191-13157210 | MS.gene61505:intron | 45.0% |
| !! | GATGGGTTGGTTGTTGATGT+GGG | - | chr8.3:13157036-13157055 | MS.gene61505:intron | 45.0% |
| AATCAGCCTGAATTTCCGGC+TGG | - | chr8.3:13157522-13157541 | MS.gene61505:intron | 50.0% | |
| AGTGTGCATCAGTGCCATGT+TGG | + | chr8.3:13159578-13159597 | None:intergenic | 50.0% | |
| AGTTTCGCTGCTGCGGTTAT+GGG | - | chr8.3:13157078-13157097 | MS.gene61505:intron | 50.0% | |
| CGAGACTTTCTCCGTAGTGT+GGG | - | chr8.3:13159537-13159556 | MS.gene61505:CDS | 50.0% | |
| CTCCATACAAATGGCACACC+GGG | + | chr8.3:13157892-13157911 | None:intergenic | 50.0% | |
| GAATGTCCAGCCGGAAATTC+AGG | + | chr8.3:13157531-13157550 | None:intergenic | 50.0% | |
| GCGACAATAGGGTGAGATTG+TGG | + | chr8.3:13156841-13156860 | None:intergenic | 50.0% | |
| GCTCCATACAAATGGCACAC+CGG | + | chr8.3:13157893-13157912 | None:intergenic | 50.0% | |
| GCTGGAATCACTTCATCCAG+TGG | + | chr8.3:13159351-13159370 | None:intergenic | 50.0% | |
| GCTTGAGAAAGCCAAGAGTG+AGG | - | chr8.3:13157008-13157027 | MS.gene61505:intron | 50.0% | |
| GTGTGCATCAGTGCCATGTT+GGG | + | chr8.3:13159577-13159596 | None:intergenic | 50.0% | |
| GTTGATGTGGGCGCTAATGT+GGG | - | chr8.3:13157048-13157067 | MS.gene61505:intron | 50.0% | |
| TAGGGTTTGAAGGAGGAGTG+AGG | + | chr8.3:13156747-13156766 | None:intergenic | 50.0% | |
| TCGAGACTTTCTCCGTAGTG+TGG | - | chr8.3:13159536-13159555 | MS.gene61505:CDS | 50.0% | |
| TGTTGATGTGGGCGCTAATG+TGG | - | chr8.3:13157047-13157066 | MS.gene61505:intron | 50.0% | |
| TTCCACGATTATGGTCACGG+TGG | + | chr8.3:13158666-13158685 | None:intergenic | 50.0% | |
| TTCTGCCACTGGAGCAAAGT+TGG | - | chr8.3:13159281-13159300 | MS.gene61505:CDS | 50.0% | |
| ! | CTTTGGGGAGAGTAAACGAG+AGG | + | chr8.3:13156668-13156687 | None:intergenic | 50.0% |
| ! | GGAAGATGAGCGTTTGTTGC+AGG | - | chr8.3:13159488-13159507 | MS.gene61505:CDS | 50.0% |
| !! | CACGGTGGTGGAACTACAAA+AGG | + | chr8.3:13158651-13158670 | None:intergenic | 50.0% |
| !! | GGATGGGTTGGTTGTTGATG+TGG | - | chr8.3:13157035-13157054 | MS.gene61505:intron | 50.0% |
| !! | TTACCAGTTGGTTGGTAGGC+TGG | - | chr8.3:13159245-13159264 | MS.gene61505:CDS | 50.0% |
| !!! | GGTTATGGGGTTTCGGGTTT+TGG | - | chr8.3:13157092-13157111 | MS.gene61505:intron | 50.0% |
| AACAGTGCGGTTTCTGCCAC+TGG | - | chr8.3:13159270-13159289 | MS.gene61505:CDS | 55.0% | |
| AATGGCGAGTTTCGCTGCTG+CGG | - | chr8.3:13157071-13157090 | MS.gene61505:intron | 55.0% | |
| ACGAACACCTTCAACGACGC+TGG | + | chr8.3:13156863-13156882 | None:intergenic | 55.0% | |
| ATTGTCGCCAGCGTCGTTGA+AGG | - | chr8.3:13156853-13156872 | MS.gene61505:CDS | 55.0% | |
| CAACGACGCTGGCGACAATA+GGG | + | chr8.3:13156852-13156871 | None:intergenic | 55.0% | |
| CACCACCGTGACCATAATCG+TGG | - | chr8.3:13158661-13158680 | MS.gene61505:intron | 55.0% | |
| CACGATTATGGTCACGGTGG+TGG | + | chr8.3:13158663-13158682 | None:intergenic | 55.0% | |
| CCAAGAGTGAGGGGATGGAT+GGG | - | chr8.3:13157019-13157038 | MS.gene61505:intron | 55.0% | |
| CGTGCAAGATTGCACGGATG+TGG | + | chr8.3:13157675-13157694 | None:intergenic | 55.0% | |
| CTGCTGCGGTTATGGGGTTT+CGG | - | chr8.3:13157085-13157104 | MS.gene61505:intron | 55.0% | |
| GAAAGCCAAGAGTGAGGGGA+TGG | - | chr8.3:13157014-13157033 | MS.gene61505:intron | 55.0% | |
| GAGTTTCGCTGCTGCGGTTA+TGG | - | chr8.3:13157077-13157096 | MS.gene61505:intron | 55.0% | |
| GTTTCGCTGCTGCGGTTATG+GGG | - | chr8.3:13157079-13157098 | MS.gene61505:intron | 55.0% | |
| TCAACGACGCTGGCGACAAT+AGG | + | chr8.3:13156853-13156872 | None:intergenic | 55.0% | |
| TGACTCGTTACAGAGCCAGC+TGG | - | chr8.3:13158212-13158231 | MS.gene61505:intron | 55.0% | |
| TGCTGCGGTTATGGGGTTTC+GGG | - | chr8.3:13157086-13157105 | MS.gene61505:intron | 55.0% | |
| TGGTAGGCTGGACAACAGTG+CGG | - | chr8.3:13159257-13159276 | MS.gene61505:CDS | 55.0% | |
| TGTCCAGCCTACCAACCAAC+TGG | + | chr8.3:13159251-13159270 | None:intergenic | 55.0% | |
| TGTGGGCGCTAATGTGGGAA+TGG | - | chr8.3:13157053-13157072 | MS.gene61505:intron | 55.0% | |
| ! | AATAGCGGGAAAACACCGCC+AGG | + | chr8.3:13157647-13157666 | None:intergenic | 55.0% |
| ! | AGAAGCACACGCTCTGATGC+TGG | + | chr8.3:13159369-13159388 | None:intergenic | 55.0% |
| !! | GACCCGGTGTGCCATTTGTA+TGG | - | chr8.3:13157887-13157906 | MS.gene61505:intron | 55.0% |
| !! | GCTGGCTCTGTAACGAGTCA+TGG | + | chr8.3:13158212-13158231 | None:intergenic | 55.0% |
| CCCATCCATCCCCTCACTCT+TGG | + | chr8.3:13157022-13157041 | None:intergenic | 60.0% | |
| GAGTGAGGGGATGGATGGGT+TGG | - | chr8.3:13157023-13157042 | MS.gene61505:intron | 60.0% | |
| GCCAAGAGTGAGGGGATGGA+TGG | - | chr8.3:13157018-13157037 | MS.gene61505:intron | 60.0% | |
| ! | GCTGCTGCTTCGGATCGTCT+TGG | - | chr8.3:13157201-13157220 | MS.gene61505:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.3 | gene | 13156637 | 13159614 | 13156637 | ID=MS.gene61505 |
| chr8.3 | mRNA | 13156637 | 13159614 | 13156637 | ID=MS.gene61505.t1;Parent=MS.gene61505 |
| chr8.3 | exon | 13159009 | 13159614 | 13159009 | ID=MS.gene61505.t1.exon1;Parent=MS.gene61505.t1 |
| chr8.3 | CDS | 13159009 | 13159614 | 13159009 | ID=cds.MS.gene61505.t1;Parent=MS.gene61505.t1 |
| chr8.3 | exon | 13156637 | 13156999 | 13156637 | ID=MS.gene61505.t1.exon2;Parent=MS.gene61505.t1 |
| chr8.3 | CDS | 13156637 | 13156999 | 13156637 | ID=cds.MS.gene61505.t1;Parent=MS.gene61505.t1 |
| Gene Sequence |
| Protein sequence |
