AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene05978


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05978.t1 MTR_8g104280 97.452 628 15 1 1 628 124 750 0.0 1281
MS.gene05978.t1 MTR_2g099870 88.740 373 42 0 220 592 236 608 0.0 694
MS.gene05978.t1 MTR_2g099870 75.352 142 34 1 1 141 109 250 6.30e-55 197
MS.gene05978.t1 MTR_1g100210 36.404 228 124 8 356 562 671 898 1.48e-34 140
MS.gene05978.t1 MTR_4g025470 49.714 175 33 5 4 177 1520 1640 9.47e-34 139
MS.gene05978.t1 MTR_4g025460 59.854 137 35 5 487 619 38 158 7.55e-31 119
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene05978.t1 AT4G10760 66.893 589 154 9 1 586 125 675 0.0 747
MS.gene05978.t1 AT4G09980 36.842 209 97 10 369 549 617 818 1.97e-29 125
MS.gene05978.t1 AT4G09980 36.646 161 69 9 369 503 617 770 4.56e-19 92.0

Find 0 sgRNAs with CRISPR-Local

Find 265 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATGTTATTGAAAAGAA+GGG + 57363:13788-13807 MS.gene05978:intron 15.0%
!! AAACGATTTCTTATTAATTA+TGG - 57363:12264-12283 MS.gene05978:intergenic 15.0%
!! AATCTTAAAATTGTTTGATT+GGG + 57363:14174-14193 MS.gene05978:intron 15.0%
!! AATTAATAAGAAATCGTTTA+GGG + 57363:12265-12284 MS.gene05978:CDS 15.0%
!! TAAAAATGTTATTGAAAAGA+AGG + 57363:13787-13806 MS.gene05978:intron 15.0%
!! TAATCTTAAAATTGTTTGAT+TGG + 57363:14173-14192 MS.gene05978:intron 15.0%
!! TAATTAATAAGAAATCGTTT+AGG + 57363:12264-12283 MS.gene05978:CDS 15.0%
!! TAGTTAAACTATTTAAAAGA+TGG - 57363:13926-13945 MS.gene05978:intergenic 15.0%
!!! AAATCATAAACTGTTTTTTA+TGG + 57363:14343-14362 MS.gene05978:intron 15.0%
!!! TCTTTTCAATAACATTTTTA+AGG - 57363:13787-13806 MS.gene05978:intergenic 15.0%
!! AAAACAGTTTATGATTTCTA+TGG - 57363:14340-14359 MS.gene05978:intergenic 20.0%
!! ACTAATCAAACTATGAAAAT+TGG + 57363:12722-12741 MS.gene05978:intron 20.0%
!! ATATCAATTAAATGATCTCT+TGG + 57363:14265-14284 MS.gene05978:intron 20.0%
!! ATCTTAAAATTGTTTGATTG+GGG + 57363:14175-14194 MS.gene05978:intron 20.0%
!! TAACCAAATAAAAAAAGTTG+AGG + 57363:13416-13435 MS.gene05978:intron 20.0%
!!! ATTTTTCAGTTCAAAACTAA+AGG + 57363:12501-12520 MS.gene05978:intron 20.0%
!!! TTTTACTAATAATCTGCATT+TGG + 57363:13444-13463 MS.gene05978:intron 20.0%
!!! TTTTTTTGGGAGTTTTTTAA+TGG + 57363:14150-14169 MS.gene05978:intron 20.0%
! ATAACAGCTTAAGATTACTT+TGG - 57363:14399-14418 MS.gene05978:intergenic 25.0%
! ATCCACATATTATCAGATAT+TGG - 57363:12011-12030 MS.gene05978:intergenic 25.0%
! CATATTTACATGTCTATCAA+AGG - 57363:12979-12998 MS.gene05978:intergenic 25.0%
! CTAACAAGTTATTGAAAAGT+TGG + 57363:13743-13762 MS.gene05978:intron 25.0%
! CTTAAATTTGAACACTCAAA+TGG - 57363:13977-13996 MS.gene05978:intergenic 25.0%
! GAAATTAGAGAATGATCAAA+CGG + 57363:11650-11669 MS.gene05978:CDS 25.0%
! TCAAACTATGAAAATTGGTA+CGG + 57363:12727-12746 MS.gene05978:intron 25.0%
! TTAAATAGTTTAACTATGCC+TGG + 57363:13930-13949 MS.gene05978:intron 25.0%
!! AAATCCTCATCATATGTTTT+TGG - 57363:12215-12234 MS.gene05978:intergenic 25.0%
!! TGATATACGTAACTTTAGAA+TGG + 57363:13138-13157 MS.gene05978:CDS 25.0%
!!! AAAGTTGGTTGTTTTTGTTT+AGG + 57363:13758-13777 MS.gene05978:intron 25.0%
!!! AACTTTAGAATGGACATATT+AGG + 57363:13148-13167 MS.gene05978:CDS 25.0%
!!! AAGCCTCAACTTTTTTTATT+TGG - 57363:13422-13441 MS.gene05978:intergenic 25.0%
!!! AAGTTGGTTGTTTTTGTTTA+GGG + 57363:13759-13778 MS.gene05978:intron 25.0%
!!! TTATGGTTTTGAATATAGAG+AGG + 57363:11820-11839 MS.gene05978:CDS 25.0%
!!! TTTCACGACACTTTTTTTTT+GGG + 57363:14137-14156 MS.gene05978:intron 25.0%
!!! TTTTCACGACACTTTTTTTT+TGG + 57363:14136-14155 MS.gene05978:intron 25.0%
AACATATGATGAGGATTTGA+AGG + 57363:12217-12236 MS.gene05978:CDS 30.0%
AACCTTATTACATGCAACAA+AGG - 57363:12592-12611 MS.gene05978:intergenic 30.0%
AAGCTTAACAATAACGAATG+TGG - 57363:13896-13915 MS.gene05978:intergenic 30.0%
AAGTGGCAAATCAAGAATTA+TGG + 57363:11803-11822 MS.gene05978:CDS 30.0%
AATAAAGTGGAAGAATCGAT+AGG - 57363:11627-11646 MS.gene05978:intergenic 30.0%
AATATCATACAAACCTCATC+TGG - 57363:13708-13727 MS.gene05978:intergenic 30.0%
AATCAGCAACAAATTGTTAC+CGG + 57363:11933-11952 MS.gene05978:CDS 30.0%
AATTCACCACTTACTCTAAT+AGG + 57363:12376-12395 MS.gene05978:intron 30.0%
AGATGCAAAAATCCAAAACT+GGG + 57363:12288-12307 MS.gene05978:CDS 30.0%
ATGGACATATTAGGTAAGTT+TGG + 57363:13157-13176 MS.gene05978:CDS 30.0%
ATTAGCATATGACCAAATAC+AGG - 57363:13351-13370 MS.gene05978:intergenic 30.0%
CTAACTTATTCACCATCTAT+TGG + 57363:12666-12685 MS.gene05978:intron 30.0%
CTCTAATTTCCACAATAAAG+TGG - 57363:11640-11659 MS.gene05978:intergenic 30.0%
CTTCACACTGACATTAATTT+GGG + 57363:12827-12846 MS.gene05978:CDS 30.0%
GAAACCAAAAACATATGATG+AGG + 57363:12208-12227 MS.gene05978:CDS 30.0%
GGTTTACATTATAATAAGCC+TGG + 57363:13809-13828 MS.gene05978:intron 30.0%
GTGAAAATATATCATGCACA+TGG - 57363:13861-13880 MS.gene05978:intergenic 30.0%
TACTGACAAAAGAAGATTGT+CGG + 57363:12553-12572 MS.gene05978:CDS 30.0%
TCTTCACACTGACATTAATT+TGG + 57363:12826-12845 MS.gene05978:CDS 30.0%
TGGTTGTAGTTATAGGTTTA+GGG + 57363:14303-14322 MS.gene05978:intron 30.0%
TTCCTTTGTTGCATGTAATA+AGG + 57363:12587-12606 MS.gene05978:CDS 30.0%
TTTCAGTTCAAAACTAAAGG+TGG + 57363:12504-12523 MS.gene05978:intron 30.0%
! AGGTAAGTTTGGAGTAATAA+TGG + 57363:13168-13187 MS.gene05978:CDS 30.0%
! ATATTCTCTTTTGTTCCATC+AGG + 57363:14420-14439 MS.gene05978:intron 30.0%
! TCAATGTTTCTGTTTACTTC+AGG - 57363:13642-13661 MS.gene05978:intergenic 30.0%
! TTACAACAAATGTTTTCTGG+TGG + 57363:12059-12078 MS.gene05978:CDS 30.0%
!! TCATGGGCTTATTTTTCTAT+GGG + 57363:13282-13301 MS.gene05978:CDS 30.0%
!! TGAAGGTATAGTTTTTACCT+CGG + 57363:12882-12901 MS.gene05978:intron 30.0%
!! TTATTTTTCTATGGGTCACT+GGG + 57363:13290-13309 MS.gene05978:CDS 30.0%
!!! AAGTTGTTTTTGTTTTAGCC+AGG - 57363:13830-13849 MS.gene05978:intergenic 30.0%
!!! ACTAGCTTTTTTTGTTTCTC+TGG + 57363:12635-12654 MS.gene05978:intron 30.0%
AAAACTATACCTTCATGTGC+CGG - 57363:12877-12896 MS.gene059779:intergenic 35.0%
AATAACTTTAGTACCGTACC+AGG - 57363:13951-13970 MS.gene05978:intergenic 35.0%
ATAATTAGAACTGGACGTAC+CGG + 57363:13564-13583 MS.gene05978:CDS 35.0%
ATATCACAGTTGATCCATTG+TGG - 57363:13124-13143 MS.gene05978:intergenic 35.0%
ATATGATGAGGATTTGAAGG+AGG + 57363:12220-12239 MS.gene05978:CDS 35.0%
ATGGTATTTGCACCTGTATT+TGG + 57363:13336-13355 MS.gene05978:intron 35.0%
ATTACATGCAACAAAGGAAC+CGG - 57363:12586-12605 MS.gene05978:intergenic 35.0%
CACAAATGCACATCAACAAA+AGG - 57363:12767-12786 MS.gene05978:intergenic 35.0%
CCTAATGTGGTTGTAGTTAT+AGG + 57363:14296-14315 MS.gene05978:intron 35.0%
CCTATAACTACAACCACATT+AGG - 57363:14299-14318 MS.gene05978:intergenic 35.0%
CTTAACAATAACGAATGTGG+AGG - 57363:13893-13912 MS.gene05978:intergenic 35.0%
CTTCAGCGAATAATTAGAAC+TGG + 57363:13555-13574 MS.gene05978:CDS 35.0%
CTTGGACTAAAAACCTAATG+TGG + 57363:14283-14302 MS.gene05978:intron 35.0%
GAAGAATCGATAGGTGAAAA+AGG - 57363:11618-11637 MS.gene05978:intergenic 35.0%
GAGATGCAAAAATCCAAAAC+TGG + 57363:12287-12306 MS.gene05978:CDS 35.0%
GATAATATGTGGATGTCACA+TGG + 57363:12017-12036 MS.gene05978:CDS 35.0%
GGCCAATATCTGATAATATG+TGG + 57363:12006-12025 MS.gene05978:CDS 35.0%
GTAATCAATTGAGTGGTGTA+AGG + 57363:14456-14475 MS.gene05978:CDS 35.0%
GTATAGCCTATTAGAGTAAG+TGG - 57363:12385-12404 MS.gene05978:intergenic 35.0%
GTGGTTGTAGTTATAGGTTT+AGG + 57363:14302-14321 MS.gene05978:intron 35.0%
GTGTAAGGTTAGTAGATGAA+GGG + 57363:14471-14490 MS.gene05978:CDS 35.0%
TACCAGCTAAAACCAATAGA+TGG - 57363:12681-12700 MS.gene05978:intergenic 35.0%
TAGTTTAACTATGCCTGGTA+CGG + 57363:13935-13954 MS.gene05978:intron 35.0%
TCGATTCTTCCACTTTATTG+TGG + 57363:11628-11647 MS.gene05978:CDS 35.0%
! GGGTTACAACAAATGTTTTC+TGG + 57363:12056-12075 MS.gene05978:CDS 35.0%
! GTTCTTTTCTTGATACTTGC+CGG + 57363:12855-12874 MS.gene05978:CDS 35.0%
! TCACAGCTTTTACTATACTC+TGG + 57363:12435-12454 MS.gene05978:intron 35.0%
! TCTCTTGGTAATCAATTGAG+TGG + 57363:14449-14468 MS.gene05978:CDS 35.0%
! TGCATTTGTGATCCTTTTCT+CGG + 57363:12777-12796 MS.gene05978:intron 35.0%
!! CTCATGGGCTTATTTTTCTA+TGG + 57363:13281-13300 MS.gene05978:CDS 35.0%
!! CTTATTTTTCTATGGGTCAC+TGG + 57363:13289-13308 MS.gene05978:CDS 35.0%
!! GAAAACATTTGTTGTAACCC+TGG - 57363:12056-12075 MS.gene05978:intergenic 35.0%
!! TATTGTTCTGAAGTGGAACT+TGG + 57363:13094-13113 MS.gene05978:CDS 35.0%
!! TGATAATGGTGCTGTTGAAT+TGG + 57363:11767-11786 MS.gene05978:CDS 35.0%
!! TTGGAAGAGTTTGTTGTAAG+TGG + 57363:11786-11805 MS.gene05978:CDS 35.0%
AAAATGAACCTGCCGAGAAA+AGG - 57363:12792-12811 MS.gene059779:intergenic 40.0%
AACGTGTTGAGGAGATCATT+TGG + 57363:13517-13536 MS.gene05978:CDS 40.0%
AACTCCAGCTTTCTTGTTCT+TGG - 57363:14074-14093 MS.gene05978:intergenic 40.0%
AAGTCCAAGAACAAGAAAGC+TGG + 57363:14067-14086 MS.gene05978:CDS 40.0%
AATCCAACATAAGAACTCCG+AGG - 57363:12902-12921 MS.gene05978:intergenic 40.0%
AATTCAGAAACCGACTGCAA+GGG + 57363:12328-12347 MS.gene05978:CDS 40.0%
ACATTGTCTCGTTGGGATAA+AGG + 57363:13611-13630 MS.gene05978:CDS 40.0%
ACGTGTTGAGGAGATCATTT+GGG + 57363:13518-13537 MS.gene05978:CDS 40.0%
AGATGTATCCTTTGTTGGAG+AGG + 57363:14042-14061 MS.gene05978:intron 40.0%
AGGAAATTCTCTCAAGAGAC+GGG - 57363:11847-11866 MS.gene05978:intergenic 40.0%
AGGTCAATGGCAGATGATAA+TGG + 57363:11753-11772 MS.gene05978:CDS 40.0%
ATACTACTCCCTGATGCATT+TGG - 57363:12173-12192 MS.gene05978:intergenic 40.0%
ATGTTATTGTCGCTGAAGTC+CGG + 57363:13667-13686 MS.gene05978:CDS 40.0%
CAAAACTAAAGGTGGTTCTC+AGG + 57363:12512-12531 MS.gene05978:CDS 40.0%
CAGGAAATTCTCTCAAGAGA+CGG - 57363:11848-11867 MS.gene05978:intergenic 40.0%
CATTGTCTCGTTGGGATAAA+GGG + 57363:13612-13631 MS.gene05978:CDS 40.0%
CCAACAAAGGATACATCTGT+AGG - 57363:14040-14059 MS.gene05978:intergenic 40.0%
CCTACAGATGTATCCTTTGT+TGG + 57363:14037-14056 MS.gene05978:intron 40.0%
GACTTCAGCGACAATAACAT+CGG - 57363:13667-13686 MS.gene05978:intergenic 40.0%
GCAAAAATCCAAAACTGGGA+AGG + 57363:12292-12311 MS.gene05978:CDS 40.0%
GGAGGATTTGAAGGAATTTG+AGG + 57363:12238-12257 MS.gene05978:CDS 40.0%
GGATTTGAAGGAGGATTTGA+AGG + 57363:12229-12248 MS.gene05978:CDS 40.0%
GGTGTAAGGTTAGTAGATGA+AGG + 57363:14470-14489 MS.gene05978:CDS 40.0%
GTTCTGCAGCTTAGAACTTT+GGG + 57363:13488-13507 MS.gene05978:intron 40.0%
TAATTCAGAAACCGACTGCA+AGG + 57363:12327-12346 MS.gene05978:CDS 40.0%
TGTTCTGCAGCTTAGAACTT+TGG + 57363:13487-13506 MS.gene05978:intron 40.0%
TTACCTCGGAGTTCTTATGT+TGG + 57363:12896-12915 MS.gene05978:intron 40.0%
TTCTGCAGCTTAGAACTTTG+GGG + 57363:13489-13508 MS.gene05978:intron 40.0%
TTGGGGATATAAACGTGTTG+AGG + 57363:13506-13525 MS.gene05978:CDS 40.0%
! AGAGAGCACAACTCAAACAT+AGG - 57363:12949-12968 MS.gene05978:intergenic 40.0%
! GATTGGGGTCGATTATTTTC+TGG + 57363:14190-14209 MS.gene05978:intron 40.0%
! TACGAATGTGAACGGTGTTA+TGG + 57363:11959-11978 MS.gene05978:CDS 40.0%
! TCAGATATTGGCCTCAAAAC+TGG - 57363:11999-12018 MS.gene05978:intergenic 40.0%
! TGATTTGCCTCCAACAATGA+CGG + 57363:13024-13043 MS.gene05978:CDS 40.0%
! TTCTCTTTTGTTCCATCAGG+TGG + 57363:14423-14442 MS.gene05978:intron 40.0%
! TTGCAGTTGAGATAGCTTTG+AGG + 57363:11733-11752 MS.gene05978:CDS 40.0%
!! ACGAATGTGAACGGTGTTAT+GGG + 57363:11960-11979 MS.gene05978:CDS 40.0%
!! CAACAAATGTTTTCTGGTGG+TGG + 57363:12062-12081 MS.gene05978:CDS 40.0%
!! TACAAACCTCATCTGGCTTT+CGG - 57363:13701-13720 MS.gene05978:intergenic 40.0%
!! TGAGATAGCTTTGAGGTCAA+TGG + 57363:11740-11759 MS.gene05978:CDS 40.0%
!! TGCTGAGTATTGTTCTGAAG+TGG + 57363:13087-13106 MS.gene05978:CDS 40.0%
!!! CACCATCTATTGGTTTTAGC+TGG + 57363:12676-12695 MS.gene05978:intron 40.0%
AATAATGGCTGATCCACCGT+GGG + 57363:13183-13202 MS.gene05978:CDS 45.0%
ACCGGTAGTACGAATGTGAA+CGG + 57363:11951-11970 MS.gene05978:CDS 45.0%
ACCGTTCACATTCGTACTAC+CGG - 57363:11955-11974 MS.gene05978:intergenic 45.0%
AGCAAGGAACATTGTCTCGT+TGG + 57363:13603-13622 MS.gene05978:CDS 45.0%
ATTCACATGGAGCTGCCTTA+TGG + 57363:13208-13227 MS.gene05978:CDS 45.0%
ATTGGGAGTCTATGCATCGA+CGG - 57363:12146-12165 MS.gene05978:intergenic 45.0%
CAAACAAGGAGTCCATTTGC+CGG + 57363:14593-14612 MS.gene05978:CDS 45.0%
CAATAACGAATGTGGAGGAG+AGG - 57363:13888-13907 MS.gene05978:intergenic 45.0%
CAATGGAACTTGGACGAGAA+TGG + 57363:13317-13336 MS.gene05978:CDS 45.0%
CTGCAAAATGAGTCGAGTCT+CGG + 57363:11891-11910 MS.gene05978:CDS 45.0%
GATTTGCCTCCAACAATGAC+GGG + 57363:13025-13044 MS.gene05978:CDS 45.0%
GCAAGGAACATTGTCTCGTT+GGG + 57363:13604-13623 MS.gene05978:CDS 45.0%
GCATGCACAATACTCATGCA+GGG + 57363:14102-14121 MS.gene05978:CDS 45.0%
GCTATCTCAACTGCAAGTGT+CGG - 57363:11729-11748 MS.gene05978:intergenic 45.0%
GGACTTATCCTCTCCAACAA+AGG - 57363:14053-14072 MS.gene05978:intergenic 45.0%
GTCATTGTTGGAGGCAAATC+AGG - 57363:13025-13044 MS.gene05978:intergenic 45.0%
TAAGGCAGCTTATCCAGATG+TGG + 57363:14508-14527 MS.gene05978:CDS 45.0%
TAATAATGGCTGATCCACCG+TGG + 57363:13182-13201 MS.gene05978:CDS 45.0%
TCATCCGCCATTGTTCCATA+AGG - 57363:13226-13245 MS.gene05978:intergenic 45.0%
TCGATGCATAGACTCCCAAT+GGG + 57363:12146-12165 MS.gene05978:CDS 45.0%
TGTTATTGTCGCTGAAGTCC+GGG + 57363:13668-13687 MS.gene05978:CDS 45.0%
TTGGAGGCAAATCAGGTGTT+GGG - 57363:13018-13037 MS.gene05978:intergenic 45.0%
! AGTGGACTTTGATTCTGTGC+CGG - 57363:14615-14634 MS.gene05978:intergenic 45.0%
! CAAAACTGGGAAGGAGCTTT+TGG + 57363:12301-12320 MS.gene05978:CDS 45.0%
! CAAAAGCTCCTTCCCAGTTT+TGG - 57363:12303-12322 MS.gene05978:intergenic 45.0%
! CTAGTGTTGCTGCTCAAACA+AGG + 57363:14579-14598 MS.gene05978:CDS 45.0%
! TGCTGATGATGTGCAGTTTC+AGG - 57363:11867-11886 MS.gene05978:intergenic 45.0%
! TGGAACTTGGTGAACCACAA+TGG + 57363:13107-13126 MS.gene05978:CDS 45.0%
! TTTGATTCTGTGCCGGCAAA+TGG - 57363:14608-14627 MS.gene05978:intergenic 45.0%
! TTTGTGATCCTTTTCTCGGC+AGG + 57363:12781-12800 MS.gene05978:intron 45.0%
!!! ACGCTGCTGTTTTAGTGGTT+TGG - 57363:13068-13087 MS.gene05978:intergenic 45.0%
!!! CGCTGCTGTTTTAGTGGTTT+GGG - 57363:13067-13086 MS.gene05978:intergenic 45.0%
!!! TGCTGTTTTAGTGGTTTGGG+AGG - 57363:13064-13083 MS.gene05978:intergenic 45.0%
!!! TGTTTTAGTGGTTTGGGAGG+AGG - 57363:13061-13080 MS.gene05978:intergenic 45.0%
AAAGCCGCACTTCAAGAGCT+TGG + 57363:11687-11706 MS.gene05978:CDS 50.0%
AACAAGCCGAAAGCCAGATG+AGG + 57363:13692-13711 MS.gene05978:CDS 50.0%
AAGCTGCCTTAAACCTTGCC+CGG - 57363:14499-14518 MS.gene05978:intergenic 50.0%
AATGAGTCGAGTCTCGGAGA+TGG + 57363:11897-11916 MS.gene05978:CDS 50.0%
ACCAAGAGACATCCACCTGA+TGG - 57363:14438-14457 MS.gene05978:intergenic 50.0%
ACCAGGACTAATGGGAATGG+TGG + 57363:12097-12116 MS.gene05978:CDS 50.0%
ACCTCCATAGCAGAAGCTCT+GGG - 57363:14554-14573 MS.gene05978:intergenic 50.0%
AGCAACTACCTCTGCTTCAG+AGG + 57363:14652-14671 MS.gene05978:CDS 50.0%
AGCACCAGGACTAATGGGAA+TGG + 57363:12094-12113 MS.gene05978:CDS 50.0%
AGCTCCATGTGAATGTCCCA+CGG - 57363:13202-13221 MS.gene05978:intergenic 50.0%
ATGCAACAAAGGAACCGGTC+TGG - 57363:12581-12600 MS.gene05978:intergenic 50.0%
CAATGGGGCCAAATGCATCA+GGG + 57363:12162-12181 MS.gene05978:CDS 50.0%
CGATGCATAGACTCCCAATG+GGG + 57363:12147-12166 MS.gene05978:CDS 50.0%
CGCATGCACAATACTCATGC+AGG + 57363:14101-14120 MS.gene05978:CDS 50.0%
CTGATGCATTTGGCCCCATT+GGG - 57363:12163-12182 MS.gene05978:intergenic 50.0%
GCACAATACTCATGCAGGGT+TGG + 57363:14106-14125 MS.gene05978:intron 50.0%
GCTGCCTTATGGAACAATGG+CGG + 57363:13219-13238 MS.gene05978:CDS 50.0%
GGAGCTGCCTTATGGAACAA+TGG + 57363:13216-13235 MS.gene05978:CDS 50.0%
GGTTAGTAGATGAAGGGCTC+CGG + 57363:14477-14496 MS.gene05978:CDS 50.0%
GTCGATGCATAGACTCCCAA+TGG + 57363:12145-12164 MS.gene05978:CDS 50.0%
GTTAGTAGATGAAGGGCTCC+GGG + 57363:14478-14497 MS.gene05978:CDS 50.0%
GTTGGAGGCAAATCAGGTGT+TGG - 57363:13019-13038 MS.gene05978:intergenic 50.0%
GTTGTAACCCTGGCATGTGA+GGG - 57363:12046-12065 MS.gene05978:intergenic 50.0%
TACCTCCATAGCAGAAGCTC+TGG - 57363:14555-14574 MS.gene05978:intergenic 50.0%
TACCTCTGCTTCAGAGGAGA+AGG + 57363:14658-14677 MS.gene05978:CDS 50.0%
TCCACCAAGCTCTTGAAGTG+CGG - 57363:11694-11713 MS.gene05978:intergenic 50.0%
TCCATCAGGTGGATGTCTCT+TGG + 57363:14434-14453 MS.gene05978:intron 50.0%
TCCCTGCTCTGCAAACTCAT+GGG + 57363:13266-13285 MS.gene05978:CDS 50.0%
TGATACTTGCCGGCACATGA+AGG + 57363:12865-12884 MS.gene05978:CDS 50.0%
TGTTGTAACCCTGGCATGTG+AGG - 57363:12047-12066 MS.gene05978:intergenic 50.0%
! AAGTGCGGCTTTGTCTTGTG+GGG - 57363:11679-11698 MS.gene05978:intergenic 50.0%
! AGCTTGGTGGAGATTCAGGA+GGG + 57363:11703-11722 MS.gene05978:CDS 50.0%
! CAAGAGCTTGGTGGAGATTC+AGG + 57363:11699-11718 MS.gene05978:CDS 50.0%
! CCTTGCTGTGATTGAGCCAA+TGG - 57363:13590-13609 MS.gene05978:intergenic 50.0%
! GAAGTGCGGCTTTGTCTTGT+GGG - 57363:11680-11699 MS.gene05978:intergenic 50.0%
! TCTGAAGCAGAGGTAGTTGC+TGG - 57363:14653-14672 MS.gene05978:intergenic 50.0%
! TGAAGTGCGGCTTTGTCTTG+TGG - 57363:11681-11700 MS.gene05978:intergenic 50.0%
! TTTAGTGGTTTGGGAGGAGG+AGG - 57363:13058-13077 MS.gene05978:intergenic 50.0%
!! AACGGTGTTATGGGTGCGAT+GGG + 57363:11969-11988 MS.gene05978:CDS 50.0%
!! CCATTGGCTCAATCACAGCA+AGG + 57363:13587-13606 MS.gene05978:CDS 50.0%
!!! GTTTTCTGGTGGTGGACCAA+GGG + 57363:12070-12089 MS.gene05978:CDS 50.0%
!!! TCAGCACGCTGCTGTTTTAG+TGG - 57363:13073-13092 MS.gene05978:intergenic 50.0%
!!! TGTTTTCTGGTGGTGGACCA+AGG + 57363:12069-12088 MS.gene05978:CDS 50.0%
!!! TTTTCTGGTGGTGGACCAAG+GGG + 57363:12071-12090 MS.gene05978:CDS 50.0%
ACCTCCCAGAGCTTCTGCTA+TGG + 57363:14547-14566 MS.gene05978:CDS 55.0%
ACTGGGCGTGCAATGGAACT+TGG + 57363:13307-13326 MS.gene05978:CDS 55.0%
AGCCCATGAGTTTGCAGAGC+AGG - 57363:13271-13290 MS.gene05978:intergenic 55.0%
ATGGTGACCCTCACATGCCA+GGG + 57363:12036-12055 MS.gene05978:CDS 55.0%
ATTAGTCCTGGTGCTCCCCT+TGG - 57363:12089-12108 MS.gene05978:intergenic 55.0%
CCAATGGGGCCAAATGCATC+AGG + 57363:12161-12180 MS.gene05978:CDS 55.0%
CCTGATGCATTTGGCCCCAT+TGG - 57363:12164-12183 MS.gene05978:intergenic 55.0%
GAAGGCGATGGTCATTGACG+TGG + 57363:14676-14695 MS.gene05978:CDS 55.0%
GCCACCATTCCCATTAGTCC+TGG - 57363:12101-12120 MS.gene05978:intergenic 55.0%
GCCCATGAGTTTGCAGAGCA+GGG - 57363:13270-13289 MS.gene05978:intergenic 55.0%
GCTGTGATTGAGCCAATGGC+CGG - 57363:13586-13605 MS.gene05978:intergenic 55.0%
GGCAGCTTATCCAGATGTGG+AGG + 57363:14511-14530 MS.gene05978:CDS 55.0%
GTCCCTGCTCTGCAAACTCA+TGG + 57363:13265-13284 MS.gene05978:CDS 55.0%
GTGTTATGGGTGCGATGGGA+AGG + 57363:11973-11992 MS.gene05978:CDS 55.0%
TCAGAAACCGACTGCAAGGG+AGG + 57363:12331-12350 MS.gene05978:CDS 55.0%
TCCACCGTGGGACATTCACA+TGG + 57363:13195-13214 MS.gene05978:CDS 55.0%
TCCATGTGAATGTCCCACGG+TGG - 57363:13199-13218 MS.gene05978:intergenic 55.0%
TCCCAGAGCTTCTGCTATGG+AGG + 57363:14550-14569 MS.gene05978:CDS 55.0%
TGCTTCAGAGGAGAAGGCGA+TGG + 57363:14664-14683 MS.gene05978:CDS 55.0%
! AGAGCACCCGTCATTGTTGG+AGG - 57363:13034-13053 MS.gene05978:intergenic 55.0%
! CGATGGGAAGGCCAGTTTTG+AGG + 57363:11985-12004 MS.gene05978:CDS 55.0%
! CTGGCTTTCGGCTTGTTTCC+CGG - 57363:13689-13708 MS.gene05978:intergenic 55.0%
! GAGCTTGGTGGAGATTCAGG+AGG + 57363:11702-11721 MS.gene05978:CDS 55.0%
!! AAGGGGAGCACCAGGACTAA+TGG + 57363:12088-12107 MS.gene05978:CDS 55.0%
!! AGGGGAGCACCAGGACTAAT+GGG + 57363:12089-12108 MS.gene05978:CDS 55.0%
!! GAACGGTGTTATGGGTGCGA+TGG + 57363:11968-11987 MS.gene05978:CDS 55.0%
!! GGAAGAGCACCCGTCATTGT+TGG - 57363:13037-13056 MS.gene05978:intergenic 55.0%
!! TCCATAGCAGAAGCTCTGGG+AGG - 57363:14551-14570 MS.gene05978:intergenic 55.0%
ACAGCAGCCTCCCTTGCAGT+CGG - 57363:12341-12360 MS.gene05978:intergenic 60.0%
AGGGCTCCGGGCAAGGTTTA+AGG + 57363:14490-14509 MS.gene05978:CDS 60.0%
ATGGGTCACTGGGCGTGCAA+TGG + 57363:13300-13319 MS.gene05978:CDS 60.0%
CATGGTGACCCTCACATGCC+AGG + 57363:12035-12054 MS.gene05978:CDS 60.0%
GAAGATTGTCGGCGCCAGAC+CGG + 57363:12564-12583 MS.gene05978:CDS 60.0%
GAGGTAGTTGCTGGAGCTGC+AGG - 57363:14644-14663 MS.gene05978:intergenic 60.0%
GCCGCACTTCAAGAGCTTGG+TGG + 57363:11690-11709 MS.gene05978:CDS 60.0%
GGAATGGTGGCTGCACAGAG+AGG + 57363:12110-12129 MS.gene05978:CDS 60.0%
GGAGGCTGCTGTAGCTGCTA+AGG + 57363:12349-12368 MS.gene05978:CDS 60.0%
TAGATGAAGGGCTCCGGGCA+AGG + 57363:14483-14502 MS.gene05978:CDS 60.0%
! GAACTGGACGTACCGGCCAT+TGG + 57363:13571-13590 MS.gene05978:CDS 60.0%
!! CGCCTTCTCCTCTGAAGCAG+AGG - 57363:14663-14682 MS.gene05978:intergenic 60.0%
!! GAAGCTCTGGGAGGTGATGC+TGG - 57363:14542-14561 MS.gene05978:intergenic 60.0%
GCTGGCTGCACCTCCACATC+TGG - 57363:14524-14543 MS.gene05978:intergenic 65.0%
TGGAGCTGCAGGCTCAGCAG+TGG - 57363:14633-14652 MS.gene05978:intergenic 65.0%
!! GGTGGACCAAGGGGAGCACC+AGG + 57363:12080-12099 MS.gene05978:CDS 70.0%


Chromosome Type Strat End Strand Name
57363 gene 11585 14709 11585 ID=MS.gene05978
57363 mRNA 11585 14709 11585 ID=MS.gene05978.t1;Parent=MS.gene05978
57363 exon 11585 12370 11585 ID=MS.gene05978.t1.exon1;Parent=MS.gene05978.t1
57363 CDS 11585 12370 11585 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
57363 exon 12510 12608 12510 ID=MS.gene05978.t1.exon2;Parent=MS.gene05978.t1
57363 CDS 12510 12608 12510 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
57363 exon 12803 12886 12803 ID=MS.gene05978.t1.exon3;Parent=MS.gene05978.t1
57363 CDS 12803 12886 12803 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
57363 exon 12986 13338 12986 ID=MS.gene05978.t1.exon4;Parent=MS.gene05978.t1
57363 CDS 12986 13338 12986 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
57363 exon 13497 13713 13497 ID=MS.gene05978.t1.exon5;Parent=MS.gene05978.t1
57363 CDS 13497 13713 13497 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
57363 exon 14044 14123 14044 ID=MS.gene05978.t1.exon6;Parent=MS.gene05978.t1
57363 CDS 14044 14123 14044 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
57363 exon 14442 14709 14442 ID=MS.gene05978.t1.exon7;Parent=MS.gene05978.t1
57363 CDS 14442 14709 14442 ID=cds.MS.gene05978.t1;Parent=MS.gene05978.t1
Gene Sequence

>MS.gene05978

ATGGTTGCTGTTTGTCTTTTAAGTCGAGTACCTTTTTCACCTATCGATTCTTCCACTTTATTGTGGAAATTAGAGAATGATCAAACGGTTACCCCACAAGACAAAGCCGCACTTCAAGAGCTTGGTGGAGATTCAGGAGGGCCGACACTTGCAGTTGAGATAGCTTTGAGGTCAATGGCAGATGATAATGGTGCTGTTGAATTGGAAGAGTTTGTTGTAAGTGGCAAATCAAGAATTATGGTTTTGAATATAGAGAGGACCCGTCTCTTGAGAGAATTTCCTGAAACTGCACATCATCAGCAGCAGCTGCAAAATGAGTCGAGTCTCGGAGATGGTAATATGAATCAAAATCAGCAACAAATTGTTACCGGTAGTACGAATGTGAACGGTGTTATGGGTGCGATGGGAAGGCCAGTTTTGAGGCCAATATCTGATAATATGTGGATGTCACATGGTGACCCTCACATGCCAGGGTTACAACAAATGTTTTCTGGTGGTGGACCAAGGGGAGCACCAGGACTAATGGGAATGGTGGCTGCACAGAGAGGTATAGTTATTCCGTCGATGCATAGACTCCCAATGGGGCCAAATGCATCAGGGAGTAGTATTAATGCAATGCAACAGAAACCAAAAACATATGATGAGGATTTGAAGGAGGATTTGAAGGAATTTGAGGCCATAATTAATAAGAAATCGTTTAGGGAGATGCAAAAATCCAAAACTGGGAAGGAGCTTTTGGATTTAATTCAGAAACCGACTGCAAGGGAGGCTGCTGTAGCTGCTAAGGTTCAAATTCACCACTTACTCTAATAGGCTATACACTCAAATTTCATTTTTGAATTTTGATTATTCACAGCTTTTACTATACTCTGGCATTTCGAACAGTTTAATCTAATTCTGCTTGTTTAAATGTATTATTTTTCAGTTCAAAACTAAAGGTGGTTCTCAGGTGAAGCAATATTGTGACTTACTGACAAAAGAAGATTGTCGGCGCCAGACCGGTTCCTTTGTTGCATGTAATAAGGTTAATGACAAGAACAATATTTTATTACTAGCTTTTTTTGTTTCTCTGGTTTCATTTCTAACTTATTCACCATCTATTGGTTTTAGCTGGTATACTAAGACATATGATTTTCAACTAATCAAACTATGAAAATTGGTACGGACACTTTTATTTAGCCTTTTGTTGATGTGCATTTGTGATCCTTTTCTCGGCAGGTTCATTTTAGACGAATCATTGCTCTTCACACTGACATTAATTTGGGAGACTGTTCTTTTCTTGATACTTGCCGGCACATGAAGGTATAGTTTTTACCTCGGAGTTCTTATGTTGGATTTTCTCTTCATTTTAGTTATTTTGTCCTATGTTTGAGTTGTGCTCTCTTTTTTGTCCTTTGATAGACATGTAAATATGTTCACTATGAGTATGACCCAACACCTGATTTGCCTCCAACAATGACGGGTGCTCTTCCTCCTCCTCCCAAACCACTAAAACAGCAGCGTGCTGAGTATTGTTCTGAAGTGGAACTTGGTGAACCACAATGGATCAACTGTGATATACGTAACTTTAGAATGGACATATTAGGTAAGTTTGGAGTAATAATGGCTGATCCACCGTGGGACATTCACATGGAGCTGCCTTATGGAACAATGGCGGATGATGAAATGCGCACTCTTAATGTCCCTGCTCTGCAAACTCATGGGCTTATTTTTCTATGGGTCACTGGGCGTGCAATGGAACTTGGACGAGAATGGTATTTGCACCTGTATTTGGTCATATGCTAATTTTTTGTTTTCATTAAAAAAAAATCATCTGATATTCTGATTAGCATAACCAAATAAAAAAAGTTGAGGCTTCTTTTTACTAATAATCTGCATTTGGCTTGCACATATTTCGTATTGTGTTCTGCAGCTTAGAACTTTGGGGATATAAACGTGTTGAGGAGATCATTTGGGTGAAAACAAATCAACTTCAGCGAATAATTAGAACTGGACGTACCGGCCATTGGCTCAATCACAGCAAGGAACATTGTCTCGTTGGGATAAAGGGTAGTCCTGAAGTAAACAGAAACATTGACACCGATGTTATTGTCGCTGAAGTCCGGGAAACAAGCCGAAAGCCAGATGAGGTTTGTATGATATTCAACGAACTTTTTCACTAACAAGTTATTGAAAAGTTGGTTGTTTTTGTTTAGGGTTCCTTAAAAATGTTATTGAAAAGAAGGGTTTACATTATAATAAGCCTGGCTAAAACAAAAACAACTTGCTAACAGCCATGTGCATGATATATTTTCACTTTTCCTCTCCTCCACATTCGTTATTGTTAAGCTTGCATGTTCCATCTTTTAAATAGTTTAACTATGCCTGGTACGGTACTAAAGTTATTCTACCATTTGAGTGTTCAAATTTAAGTCTTTCATATGCGTAACAATTTCAAAATTGTCAATTTATTCCTACAGATGTATCCTTTGTTGGAGAGGATAAGTCCAAGAACAAGAAAGCTGGAGTTGTTTGCTCGCATGCACAATACTCATGCAGGGTTGGTTTTGAATTTTCACGACACTTTTTTTTTGGGAGTTTTTTAATGGTAATCTTAAAATTGTTTGATTGGGGTCGATTATTTTCTGGATTTGAAATGAGTCTTGATGCTACGTAAGTGAAGCTCACTTGATAATGTTCTATATCAATTAAATGATCTCTTGGACTAAAAACCTAATGTGGTTGTAGTTATAGGTTTAGGGCAAAATTTCATCCATAGAAATCATAAACTGTTTTTTATGGTGTTCTTTATTATTTGATATTTGAAGTCATCCAAAGTAATCTTAAGCTGTTATAATATTCTCTTTTGTTCCATCAGGTGGATGTCTCTTGGTAATCAATTGAGTGGTGTAAGGTTAGTAGATGAAGGGCTCCGGGCAAGGTTTAAGGCAGCTTATCCAGATGTGGAGGTGCAGCCAGCATCACCTCCCAGAGCTTCTGCTATGGAGGTAGACTCTAGTGTTGCTGCTCAAACAAGGAGTCCATTTGCCGGCACAGAATCAAAGTCCACTGCTGAGCCTGCAGCTCCAGCAACTACCTCTGCTTCAGAGGAGAAGGCGATGGTCATTGACGTGGACACTAACTAA

Protein sequence

>MS.gene05978.t1

MVAVCLLSRVPFSPIDSSTLLWKLENDQTVTPQDKAALQELGGDSGGPTLAVEIALRSMADDNGAVELEEFVVSGKSRIMVLNIERTRLLREFPETAHHQQQLQNESSLGDGNMNQNQQQIVTGSTNVNGVMGAMGRPVLRPISDNMWMSHGDPHMPGLQQMFSGGGPRGAPGLMGMVAAQRGIVIPSMHRLPMGPNASGSSINAMQQKPKTYDEDLKEDLKEFEAIINKKSFREMQKSKTGKELLDLIQKPTAREAAVAAKFKTKGGSQVKQYCDLLTKEDCRRQTGSFVACNKVHFRRIIALHTDINLGDCSFLDTCRHMKTCKYVHYEYDPTPDLPPTMTGALPPPPKPLKQQRAEYCSEVELGEPQWINCDIRNFRMDILGKFGVIMADPPWDIHMELPYGTMADDEMRTLNVPALQTHGLIFLWVTGRAMELGRECLELWGYKRVEEIIWVKTNQLQRIIRTGRTGHWLNHSKEHCLVGIKGSPEVNRNIDTDVIVAEVRETSRKPDEMYPLLERISPRTRKLELFARMHNTHAGWMSLGNQLSGVRLVDEGLRARFKAAYPDVEVQPASPPRASAMEVDSSVAAQTRSPFAGTESKSTAEPAAPATTSASEEKAMVIDVDTN