Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053154.t1 | XP_020237768.1 | 74.8 | 301 | 67 | 3 | 1 | 294 | 1 | 299 | 2.20E-116 | 428.7 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053154.t1 | Q8H1G0 | 57.4 | 291 | 122 | 1 | 1 | 289 | 1 | 291 | 9.0e-87 | 321.6 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053154.t1 | A0A151RPA5 | 74.8 | 301 | 67 | 3 | 1 | 294 | 1 | 299 | 1.6e-116 | 428.7 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|---|---|
| MS.gene053154.t1 | TF | C2C2-GATA |
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene053154 | MS.gene05414 | 0.810014 | 1.42E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene05415 | 0.84185 | 3.70E-58 | -1.69E-46 |
| MS.gene053154 | MS.gene054570 | 0.963887 | 1.22E-122 | -1.69E-46 |
| MS.gene053154 | MS.gene059625 | 0.801962 | 7.03E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene060167 | 0.801182 | 1.02E-48 | -1.69E-46 |
| MS.gene053154 | MS.gene062042 | 0.803439 | 3.48E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene062165 | 0.813244 | 2.82E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene064185 | 0.802593 | 5.21E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene065039 | 0.818799 | 1.62E-52 | -1.69E-46 |
| MS.gene053154 | MS.gene065294 | -0.825041 | 5.82E-54 | -1.69E-46 |
| MS.gene053154 | MS.gene065904 | 0.826557 | 2.54E-54 | -1.69E-46 |
| MS.gene053154 | MS.gene067208 | 0.803814 | 2.91E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene068924 | 0.819502 | 1.12E-52 | -1.69E-46 |
| MS.gene053154 | MS.gene069956 | 0.80683 | 6.80E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene070818 | 0.814249 | 1.70E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene070839 | 0.806002 | 1.02E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene072819 | 0.81923 | 1.30E-52 | -1.69E-46 |
| MS.gene053154 | MS.gene08589 | 0.803232 | 3.85E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene09025 | 0.81665 | 4.96E-52 | -1.69E-46 |
| MS.gene053154 | MS.gene20049 | 0.804619 | 1.98E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene21334 | 0.82558 | 4.34E-54 | -1.69E-46 |
| MS.gene053154 | MS.gene22309 | 0.801901 | 7.24E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene22612 | 0.811366 | 7.26E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene24885 | 0.800865 | 1.18E-48 | -1.69E-46 |
| MS.gene053154 | MS.gene25755 | 0.808065 | 3.72E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene27054 | 0.802527 | 5.38E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene34180 | 0.802378 | 5.77E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene38659 | 0.802572 | 5.26E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene47552 | 0.805051 | 1.61E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene52671 | 0.80596 | 1.04E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene54564 | 0.811054 | 8.48E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene58485 | 0.812732 | 3.66E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene61376 | 0.801836 | 7.46E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene61388 | 0.813425 | 2.58E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene61577 | 0.813113 | 3.02E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene64249 | 0.802188 | 6.32E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene67814 | 0.81834 | 2.06E-52 | -1.69E-46 |
| MS.gene053154 | MS.gene74257 | 0.812607 | 3.89E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene74758 | 0.808813 | 2.58E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene76158 | 0.819641 | 1.04E-52 | -1.69E-46 |
| MS.gene053154 | MS.gene80152 | 0.807907 | 4.02E-50 | -1.69E-46 |
| MS.gene053154 | MS.gene84994 | 0.800649 | 1.31E-48 | -1.69E-46 |
| MS.gene053154 | MS.gene90146 | 0.820503 | 6.63E-53 | -1.69E-46 |
| MS.gene053154 | MS.gene91676 | 0.800211 | 1.60E-48 | -1.69E-46 |
| MS.gene053154 | MS.gene97534 | 0.802727 | 4.89E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene98087 | 0.802312 | 5.95E-49 | -1.69E-46 |
| MS.gene053154 | MS.gene98088 | 0.800349 | 1.50E-48 | -1.69E-46 |
| MS.gene053154 | MS.gene98612 | 0.814711 | 1.34E-51 | -1.69E-46 |
| MS.gene053154 | MS.gene99820 | 0.809778 | 1.60E-50 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053154.t1 | MTR_3g100050 | 58.447 | 219 | 69 | 5 | 54 | 262 | 35 | 241 | 2.52e-71 | 223 |
| MS.gene053154.t1 | MTR_5g066510 | 47.857 | 280 | 85 | 10 | 15 | 271 | 34 | 275 | 6.93e-66 | 208 |
| MS.gene053154.t1 | MTR_3g100040 | 55.249 | 181 | 76 | 1 | 83 | 263 | 69 | 244 | 4.98e-63 | 203 |
| MS.gene053154.t1 | MTR_4g093730 | 51.741 | 201 | 81 | 4 | 81 | 275 | 41 | 231 | 2.51e-59 | 192 |
| MS.gene053154.t1 | MTR_3g100040 | 54.483 | 145 | 61 | 1 | 119 | 263 | 1 | 140 | 1.06e-47 | 160 |
| MS.gene053154.t1 | MTR_4g008070 | 87.342 | 79 | 10 | 0 | 177 | 255 | 1 | 79 | 9.58e-46 | 150 |
| MS.gene053154.t1 | MTR_4g008090 | 89.873 | 79 | 7 | 1 | 102 | 179 | 12 | 90 | 6.77e-43 | 143 |
| MS.gene053154.t1 | MTR_5g066510 | 46.535 | 202 | 72 | 8 | 15 | 215 | 34 | 200 | 1.66e-37 | 132 |
| MS.gene053154.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.37e-14 | 73.2 |
| MS.gene053154.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.63e-14 | 73.9 |
| MS.gene053154.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.74e-14 | 73.6 |
| MS.gene053154.t1 | MTR_3g060200 | 40.000 | 95 | 51 | 2 | 169 | 263 | 4 | 92 | 1.78e-14 | 73.6 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene053154.t1 | AT1G51600 | 60.339 | 295 | 115 | 1 | 1 | 293 | 1 | 295 | 5.46e-127 | 364 |
| MS.gene053154.t1 | AT1G51600 | 60.339 | 295 | 115 | 1 | 1 | 293 | 1 | 295 | 5.46e-127 | 364 |
| MS.gene053154.t1 | AT3G21175 | 62.414 | 290 | 102 | 3 | 1 | 288 | 1 | 285 | 7.89e-122 | 351 |
| MS.gene053154.t1 | AT3G21175 | 61.986 | 292 | 102 | 4 | 1 | 288 | 1 | 287 | 7.55e-120 | 346 |
| MS.gene053154.t1 | AT3G21175 | 59.545 | 220 | 85 | 1 | 1 | 220 | 1 | 216 | 3.69e-84 | 252 |
| MS.gene053154.t1 | AT4G24470 | 51.269 | 197 | 87 | 3 | 68 | 263 | 68 | 256 | 3.52e-61 | 197 |
| MS.gene053154.t1 | AT4G24470 | 51.269 | 197 | 87 | 3 | 68 | 263 | 68 | 256 | 4.05e-61 | 196 |
| MS.gene053154.t1 | AT4G24470 | 51.269 | 197 | 87 | 3 | 68 | 263 | 68 | 256 | 4.05e-61 | 196 |
Find 81 sgRNAs with CRISPR-Local
Find 174 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TCAACCTCATTCTTGTTTAA+TGG | 0.137752 | 4.2:-91908849 | None:intergenic |
| TCAATCTGTACTACTGTTAT+TGG | 0.235229 | 4.2:+91907372 | MS.gene053154:CDS |
| TGGACTTATGTGGGCAAATA+AGG | 0.243603 | 4.2:+91908445 | MS.gene053154:CDS |
| TGGACTTGGCAGATGTAAAT+TGG | 0.265787 | 4.2:-91908092 | None:intergenic |
| CAGAGGGTTCTTGGCCCTTC+AGG | 0.272302 | 4.2:-91908413 | None:intergenic |
| CAAGCATTGCAGAGGGTTCT+TGG | 0.288221 | 4.2:-91908422 | None:intergenic |
| TTTAGGATGCAAAGAAATAA+AGG | 0.321682 | 4.2:+91908069 | MS.gene053154:intron |
| TGACAATCACACTTTAATAA+TGG | 0.323443 | 4.2:+91906620 | MS.gene053154:CDS |
| TCTCATTCCCATTGCTCATA+TGG | 0.350967 | 4.2:-91906509 | None:intergenic |
| ATGGATCAAGGGAATGATAT+TGG | 0.357672 | 4.2:+91906639 | MS.gene053154:CDS |
| CAATCTGTACTACTGTTATT+GGG | 0.360369 | 4.2:+91907373 | MS.gene053154:CDS |
| TCAGGTCCACGCCGCATCAT+TGG | 0.388420 | 4.2:-91908395 | None:intergenic |
| GTCATGAAGATTTCCATTGT+TGG | 0.406240 | 4.2:-91906601 | None:intergenic |
| ATCAAGGACAGCAACCTTGC+CGG | 0.414254 | 4.2:+91908815 | MS.gene053154:CDS |
| ATCTCTAAGCACTGTCTGAT+TGG | 0.416220 | 4.2:-91908976 | None:intergenic |
| ACCTTCCATGCCAATTTCTC+CGG | 0.420398 | 4.2:+91907420 | MS.gene053154:CDS |
| CAGTACATGGATGGTATTCA+TGG | 0.423116 | 4.2:+91906414 | None:intergenic |
| TGACTCCGTGTCACCAGAAA+AGG | 0.425549 | 4.2:+91906704 | MS.gene053154:CDS |
| TTTCTCCGGACGAAAATAAC+CGG | 0.434754 | 4.2:+91907434 | MS.gene053154:CDS |
| TGAACCACAGGGAGCGCTTA+GGG | 0.440040 | 4.2:+91908788 | MS.gene053154:intron |
| TCAGCTGATGCAGACTCATC+AGG | 0.441839 | 4.2:-91908117 | None:intergenic |
| GCAAGGTTGCTGTCCTTGAT+AGG | 0.445283 | 4.2:-91908812 | None:intergenic |
| ATTGGCATGGAAGGTAAGGT+TGG | 0.459291 | 4.2:-91907412 | None:intergenic |
| CACACTTTAATAATGGATCA+AGG | 0.459438 | 4.2:+91906627 | MS.gene053154:CDS |
| TTGAACCACAGGGAGCGCTT+AGG | 0.472073 | 4.2:+91908787 | MS.gene053154:intron |
| TTACACGGTATCTTGCTGTT+GGG | 0.489725 | 4.2:-91908187 | None:intergenic |
| GCAATGCTTGTGGACTTATG+TGG | 0.493003 | 4.2:+91908435 | MS.gene053154:CDS |
| CGGAACAAGTGAAGGTTTGA+CGG | 0.497532 | 4.2:+91908149 | MS.gene053154:CDS |
| CTTACACGGTATCTTGCTGT+TGG | 0.501886 | 4.2:-91908188 | None:intergenic |
| GGTTTGACGGTAGACAATAA+TGG | 0.505445 | 4.2:+91908162 | MS.gene053154:CDS |
| AAGCACTGTCTGATTGGCCT+CGG | 0.507209 | 4.2:-91908970 | None:intergenic |
| GGTTGCACCATATGAGCAAT+GGG | 0.518379 | 4.2:+91906502 | MS.gene053154:CDS |
| TATAGGATGTTGTTCATCAC+TGG | 0.518790 | 4.2:-91906457 | None:intergenic |
| TGTTCATATGGCATATGTAT+AGG | 0.519920 | 4.2:-91906474 | None:intergenic |
| AGACTCATCAGGATTGGACT+TGG | 0.520027 | 4.2:-91908106 | None:intergenic |
| GATCAAAATAACGGCGGTGG+CGG | 0.521917 | 4.2:+91906540 | MS.gene053154:CDS |
| AGAAATTGGCATGGAAGGTA+AGG | 0.522598 | 4.2:-91907416 | None:intergenic |
| GAAGATTTCCATTGTTGGAG+TGG | 0.525496 | 4.2:-91906596 | None:intergenic |
| GGTGAAATCCACTCCAACAA+TGG | 0.530034 | 4.2:+91906588 | MS.gene053154:CDS |
| TTCTCCATTAAACAAGAATG+AGG | 0.532237 | 4.2:+91908845 | MS.gene053154:CDS |
| TGGCTCTTCCAGTACATGGA+TGG | 0.532259 | 4.2:+91906405 | None:intergenic |
| TGCAACCCGTGATGTTCATA+TGG | 0.534256 | 4.2:-91906486 | None:intergenic |
| ATGATGCGGCGTGGACCTGA+AGG | 0.535411 | 4.2:+91908398 | MS.gene053154:CDS |
| AGAACCCTCTGCAATGCTTG+TGG | 0.537519 | 4.2:+91908425 | MS.gene053154:CDS |
| TGATGCAGACTCATCAGGAT+TGG | 0.539391 | 4.2:-91908112 | None:intergenic |
| GTATTCATGGTGTTGATTCG+CGG | 0.540049 | 4.2:+91906427 | MS.gene053154:CDS |
| ATAAATTGCGGAACAAGTGA+AGG | 0.554129 | 4.2:+91908141 | MS.gene053154:CDS |
| TCCGGAGAAATTGGCATGGA+AGG | 0.555042 | 4.2:-91907421 | None:intergenic |
| GAGCGCTTAGGGACCTATCA+AGG | 0.562951 | 4.2:+91908799 | MS.gene053154:CDS |
| ACACTTTAATAATGGATCAA+GGG | 0.566567 | 4.2:+91906628 | MS.gene053154:CDS |
| TCAATGAAGCTAATCTCTGA+GGG | 0.569675 | 4.2:-91907568 | None:intergenic |
| TGGAGAATTATGTGCCGGCA+AGG | 0.571633 | 4.2:-91908829 | None:intergenic |
| GGGTTGCACCATATGAGCAA+TGG | 0.573516 | 4.2:+91906501 | MS.gene053154:CDS |
| GGCATGGAAGGTAAGGTTGG+AGG | 0.573711 | 4.2:-91907409 | None:intergenic |
| GACGATCAAAATAACGGCGG+TGG | 0.573965 | 4.2:+91906537 | MS.gene053154:CDS |
| CAATGCTTGTGGACTTATGT+GGG | 0.580586 | 4.2:+91908436 | MS.gene053154:CDS |
| TTTAATGGAGAATTATGTGC+CGG | 0.581798 | 4.2:-91908834 | None:intergenic |
| TAGATTTCGTGAAAAGCGGA+AGG | 0.584600 | 4.2:+91907592 | MS.gene053154:CDS |
| ATATGCCATATGAACATCAC+GGG | 0.590381 | 4.2:+91906481 | MS.gene053154:CDS |
| TAATGTAAAGGTCTGTCATG+AGG | 0.590668 | 4.2:-91909009 | None:intergenic |
| AATGTAAAGGTCTGTCATGA+GGG | 0.591336 | 4.2:-91909008 | None:intergenic |
| TTCGTAAAGAAGTAGCACTA+AGG | 0.592761 | 4.2:+91907648 | MS.gene053154:CDS |
| TGATTAGATTTCGTGAAAAG+CGG | 0.593015 | 4.2:+91907588 | MS.gene053154:CDS |
| ATCAATGAAGCTAATCTCTG+AGG | 0.598501 | 4.2:-91907569 | None:intergenic |
| ATGGATGACGATCAAAATAA+CGG | 0.601177 | 4.2:+91906531 | MS.gene053154:CDS |
| TGATGCGGCGTGGACCTGAA+GGG | 0.602634 | 4.2:+91908399 | MS.gene053154:CDS |
| CTGTACTACTGTTATTGGGA+GGG | 0.609779 | 4.2:+91907377 | MS.gene053154:CDS |
| CATATGCCATATGAACATCA+CGG | 0.625092 | 4.2:+91906480 | MS.gene053154:CDS |
| AGAAGTGCACGCCAATGATG+CGG | 0.629029 | 4.2:+91908384 | MS.gene053154:CDS |
| TCTGTACTACTGTTATTGGG+AGG | 0.631795 | 4.2:+91907376 | MS.gene053154:CDS |
| TATGAGCAATGGGAATGAGA+TGG | 0.632606 | 4.2:+91906512 | MS.gene053154:CDS |
| TGATTCTAACTGTGAGAGTG+CGG | 0.641752 | 4.2:+91906563 | MS.gene053154:CDS |
| CATGTCAGTTGTAGGCATTG+TGG | 0.641895 | 4.2:+91908353 | MS.gene053154:intron |
| GCATCAGCTGAAATAAATTG+CGG | 0.642078 | 4.2:+91908129 | MS.gene053154:CDS |
| TTCGTCCGGAGAAATTGGCA+TGG | 0.650275 | 4.2:-91907425 | None:intergenic |
| TAAGTCCACAAGCATTGCAG+AGG | 0.655536 | 4.2:-91908430 | None:intergenic |
| TTCTCCGGACGAAAATAACC+GGG | 0.655712 | 4.2:+91907435 | MS.gene053154:CDS |
| TGCACGCCAATGATGCGGCG+TGG | 0.659677 | 4.2:+91908389 | MS.gene053154:CDS |
| AAGTCCACAAGCATTGCAGA+GGG | 0.674174 | 4.2:-91908429 | None:intergenic |
| TCTAACTGTGAGAGTGCGGA+AGG | 0.681298 | 4.2:+91906567 | MS.gene053154:CDS |
| GATGACGATCAAAATAACGG+CGG | 0.778224 | 4.2:+91906534 | MS.gene053154:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAATTTATAATAATCTT+AGG | + | chr4.2:91907335-91907354 | MS.gene053154:intron | 10.0% |
| !! | GTATTCTAATCTATATATTA+TGG | + | chr4.2:91908255-91908274 | MS.gene053154:intron | 15.0% |
| !!! | ATTTTCAGAAATAATGAAAA+CGG | + | chr4.2:91906886-91906905 | MS.gene053154:intron | 15.0% |
| !!! | TTCATTTTAAATTTCTAACA+AGG | + | chr4.2:91906796-91906815 | MS.gene053154:intron | 15.0% |
| !! | AAACGAATAAATCAAAAAGA+AGG | - | chr4.2:91908752-91908771 | None:intergenic | 20.0% |
| !! | ATATAGAAAAACAATGTTGT+CGG | - | chr4.2:91908016-91908035 | None:intergenic | 20.0% |
| !! | CATACTATCTATGATAAAAT+AGG | - | chr4.2:91907205-91907224 | None:intergenic | 20.0% |
| !! | TATATATATGCTTATGAACT+AGG | - | chr4.2:91907176-91907195 | None:intergenic | 20.0% |
| !! | TCATTTCAACTAATAATCAT+AGG | - | chr4.2:91907825-91907844 | None:intergenic | 20.0% |
| !!! | ACATTTTATTAGGGATTTAT+TGG | + | chr4.2:91907524-91907543 | MS.gene053154:intron | 20.0% |
| !!! | ATAATTTTGTATAGCAACAT+AGG | - | chr4.2:91908522-91908541 | None:intergenic | 20.0% |
| !!! | TCATTTTCGTTTAGAATTTT+CGG | - | chr4.2:91906956-91906975 | None:intergenic | 20.0% |
| !!! | TTGACTTTTTAAAACATTTC+TGG | + | chr4.2:91906913-91906932 | MS.gene053154:intron | 20.0% |
| ! | AAAATGAAAACAGGATACAT+GGG | + | chr4.2:91907028-91907047 | MS.gene053154:intron | 25.0% |
| ! | AATTCTAAACGAAAATGATG+AGG | + | chr4.2:91906958-91906977 | MS.gene053154:intron | 25.0% |
| ! | ACTATCTATGATAAAATAGG+AGG | - | chr4.2:91907202-91907221 | None:intergenic | 25.0% |
| ! | ATTCTAAACGAAAATGATGA+GGG | + | chr4.2:91906959-91906978 | MS.gene053154:intron | 25.0% |
| ! | CTAATACGAAAAACTTCTTT+AGG | + | chr4.2:91908052-91908071 | MS.gene053154:intron | 25.0% |
| ! | CTAGAAGATTATCATACATA+CGG | - | chr4.2:91907913-91907932 | None:intergenic | 25.0% |
| ! | CTATCTATGATAAAATAGGA+GGG | - | chr4.2:91907201-91907220 | None:intergenic | 25.0% |
| ! | GGTTGAAATTCTTCAAAATA+AGG | - | chr4.2:91908306-91908325 | None:intergenic | 25.0% |
| ! | TCGACATATCAATGATAAAA+TGG | - | chr4.2:91908606-91908625 | None:intergenic | 25.0% |
| ! | TGACAATCACACTTTAATAA+TGG | + | chr4.2:91906620-91906639 | MS.gene053154:CDS | 25.0% |
| !! | GCTCATGAAACATTTTATTA+GGG | + | chr4.2:91907515-91907534 | MS.gene053154:intron | 25.0% |
| !! | TTTAGGATGCAAAGAAATAA+AGG | + | chr4.2:91908069-91908088 | MS.gene053154:intron | 25.0% |
| !! | TTTTCAGAATAATAATTCCG+AGG | + | chr4.2:91908953-91908972 | MS.gene053154:intron | 25.0% |
| !! | TTTTTCGTATTAGTTAGCAA+GGG | - | chr4.2:91908045-91908064 | None:intergenic | 25.0% |
| !!! | ACACTTTAATAATGGATCAA+GGG | + | chr4.2:91906628-91906647 | MS.gene053154:CDS | 25.0% |
| !!! | ATATATTATGGTTGACTTGA+TGG | + | chr4.2:91908267-91908286 | MS.gene053154:intron | 25.0% |
| !!! | TTTTCATTTTTTGAACCACA+GGG | + | chr4.2:91908777-91908796 | MS.gene053154:intron | 25.0% |
| AAAAGATAGCAATTGACATG+AGG | - | chr4.2:91908492-91908511 | None:intergenic | 30.0% | |
| AAGAAAGACTATTTCAGTGT+AGG | - | chr4.2:91908327-91908346 | None:intergenic | 30.0% | |
| ATATATGCTTATGAACTAGG+AGG | - | chr4.2:91907173-91907192 | None:intergenic | 30.0% | |
| ATCCATTGTTAATCCTGTTA+TGG | + | chr4.2:91907282-91907301 | MS.gene053154:intron | 30.0% | |
| ATGGATGACGATCAAAATAA+CGG | + | chr4.2:91906531-91906550 | MS.gene053154:CDS | 30.0% | |
| ATGTAGTGAATAACTGTGAT+AGG | + | chr4.2:91906832-91906851 | MS.gene053154:intron | 30.0% | |
| CAATCTGTACTACTGTTATT+GGG | + | chr4.2:91907373-91907392 | MS.gene053154:CDS | 30.0% | |
| CAGGAAACATAGAGATTAAA+TGG | + | chr4.2:91907854-91907873 | MS.gene053154:intron | 30.0% | |
| CATTCAACTTGATTCAGATT+TGG | + | chr4.2:91908673-91908692 | MS.gene053154:intron | 30.0% | |
| GAAAATGAAAACAGGATACA+TGG | + | chr4.2:91907027-91907046 | MS.gene053154:intron | 30.0% | |
| GTATTACTACATTACTTGGT+TGG | + | chr4.2:91907457-91907476 | MS.gene053154:intron | 30.0% | |
| GTTGAAATGAAACTGAAAAC+AGG | + | chr4.2:91907835-91907854 | MS.gene053154:intron | 30.0% | |
| GTTGAAGTGAAAATGAAAAC+AGG | + | chr4.2:91907019-91907038 | MS.gene053154:intron | 30.0% | |
| TATATGCTTATGAACTAGGA+GGG | - | chr4.2:91907172-91907191 | None:intergenic | 30.0% | |
| TCAATCTGTACTACTGTTAT+TGG | + | chr4.2:91907372-91907391 | MS.gene053154:CDS | 30.0% | |
| TGATTAGATTTCGTGAAAAG+CGG | + | chr4.2:91907588-91907607 | MS.gene053154:CDS | 30.0% | |
| TGTCCGAAAAATAATCGAAA+AGG | + | chr4.2:91908549-91908568 | MS.gene053154:intron | 30.0% | |
| TGTTCATATGGCATATGTAT+AGG | - | chr4.2:91906477-91906496 | None:intergenic | 30.0% | |
| TTCTCCATTAAACAAGAATG+AGG | + | chr4.2:91908845-91908864 | MS.gene053154:CDS | 30.0% | |
| TTTAATGGAGAATTATGTGC+CGG | - | chr4.2:91908837-91908856 | None:intergenic | 30.0% | |
| ! | GACTAACTTTTCTTCTAACT+TGG | + | chr4.2:91907143-91907162 | MS.gene053154:intron | 30.0% |
| ! | GGCTCATGAAACATTTTATT+AGG | + | chr4.2:91907514-91907533 | MS.gene053154:intron | 30.0% |
| ! | GTTTTTCGTATTAGTTAGCA+AGG | - | chr4.2:91908046-91908065 | None:intergenic | 30.0% |
| ! | TCAACCTCATTCTTGTTTAA+TGG | - | chr4.2:91908852-91908871 | None:intergenic | 30.0% |
| !! | CAAATCTGAATCAAGTTGAA+TGG | - | chr4.2:91908675-91908694 | None:intergenic | 30.0% |
| !! | CACACTTTAATAATGGATCA+AGG | + | chr4.2:91906627-91906646 | MS.gene053154:CDS | 30.0% |
| !! | GGACCTTTTCGATTATTTTT+CGG | - | chr4.2:91908555-91908574 | None:intergenic | 30.0% |
| !!! | ATAAGTTGATGAACCTTTTC+TGG | - | chr4.2:91906720-91906739 | None:intergenic | 30.0% |
| !!! | ATTTGGCTTTTATACTCGAA+TGG | + | chr4.2:91908690-91908709 | MS.gene053154:intron | 30.0% |
| !!! | GATGTTTGGTTTTTCTTTTC+TGG | + | chr4.2:91907075-91907094 | MS.gene053154:intron | 30.0% |
| !!! | GTTTTCATTTTTTGAACCAC+AGG | + | chr4.2:91908776-91908795 | MS.gene053154:intron | 30.0% |
| AAAAACAATGTTGTCGGTCA+TGG | - | chr4.2:91908010-91908029 | None:intergenic | 35.0% | |
| AAAGAAGTAGCACTAAGGTA+TGG | + | chr4.2:91907653-91907672 | MS.gene053154:intron | 35.0% | |
| ACCAAACATCCTTAAAAGCA+AGG | - | chr4.2:91907065-91907084 | None:intergenic | 35.0% | |
| ATAAATTGCGGAACAAGTGA+AGG | + | chr4.2:91908141-91908160 | MS.gene053154:CDS | 35.0% | |
| ATATGCCATATGAACATCAC+GGG | + | chr4.2:91906481-91906500 | MS.gene053154:CDS | 35.0% | |
| ATCAATGAAGCTAATCTCTG+AGG | - | chr4.2:91907572-91907591 | None:intergenic | 35.0% | |
| ATGGATCAAGGGAATGATAT+TGG | + | chr4.2:91906639-91906658 | MS.gene053154:CDS | 35.0% | |
| ATGTGGGCAAATAAGGTAAA+TGG | + | chr4.2:91908452-91908471 | MS.gene053154:intron | 35.0% | |
| CATATGCCATATGAACATCA+CGG | + | chr4.2:91906480-91906499 | MS.gene053154:CDS | 35.0% | |
| CCAAGTAATGTAGTAATACC+CGG | - | chr4.2:91907456-91907475 | None:intergenic | 35.0% | |
| CTAAAATCAAACCCTTTGCA+GGG | - | chr4.2:91907314-91907333 | None:intergenic | 35.0% | |
| GAAGATCTAAGTTCCTATGT+TGG | - | chr4.2:91908915-91908934 | None:intergenic | 35.0% | |
| GCATCAGCTGAAATAAATTG+CGG | + | chr4.2:91908129-91908148 | MS.gene053154:CDS | 35.0% | |
| GTCATGAAGATTTCCATTGT+TGG | - | chr4.2:91906604-91906623 | None:intergenic | 35.0% | |
| GTCCATAACAGGATTAACAA+TGG | - | chr4.2:91907287-91907306 | None:intergenic | 35.0% | |
| TAACTGTGATAGGAAGAAGA+TGG | + | chr4.2:91906842-91906861 | MS.gene053154:intron | 35.0% | |
| TATAGGATGTTGTTCATCAC+TGG | - | chr4.2:91906460-91906479 | None:intergenic | 35.0% | |
| TCAATGAAGCTAATCTCTGA+GGG | - | chr4.2:91907571-91907590 | None:intergenic | 35.0% | |
| TGGATCTGTTTACGATGAAT+TGG | - | chr4.2:91908655-91908674 | None:intergenic | 35.0% | |
| TTCGTAAAGAAGTAGCACTA+AGG | + | chr4.2:91907648-91907667 | MS.gene053154:CDS | 35.0% | |
| TTTCAACTCATGTCAGTTGT+AGG | + | chr4.2:91908345-91908364 | MS.gene053154:intron | 35.0% | |
| ! | CAGCTTACTTTGTCTTTTCA+GGG | + | chr4.2:91906666-91906685 | MS.gene053154:CDS | 35.0% |
| ! | GTACTTTGTTGTCGATGAAT+TGG | + | chr4.2:91907103-91907122 | MS.gene053154:intron | 35.0% |
| ! | GTTTTTGCTGGTCAAATATC+TGG | + | chr4.2:91907493-91907512 | MS.gene053154:intron | 35.0% |
| ! | TCAGCTTACTTTGTCTTTTC+AGG | + | chr4.2:91906665-91906684 | MS.gene053154:CDS | 35.0% |
| ! | TCTAAAATCAAACCCTTTGC+AGG | - | chr4.2:91907315-91907334 | None:intergenic | 35.0% |
| ! | TTATTTTCGTCCGGAGAAAT+TGG | - | chr4.2:91907433-91907452 | None:intergenic | 35.0% |
| !! | GTTCGATTGATAGTTTTTGC+TGG | + | chr4.2:91907481-91907500 | MS.gene053154:intron | 35.0% |
| !! | TAATCTTAGGTGTCATTGCT+AGG | + | chr4.2:91907348-91907367 | MS.gene053154:intron | 35.0% |
| !! | TGGCTCATTTTTGAACAAGA+GGG | + | chr4.2:91908216-91908235 | MS.gene053154:intron | 35.0% |
| AAGATACCGTGTAAGTTCAC+TGG | + | chr4.2:91908196-91908215 | MS.gene053154:intron | 40.0% | |
| AATGAGCCAGTGAACTTACA+CGG | - | chr4.2:91908205-91908224 | None:intergenic | 40.0% | |
| ACAGGATACATGGGAAGTAA+TGG | + | chr4.2:91907037-91907056 | MS.gene053154:intron | 40.0% | |
| AGAAATTGGCATGGAAGGTA+AGG | - | chr4.2:91907419-91907438 | None:intergenic | 40.0% | |
| CAATGCTTGTGGACTTATGT+GGG | + | chr4.2:91908436-91908455 | MS.gene053154:CDS | 40.0% | |
| CAATTATAACACACGCCTCA+AGG | - | chr4.2:91907240-91907259 | None:intergenic | 40.0% | |
| CCGGGTATTACTACATTACT+TGG | + | chr4.2:91907453-91907472 | MS.gene053154:intron | 40.0% | |
| CTGTACTACTGTTATTGGGA+GGG | + | chr4.2:91907377-91907396 | MS.gene053154:CDS | 40.0% | |
| GAAGATTTCCATTGTTGGAG+TGG | - | chr4.2:91906599-91906618 | None:intergenic | 40.0% | |
| GATGACGATCAAAATAACGG+CGG | + | chr4.2:91906534-91906553 | MS.gene053154:CDS | 40.0% | |
| GATGTTTCTCTTGCCAACAT+AGG | + | chr4.2:91908899-91908918 | MS.gene053154:intron | 40.0% | |
| GGTTTGACGGTAGACAATAA+TGG | + | chr4.2:91908162-91908181 | MS.gene053154:CDS | 40.0% | |
| TAGATTTCGTGAAAAGCGGA+AGG | + | chr4.2:91907592-91907611 | MS.gene053154:CDS | 40.0% | |
| TATGAGCAATGGGAATGAGA+TGG | + | chr4.2:91906512-91906531 | MS.gene053154:CDS | 40.0% | |
| TCTCATTCCCATTGCTCATA+TGG | - | chr4.2:91906512-91906531 | None:intergenic | 40.0% | |
| TCTGTACTACTGTTATTGGG+AGG | + | chr4.2:91907376-91907395 | MS.gene053154:CDS | 40.0% | |
| TGATTCTAACTGTGAGAGTG+CGG | + | chr4.2:91906563-91906582 | MS.gene053154:CDS | 40.0% | |
| TGGACTTATGTGGGCAAATA+AGG | + | chr4.2:91908445-91908464 | MS.gene053154:CDS | 40.0% | |
| TGGACTTGGCAGATGTAAAT+TGG | - | chr4.2:91908095-91908114 | None:intergenic | 40.0% | |
| TTTCTCCGGACGAAAATAAC+CGG | + | chr4.2:91907434-91907453 | MS.gene053154:CDS | 40.0% | |
| ! | AGGCACAGTTGTTTGTTGAA+AGG | - | chr4.2:91908732-91908751 | None:intergenic | 40.0% |
| ! | ATCTCTAAGCACTGTCTGAT+TGG | - | chr4.2:91908979-91908998 | None:intergenic | 40.0% |
| ! | TATGGACTATTCCCTGCAAA+GGG | + | chr4.2:91907300-91907319 | MS.gene053154:intron | 40.0% |
| ! | TTATGGACTATTCCCTGCAA+AGG | + | chr4.2:91907299-91907318 | MS.gene053154:intron | 40.0% |
| !! | AATACCCGGTTATTTTCGTC+CGG | - | chr4.2:91907442-91907461 | None:intergenic | 40.0% |
| !! | ATGAACCTTTTCTGGTGACA+CGG | - | chr4.2:91906712-91906731 | None:intergenic | 40.0% |
| !! | CTGGCTCATTTTTGAACAAG+AGG | + | chr4.2:91908215-91908234 | MS.gene053154:intron | 40.0% |
| !! | GCCTTGCTTTTAAGGATGTT+TGG | + | chr4.2:91907061-91907080 | MS.gene053154:intron | 40.0% |
| !! | GTAATGGAGCCTTGCTTTTA+AGG | + | chr4.2:91907053-91907072 | MS.gene053154:intron | 40.0% |
| !! | GTATTCATGGTGTTGATTCG+CGG | + | chr4.2:91906427-91906446 | MS.gene053154:CDS | 40.0% |
| !! | TTACACGGTATCTTGCTGTT+GGG | - | chr4.2:91908190-91908209 | None:intergenic | 40.0% |
| ACAGAACTCCATTGGAGTGT+CGG | - | chr4.2:91907883-91907902 | None:intergenic | 45.0% | |
| ACCTTCCATGCCAATTTCTC+CGG | + | chr4.2:91907420-91907439 | MS.gene053154:CDS | 45.0% | |
| AGACTCATCAGGATTGGACT+TGG | - | chr4.2:91908109-91908128 | None:intergenic | 45.0% | |
| ATCGAAAAGGTCCATGACTG+TGG | + | chr4.2:91908562-91908581 | MS.gene053154:intron | 45.0% | |
| ATGCAGTTTAACACGCCTTG+AGG | + | chr4.2:91907222-91907241 | MS.gene053154:intron | 45.0% | |
| ATTGGCATGGAAGGTAAGGT+TGG | - | chr4.2:91907415-91907434 | None:intergenic | 45.0% | |
| CGGAACAAGTGAAGGTTTGA+CGG | + | chr4.2:91908149-91908168 | MS.gene053154:CDS | 45.0% | |
| GCAATGCTTGTGGACTTATG+TGG | + | chr4.2:91908435-91908454 | MS.gene053154:CDS | 45.0% | |
| GGTGAAATCCACTCCAACAA+TGG | + | chr4.2:91906588-91906607 | MS.gene053154:CDS | 45.0% | |
| GGTTGCACCATATGAGCAAT+GGG | + | chr4.2:91906502-91906521 | MS.gene053154:CDS | 45.0% | |
| GTGTTACGACAGAACTCCAT+TGG | - | chr4.2:91907891-91907910 | None:intergenic | 45.0% | |
| TAAACCACAGTCCACAGTCA+TGG | - | chr4.2:91908576-91908595 | None:intergenic | 45.0% | |
| TGATGCAGACTCATCAGGAT+TGG | - | chr4.2:91908115-91908134 | None:intergenic | 45.0% | |
| TGCAACCCGTGATGTTCATA+TGG | - | chr4.2:91906489-91906508 | None:intergenic | 45.0% | |
| TGCAGGGAATAGTCCATAAC+AGG | - | chr4.2:91907298-91907317 | None:intergenic | 45.0% | |
| TTCTCCGGACGAAAATAACC+GGG | + | chr4.2:91907435-91907454 | MS.gene053154:CDS | 45.0% | |
| ! | AAGTCCACAAGCATTGCAGA+GGG | - | chr4.2:91908432-91908451 | None:intergenic | 45.0% |
| ! | CATGTCAGTTGTAGGCATTG+TGG | + | chr4.2:91908353-91908372 | MS.gene053154:intron | 45.0% |
| ! | CTTACACGGTATCTTGCTGT+TGG | - | chr4.2:91908191-91908210 | None:intergenic | 45.0% |
| ! | TAAGTCCACAAGCATTGCAG+AGG | - | chr4.2:91908433-91908452 | None:intergenic | 45.0% |
| AGAACCCTCTGCAATGCTTG+TGG | + | chr4.2:91908425-91908444 | MS.gene053154:CDS | 50.0% | |
| ATCAAGGACAGCAACCTTGC+CGG | + | chr4.2:91908815-91908834 | MS.gene053154:CDS | 50.0% | |
| GACGATCAAAATAACGGCGG+TGG | + | chr4.2:91906537-91906556 | MS.gene053154:CDS | 50.0% | |
| GATCAAAATAACGGCGGTGG+CGG | + | chr4.2:91906540-91906559 | MS.gene053154:CDS | 50.0% | |
| GCAAGGTTGCTGTCCTTGAT+AGG | - | chr4.2:91908815-91908834 | None:intergenic | 50.0% | |
| GGGTTGCACCATATGAGCAA+TGG | + | chr4.2:91906501-91906520 | MS.gene053154:CDS | 50.0% | |
| TCAGCTGATGCAGACTCATC+AGG | - | chr4.2:91908120-91908139 | None:intergenic | 50.0% | |
| TCCGGAGAAATTGGCATGGA+AGG | - | chr4.2:91907424-91907443 | None:intergenic | 50.0% | |
| TGACTCCGTGTCACCAGAAA+AGG | + | chr4.2:91906704-91906723 | MS.gene053154:CDS | 50.0% | |
| TTCGTCCGGAGAAATTGGCA+TGG | - | chr4.2:91907428-91907447 | None:intergenic | 50.0% | |
| ! | AGAAGTGCACGCCAATGATG+CGG | + | chr4.2:91908384-91908403 | MS.gene053154:CDS | 50.0% |
| ! | CAAGCATTGCAGAGGGTTCT+TGG | - | chr4.2:91908425-91908444 | None:intergenic | 50.0% |
| ! | CAGAACTCCATTGGAGTGTC+GGG | - | chr4.2:91907882-91907901 | None:intergenic | 50.0% |
| ! | TCTAACTGTGAGAGTGCGGA+AGG | + | chr4.2:91906567-91906586 | MS.gene053154:CDS | 50.0% |
| ! | TGAGGGACGCTGAGTTTTTC+TGG | - | chr4.2:91907554-91907573 | None:intergenic | 50.0% |
| ! | TGGAGAATTATGTGCCGGCA+AGG | - | chr4.2:91908832-91908851 | None:intergenic | 50.0% |
| !! | AAGCACTGTCTGATTGGCCT+CGG | - | chr4.2:91908973-91908992 | None:intergenic | 50.0% |
| !! | AGAACTCCATTGGAGTGTCG+GGG | - | chr4.2:91907881-91907900 | None:intergenic | 50.0% |
| AATGGACCCCGACACTCCAA+TGG | + | chr4.2:91907872-91907891 | MS.gene053154:intron | 55.0% | |
| CAATGTTGTCGGTCATGGCG+TGG | - | chr4.2:91908005-91908024 | None:intergenic | 55.0% | |
| GAGCGCTTAGGGACCTATCA+AGG | + | chr4.2:91908799-91908818 | MS.gene053154:CDS | 55.0% | |
| GGCATGGAAGGTAAGGTTGG+AGG | - | chr4.2:91907412-91907431 | None:intergenic | 55.0% | |
| GTCGGTCATGGCGTGGATTT+AGG | - | chr4.2:91907998-91908017 | None:intergenic | 55.0% | |
| ! | AGGTCCATGACTGTGGACTG+TGG | + | chr4.2:91908569-91908588 | MS.gene053154:intron | 55.0% |
| !! | TGAACCACAGGGAGCGCTTA+GGG | + | chr4.2:91908788-91908807 | MS.gene053154:intron | 55.0% |
| !! | TTGAACCACAGGGAGCGCTT+AGG | + | chr4.2:91908787-91908806 | MS.gene053154:intron | 55.0% |
| ATGATGCGGCGTGGACCTGA+AGG | + | chr4.2:91908398-91908417 | MS.gene053154:CDS | 60.0% | |
| CAGAGGGTTCTTGGCCCTTC+AGG | - | chr4.2:91908416-91908435 | None:intergenic | 60.0% | |
| TCAGGTCCACGCCGCATCAT+TGG | - | chr4.2:91908398-91908417 | None:intergenic | 60.0% | |
| TGATGCGGCGTGGACCTGAA+GGG | + | chr4.2:91908399-91908418 | MS.gene053154:CDS | 60.0% | |
| AGGTCCCTAAGCGCTCCCTG+TGG | - | chr4.2:91908795-91908814 | None:intergenic | 65.0% | |
| TGCACGCCAATGATGCGGCG+TGG | + | chr4.2:91908389-91908408 | MS.gene053154:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4.2 | gene | 91906420 | 91909016 | 91906420 | ID=MS.gene053154 |
| chr4.2 | mRNA | 91906420 | 91909016 | 91906420 | ID=MS.gene053154.t1;Parent=MS.gene053154 |
| chr4.2 | exon | 91906420 | 91906725 | 91906420 | ID=MS.gene053154.t1.exon1;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91906420 | 91906725 | 91906420 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| chr4.2 | exon | 91907370 | 91907456 | 91907370 | ID=MS.gene053154.t1.exon2;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91907370 | 91907456 | 91907370 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| chr4.2 | exon | 91907536 | 91907669 | 91907536 | ID=MS.gene053154.t1.exon3;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91907536 | 91907669 | 91907536 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| chr4.2 | exon | 91908074 | 91908205 | 91908074 | ID=MS.gene053154.t1.exon4;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91908074 | 91908205 | 91908074 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| chr4.2 | exon | 91908361 | 91908466 | 91908361 | ID=MS.gene053154.t1.exon5;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91908361 | 91908466 | 91908361 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| chr4.2 | exon | 91908798 | 91908866 | 91908798 | ID=MS.gene053154.t1.exon6;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91908798 | 91908866 | 91908798 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| chr4.2 | exon | 91908960 | 91909016 | 91908960 | ID=MS.gene053154.t1.exon7;Parent=MS.gene053154.t1 |
| chr4.2 | CDS | 91908960 | 91909016 | 91908960 | ID=cds.MS.gene053154.t1;Parent=MS.gene053154.t1 |
| Gene Sequence |
| Protein sequence |
