Alfalfa Gene Editing Database
Nr:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61520.t1 | XP_003609751.2 | 90.8 | 905 | 42 | 3 | 1 | 864 | 1 | 905 | 0.00E+00 | 1551.2 |
Swissprot:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61520.t1 | O23463 | 52.4 | 913 | 377 | 12 | 3 | 864 | 1 | 906 | 4.8e-237 | 822.4 |
Trembl:
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61520.t1 | G7JMT3 | 90.8 | 905 | 42 | 3 | 1 | 864 | 1 | 905 | 0.0e+00 | 1551.2 |
TFs/TRs:
Gene ID | Type | Classification |
---|---|---|
MS.gene61520.t1 | TF | CAMTA |
Protein Kinases:
Gene ID | Type | Classification |
---|
Network:
Co-expression Network:
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
MS.gene06119 | MS.gene61520 | 0.802061 | 6.71E-49 | -1.69E-46 |
PPI:
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61520.t1 | MTR_4g121840 | 93.039 | 905 | 22 | 3 | 1 | 864 | 1 | 905 | 0.0 | 1731 |
MS.gene61520.t1 | MTR_4g121840 | 91.559 | 853 | 31 | 3 | 53 | 864 | 23 | 875 | 0.0 | 1596 |
MS.gene61520.t1 | MTR_2g034650 | 67.735 | 905 | 238 | 6 | 2 | 864 | 1 | 893 | 0.0 | 1245 |
MS.gene61520.t1 | MTR_2g008840 | 30.291 | 997 | 514 | 27 | 25 | 856 | 13 | 993 | 3.99e-112 | 368 |
MS.gene61520.t1 | MTR_2g008840 | 29.855 | 968 | 498 | 27 | 54 | 856 | 2 | 953 | 1.52e-102 | 341 |
MS.gene61520.t1 | MTR_2g008840 | 30.000 | 900 | 463 | 25 | 25 | 773 | 13 | 896 | 2.99e-94 | 316 |
MS.gene61520.t1 | MTR_8g090205 | 29.805 | 614 | 356 | 13 | 310 | 856 | 275 | 880 | 4.57e-69 | 246 |
MS.gene61520.t1 | MTR_8g090205 | 29.805 | 614 | 356 | 13 | 310 | 856 | 275 | 880 | 6.19e-69 | 246 |
MS.gene61520.t1 | MTR_8g090205 | 29.805 | 614 | 356 | 13 | 310 | 856 | 434 | 1039 | 2.13e-68 | 246 |
MS.gene61520.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 26 | 155 | 12 | 141 | 2.72e-41 | 164 |
MS.gene61520.t1 | MTR_8g090205 | 29.805 | 614 | 356 | 13 | 310 | 856 | 432 | 1037 | 2.83e-68 | 246 |
MS.gene61520.t1 | MTR_8g090205 | 55.725 | 131 | 58 | 0 | 25 | 155 | 9 | 139 | 2.49e-41 | 164 |
MS.gene61520.t1 | MTR_8g090205 | 29.805 | 614 | 356 | 13 | 310 | 856 | 434 | 1039 | 2.90e-68 | 246 |
MS.gene61520.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 26 | 155 | 12 | 141 | 2.68e-41 | 164 |
MS.gene61520.t1 | MTR_8g090205 | 29.805 | 614 | 356 | 13 | 310 | 856 | 432 | 1037 | 3.44e-68 | 246 |
MS.gene61520.t1 | MTR_8g090205 | 55.725 | 131 | 58 | 0 | 25 | 155 | 9 | 139 | 3.04e-41 | 164 |
MS.gene61520.t1 | MTR_8g080800 | 32.373 | 590 | 301 | 19 | 338 | 864 | 380 | 934 | 2.24e-66 | 239 |
MS.gene61520.t1 | MTR_8g080800 | 48.276 | 145 | 73 | 1 | 24 | 166 | 6 | 150 | 4.19e-39 | 157 |
MS.gene61520.t1 | MTR_3g085050 | 30.716 | 573 | 302 | 17 | 347 | 856 | 368 | 908 | 2.22e-60 | 221 |
MS.gene61520.t1 | MTR_3g085050 | 52.419 | 124 | 59 | 0 | 26 | 149 | 8 | 131 | 4.78e-38 | 154 |
MS.gene61520.t1 | MTR_3g085050 | 30.716 | 573 | 302 | 17 | 347 | 856 | 368 | 908 | 3.09e-60 | 221 |
MS.gene61520.t1 | MTR_3g085050 | 52.419 | 124 | 59 | 0 | 26 | 149 | 8 | 131 | 4.91e-38 | 154 |
MS.gene61520.t1 | MTR_4g094215 | 29.268 | 615 | 346 | 16 | 314 | 856 | 384 | 981 | 5.18e-58 | 216 |
MS.gene61520.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 25 | 148 | 13 | 136 | 5.48e-37 | 150 |
MS.gene61520.t1 | MTR_4g094215 | 29.268 | 615 | 346 | 16 | 314 | 856 | 384 | 981 | 6.31e-58 | 215 |
MS.gene61520.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 25 | 148 | 13 | 136 | 5.44e-37 | 150 |
MS.gene61520.t1 | MTR_8g090205 | 29.264 | 516 | 305 | 11 | 310 | 773 | 434 | 941 | 1.19e-53 | 202 |
MS.gene61520.t1 | MTR_8g090205 | 56.154 | 130 | 57 | 0 | 26 | 155 | 12 | 141 | 2.12e-41 | 164 |
MS.gene61520.t1 | MTR_4g094215 | 29.207 | 517 | 292 | 14 | 314 | 773 | 384 | 883 | 2.12e-42 | 167 |
MS.gene61520.t1 | MTR_4g094215 | 54.032 | 124 | 57 | 0 | 25 | 148 | 13 | 136 | 4.89e-37 | 150 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
MS.gene61520.t1 | AT3G16940 | 52.169 | 899 | 318 | 10 | 9 | 864 | 7 | 836 | 0.0 | 880 |
MS.gene61520.t1 | AT3G16940 | 51.481 | 878 | 314 | 10 | 30 | 864 | 1 | 809 | 0.0 | 843 |
MS.gene61520.t1 | AT3G16940 | 51.759 | 796 | 289 | 8 | 9 | 773 | 7 | 738 | 0.0 | 774 |
MS.gene61520.t1 | AT5G09410 | 29.499 | 939 | 539 | 18 | 25 | 856 | 16 | 938 | 4.69e-109 | 358 |
MS.gene61520.t1 | AT5G09410 | 28.646 | 960 | 538 | 19 | 25 | 856 | 75 | 1015 | 1.54e-100 | 337 |
MS.gene61520.t1 | AT2G22300 | 31.978 | 541 | 305 | 10 | 367 | 861 | 402 | 925 | 2.68e-66 | 239 |
MS.gene61520.t1 | AT2G22300 | 69.231 | 78 | 24 | 0 | 71 | 148 | 1 | 78 | 5.15e-29 | 125 |
MS.gene61520.t1 | AT2G22300 | 31.978 | 541 | 305 | 10 | 367 | 861 | 460 | 983 | 3.64e-66 | 240 |
MS.gene61520.t1 | AT2G22300 | 57.778 | 135 | 57 | 0 | 14 | 148 | 2 | 136 | 8.25e-45 | 175 |
MS.gene61520.t1 | AT2G22300 | 31.978 | 541 | 305 | 10 | 367 | 861 | 460 | 983 | 3.64e-66 | 240 |
MS.gene61520.t1 | AT2G22300 | 57.778 | 135 | 57 | 0 | 14 | 148 | 2 | 136 | 8.25e-45 | 175 |
MS.gene61520.t1 | AT5G64220 | 28.171 | 607 | 361 | 13 | 314 | 856 | 403 | 998 | 1.03e-60 | 224 |
MS.gene61520.t1 | AT5G64220 | 62.097 | 124 | 47 | 0 | 25 | 148 | 13 | 136 | 1.49e-44 | 174 |
MS.gene61520.t1 | AT5G64220 | 28.171 | 607 | 361 | 13 | 314 | 856 | 403 | 998 | 1.03e-60 | 224 |
MS.gene61520.t1 | AT5G64220 | 62.097 | 124 | 47 | 0 | 25 | 148 | 13 | 136 | 1.49e-44 | 174 |
MS.gene61520.t1 | AT5G09410 | 28.171 | 607 | 368 | 11 | 314 | 856 | 233 | 835 | 5.11e-60 | 220 |
MS.gene61520.t1 | AT5G09410 | 28.171 | 607 | 368 | 11 | 314 | 856 | 354 | 956 | 1.06e-59 | 221 |
MS.gene61520.t1 | AT5G09410 | 50.000 | 168 | 73 | 2 | 25 | 181 | 16 | 183 | 1.45e-40 | 162 |
MS.gene61520.t1 | AT1G67310 | 27.883 | 581 | 326 | 15 | 350 | 856 | 415 | 976 | 3.10e-54 | 204 |
MS.gene61520.t1 | AT1G67310 | 47.287 | 129 | 68 | 0 | 21 | 149 | 32 | 160 | 2.16e-36 | 149 |
Find 200 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TAACATCTACGAACAAAATT+TGG | 0.072421 | 8.3:-7223146 | None:intergenic |
CATCCATTTGTGTGCAATTT+TGG | 0.104350 | 8.3:+7226929 | MS.gene61520:CDS |
GTCATTGACCAAAGTGTTTA+AGG | 0.109944 | 8.3:-7225695 | None:intergenic |
GGAAATAAATGATGTCTTTA+AGG | 0.133359 | 8.3:-7226736 | None:intergenic |
CTAGATTTCCGGGATAAATT+TGG | 0.178425 | 8.3:+7226996 | MS.gene61520:CDS |
TTACTACCTTTGCTTGATTA+AGG | 0.188541 | 8.3:-7230922 | None:intergenic |
CAGGCTTATCGCTAGATTTC+CGG | 0.196850 | 8.3:+7226985 | MS.gene61520:CDS |
ATACAATGCAGGCTGCTTTC+AGG | 0.201311 | 8.3:+7230619 | MS.gene61520:intron |
GCATCTTTAGCTTGCGAAAA+TGG | 0.246405 | 8.3:-7226804 | None:intergenic |
GTAAGGTTCTCGGAATTTAC+TGG | 0.269930 | 8.3:-7230145 | None:intergenic |
CTTGAATCTTGATAGCTTGA+TGG | 0.274270 | 8.3:-7230446 | None:intergenic |
CAGATGGGGTCTACCGTTGC+TGG | 0.285148 | 8.3:+7226457 | MS.gene61520:CDS |
TTGTGTCTTCAGGGAGAAAA+TGG | 0.285192 | 8.3:+7229910 | MS.gene61520:intron |
GCATGATCCAGTAGCTTCTA+TGG | 0.288531 | 8.3:+7226581 | MS.gene61520:CDS |
AATCTCTACTTGAGCTTTGA+TGG | 0.290115 | 8.3:+7226507 | MS.gene61520:intron |
TGTAGTAGAGTTTGAATTTA+CGG | 0.298703 | 8.3:-7224590 | None:intergenic |
GCTCGTGAAGCCTCAGTTCA+TGG | 0.300887 | 8.3:-7225146 | None:intergenic |
TCAGTTGATGATTCTGCTCT+TGG | 0.301849 | 8.3:+7225781 | MS.gene61520:CDS |
GTAAGATTAAATACTTGTTC+TGG | 0.324933 | 8.3:-7225871 | None:intergenic |
CACACATTAGATTGGACTTT+GGG | 0.329782 | 8.3:-7226399 | None:intergenic |
TACTACCTTTGCTTGATTAA+GGG | 0.341554 | 8.3:-7230921 | None:intergenic |
TTTGAATTTACGGGAGTGAT+TGG | 0.343053 | 8.3:-7224580 | None:intergenic |
AGAAAGCGCAAGAAGATTAT+AGG | 0.344611 | 8.3:+7230885 | MS.gene61520:CDS |
GTTGCAACTTTGCTGTCAGC+TGG | 0.345081 | 8.3:+7229932 | MS.gene61520:CDS |
ACTTCTCTCGACACGTTCTT+CGG | 0.345176 | 8.3:-7230831 | None:intergenic |
CCTCGATGTTGCGAGCATTA+TGG | 0.346860 | 8.3:+7222367 | MS.gene61520:CDS |
AAAGTAACAACTTGGCTGAT+AGG | 0.349913 | 8.3:-7226537 | None:intergenic |
AAGGGGAATCAGACATGATT+TGG | 0.351252 | 8.3:-7225756 | None:intergenic |
AACATCTACGAACAAAATTT+GGG | 0.354515 | 8.3:-7223145 | None:intergenic |
CATCATTTATTTCCAATACT+TGG | 0.356488 | 8.3:+7226745 | MS.gene61520:CDS |
CTGTCAGAAGAAATAGATTC+AGG | 0.364565 | 8.3:+7224640 | MS.gene61520:CDS |
TTGGATGGACGGCTCTTCAT+TGG | 0.365957 | 8.3:+7227015 | MS.gene61520:CDS |
CACAGACCTCTTGTGTTTCA+CGG | 0.368339 | 8.3:-7223332 | None:intergenic |
CAAGCTAAAGATGCCCTGTT+TGG | 0.370069 | 8.3:+7226813 | MS.gene61520:CDS |
CTTCATTGGGCAGCATATTA+CGG | 0.371986 | 8.3:+7227029 | MS.gene61520:CDS |
GTAGTAGAGTTTGAATTTAC+GGG | 0.373399 | 8.3:-7224589 | None:intergenic |
AGGCTTATCGCTAGATTTCC+GGG | 0.376462 | 8.3:+7226986 | MS.gene61520:CDS |
GCTTAATACCGAGGAAGAAT+CGG | 0.378006 | 8.3:+7230748 | MS.gene61520:CDS |
ATTCATTGGCTTGACATTGA+TGG | 0.378984 | 8.3:-7222459 | None:intergenic |
GAACAAGGACGATGTGTTCC+AGG | 0.379575 | 8.3:-7223305 | None:intergenic |
AACTTACCGGGTCAACTTGT+TGG | 0.380648 | 8.3:+7221790 | MS.gene61520:CDS |
GATGATGGCAAATAACTTAC+CGG | 0.382750 | 8.3:+7221777 | MS.gene61520:CDS |
TTAGAAAAGATGGGCACAAC+TGG | 0.386039 | 8.3:+7222902 | MS.gene61520:CDS |
AATTTCTGCAGATGCATTGT+TGG | 0.386177 | 8.3:-7225524 | None:intergenic |
CATTAAGTATTGCCAAGTAT+TGG | 0.389662 | 8.3:-7226757 | None:intergenic |
ACGAGCTTAATACACTTGAA+TGG | 0.394137 | 8.3:+7225163 | MS.gene61520:CDS |
GTTGGATCCGTGACCAAGTT+TGG | 0.394480 | 8.3:-7229962 | None:intergenic |
AAGATACACTGGCAGCTTAC+CGG | 0.401008 | 8.3:+7230188 | MS.gene61520:CDS |
CTGCTGCATCGGCAGCTGTC+CGG | 0.405371 | 8.3:-7230207 | None:intergenic |
TGGCTTAGCAGCTTATCTTT+CGG | 0.408505 | 8.3:+7230042 | MS.gene61520:CDS |
CTTCGGAACTTTAGAAAAGA+TGG | 0.410510 | 8.3:+7222892 | MS.gene61520:CDS |
TATTGCTCACTGCAATTGGC+TGG | 0.411882 | 8.3:-7225567 | None:intergenic |
TTCAATGACATGAGCTTAGC+TGG | 0.412581 | 8.3:+7230085 | MS.gene61520:CDS |
TTGCAAAGTCAGGACAGCTT+TGG | 0.419514 | 8.3:+7225721 | MS.gene61520:CDS |
TTCTCTTCCATAGAAGCTAC+TGG | 0.423128 | 8.3:-7226588 | None:intergenic |
CTATGGAAGAGAAGAACAAC+TGG | 0.423755 | 8.3:+7226598 | MS.gene61520:CDS |
ATTCCAAAATTGCACACAAA+TGG | 0.426542 | 8.3:-7226932 | None:intergenic |
CGAGCTTAATACACTTGAAT+GGG | 0.429815 | 8.3:+7225164 | MS.gene61520:CDS |
AAGCATGGCATGAATCTCAT+TGG | 0.433333 | 8.3:-7222417 | None:intergenic |
GGGACCAAAACTGCATATGC+TGG | 0.433437 | 8.3:+7224661 | MS.gene61520:CDS |
GCTACTGGATCATGCAAAAC+AGG | 0.435079 | 8.3:-7226573 | None:intergenic |
CGCTGATCTTGCTTATACGA+GGG | 0.436160 | 8.3:+7230012 | MS.gene61520:CDS |
TCCACTACCAGAGATGAATA+TGG | 0.438348 | 8.3:-7225829 | None:intergenic |
CAACTTGGCTGATAGGGTTA+TGG | 0.443521 | 8.3:-7226530 | None:intergenic |
ACACACATTAGATTGGACTT+TGG | 0.444268 | 8.3:-7226400 | None:intergenic |
TGGCTCATGATACAGTTTCA+GGG | 0.447890 | 8.3:+7224553 | MS.gene61520:intron |
CTGCTCCTCGGTAAGGTTCT+CGG | 0.448811 | 8.3:-7230155 | None:intergenic |
ATACTATTGCTCACTGCAAT+TGG | 0.451657 | 8.3:-7225571 | None:intergenic |
GCGTTGGCGTTTAAAGAGAA+AGG | 0.452827 | 8.3:+7230709 | MS.gene61520:CDS |
AAGTAACAACTTGGCTGATA+GGG | 0.459430 | 8.3:-7226536 | None:intergenic |
TGTTTGACCGCAAGATGCTT+CGG | 0.463262 | 8.3:+7222875 | MS.gene61520:CDS |
CTTGTTGGATCAGAGATACA+TGG | 0.467564 | 8.3:+7221805 | MS.gene61520:CDS |
ACCACATACACACATTAGAT+TGG | 0.467840 | 8.3:-7226407 | None:intergenic |
CTTAATACCGAGGAAGAATC+GGG | 0.468527 | 8.3:+7230749 | MS.gene61520:CDS |
CTTCAGACAATTAGCAATCA+AGG | 0.472262 | 8.3:+7225622 | MS.gene61520:CDS |
ATTAAATACTTGTTCTGGAA+GGG | 0.472785 | 8.3:-7225866 | None:intergenic |
TTGCAACTTTGCTGTCAGCT+GGG | 0.472793 | 8.3:+7229933 | MS.gene61520:CDS |
ATGCAGAGGAGGAATTCTTT+CGG | 0.473903 | 8.3:+7230792 | MS.gene61520:CDS |
TGGATGGACGGCTCTTCATT+GGG | 0.477645 | 8.3:+7227016 | MS.gene61520:CDS |
AGCTGGGGCAAAGCCAAACT+TGG | 0.480001 | 8.3:+7229949 | MS.gene61520:CDS |
GACAGAATCCATGGTGCAGA+TGG | 0.481590 | 8.3:-7224622 | None:intergenic |
TGGAAATATCAGTGGCTCAC+TGG | 0.481619 | 8.3:+7230105 | MS.gene61520:CDS |
TCCTGCAGAAATTGTTCAGA+TGG | 0.489262 | 8.3:+7226441 | MS.gene61520:CDS |
TAATGAACCATATTCATCTC+TGG | 0.490693 | 8.3:+7225822 | MS.gene61520:CDS |
CTGATCTCCCGATTCTTCCT+CGG | 0.494626 | 8.3:-7230756 | None:intergenic |
TACTGATGTGTCCCCTGCGT+GGG | 0.495048 | 8.3:+7225891 | MS.gene61520:CDS |
GTCAGGACAGCTTTGGAATG+TGG | 0.495726 | 8.3:+7225728 | MS.gene61520:CDS |
CACGCATACAAGAAGCATAT+AGG | 0.496664 | 8.3:+7230230 | MS.gene61520:CDS |
TGTTGATTCCTTAAACACTT+TGG | 0.504390 | 8.3:+7225687 | MS.gene61520:CDS |
AGAGGTTTATGCGATGATGA+TGG | 0.505647 | 8.3:+7221762 | None:intergenic |
TACAACATAGATTCCGTACA+TGG | 0.506906 | 8.3:+7230394 | MS.gene61520:CDS |
CTTTGTCTCAAAATTGCGGA+AGG | 0.510652 | 8.3:-7230346 | None:intergenic |
CATAGAGCTGCTCCTCGGTA+AGG | 0.512844 | 8.3:-7230162 | None:intergenic |
GCTTATACGAGGGGTTATCA+TGG | 0.514631 | 8.3:+7230022 | MS.gene61520:CDS |
CTTCTTGCGCTTTCTTAGAA+CGG | 0.515603 | 8.3:-7230877 | None:intergenic |
AGATGAATATGGTTCATTAA+CGG | 0.515829 | 8.3:-7225818 | None:intergenic |
CCGGGATAAATTTGGATGGA+CGG | 0.516036 | 8.3:+7227004 | MS.gene61520:CDS |
AGCATGGCATGAATCTCATT+GGG | 0.516702 | 8.3:-7222416 | None:intergenic |
CAATGACAGATTGCAAAGTC+AGG | 0.517201 | 8.3:+7225711 | MS.gene61520:CDS |
ACCATATTCATCTCTGGTAG+TGG | 0.517334 | 8.3:+7225828 | MS.gene61520:CDS |
GATTAAATACTTGTTCTGGA+AGG | 0.517408 | 8.3:-7225867 | None:intergenic |
CTTTCTTTGTCTCAAAATTG+CGG | 0.517560 | 8.3:-7230350 | None:intergenic |
GAAAGGGCTTCCGTGGGCTC+CGG | 0.517612 | 8.3:+7230726 | MS.gene61520:CDS |
ATCCAACTCACCAAAACCCT+GGG | 0.517945 | 8.3:+7229978 | MS.gene61520:CDS |
ACGAGTTTCAACTTCAAATG+AGG | 0.518692 | 8.3:+7226622 | MS.gene61520:CDS |
ATCAGGTTGGTAATGAAGAA+AGG | 0.520019 | 8.3:+7223090 | MS.gene61520:intron |
GAGAAGTGTAATACGAGTGC+AGG | 0.521544 | 8.3:+7230847 | MS.gene61520:CDS |
CATGGATTCCACACATTGCA+AGG | 0.525083 | 8.3:+7221823 | MS.gene61520:CDS |
TTGTATGCGTGCTGCTGCAT+CGG | 0.525543 | 8.3:-7230218 | None:intergenic |
AGATTATAGGAGGATGAAGT+TGG | 0.526731 | 8.3:+7230898 | MS.gene61520:CDS |
TGCAACTTTGCTGTCAGCTG+GGG | 0.527062 | 8.3:+7229934 | MS.gene61520:CDS |
CGTTGGCGTTTAAAGAGAAA+GGG | 0.527109 | 8.3:+7230710 | MS.gene61520:CDS |
GGACCAAAACTGCATATGCT+GGG | 0.528427 | 8.3:+7224662 | MS.gene61520:CDS |
CCGCTGATCTTGCTTATACG+AGG | 0.533890 | 8.3:+7230011 | MS.gene61520:CDS |
CGGTATTAAGCCGGAGCCCA+CGG | 0.538463 | 8.3:-7230736 | None:intergenic |
TCAGGACAGCTTTGGAATGT+GGG | 0.540299 | 8.3:+7225729 | MS.gene61520:CDS |
ATTTCTTCTGACAGAATCCA+TGG | 0.540689 | 8.3:-7224631 | None:intergenic |
AGTATCACTTAGCAGACTAA+AGG | 0.541579 | 8.3:+7226698 | MS.gene61520:CDS |
AGATGGGGTCTACCGTTGCT+GGG | 0.542829 | 8.3:+7226458 | MS.gene61520:CDS |
CCTGCAGAAATTGTTCAGAT+GGG | 0.546206 | 8.3:+7226442 | MS.gene61520:CDS |
CTCTACGAATCTTCCATGTA+CGG | 0.546988 | 8.3:-7230407 | None:intergenic |
CCCATCTGAACAATTTCTGC+AGG | 0.547598 | 8.3:-7226442 | None:intergenic |
GAGGAGGAATTCTTTCGGAC+TGG | 0.547668 | 8.3:+7230797 | MS.gene61520:CDS |
TGTCAGAAGAAATAGATTCA+GGG | 0.548424 | 8.3:+7224641 | MS.gene61520:CDS |
ATTGGGCAGCATATTACGGC+AGG | 0.549580 | 8.3:+7227033 | MS.gene61520:CDS |
TTAAAGAGAAAGGGCTTCCG+TGG | 0.557276 | 8.3:+7230719 | MS.gene61520:CDS |
GACCATGTGCATAATATACA+TGG | 0.559880 | 8.3:-7223115 | None:intergenic |
ATTCTTCCTCGGTATTAAGC+CGG | 0.562168 | 8.3:-7230745 | None:intergenic |
TCAACACCACTTGAAGAGAC+AGG | 0.563737 | 8.3:-7225670 | None:intergenic |
ATACTTGTGATTACAAAGCA+TGG | 0.565098 | 8.3:-7222432 | None:intergenic |
ATTTCCGGGATAAATTTGGA+TGG | 0.565666 | 8.3:+7227000 | MS.gene61520:CDS |
AACACCTCTGCTGTGCCTAA+CGG | 0.566570 | 8.3:+7225213 | MS.gene61520:CDS |
AGGAATTCTTTCGGACTGGT+AGG | 0.566668 | 8.3:+7230801 | MS.gene61520:CDS |
ATTGCTCACTGCAATTGGCT+GGG | 0.569273 | 8.3:-7225566 | None:intergenic |
GAATCAGCAAAGTGATGCAG+AGG | 0.570072 | 8.3:+7230778 | MS.gene61520:CDS |
TCAGCAAAGTGATGCAGAGG+AGG | 0.570168 | 8.3:+7230781 | MS.gene61520:CDS |
GCAGAATCATCAACTGAACA+AGG | 0.575288 | 8.3:-7225775 | None:intergenic |
GATCCAACTCACCAAAACCC+TGG | 0.576628 | 8.3:+7229977 | MS.gene61520:CDS |
TTCGTGCAGATCCTAGTGAC+TGG | 0.577891 | 8.3:+7226349 | MS.gene61520:intron |
TATGAAAGAGTCCAGTCACT+AGG | 0.581151 | 8.3:-7226360 | None:intergenic |
CTGTGGAAGACACCCACGCA+GGG | 0.582346 | 8.3:-7225903 | None:intergenic |
TTCGGAACTTTAGAAAAGAT+GGG | 0.582890 | 8.3:+7222893 | MS.gene61520:CDS |
AACCATCCTGTCTCTTCAAG+TGG | 0.583378 | 8.3:+7225664 | MS.gene61520:CDS |
TTAGCAGACTAAAGGAGGCA+AGG | 0.584150 | 8.3:+7226706 | MS.gene61520:CDS |
CCGTCCATCCAAATTTATCC+CGG | 0.585048 | 8.3:-7227004 | None:intergenic |
TAGCAGACTAAAGGAGGCAA+GGG | 0.588948 | 8.3:+7226707 | MS.gene61520:CDS |
TTGAGAAAGCAGTGTTGCGT+TGG | 0.592228 | 8.3:+7230693 | MS.gene61520:intron |
ACATTAGATTGGACTTTGGG+AGG | 0.592424 | 8.3:-7226396 | None:intergenic |
AATCACCATTTACCTCCGTT+AGG | 0.593445 | 8.3:-7225228 | None:intergenic |
AAGCGCAAGAAGATTATAGG+AGG | 0.598107 | 8.3:+7230888 | MS.gene61520:CDS |
GTGTTTCACGGTAATGAACA+AGG | 0.598368 | 8.3:-7223320 | None:intergenic |
ATCACTTAGCAGACTAAAGG+AGG | 0.601189 | 8.3:+7226701 | MS.gene61520:CDS |
CCATGGTGCAGATGGGTCAG+AGG | 0.602933 | 8.3:-7224614 | None:intergenic |
TTTCAATGCAATTCCAAACA+GGG | 0.604567 | 8.3:-7226826 | None:intergenic |
GACCAAAACTGCATATGCTG+GGG | 0.606069 | 8.3:+7224663 | MS.gene61520:CDS |
GATACTCAAAAGTAACAACT+TGG | 0.606670 | 8.3:-7226545 | None:intergenic |
ACAGAATCCATGGTGCAGAT+GGG | 0.607338 | 8.3:-7224621 | None:intergenic |
CTGCAGAAATTGTTCAGATG+GGG | 0.607764 | 8.3:+7226443 | MS.gene61520:CDS |
TCCAATCTAATGTGTGTATG+TGG | 0.609379 | 8.3:+7226406 | MS.gene61520:CDS |
GCTGATCTTGCTTATACGAG+GGG | 0.612221 | 8.3:+7230013 | MS.gene61520:CDS |
GGCAAAGCCAAACTTGGTCA+CGG | 0.614024 | 8.3:+7229955 | MS.gene61520:CDS |
CCTCTGACCCATCTGCACCA+TGG | 0.617433 | 8.3:+7224614 | MS.gene61520:CDS |
TAAAGTTCCGAAGCATCTTG+CGG | 0.620816 | 8.3:-7222882 | None:intergenic |
AGCTTAGCTGGAAATATCAG+TGG | 0.624080 | 8.3:+7230097 | MS.gene61520:CDS |
TCATTACCGTGAAACACAAG+AGG | 0.627907 | 8.3:+7223326 | MS.gene61520:CDS |
GAAGCTTACCTTGCAATGTG+TGG | 0.628537 | 8.3:-7221831 | None:intergenic |
AGAATCATCAACTGAACAAG+GGG | 0.629791 | 8.3:-7225773 | None:intergenic |
GCTCTATGTGAAAGATACAC+TGG | 0.629798 | 8.3:+7230177 | MS.gene61520:CDS |
TGGAGGAAGCAAGAACGAGA+TGG | 0.631278 | 8.3:+7222387 | MS.gene61520:CDS |
TTACTGATGTGTCCCCTGCG+TGG | 0.631639 | 8.3:+7225890 | MS.gene61520:CDS |
GTCTTCCACAGAGAAATCAA+AGG | 0.632840 | 8.3:+7225915 | MS.gene61520:CDS |
TAAAGAGAAAGGGCTTCCGT+GGG | 0.635069 | 8.3:+7230720 | MS.gene61520:CDS |
ACCTCCGTTAGGCACAGCAG+AGG | 0.636051 | 8.3:-7225217 | None:intergenic |
CGATGTTGCGAGCATTATGG+AGG | 0.637890 | 8.3:+7222370 | MS.gene61520:CDS |
AATGCGGTGGTACCCAGCAA+CGG | 0.638258 | 8.3:-7226470 | None:intergenic |
ATCCATGTATATTATGCACA+TGG | 0.639136 | 8.3:+7223113 | MS.gene61520:CDS |
CAGAATCATCAACTGAACAA+GGG | 0.639781 | 8.3:-7225774 | None:intergenic |
GTTGGCCCTTAATCAAGCAA+AGG | 0.646848 | 8.3:+7230916 | MS.gene61520:CDS |
TGGCTCACTGGAAACTAGCA+CGG | 0.646998 | 8.3:+7230117 | MS.gene61520:CDS |
TAAGATCGTTTGCTACGACT+AGG | 0.647975 | 8.3:-7225191 | None:intergenic |
TTTCACATAGAGCTGCTCCT+CGG | 0.648879 | 8.3:-7230167 | None:intergenic |
TCTGTGGAAGACACCCACGC+AGG | 0.652477 | 8.3:-7225904 | None:intergenic |
ATGATGGCAAATAACTTACC+GGG | 0.653975 | 8.3:+7221778 | MS.gene61520:CDS |
GGAAACCTTTGATTTCTCTG+TGG | 0.654481 | 8.3:-7225920 | None:intergenic |
TTCATTAACGGATGAAACTG+AGG | 0.656620 | 8.3:-7225806 | None:intergenic |
ACTACTGAATATGATGCGCA+AGG | 0.659271 | 8.3:+7226897 | MS.gene61520:CDS |
CACCACTTGAAGAGACAGGA+TGG | 0.667219 | 8.3:-7225666 | None:intergenic |
TCTGATCCAACAAGTTGACC+CGG | 0.667535 | 8.3:-7221796 | None:intergenic |
AAGGATATCGAAATGAGCAG+AGG | 0.668623 | 8.3:+7225641 | MS.gene61520:CDS |
ACCTCTGCTGTGCCTAACGG+AGG | 0.674338 | 8.3:+7225216 | MS.gene61520:CDS |
CAGTCAAAAGCCATGAACTG+AGG | 0.675587 | 8.3:+7225136 | MS.gene61520:CDS |
ACCAAAACTGCATATGCTGG+GGG | 0.678637 | 8.3:+7224664 | MS.gene61520:CDS |
TGGGCTCCGGCTTAATACCG+AGG | 0.693204 | 8.3:+7230739 | MS.gene61520:CDS |
TGTGGAAGACACCCACGCAG+GGG | 0.697131 | 8.3:-7225902 | None:intergenic |
TATGGAAGAGAAGAACAACT+GGG | 0.717360 | 8.3:+7226599 | MS.gene61520:CDS |
CCATAATGCTCGCAACATCG+AGG | 0.721796 | 8.3:-7222367 | None:intergenic |
TCCAACTCACCAAAACCCTG+GGG | 0.739177 | 8.3:+7229979 | MS.gene61520:CDS |
CCTCGTATAAGCAAGATCAG+CGG | 0.742504 | 8.3:-7230011 | None:intergenic |
CCAACTCACCAAAACCCTGG+GGG | 0.742962 | 8.3:+7229980 | MS.gene61520:CDS |
AAATTCCGAGAACCTTACCG+AGG | 0.753280 | 8.3:+7230150 | MS.gene61520:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8.3 | gene | 7221775 | 7230937 | 7221775 | ID=MS.gene61520 |
chr8.3 | mRNA | 7221775 | 7230937 | 7221775 | ID=MS.gene61520.t1;Parent=MS.gene61520 |
chr8.3 | exon | 7221775 | 7221844 | 7221775 | ID=MS.gene61520.t1.exon1;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7221775 | 7221844 | 7221775 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7222366 | 7222491 | 7222366 | ID=MS.gene61520.t1.exon2;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7222366 | 7222491 | 7222366 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7222860 | 7222975 | 7222860 | ID=MS.gene61520.t1.exon3;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7222860 | 7222975 | 7222860 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7223095 | 7223183 | 7223095 | ID=MS.gene61520.t1.exon4;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7223095 | 7223183 | 7223095 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7223302 | 7223347 | 7223302 | ID=MS.gene61520.t1.exon5;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7223302 | 7223347 | 7223302 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7224568 | 7224685 | 7224568 | ID=MS.gene61520.t1.exon6;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7224568 | 7224685 | 7224568 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7225118 | 7225237 | 7225118 | ID=MS.gene61520.t1.exon7;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7225118 | 7225237 | 7225118 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7225327 | 7225385 | 7225327 | ID=MS.gene61520.t1.exon8;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7225327 | 7225385 | 7225327 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7225520 | 7225936 | 7225520 | ID=MS.gene61520.t1.exon9;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7225520 | 7225936 | 7225520 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7226358 | 7226479 | 7226358 | ID=MS.gene61520.t1.exon10;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7226358 | 7226479 | 7226358 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7226521 | 7227054 | 7226521 | ID=MS.gene61520.t1.exon11;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7226521 | 7227054 | 7226521 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7229922 | 7230266 | 7229922 | ID=MS.gene61520.t1.exon12;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7229922 | 7230266 | 7229922 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7230311 | 7230467 | 7230311 | ID=MS.gene61520.t1.exon13;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7230311 | 7230467 | 7230311 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7230630 | 7230666 | 7230630 | ID=MS.gene61520.t1.exon14;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7230630 | 7230666 | 7230630 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
chr8.3 | exon | 7230702 | 7230937 | 7230702 | ID=MS.gene61520.t1.exon15;Parent=MS.gene61520.t1 |
chr8.3 | CDS | 7230702 | 7230937 | 7230702 | ID=cds.MS.gene61520.t1;Parent=MS.gene61520.t1 |
Gene Sequence |
Protein sequence |