Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61577.t1 | XP_003592350.1 | 77.9 | 321 | 64 | 3 | 72 | 387 | 21 | 339 | 8.30E-132 | 480.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61577.t1 | Q9FLH8 | 69.3 | 300 | 89 | 2 | 74 | 372 | 23 | 320 | 6.7e-114 | 412.1 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61577.t1 | G7IC32 | 77.9 | 321 | 64 | 3 | 72 | 387 | 21 | 339 | 6.0e-132 | 480.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049977 | MS.gene61577 | 0.801169 | 1.02E-48 | -1.69E-46 |
| MS.gene053154 | MS.gene61577 | 0.813113 | 3.02E-51 | -1.69E-46 |
| MS.gene05415 | MS.gene61577 | 0.809344 | 1.98E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61577.t1 | MTR_1g101950 | 77.882 | 321 | 64 | 3 | 72 | 387 | 21 | 339 | 4.28e-172 | 484 |
| MS.gene61577.t1 | MTR_6g089480 | 72.816 | 309 | 77 | 3 | 82 | 385 | 2 | 308 | 5.47e-157 | 444 |
| MS.gene61577.t1 | MTR_6g089480 | 75.458 | 273 | 64 | 2 | 82 | 353 | 2 | 272 | 9.92e-144 | 409 |
| MS.gene61577.t1 | MTR_6g089480 | 76.015 | 271 | 62 | 2 | 82 | 351 | 2 | 270 | 1.78e-143 | 408 |
| MS.gene61577.t1 | MTR_1g069490 | 55.792 | 423 | 111 | 9 | 14 | 387 | 5 | 400 | 2.86e-135 | 393 |
| MS.gene61577.t1 | MTR_5g079460 | 63.127 | 339 | 112 | 5 | 51 | 384 | 49 | 379 | 9.43e-135 | 390 |
| MS.gene61577.t1 | MTR_1g057810 | 53.935 | 432 | 134 | 7 | 11 | 384 | 136 | 560 | 2.05e-127 | 378 |
| MS.gene61577.t1 | MTR_4g067310 | 59.561 | 319 | 120 | 6 | 72 | 385 | 13 | 327 | 1.30e-121 | 355 |
| MS.gene61577.t1 | MTR_1g076850 | 56.173 | 324 | 133 | 5 | 67 | 385 | 1 | 320 | 3.74e-121 | 354 |
| MS.gene61577.t1 | MTR_1g069745 | 65.101 | 298 | 85 | 5 | 95 | 387 | 4 | 287 | 1.32e-120 | 351 |
| MS.gene61577.t1 | MTR_2g098950 | 57.994 | 319 | 125 | 6 | 72 | 385 | 12 | 326 | 4.90e-120 | 351 |
| MS.gene61577.t1 | MTR_1g105150 | 51.620 | 432 | 130 | 8 | 11 | 384 | 136 | 546 | 7.07e-116 | 348 |
| MS.gene61577.t1 | MTR_7g075860 | 55.215 | 326 | 137 | 4 | 66 | 384 | 33 | 356 | 3.17e-115 | 340 |
| MS.gene61577.t1 | MTR_1g054730 | 55.639 | 266 | 81 | 3 | 124 | 385 | 155 | 387 | 8.30e-80 | 250 |
| MS.gene61577.t1 | MTR_0046s0180 | 67.961 | 103 | 29 | 1 | 287 | 385 | 7 | 109 | 8.89e-43 | 145 |
| MS.gene61577.t1 | MTR_4g019165 | 29.799 | 349 | 193 | 7 | 74 | 374 | 93 | 437 | 1.61e-37 | 141 |
| MS.gene61577.t1 | MTR_5g044990 | 29.452 | 292 | 178 | 7 | 100 | 369 | 250 | 535 | 1.01e-35 | 138 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene61577.t1 | AT5G51830 | 69.333 | 300 | 89 | 2 | 74 | 372 | 23 | 320 | 4.44e-146 | 418 |
| MS.gene61577.t1 | AT5G51830 | 69.333 | 300 | 89 | 2 | 74 | 372 | 23 | 320 | 4.44e-146 | 418 |
| MS.gene61577.t1 | AT1G66430 | 67.224 | 299 | 94 | 3 | 72 | 369 | 63 | 358 | 1.83e-137 | 397 |
| MS.gene61577.t1 | AT4G10260 | 61.130 | 301 | 112 | 4 | 74 | 373 | 6 | 302 | 4.89e-120 | 351 |
| MS.gene61577.t1 | AT2G31390 | 58.746 | 303 | 116 | 5 | 73 | 372 | 8 | 304 | 2.31e-117 | 344 |
| MS.gene61577.t1 | AT1G06030 | 57.756 | 303 | 119 | 4 | 73 | 372 | 10 | 306 | 1.19e-116 | 342 |
| MS.gene61577.t1 | AT3G59480 | 57.285 | 302 | 120 | 5 | 74 | 372 | 10 | 305 | 1.02e-114 | 337 |
| MS.gene61577.t1 | AT1G06020 | 56.106 | 303 | 124 | 4 | 73 | 372 | 9 | 305 | 8.46e-113 | 333 |
| MS.gene61577.t1 | AT1G50390 | 45.752 | 153 | 52 | 1 | 220 | 372 | 1 | 122 | 1.05e-37 | 133 |
| MS.gene61577.t1 | AT3G54090 | 30.145 | 345 | 186 | 11 | 74 | 369 | 103 | 441 | 1.90e-37 | 141 |
| MS.gene61577.t1 | AT1G69200 | 28.904 | 301 | 187 | 6 | 103 | 379 | 249 | 546 | 2.35e-33 | 131 |
Find 96 sgRNAs with CRISPR-Local
Find 168 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCGTGTGCATCCTGGATTAA+AGG | 0.254338 | 4.1:+48443143 | MS.gene61577:CDS |
| CAGGCTAAAGTATTCCATTA+TGG | 0.280361 | 4.1:+48444509 | MS.gene61577:intron |
| CGAATTTGAGATTGGGACTA+TGG | 0.282851 | 4.1:+48444624 | MS.gene61577:CDS |
| CAATTAGAAGCTTGAGATTA+GGG | 0.299221 | 4.1:-48444908 | None:intergenic |
| TAGGTTGGAGAAGATGAATT+TGG | 0.302890 | 4.1:+48444200 | MS.gene61577:intron |
| AGTGGACTGGTTGTTTGTTT+TGG | 0.311474 | 4.1:+48443658 | MS.gene61577:CDS |
| CCTATATTGCATTAAATTGC+AGG | 0.316763 | 4.1:-48445542 | None:intergenic |
| TTGAGGATTGCTAAAGATTC+CGG | 0.333275 | 4.1:+48444581 | MS.gene61577:CDS |
| CCTGCAATTTAATGCAATAT+AGG | 0.342917 | 4.1:+48445542 | MS.gene61577:CDS |
| AACAAAGGCCAATGTGGTTC+TGG | 0.349958 | 4.1:-48444291 | None:intergenic |
| CCTGAAAATACTGAAGTATT+GGG | 0.350349 | 4.1:+48443295 | MS.gene61577:CDS |
| ACAATTAGAAGCTTGAGATT+AGG | 0.362928 | 4.1:-48444909 | None:intergenic |
| AGGTTGGAGAAGATGAATTT+GGG | 0.383868 | 4.1:+48444201 | MS.gene61577:intron |
| TTAAAGGCACCTTCTTTATG+AGG | 0.393768 | 4.1:-48444409 | None:intergenic |
| TCTAATGTACCGGTGACAAC+TGG | 0.395332 | 4.1:+48443256 | MS.gene61577:CDS |
| GCAGTTGGCATCTCTAAGTT+GGG | 0.396668 | 4.1:+48443775 | MS.gene61577:CDS |
| AGCTCTGACTCAGGCTCATC+CGG | 0.399327 | 4.1:-48444377 | None:intergenic |
| TCAAACTGAAGGAACCATAA+TGG | 0.400543 | 4.1:-48444523 | None:intergenic |
| CACTTAACACTCAAATGCTT+TGG | 0.404249 | 4.1:+48443031 | None:intergenic |
| TCCTGAAAATACTGAAGTAT+TGG | 0.405059 | 4.1:+48443294 | MS.gene61577:CDS |
| GGTAGTGCAGGCTCGTCGCC+TGG | 0.408324 | 4.1:-48445503 | None:intergenic |
| TTAAATAATGTTAATACCTC+TGG | 0.411331 | 4.1:+48444248 | MS.gene61577:CDS |
| GAGAGGGTATAATGAGCATA+TGG | 0.412206 | 4.1:+48444666 | MS.gene61577:CDS |
| CATAGTCCCAATCTCAAATT+CGG | 0.415637 | 4.1:-48444623 | None:intergenic |
| GTATGATCCGAATTTGAGAT+TGG | 0.427728 | 4.1:+48444616 | MS.gene61577:CDS |
| GGCAGTTGGCATCTCTAAGT+TGG | 0.428328 | 4.1:+48443774 | MS.gene61577:CDS |
| CTGCTGATGCATTTGTTAGT+GGG | 0.443667 | 4.1:+48445299 | MS.gene61577:CDS |
| CAATGTATGTGGCGCAATCC+AGG | 0.446218 | 4.1:+48445485 | MS.gene61577:CDS |
| GCTGCTGATGCATTTGTTAG+TGG | 0.457218 | 4.1:+48445298 | MS.gene61577:CDS |
| TGCACACGAAGGCCTTCAAC+AGG | 0.467913 | 4.1:-48443129 | None:intergenic |
| GGATCAAGCCGATGTCATAA+AGG | 0.479376 | 4.1:+48444688 | MS.gene61577:CDS |
| CTAGTGGTCGAGCCTGTTGA+AGG | 0.482764 | 4.1:+48443117 | MS.gene61577:CDS |
| AAGCTTCTAATTGTTACTGA+AGG | 0.488063 | 4.1:+48444918 | MS.gene61577:CDS |
| TTTGTTACACTTAGCGCTGA+TGG | 0.489615 | 4.1:+48444308 | MS.gene61577:CDS |
| TATGATCCGAATTTGAGATT+GGG | 0.500687 | 4.1:+48444617 | MS.gene61577:CDS |
| GTTAAACCTGTGGACACAAC+TGG | 0.500818 | 4.1:+48445274 | MS.gene61577:CDS |
| CAGTTGGCATCTCTAAGTTG+GGG | 0.501143 | 4.1:+48443776 | MS.gene61577:CDS |
| AATACAGCATCATCATCATA+AGG | 0.502358 | 4.1:-48444870 | None:intergenic |
| TCCTAGTGCTGATATGCCTC+CGG | 0.507456 | 4.1:+48444358 | MS.gene61577:CDS |
| ATCATACGAGAGAATGCAAC+CGG | 0.507660 | 4.1:-48444600 | None:intergenic |
| TAACACTCAAATGCTTTGGC+AGG | 0.512166 | 4.1:+48443035 | None:intergenic |
| AAAATTTACCTTTATGACAT+CGG | 0.512596 | 4.1:-48444696 | None:intergenic |
| TGGCTCATCTTGCTGCCTTG+AGG | 0.514567 | 4.1:+48444564 | MS.gene61577:CDS |
| TCTCGAGCAGCCTTGTCTGA+TGG | 0.514889 | 4.1:-48444647 | None:intergenic |
| ATAGATATCCTGCCAACAAT+GGG | 0.516875 | 4.1:+48443691 | MS.gene61577:CDS |
| AGAGACACTCCACCCATTGT+TGG | 0.519730 | 4.1:-48443703 | None:intergenic |
| TTAAGATCAAGCTCTGACTC+AGG | 0.520100 | 4.1:-48444386 | None:intergenic |
| GAAGGCCTTCGTGTGCATCC+TGG | 0.526487 | 4.1:+48443135 | MS.gene61577:CDS |
| AGAAGGCTGCATCAGTGGAC+TGG | 0.531434 | 4.1:+48443645 | MS.gene61577:intron |
| AGATGAATTTGGGCGTATGT+TGG | 0.532518 | 4.1:+48444211 | MS.gene61577:CDS |
| TGATCTTAACCTCATAAAGA+AGG | 0.540398 | 4.1:+48444400 | MS.gene61577:CDS |
| TTAACAGAAGGCTGCATCAG+TGG | 0.541189 | 4.1:+48443640 | MS.gene61577:intron |
| GATAGATATCCTGCCAACAA+TGG | 0.541311 | 4.1:+48443690 | MS.gene61577:CDS |
| CTGAAAATACTGAAGTATTG+GGG | 0.543478 | 4.1:+48443296 | MS.gene61577:CDS |
| AACGAAGAAACCTTTAATCC+AGG | 0.550368 | 4.1:-48443153 | None:intergenic |
| GCAGCACCAGTTGTGTCCAC+AGG | 0.550464 | 4.1:-48445280 | None:intergenic |
| ATCAACTTTCCAGTTGTCAC+CGG | 0.554135 | 4.1:-48443265 | None:intergenic |
| AGTTGGCATCTCTAAGTTGG+GGG | 0.556296 | 4.1:+48443777 | MS.gene61577:CDS |
| ACACTCCACCCATTGTTGGC+AGG | 0.556804 | 4.1:-48443699 | None:intergenic |
| GGTCAAAATCTCTAATGTAC+CGG | 0.557966 | 4.1:+48443246 | MS.gene61577:intron |
| AGCTTCTAATTGTTACTGAA+GGG | 0.558772 | 4.1:+48444919 | MS.gene61577:CDS |
| AGAGGGTATAATGAGCATAT+GGG | 0.561618 | 4.1:+48444667 | MS.gene61577:CDS |
| TCAAACAGTCGACGGACTAG+TGG | 0.564409 | 4.1:+48443101 | MS.gene61577:CDS |
| TTGCATTTCAGCAATGTATG+TGG | 0.564983 | 4.1:+48445474 | MS.gene61577:CDS |
| ATCAGACAAGGCTGCTCGAG+AGG | 0.566005 | 4.1:+48444649 | MS.gene61577:CDS |
| CTAGGTTATCAATTGACTGA+TGG | 0.568515 | 4.1:+48443075 | MS.gene61577:CDS |
| CAAGGAGCTATCTTGAAAGC+AGG | 0.572612 | 4.1:-48443736 | None:intergenic |
| TGACTCATCAATCAAACTGA+AGG | 0.590358 | 4.1:-48444534 | None:intergenic |
| TTCTAAAGCCAGAACCACAT+TGG | 0.591842 | 4.1:+48444283 | MS.gene61577:CDS |
| GATTGATGAGTCATGCAAGT+TGG | 0.599963 | 4.1:+48444544 | MS.gene61577:CDS |
| GATATCCTGCCAACAATGGG+TGG | 0.600127 | 4.1:+48443694 | MS.gene61577:CDS |
| ACTCAAATGCTTTGGCAGGT+CGG | 0.602276 | 4.1:+48443039 | None:intergenic |
| TTCATCTGCAGTTATAAGCA+AGG | 0.602376 | 4.1:+48443801 | MS.gene61577:CDS |
| TATCTTGAAAGCAGGCACTT+CGG | 0.603984 | 4.1:-48443728 | None:intergenic |
| GGTGCTGCAAACGTGGCAGT+TGG | 0.605003 | 4.1:+48443760 | MS.gene61577:CDS |
| TCCTTGTGGTGCTGCAAACG+TGG | 0.606080 | 4.1:+48443753 | MS.gene61577:CDS |
| TGAAAATACTGAAGTATTGG+GGG | 0.606433 | 4.1:+48443297 | MS.gene61577:CDS |
| CAAATGCTTTGGCAGGTCGG+TGG | 0.607481 | 4.1:+48443042 | None:intergenic |
| GTCGGTGGAATTGTCGAGCT+AGG | 0.609181 | 4.1:+48443057 | MS.gene61577:CDS |
| GCCACGTTTGCAGCACCACA+AGG | 0.610779 | 4.1:-48443754 | None:intergenic |
| GGGACTATGGCCATCAGACA+AGG | 0.616523 | 4.1:+48444637 | MS.gene61577:CDS |
| TCAGACAAGGCTGCTCGAGA+GGG | 0.618497 | 4.1:+48444650 | MS.gene61577:CDS |
| ATCAGCGCTAAGTGTAACAA+AGG | 0.619496 | 4.1:-48444306 | None:intergenic |
| ATTGTTACTGAAGGGTCAGA+CGG | 0.620886 | 4.1:+48444927 | MS.gene61577:CDS |
| GTTGGCATCTCTAAGTTGGG+GGG | 0.621474 | 4.1:+48443778 | MS.gene61577:CDS |
| TCTGACTCAGGCTCATCCGG+AGG | 0.636339 | 4.1:-48444374 | None:intergenic |
| AGGTATCAATGTTAAACCTG+TGG | 0.646831 | 4.1:+48445264 | MS.gene61577:CDS |
| TCCGGAGGCATATCAGCACT+AGG | 0.651903 | 4.1:-48444359 | None:intergenic |
| GCTTTCAAGATAGCTCCTTG+TGG | 0.652401 | 4.1:+48443739 | MS.gene61577:CDS |
| GGAATCTTTAGCAATCCTCA+AGG | 0.662729 | 4.1:-48444579 | None:intergenic |
| GATGGTGTTCAAACAGTCGA+CGG | 0.667224 | 4.1:+48443093 | MS.gene61577:CDS |
| AGAATCAAACAGCATGCCAG+AGG | 0.677080 | 4.1:-48444264 | None:intergenic |
| AAGTGTAACAAAGGCCAATG+TGG | 0.678456 | 4.1:-48444297 | None:intergenic |
| GAAAATACTGAAGTATTGGG+GGG | 0.703982 | 4.1:+48443298 | MS.gene61577:CDS |
| TTAATCCAGGATGCACACGA+AGG | 0.719372 | 4.1:-48443140 | None:intergenic |
| CGGTTGTAGATATTACACCA+AGG | 0.754663 | 4.1:+48444947 | MS.gene61577:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAGATAAAAGTTTAATAAA+TGG | + | chr4.1:48443372-48443391 | MS.gene61577:intron | 10.0% |
| !! | AAGATAAAAGTTTAATAAAT+GGG | + | chr4.1:48443373-48443392 | MS.gene61577:intron | 10.0% |
| !! | ATTTAAACAAAAAGTCTTTA+TGG | - | chr4.1:48444461-48444480 | None:intergenic | 15.0% |
| !! | TATATGTATTAAGATGAAAA+TGG | - | chr4.1:48443183-48443202 | None:intergenic | 15.0% |
| !! | AAAATTTACCTTTATGACAT+CGG | - | chr4.1:48444699-48444718 | None:intergenic | 20.0% |
| !! | ATTCTTAGGTAAAGTAAAAT+GGG | - | chr4.1:48444128-48444147 | None:intergenic | 20.0% |
| !! | CTAATTAGCATAACTTAATA+AGG | + | chr4.1:48443553-48443572 | MS.gene61577:intron | 20.0% |
| !! | TAAAAGATATTCCTCAAAAT+GGG | - | chr4.1:48444058-48444077 | None:intergenic | 20.0% |
| !! | TAAACAGAGATGAAAATTAA+AGG | - | chr4.1:48444428-48444447 | None:intergenic | 20.0% |
| !! | TATTCTTAGGTAAAGTAAAA+TGG | - | chr4.1:48444129-48444148 | None:intergenic | 20.0% |
| !! | TTAAATAATGTTAATACCTC+TGG | + | chr4.1:48444248-48444267 | MS.gene61577:CDS | 20.0% |
| !!! | ATTTTTTTTGCAGGATTTTA+AGG | + | chr4.1:48445231-48445250 | MS.gene61577:intron | 20.0% |
| !!! | CAGATTTTAATTGTCTAAAT+AGG | + | chr4.1:48444995-48445014 | MS.gene61577:intron | 20.0% |
| !!! | GTAATAGTATTCTGAATTTT+AGG | + | chr4.1:48444158-48444177 | MS.gene61577:intron | 20.0% |
| !!! | TAGTTGGTTAGATTTTAAAA+TGG | - | chr4.1:48444098-48444117 | None:intergenic | 20.0% |
| !!! | TGATTACTAATTTTTTTTGC+AGG | + | chr4.1:48445222-48445241 | MS.gene61577:intron | 20.0% |
| !!! | TTTAATTTAATACTGATTGC+AGG | + | chr4.1:48444490-48444509 | MS.gene61577:intron | 20.0% |
| !!! | TTTTTTTTGCAGGATTTTAA+GGG | + | chr4.1:48445232-48445251 | MS.gene61577:intron | 20.0% |
| ! | AAATCTGAGTTAAATGACTT+TGG | - | chr4.1:48444982-48445001 | None:intergenic | 25.0% |
| ! | AATAGAAGAATCATTTCACA+TGG | - | chr4.1:48443528-48443547 | None:intergenic | 25.0% |
| ! | AGATTTGAACAAATCAAACA+TGG | - | chr4.1:48443889-48443908 | None:intergenic | 25.0% |
| ! | ATAGAAGAATCATTTCACAT+GGG | - | chr4.1:48443527-48443546 | None:intergenic | 25.0% |
| ! | GAATTACCTCAAAAATACTT+GGG | - | chr4.1:48445348-48445367 | None:intergenic | 25.0% |
| ! | GTAAAAGATATTCCTCAAAA+TGG | - | chr4.1:48444059-48444078 | None:intergenic | 25.0% |
| ! | TAAAATGGTTTCTATTCGAT+GGG | - | chr4.1:48444083-48444102 | None:intergenic | 25.0% |
| ! | TCATCTCTGTTTATAAAATG+TGG | + | chr4.1:48444435-48444454 | MS.gene61577:intron | 25.0% |
| ! | TGAATTACCTCAAAAATACT+TGG | - | chr4.1:48445349-48445368 | None:intergenic | 25.0% |
| ! | TGTTTATTGACATGGTTATT+TGG | + | chr4.1:48443838-48443857 | MS.gene61577:intron | 25.0% |
| ! | TTAAAATGGTTTCTATTCGA+TGG | - | chr4.1:48444084-48444103 | None:intergenic | 25.0% |
| !! | AACTTAATAAGGATGTTTTG+TGG | + | chr4.1:48443564-48443583 | MS.gene61577:intron | 25.0% |
| !! | AATATCTTAACTCCTGTTTT+AGG | + | chr4.1:48444181-48444200 | MS.gene61577:intron | 25.0% |
| !! | ACAAGTACTTTTATGAAGTT+TGG | + | chr4.1:48443474-48443493 | MS.gene61577:intron | 25.0% |
| !!! | AATGAATATAGTTCTGATCT+AGG | + | chr4.1:48443430-48443449 | MS.gene61577:intron | 25.0% |
| !!! | TTACAAGAAGTGTTATTCTT+AGG | - | chr4.1:48444142-48444161 | None:intergenic | 25.0% |
| AAGCTTCTAATTGTTACTGA+AGG | + | chr4.1:48444918-48444937 | MS.gene61577:CDS | 30.0% | |
| AATACAGCATCATCATCATA+AGG | - | chr4.1:48444873-48444892 | None:intergenic | 30.0% | |
| ACAAGTACCAATAGATTACT+TGG | - | chr4.1:48443225-48443244 | None:intergenic | 30.0% | |
| ACAATTAGAAGCTTGAGATT+AGG | - | chr4.1:48444912-48444931 | None:intergenic | 30.0% | |
| AGAGCAAAGAAGATAATGAA+AGG | - | chr4.1:48445034-48445053 | None:intergenic | 30.0% | |
| AGCTTCTAATTGTTACTGAA+GGG | + | chr4.1:48444919-48444938 | MS.gene61577:CDS | 30.0% | |
| AGTAATCTATTGGTACTTGT+AGG | + | chr4.1:48443225-48443244 | MS.gene61577:intron | 30.0% | |
| ATTCTCTCCAAGTAATCTAT+TGG | + | chr4.1:48443215-48443234 | MS.gene61577:intron | 30.0% | |
| CAAAAAAGAATAACGTGCAA+TGG | - | chr4.1:48444766-48444785 | None:intergenic | 30.0% | |
| CAATTAGAAGCTTGAGATTA+GGG | - | chr4.1:48444911-48444930 | None:intergenic | 30.0% | |
| GAATGTAACATTGTCATGTT+TGG | + | chr4.1:48444022-48444041 | MS.gene61577:intron | 30.0% | |
| TATGATGATCTCTTAACAGA+AGG | + | chr4.1:48443628-48443647 | MS.gene61577:intron | 30.0% | |
| TCCTGAAAATACTGAAGTAT+TGG | + | chr4.1:48443294-48443313 | MS.gene61577:CDS | 30.0% | |
| TCTATGTCTGTTTATTGACA+TGG | + | chr4.1:48443830-48443849 | MS.gene61577:intron | 30.0% | |
| TGATCTTAACCTCATAAAGA+AGG | + | chr4.1:48444400-48444419 | MS.gene61577:CDS | 30.0% | |
| TTAGGTAAAGTAAAATGGGA+AGG | - | chr4.1:48444124-48444143 | None:intergenic | 30.0% | |
| ! | ATGAGCTAATCTAGAACATA+AGG | - | chr4.1:48443338-48443357 | None:intergenic | 30.0% |
| ! | CCTGAAAATACTGAAGTATT+GGG | + | chr4.1:48443295-48443314 | MS.gene61577:CDS | 30.0% |
| ! | TATGATCCGAATTTGAGATT+GGG | + | chr4.1:48444617-48444636 | MS.gene61577:CDS | 30.0% |
| !! | CTGAAAATACTGAAGTATTG+GGG | + | chr4.1:48443296-48443315 | MS.gene61577:CDS | 30.0% |
| !! | TGAAAATACTGAAGTATTGG+GGG | + | chr4.1:48443297-48443316 | MS.gene61577:CDS | 30.0% |
| !!! | TTGATGCAGTTTTTTTTCTG+TGG | + | chr4.1:48445424-48445443 | MS.gene61577:intron | 30.0% |
| AACGAAGAAACCTTTAATCC+AGG | - | chr4.1:48443156-48443175 | None:intergenic | 35.0% | |
| AATCATTGTTAGCTGAATGC+TGG | - | chr4.1:48445207-48445226 | None:intergenic | 35.0% | |
| ACAACCTACTATTCGTCATT+GGG | - | chr4.1:48445120-48445139 | None:intergenic | 35.0% | |
| AGGTATCAATGTTAAACCTG+TGG | + | chr4.1:48445264-48445283 | MS.gene61577:CDS | 35.0% | |
| AGGTTGGAGAAGATGAATTT+GGG | + | chr4.1:48444201-48444220 | MS.gene61577:intron | 35.0% | |
| ATAGATATCCTGCCAACAAT+GGG | + | chr4.1:48443691-48443710 | MS.gene61577:CDS | 35.0% | |
| CATAGTCCCAATCTCAAATT+CGG | - | chr4.1:48444626-48444645 | None:intergenic | 35.0% | |
| CTAGGTTATCAATTGACTGA+TGG | + | chr4.1:48443075-48443094 | MS.gene61577:CDS | 35.0% | |
| GGTCAAAATCTCTAATGTAC+CGG | + | chr4.1:48443246-48443265 | MS.gene61577:intron | 35.0% | |
| GGTTTCTTGTTACTATCTAC+AGG | + | chr4.1:48443859-48443878 | MS.gene61577:intron | 35.0% | |
| TAAAATGGGAAGGCTATAGT+TGG | - | chr4.1:48444114-48444133 | None:intergenic | 35.0% | |
| TACAACCTACTATTCGTCAT+TGG | - | chr4.1:48445121-48445140 | None:intergenic | 35.0% | |
| TAGGTTGTAAAACTTACGCA+AGG | + | chr4.1:48445132-48445151 | MS.gene61577:intron | 35.0% | |
| TCAAACTGAAGGAACCATAA+TGG | - | chr4.1:48444526-48444545 | None:intergenic | 35.0% | |
| TGACTCATCAATCAAACTGA+AGG | - | chr4.1:48444537-48444556 | None:intergenic | 35.0% | |
| TTCATCTGCAGTTATAAGCA+AGG | + | chr4.1:48443801-48443820 | MS.gene61577:CDS | 35.0% | |
| TTGAGGATTGCTAAAGATTC+CGG | + | chr4.1:48444581-48444600 | MS.gene61577:CDS | 35.0% | |
| TTGCATTTCAGCAATGTATG+TGG | + | chr4.1:48445474-48445493 | MS.gene61577:CDS | 35.0% | |
| TTGCTCTTTATTCTGATGAG+TGG | + | chr4.1:48445047-48445066 | MS.gene61577:intron | 35.0% | |
| ! | ACTGATTACAGTTTTCTGCA+TGG | + | chr4.1:48443948-48443967 | MS.gene61577:intron | 35.0% |
| ! | AGAGGGTATAATGAGCATAT+GGG | + | chr4.1:48444667-48444686 | MS.gene61577:CDS | 35.0% |
| ! | CAGGCTAAAGTATTCCATTA+TGG | + | chr4.1:48444509-48444528 | MS.gene61577:intron | 35.0% |
| ! | CATATCAGCACTAGGATTTT+CGG | - | chr4.1:48444354-48444373 | None:intergenic | 35.0% |
| ! | CCCAATACTTCAGTATTTTC+AGG | - | chr4.1:48443298-48443317 | None:intergenic | 35.0% |
| ! | GTATGATCCGAATTTGAGAT+TGG | + | chr4.1:48444616-48444635 | MS.gene61577:CDS | 35.0% |
| ! | TAGGTTGGAGAAGATGAATT+TGG | + | chr4.1:48444200-48444219 | MS.gene61577:intron | 35.0% |
| !! | ATTCCCAAGCTCATTTTTCA+GGG | - | chr4.1:48444006-48444025 | None:intergenic | 35.0% |
| !! | GAAAATACTGAAGTATTGGG+GGG | + | chr4.1:48443298-48443317 | MS.gene61577:CDS | 35.0% |
| !! | GATTTTAAGGGCATAGTTAG+AGG | + | chr4.1:48445244-48445263 | MS.gene61577:CDS | 35.0% |
| !! | TCTTAACTCCTGTTTTAGGT+TGG | + | chr4.1:48444185-48444204 | MS.gene61577:intron | 35.0% |
| !! | TTAAAGGCACCTTCTTTATG+AGG | - | chr4.1:48444412-48444431 | None:intergenic | 35.0% |
| !! | TTCTGACCCAAGTATTTTTG+AGG | + | chr4.1:48445339-48445358 | MS.gene61577:CDS | 35.0% |
| !!! | ATTGCTTTTTTGACTGATGG+TGG | + | chr4.1:48444843-48444862 | MS.gene61577:CDS | 35.0% |
| !!! | GAGATTGCTTTTTTGACTGA+TGG | + | chr4.1:48444840-48444859 | MS.gene61577:CDS | 35.0% |
| AACTCCCTGAAAAATGAGCT+TGG | + | chr4.1:48443999-48444018 | MS.gene61577:intron | 40.0% | |
| AAGTGTAACAAAGGCCAATG+TGG | - | chr4.1:48444300-48444319 | None:intergenic | 40.0% | |
| ACTCCCTGAAAAATGAGCTT+GGG | + | chr4.1:48444000-48444019 | MS.gene61577:intron | 40.0% | |
| AGAAGAAAGTTGCGAGTGTT+TGG | + | chr4.1:48445399-48445418 | MS.gene61577:intron | 40.0% | |
| AGATGAATTTGGGCGTATGT+TGG | + | chr4.1:48444211-48444230 | MS.gene61577:CDS | 40.0% | |
| ATCAACTTTCCAGTTGTCAC+CGG | - | chr4.1:48443268-48443287 | None:intergenic | 40.0% | |
| ATCAGCGCTAAGTGTAACAA+AGG | - | chr4.1:48444309-48444328 | None:intergenic | 40.0% | |
| ATCATACGAGAGAATGCAAC+CGG | - | chr4.1:48444603-48444622 | None:intergenic | 40.0% | |
| ATTGTTACTGAAGGGTCAGA+CGG | + | chr4.1:48444927-48444946 | MS.gene61577:CDS | 40.0% | |
| CATCTTCTCCAACCTAAAAC+AGG | - | chr4.1:48444196-48444215 | None:intergenic | 40.0% | |
| CGGTTGTAGATATTACACCA+AGG | + | chr4.1:48444947-48444966 | MS.gene61577:CDS | 40.0% | |
| GACTTTGGTAAGCTTTACCT+TGG | - | chr4.1:48444967-48444986 | None:intergenic | 40.0% | |
| GATAGATATCCTGCCAACAA+TGG | + | chr4.1:48443690-48443709 | MS.gene61577:CDS | 40.0% | |
| GATTGATGAGTCATGCAAGT+TGG | + | chr4.1:48444544-48444563 | MS.gene61577:CDS | 40.0% | |
| GGAATCTTTAGCAATCCTCA+AGG | - | chr4.1:48444582-48444601 | None:intergenic | 40.0% | |
| TATCTTGAAAGCAGGCACTT+CGG | - | chr4.1:48443731-48443750 | None:intergenic | 40.0% | |
| ! | CGAATTTGAGATTGGGACTA+TGG | + | chr4.1:48444624-48444643 | MS.gene61577:CDS | 40.0% |
| ! | CTGCTGATGCATTTGTTAGT+GGG | + | chr4.1:48445299-48445318 | MS.gene61577:CDS | 40.0% |
| ! | GAGAGGGTATAATGAGCATA+TGG | + | chr4.1:48444666-48444685 | MS.gene61577:CDS | 40.0% |
| ! | GCAGGACATCATCTTTTGTA+GGG | - | chr4.1:48445527-48445546 | None:intergenic | 40.0% |
| ! | GTTAAAGTTCGCCCATTTTG+AGG | + | chr4.1:48444044-48444063 | MS.gene61577:intron | 40.0% |
| ! | TGCAGGACATCATCTTTTGT+AGG | - | chr4.1:48445528-48445547 | None:intergenic | 40.0% |
| ! | TTAAGATCAAGCTCTGACTC+AGG | - | chr4.1:48444389-48444408 | None:intergenic | 40.0% |
| ! | TTTGTTACACTTAGCGCTGA+TGG | + | chr4.1:48444308-48444327 | MS.gene61577:CDS | 40.0% |
| !! | CATTCCCAAGCTCATTTTTC+AGG | - | chr4.1:48444007-48444026 | None:intergenic | 40.0% |
| !! | TGATGAGTGGACTGAAATGT+TGG | + | chr4.1:48445060-48445079 | MS.gene61577:intron | 40.0% |
| !! | TTCTAAAGCCAGAACCACAT+TGG | + | chr4.1:48444283-48444302 | MS.gene61577:CDS | 40.0% |
| !!! | AGTGGACTGGTTGTTTGTTT+TGG | + | chr4.1:48443658-48443677 | MS.gene61577:CDS | 40.0% |
| !!! | TGCAGTTTTTTTTCTGTGGC+AGG | + | chr4.1:48445428-48445447 | MS.gene61577:intron | 40.0% |
| !!! | TTTTTTTCTGTGGCAGGATG+AGG | + | chr4.1:48445434-48445453 | MS.gene61577:intron | 40.0% |
| AACAAAGGCCAATGTGGTTC+TGG | - | chr4.1:48444294-48444313 | None:intergenic | 45.0% | |
| AGAATCAAACAGCATGCCAG+AGG | - | chr4.1:48444267-48444286 | None:intergenic | 45.0% | |
| CAAGGAGCTATCTTGAAAGC+AGG | - | chr4.1:48443739-48443758 | None:intergenic | 45.0% | |
| CAGTTGGCATCTCTAAGTTG+GGG | + | chr4.1:48443776-48443795 | MS.gene61577:CDS | 45.0% | |
| GACACCCAATGACGAATAGT+AGG | + | chr4.1:48445113-48445132 | MS.gene61577:intron | 45.0% | |
| GATGGTGTTCAAACAGTCGA+CGG | + | chr4.1:48443093-48443112 | MS.gene61577:CDS | 45.0% | |
| GCAGTTGGCATCTCTAAGTT+GGG | + | chr4.1:48443775-48443794 | MS.gene61577:CDS | 45.0% | |
| GCTTTCAAGATAGCTCCTTG+TGG | + | chr4.1:48443739-48443758 | MS.gene61577:CDS | 45.0% | |
| GGATCAAGCCGATGTCATAA+AGG | + | chr4.1:48444688-48444707 | MS.gene61577:CDS | 45.0% | |
| GTTAAACCTGTGGACACAAC+TGG | + | chr4.1:48445274-48445293 | MS.gene61577:CDS | 45.0% | |
| TCGTGTGCATCCTGGATTAA+AGG | + | chr4.1:48443143-48443162 | MS.gene61577:CDS | 45.0% | |
| TTAACAGAAGGCTGCATCAG+TGG | + | chr4.1:48443640-48443659 | MS.gene61577:intron | 45.0% | |
| TTAATCCAGGATGCACACGA+AGG | - | chr4.1:48443143-48443162 | None:intergenic | 45.0% | |
| ! | AGTTGGCATCTCTAAGTTGG+GGG | + | chr4.1:48443777-48443796 | MS.gene61577:CDS | 45.0% |
| ! | CATCTTTTGTAGGGTAGTGC+AGG | - | chr4.1:48445518-48445537 | None:intergenic | 45.0% |
| ! | CATGGTTTGTGCGAGTTTCA+AGG | + | chr4.1:48443966-48443985 | MS.gene61577:intron | 45.0% |
| ! | GCTGCTGATGCATTTGTTAG+TGG | + | chr4.1:48445298-48445317 | MS.gene61577:CDS | 45.0% |
| ! | TCTAATGTACCGGTGACAAC+TGG | + | chr4.1:48443256-48443275 | MS.gene61577:CDS | 45.0% |
| !! | AATACTGAAGTATTGGGGGG+TGG | + | chr4.1:48443301-48443320 | MS.gene61577:CDS | 45.0% |
| !! | TATTATATTAGTAAAAAAAA+AGG | - | chr4.1:48443610-48443629 | None:intergenic | 5.0% |
| AGAGACACTCCACCCATTGT+TGG | - | chr4.1:48443706-48443725 | None:intergenic | 50.0% | |
| CAATGTATGTGGCGCAATCC+AGG | + | chr4.1:48445485-48445504 | MS.gene61577:CDS | 50.0% | |
| GATATCCTGCCAACAATGGG+TGG | + | chr4.1:48443694-48443713 | MS.gene61577:CDS | 50.0% | |
| GGCAGTTGGCATCTCTAAGT+TGG | + | chr4.1:48443774-48443793 | MS.gene61577:CDS | 50.0% | |
| ! | CTTACGCAAGGTTTGCTTCG+AGG | + | chr4.1:48445144-48445163 | MS.gene61577:intron | 50.0% |
| ! | GTTGGCATCTCTAAGTTGGG+GGG | + | chr4.1:48443778-48443797 | MS.gene61577:CDS | 50.0% |
| !! | GAAGTATTGGGGGGTGGATT+AGG | + | chr4.1:48443307-48443326 | MS.gene61577:CDS | 50.0% |
| !! | TCAAACAGTCGACGGACTAG+TGG | + | chr4.1:48443101-48443120 | MS.gene61577:CDS | 50.0% |
| !! | TCCTAGTGCTGATATGCCTC+CGG | + | chr4.1:48444358-48444377 | MS.gene61577:CDS | 50.0% |
| ACACTCCACCCATTGTTGGC+AGG | - | chr4.1:48443702-48443721 | None:intergenic | 55.0% | |
| AGAAGGCTGCATCAGTGGAC+TGG | + | chr4.1:48443645-48443664 | MS.gene61577:intron | 55.0% | |
| ATCAGACAAGGCTGCTCGAG+AGG | + | chr4.1:48444649-48444668 | MS.gene61577:CDS | 55.0% | |
| CTAGTGGTCGAGCCTGTTGA+AGG | + | chr4.1:48443117-48443136 | MS.gene61577:CDS | 55.0% | |
| GGGACTATGGCCATCAGACA+AGG | + | chr4.1:48444637-48444656 | MS.gene61577:CDS | 55.0% | |
| GTCGGTGGAATTGTCGAGCT+AGG | + | chr4.1:48443057-48443076 | MS.gene61577:CDS | 55.0% | |
| TCAGACAAGGCTGCTCGAGA+GGG | + | chr4.1:48444650-48444669 | MS.gene61577:CDS | 55.0% | |
| TGCACACGAAGGCCTTCAAC+AGG | - | chr4.1:48443132-48443151 | None:intergenic | 55.0% | |
| TGGCTCATCTTGCTGCCTTG+AGG | + | chr4.1:48444564-48444583 | MS.gene61577:CDS | 55.0% | |
| ! | AGCTCTGACTCAGGCTCATC+CGG | - | chr4.1:48444380-48444399 | None:intergenic | 55.0% |
| ! | TCCGGAGGCATATCAGCACT+AGG | - | chr4.1:48444362-48444381 | None:intergenic | 55.0% |
| ! | TCTCGAGCAGCCTTGTCTGA+TGG | - | chr4.1:48444650-48444669 | None:intergenic | 55.0% |
| !! | TCCTTGTGGTGCTGCAAACG+TGG | + | chr4.1:48443753-48443772 | MS.gene61577:CDS | 55.0% |
| GAAGGCCTTCGTGTGCATCC+TGG | + | chr4.1:48443135-48443154 | MS.gene61577:CDS | 60.0% | |
| GCAGCACCAGTTGTGTCCAC+AGG | - | chr4.1:48445283-48445302 | None:intergenic | 60.0% | |
| GCCACGTTTGCAGCACCACA+AGG | - | chr4.1:48443757-48443776 | None:intergenic | 60.0% | |
| TCTGACTCAGGCTCATCCGG+AGG | - | chr4.1:48444377-48444396 | None:intergenic | 60.0% | |
| ! | GGTGCTGCAAACGTGGCAGT+TGG | + | chr4.1:48443760-48443779 | MS.gene61577:CDS | 60.0% |
| GGTAGTGCAGGCTCGTCGCC+TGG | - | chr4.1:48445506-48445525 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.1 | gene | 48443045 | 48445563 | 48443045 | ID=MS.gene61577 |
| chr4.1 | mRNA | 48443045 | 48445563 | 48443045 | ID=MS.gene61577.t1;Parent=MS.gene61577 |
| chr4.1 | exon | 48443045 | 48443164 | 48443045 | ID=MS.gene61577.t1.exon1;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48443045 | 48443164 | 48443045 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48443247 | 48443328 | 48443247 | ID=MS.gene61577.t1.exon2;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48443247 | 48443328 | 48443247 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48443647 | 48443822 | 48443647 | ID=MS.gene61577.t1.exon3;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48443647 | 48443822 | 48443647 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48444203 | 48444421 | 48444203 | ID=MS.gene61577.t1.exon4;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48444203 | 48444421 | 48444203 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48444512 | 48444709 | 48444512 | ID=MS.gene61577.t1.exon5;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48444512 | 48444709 | 48444512 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48444828 | 48444968 | 48444828 | ID=MS.gene61577.t1.exon6;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48444828 | 48444968 | 48444828 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48445244 | 48445360 | 48445244 | ID=MS.gene61577.t1.exon7;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48445244 | 48445360 | 48445244 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| chr4.1 | exon | 48445450 | 48445563 | 48445450 | ID=MS.gene61577.t1.exon8;Parent=MS.gene61577.t1 |
| chr4.1 | CDS | 48445450 | 48445563 | 48445450 | ID=cds.MS.gene61577.t1;Parent=MS.gene61577.t1 |
| Gene Sequence |
| Protein sequence |
