AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene61879

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61879.t1 MTR_2g047180 59.580 381 123 9 6 371 3 367 2.47e-145 416
MS.gene61879.t1 MTR_1g007260 61.640 378 122 12 1 365 16 383 3.97e-142 409
MS.gene61879.t1 MTR_1g026850 59.893 374 129 9 5 370 4 364 1.06e-134 389
MS.gene61879.t1 MTR_3g030080 53.708 391 147 8 1 373 1 375 4.55e-132 383
MS.gene61879.t1 MTR_6g018360 55.155 388 149 10 4 372 2 383 1.23e-127 373
MS.gene61879.t1 MTR_6g018390 56.842 380 130 13 6 369 4 365 3.83e-127 370
MS.gene61879.t1 MTR_3g029650 55.867 392 122 12 4 373 2 364 4.13e-122 370
MS.gene61879.t1 MTR_3g029650 49.246 398 161 15 2 371 367 751 2.54e-98 308
MS.gene61879.t1 MTR_6g027100 51.928 389 155 10 4 372 2 378 7.52e-122 359
MS.gene61879.t1 MTR_6g018315 55.319 376 139 10 18 372 1 368 2.83e-121 356
MS.gene61879.t1 MTR_6g027040 50.900 389 159 10 4 372 2 378 9.73e-119 349
MS.gene61879.t1 MTR_6g018400 51.823 384 146 12 6 369 4 368 1.15e-114 338
MS.gene61879.t1 MTR_3g029670 50.248 404 147 14 4 371 2 387 8.31e-108 322
MS.gene61879.t1 MTR_1g016570 50.392 383 140 14 2 371 16 361 1.48e-105 315
MS.gene61879.t1 MTR_3g030360 48.831 385 144 12 5 371 3 352 2.01e-105 314
MS.gene61879.t1 MTR_3g029750 49.257 404 151 14 4 371 2 387 2.86e-104 312
MS.gene61879.t1 MTR_3g029920 47.194 392 164 12 5 371 7 380 8.87e-104 311
MS.gene61879.t1 MTR_3g092000 49.052 422 142 17 1 371 1 400 1.86e-103 311
MS.gene61879.t1 MTR_3g030380 50.129 387 144 14 4 371 2 358 7.10e-103 308
MS.gene61879.t1 MTR_3g030440 49.610 385 144 15 3 369 2 354 3.36e-101 303
MS.gene61879.t1 MTR_3g030480 49.479 384 144 15 4 369 2 353 1.54e-100 302
MS.gene61879.t1 MTR_3g091990 46.437 407 162 14 1 371 1 387 1.46e-96 294
MS.gene61879.t1 MTR_3g030355 45.024 422 154 17 1 371 1 395 2.03e-91 280
MS.gene61879.t1 MTR_3g029620 45.013 391 172 15 6 371 2 374 8.83e-88 270
MS.gene61879.t1 MTR_3g029640 46.114 386 163 15 6 370 3 364 1.12e-87 269
MS.gene61879.t1 MTR_3g029840 47.632 380 162 17 4 371 2 356 1.89e-87 268
MS.gene61879.t1 MTR_1g049170 44.039 411 160 17 1 369 1 383 5.04e-87 268
MS.gene61879.t1 MTR_3g029800 44.503 382 169 15 6 371 3 357 6.20e-85 262
MS.gene61879.t1 MTR_3g030560 44.103 390 178 15 5 371 2 374 1.11e-84 262
MS.gene61879.t1 MTR_3g029950 45.524 391 166 16 4 371 2 368 4.95e-84 260
MS.gene61879.t1 MTR_3g030050 40.189 423 187 13 2 370 11 421 5.61e-84 261
MS.gene61879.t1 MTR_6g018370 50.000 314 96 10 5 313 2 259 3.99e-79 244
MS.gene61879.t1 MTR_7g005990 43.152 387 170 13 5 371 2 358 1.11e-74 236
MS.gene61879.t1 MTR_3g029820 42.455 391 128 16 7 371 9 328 7.72e-72 228
MS.gene61879.t1 MTR_3g029870 42.931 389 146 17 4 371 2 335 8.32e-72 228
MS.gene61879.t1 MTR_3g047980 43.850 374 157 15 7 370 30 360 1.37e-69 223
MS.gene61879.t1 MTR_3g058460 39.844 384 189 14 7 370 15 376 6.41e-67 216
MS.gene61879.t1 MTR_3g029900 44.795 317 139 13 67 370 165 458 4.32e-63 209
MS.gene61879.t1 MTR_1g007220 55.941 202 50 6 164 362 2 167 1.59e-56 182
MS.gene61879.t1 MTR_1g007250 65.089 169 47 6 197 362 1 160 5.09e-54 176
MS.gene61879.t1 MTR_5g042230 58.065 186 62 6 183 360 13 190 6.50e-53 174
MS.gene61879.t1 MTR_3g037710 42.412 257 118 9 130 372 25 265 3.78e-51 172
MS.gene61879.t1 MTR_1g016540 50.267 187 74 4 197 371 1 180 1.40e-46 157
MS.gene61879.t1 MTR_8g074610 28.354 395 229 15 6 369 24 395 1.23e-33 129
MS.gene61879.t1 MTR_5g078450 55.862 145 34 5 231 371 1 119 4.87e-33 120
MS.gene61879.t1 MTR_2g041510 29.000 400 204 16 5 363 4 364 7.65e-31 121
MS.gene61879.t1 MTR_2g041510 29.000 400 204 16 5 363 24 384 1.15e-30 120
MS.gene61879.t1 MTR_1g007200 68.132 91 29 0 277 367 16 106 1.93e-30 113
MS.gene61879.t1 MTR_1g007230 62.069 87 32 1 1 87 3 88 8.97e-29 107
MS.gene61879.t1 MTR_4g022880 41.860 172 77 5 208 370 15 172 1.58e-28 110
MS.gene61879.t1 MTR_8g074640 28.607 402 220 19 5 369 4 375 6.17e-27 110
MS.gene61879.t1 MTR_8g032080 49.505 101 40 3 123 216 3 99 1.35e-20 91.7
MS.gene61879.t1 MTR_6g009100 43.571 140 42 6 6 134 3 116 6.95e-20 84.7
MS.gene61879.t1 MTR_7g012990 46.341 123 49 2 141 263 48 153 1.08e-19 85.5
MS.gene61879.t1 MTR_8g035995 53.763 93 32 5 214 304 9 92 5.32e-18 80.5
MS.gene61879.t1 MTR_6g075925 77.273 44 10 0 4 47 2 45 3.66e-17 76.3
MS.gene61879.t1 MTR_6g092570 23.894 339 221 10 1 327 2 315 4.96e-16 79.0
MS.gene61879.t1 MTR_6g009620 45.977 87 41 3 93 173 38 124 1.61e-14 70.1
MS.gene61879.t1 MTR_6g076200 76.596 47 11 0 4 50 2 48 1.54e-12 62.4
MS.gene61879.t1 MTR_6g018420 69.444 36 11 0 4 39 2 37 3.35e-12 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
MS.gene61879.t1 AT2G17030 34.223 412 208 16 6 373 2 394 5.67e-52 178
MS.gene61879.t1 AT2G17036 32.653 392 227 16 7 370 2 384 2.49e-47 166
MS.gene61879.t1 AT2G17036 32.653 392 227 16 7 370 3 385 2.71e-47 166
MS.gene61879.t1 AT5G60060 29.042 334 205 13 6 320 9 329 2.39e-24 103
MS.gene61879.t1 AT5G24040 25.654 382 248 11 8 369 4 369 1.66e-22 97.8
MS.gene61879.t1 AT2G26160 25.779 353 201 14 7 333 5 322 2.65e-17 82.4
MS.gene61879.t1 AT1G65770 26.111 360 242 15 6 356 2 346 2.46e-16 80.1
MS.gene61879.t1 AT3G25750 25.474 369 222 14 5 350 3 341 6.31e-15 75.9

Find 98 sgRNAs with CRISPR-Local

Find 117 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTAGAATATTCAGGATATT+TGG 0.162233 3.1:-22018706 None:intergenic
TCTTGCAAGTATTAATTTCT+TGG 0.210109 3.1:+22018455 MS.gene61879:CDS
CATAACAATTTAGAATATTC+AGG 0.267633 3.1:-22018714 None:intergenic
GGGTGAAGTTGGCGAATTTA+GGG 0.273559 3.1:+22018520 MS.gene61879:CDS
TTTCAATGGGTCGCCTTATC+TGG 0.284858 3.1:+22018266 MS.gene61879:CDS
AAAATGTTACAACGGTGATT+TGG 0.286056 3.1:-22017781 None:intergenic
GTGGCTGAACCTTTGGTTGA+TGG 0.316763 3.1:+22018345 MS.gene61879:CDS
AATGGTTTGGGTGGGAGATA+TGG 0.322797 3.1:-22017979 None:intergenic
TGGGTGAAGTTGGCGAATTT+AGG 0.324049 3.1:+22018519 MS.gene61879:CDS
AGGGAATTGTGTGATCATTA+TGG 0.329701 3.1:+22018617 MS.gene61879:CDS
TTCGATCAATTTGTTCCAAT+TGG 0.330753 3.1:+22017743 MS.gene61879:CDS
AAATGTTACAACGGTGATTT+GGG 0.340210 3.1:-22017780 None:intergenic
CTGAATATTCTAAATTGTTA+TGG 0.344183 3.1:+22018715 MS.gene61879:CDS
CAGATTCTCCCTCCTTCATT+TGG 0.350995 3.1:+22018029 MS.gene61879:CDS
CCAGTTAGTGGCTGAACCTT+TGG 0.355761 3.1:+22018338 MS.gene61879:CDS
TCCTGACATGTCGCCTTGCT+CGG 0.359645 3.1:+22018230 MS.gene61879:CDS
CCAAAGGTTCAGCCACTAAC+TGG 0.369613 3.1:-22018338 None:intergenic
AGCACAGGATTGAAAGGAAA+TGG 0.373099 3.1:-22017997 None:intergenic
ATCTGAGTAGTGGGTACTCC+AGG 0.374805 3.1:-22017807 None:intergenic
CAGATTTGTGTGTTGCTAAA+GGG 0.387719 3.1:+22018598 MS.gene61879:CDS
GGAGAAGAAGTGGGTGAAGT+TGG 0.400739 3.1:+22018509 MS.gene61879:CDS
GATAATATATCCACTTTATG+TGG 0.411499 3.1:+22018639 MS.gene61879:CDS
TGTGTTTAAGCTTAATGAAA+AGG 0.411651 3.1:+22018488 MS.gene61879:CDS
CCTTATCTGGTAGACAAAAC+TGG 0.412169 3.1:+22018279 MS.gene61879:CDS
AGGATTGAAAGGAAATGGTT+TGG 0.416366 3.1:-22017992 None:intergenic
GGATTGAAAGGAAATGGTTT+GGG 0.419911 3.1:-22017991 None:intergenic
GATGAGGAAGAAACTGTGTT+TGG 0.423904 3.1:-22017881 None:intergenic
CTAAGTGTGCCGAGTATGAT+AGG 0.423924 3.1:-22018147 None:intergenic
TGAAATGCGGCGATGAGAAT+TGG 0.427942 3.1:+22018199 MS.gene61879:CDS
TGGCGGGAAAAGAAAATTCT+TGG 0.433576 3.1:+22018368 MS.gene61879:CDS
CACCACCACATCACCGTCCT+TGG 0.453085 3.1:+22017908 MS.gene61879:CDS
GAATGAAGTATTGTTGTTGA+GGG 0.456327 3.1:-22017848 None:intergenic
CCCGAGCAAGGCGACATGTC+AGG 0.457783 3.1:-22018231 None:intergenic
GAACCTTTGGTTGATGGTGG+CGG 0.460372 3.1:+22018351 MS.gene61879:CDS
TCGCCGCATTTCAACAGTAC+TGG 0.461047 3.1:-22018189 None:intergenic
AAAACAGCTCCCACATAAAG+TGG 0.468733 3.1:-22018649 None:intergenic
GAGATATGGATGTAAGAGTT+GGG 0.470914 3.1:-22017965 None:intergenic
CCTGACATGTCGCCTTGCTC+GGG 0.472811 3.1:+22018231 MS.gene61879:CDS
CAAGTATTAATTTCTTGGTA+CGG 0.473932 3.1:+22018460 MS.gene61879:CDS
GTCTGCCTCTGCCGTCGCCA+TGG 0.477104 3.1:-22017647 None:intergenic
TTGGCGATCCACTCTGGAGG+TGG 0.481012 3.1:-22018738 None:intergenic
ATCAGATGAAGAAGATCCTT+CGG 0.489571 3.1:-22017682 None:intergenic
TCGAATGGGTATCTGAGTAG+TGG 0.491826 3.1:-22017817 None:intergenic
AACCTTTGGTTGATGGTGGC+GGG 0.492093 3.1:+22018352 MS.gene61879:CDS
TGGCGACGGCAGAGGCAGAC+TGG 0.501612 3.1:+22017650 MS.gene61879:CDS
CGACTCCACTGTCCAGTTAG+TGG 0.503077 3.1:+22018326 MS.gene61879:CDS
AGAATGAAGTATTGTTGTTG+AGG 0.504807 3.1:-22017849 None:intergenic
GATTGAGGAAGAGCGCCAAT+TGG 0.508882 3.1:-22017758 None:intergenic
TCAGATTTGTGTGTTGCTAA+AGG 0.511112 3.1:+22018597 MS.gene61879:CDS
GGAGATATGGATGTAAGAGT+TGG 0.511354 3.1:-22017966 None:intergenic
TATGAGTCTTTAGAGTTCGA+TGG 0.511537 3.1:+22018426 MS.gene61879:CDS
TTCATCCATGGCGACGGCAG+AGG 0.512568 3.1:+22017642 None:intergenic
AAAATTCTTGGTGGAGAGTG+AGG 0.513659 3.1:+22018380 MS.gene61879:CDS
TGAGGGAATCAATTTCGAAT+GGG 0.514429 3.1:-22017831 None:intergenic
AACTGGACAGTGGAGTCGTC+CGG 0.520658 3.1:-22018321 None:intergenic
TTGAGGGAATCAATTTCGAA+TGG 0.524973 3.1:-22017832 None:intergenic
ACAACGGTGATTTGGGATTG+AGG 0.530478 3.1:-22017773 None:intergenic
TGAAGTTAGTTACCAAATGA+AGG 0.536638 3.1:-22018041 None:intergenic
TCATCTGATATCACAACGAA+TGG 0.553104 3.1:+22017696 MS.gene61879:CDS
GATAAGGCGACCCATTGAAA+AGG 0.555789 3.1:-22018263 None:intergenic
TGAAAGGAAATGGTTTGGGT+GGG 0.556704 3.1:-22017987 None:intergenic
TTGAAAGGAAATGGTTTGGG+TGG 0.559535 3.1:-22017988 None:intergenic
TTAATGAAAAGGAGAAGAAG+TGG 0.562031 3.1:+22018499 MS.gene61879:CDS
GTACATTTCGGTATAGTGCA+AGG 0.562073 3.1:-22018085 None:intergenic
AATCTGTTAAAATTGAGCAC+AGG 0.563896 3.1:-22018012 None:intergenic
AAATTGAGCACAGGATTGAA+AGG 0.564433 3.1:-22018003 None:intergenic
CGAATGGGTATCTGAGTAGT+GGG 0.565433 3.1:-22017816 None:intergenic
CGGGAAAAGAAAATTCTTGG+TGG 0.567651 3.1:+22018371 MS.gene61879:CDS
TTCCCGCCACCATCAACCAA+AGG 0.571866 3.1:-22018354 None:intergenic
TACATTTCGGTATAGTGCAA+GGG 0.578026 3.1:-22018084 None:intergenic
AGGCAGATGTCTCCCGAGCA+AGG 0.579393 3.1:-22018243 None:intergenic
CAAGGACGGTGATGTGGTGG+TGG 0.579849 3.1:-22017907 None:intergenic
AAATTCTTGGTGGAGAGTGA+GGG 0.579999 3.1:+22018381 MS.gene61879:CDS
TAATGAAAAGGAGAAGAAGT+GGG 0.584827 3.1:+22018500 MS.gene61879:CDS
ATAATATATCCACTTTATGT+GGG 0.595924 3.1:+22018640 MS.gene61879:CDS
GGAAGAAACTGTGTTTGGAA+AGG 0.598979 3.1:-22017876 None:intergenic
AACAGCTTCATCCATGGCGA+CGG 0.608016 3.1:+22017636 None:intergenic
GGTGAAGTTGGCGAATTTAG+GGG 0.608400 3.1:+22018521 MS.gene61879:CDS
AGAATTACCCAAAATTCTAG+TGG 0.610467 3.1:+22017937 MS.gene61879:CDS
GATGTGGTGGTGGTTTGATG+AGG 0.614582 3.1:-22017897 None:intergenic
AGTTAGTTACCAAATGAAGG+AGG 0.618591 3.1:-22018038 None:intergenic
TGGGTAATTCTGATCAACCA+AGG 0.622582 3.1:-22017925 None:intergenic
AGACTGGTCTCAACTGCCGA+AGG 0.625064 3.1:+22017666 MS.gene61879:CDS
GTTAGTTACCAAATGAAGGA+GGG 0.627616 3.1:-22018037 None:intergenic
TGAGGGTGAGTTATTGCTAA+CGG 0.631275 3.1:+22018398 MS.gene61879:CDS
GCTGAACCTTTGGTTGATGG+TGG 0.633853 3.1:+22018348 MS.gene61879:CDS
TAATTCTGATCAACCAAGGA+CGG 0.636208 3.1:-22017921 None:intergenic
ACGGACGGTTACTGTTAGAC+CGG 0.638236 3.1:+22018302 MS.gene61879:CDS
GGTAGACAAAACTGGACGGA+CGG 0.641749 3.1:+22018287 MS.gene61879:CDS
TCTGAGTAGTGGGTACTCCA+GGG 0.642884 3.1:-22017806 None:intergenic
ATGCGGCGATGAGAATTGGA+AGG 0.644801 3.1:+22018203 MS.gene61879:CDS
ATCTGGTAGACAAAACTGGA+CGG 0.647904 3.1:+22018283 MS.gene61879:CDS
ATCAACCAAGGACGGTGATG+TGG 0.648742 3.1:-22017913 None:intergenic
AACCAAGGACGGTGATGTGG+TGG 0.657912 3.1:-22017910 None:intergenic
TGTTATGGCCACCTCCAGAG+TGG 0.665853 3.1:+22018730 MS.gene61879:CDS
TTCAGCCACTAACTGGACAG+TGG 0.686028 3.1:-22018331 None:intergenic
CCAGGGTTAAAATGTTACAA+CGG 0.704032 3.1:-22017789 None:intergenic
AAACCAGTACTGTTGAAATG+CGG 0.710188 3.1:+22018186 MS.gene61879:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATAATATATCCACTTTATGT+GGG + chr3.1:22018640-22018659 MS.gene61879:CDS 20.0%
!! CTGAATATTCTAAATTGTTA+TGG + chr3.1:22018715-22018734 MS.gene61879:CDS 20.0%
!!! CATAACAATTTAGAATATTC+AGG - chr3.1:22018717-22018736 None:intergenic 20.0%
!!! TTTAGAATATTCAGGATATT+TGG - chr3.1:22018709-22018728 None:intergenic 20.0%
! CAAGTATTAATTTCTTGGTA+CGG + chr3.1:22018460-22018479 MS.gene61879:CDS 25.0%
! GATAATATATCCACTTTATG+TGG + chr3.1:22018639-22018658 MS.gene61879:CDS 25.0%
! TCTTGCAAGTATTAATTTCT+TGG + chr3.1:22018455-22018474 MS.gene61879:CDS 25.0%
! TGTGTTTAAGCTTAATGAAA+AGG + chr3.1:22018488-22018507 MS.gene61879:CDS 25.0%
AAAATGTTACAACGGTGATT+TGG - chr3.1:22017784-22017803 None:intergenic 30.0%
AAATGTTACAACGGTGATTT+GGG - chr3.1:22017783-22017802 None:intergenic 30.0%
AATCTGTTAAAATTGAGCAC+AGG - chr3.1:22018015-22018034 None:intergenic 30.0%
AGAATTACCCAAAATTCTAG+TGG + chr3.1:22017937-22017956 MS.gene61879:CDS 30.0%
GACAAAAAACCTATCATACT+CGG + chr3.1:22018138-22018157 MS.gene61879:CDS 30.0%
TAATGAAAAGGAGAAGAAGT+GGG + chr3.1:22018500-22018519 MS.gene61879:CDS 30.0%
TGAAGTTAGTTACCAAATGA+AGG - chr3.1:22018044-22018063 None:intergenic 30.0%
TTAATGAAAAGGAGAAGAAG+TGG + chr3.1:22018499-22018518 MS.gene61879:CDS 30.0%
! TTCGATCAATTTGTTCCAAT+TGG + chr3.1:22017743-22017762 MS.gene61879:CDS 30.0%
!! AGAATGAAGTATTGTTGTTG+AGG - chr3.1:22017852-22017871 None:intergenic 30.0%
!! GAATGAAGTATTGTTGTTGA+GGG - chr3.1:22017851-22017870 None:intergenic 30.0%
AAACCAGTACTGTTGAAATG+CGG + chr3.1:22018186-22018205 MS.gene61879:CDS 35.0%
AAATTGAGCACAGGATTGAA+AGG - chr3.1:22018006-22018025 None:intergenic 35.0%
AGGATTGAAAGGAAATGGTT+TGG - chr3.1:22017995-22018014 None:intergenic 35.0%
AGGGAATTGTGTGATCATTA+TGG + chr3.1:22018617-22018636 MS.gene61879:CDS 35.0%
AGTTAGTTACCAAATGAAGG+AGG - chr3.1:22018041-22018060 None:intergenic 35.0%
ATCAGATGAAGAAGATCCTT+CGG - chr3.1:22017685-22017704 None:intergenic 35.0%
CCAGGGTTAAAATGTTACAA+CGG - chr3.1:22017792-22017811 None:intergenic 35.0%
GAGATATGGATGTAAGAGTT+GGG - chr3.1:22017968-22017987 None:intergenic 35.0%
GGATTGAAAGGAAATGGTTT+GGG - chr3.1:22017994-22018013 None:intergenic 35.0%
GTTAGTTACCAAATGAAGGA+GGG - chr3.1:22018040-22018059 None:intergenic 35.0%
TAATTCTGATCAACCAAGGA+CGG - chr3.1:22017924-22017943 None:intergenic 35.0%
TACATTTCGGTATAGTGCAA+GGG - chr3.1:22018087-22018106 None:intergenic 35.0%
TCATCTGATATCACAACGAA+TGG + chr3.1:22017696-22017715 MS.gene61879:CDS 35.0%
TGAGGGAATCAATTTCGAAT+GGG - chr3.1:22017834-22017853 None:intergenic 35.0%
TTGAGGGAATCAATTTCGAA+TGG - chr3.1:22017835-22017854 None:intergenic 35.0%
! CAGATTTGTGTGTTGCTAAA+GGG + chr3.1:22018598-22018617 MS.gene61879:CDS 35.0%
! GGTTTTGCCACTAGAATTTT+GGG - chr3.1:22017947-22017966 None:intergenic 35.0%
! TCAGATTTGTGTGTTGCTAA+AGG + chr3.1:22018597-22018616 MS.gene61879:CDS 35.0%
!! TATGAGTCTTTAGAGTTCGA+TGG + chr3.1:22018426-22018445 MS.gene61879:CDS 35.0%
!!! AGGGGATAGAGTTTTGTTTT+TGG + chr3.1:22018539-22018558 MS.gene61879:CDS 35.0%
!!! GACTTTTTCAGGGTACATTT+CGG - chr3.1:22018100-22018119 None:intergenic 35.0%
!!! GGGGATAGAGTTTTGTTTTT+GGG + chr3.1:22018540-22018559 MS.gene61879:CDS 35.0%
!!! TGTTTTTTGGACTTGGATGA+TGG + chr3.1:22018666-22018685 MS.gene61879:CDS 35.0%
!!! TTTATGTGGGAGCTGTTTTT+TGG + chr3.1:22018653-22018672 MS.gene61879:CDS 35.0%
!!! TTTCAACAGTACTGGTTTTG+AGG - chr3.1:22018184-22018203 None:intergenic 35.0%
AAAACAGCTCCCACATAAAG+TGG - chr3.1:22018652-22018671 None:intergenic 40.0%
AAAATTCTTGGTGGAGAGTG+AGG + chr3.1:22018380-22018399 MS.gene61879:CDS 40.0%
AAATTCTTGGTGGAGAGTGA+GGG + chr3.1:22018381-22018400 MS.gene61879:CDS 40.0%
AATGTACCCTGAAAAAGTCG+TGG + chr3.1:22018101-22018120 MS.gene61879:CDS 40.0%
AGCACAGGATTGAAAGGAAA+TGG - chr3.1:22018000-22018019 None:intergenic 40.0%
ATCTGGTAGACAAAACTGGA+CGG + chr3.1:22018283-22018302 MS.gene61879:CDS 40.0%
CCTTATCTGGTAGACAAAAC+TGG + chr3.1:22018279-22018298 MS.gene61879:CDS 40.0%
CGGGAAAAGAAAATTCTTGG+TGG + chr3.1:22018371-22018390 MS.gene61879:CDS 40.0%
GATGAGGAAGAAACTGTGTT+TGG - chr3.1:22017884-22017903 None:intergenic 40.0%
GGAAGAAACTGTGTTTGGAA+AGG - chr3.1:22017879-22017898 None:intergenic 40.0%
GGAGATATGGATGTAAGAGT+TGG - chr3.1:22017969-22017988 None:intergenic 40.0%
GTACATTTCGGTATAGTGCA+AGG - chr3.1:22018088-22018107 None:intergenic 40.0%
TGAGGGTGAGTTATTGCTAA+CGG + chr3.1:22018398-22018417 MS.gene61879:CDS 40.0%
TGGCGGGAAAAGAAAATTCT+TGG + chr3.1:22018368-22018387 MS.gene61879:CDS 40.0%
TGGGTAATTCTGATCAACCA+AGG - chr3.1:22017928-22017947 None:intergenic 40.0%
! GAGACATCTGCCTTTTCAAT+GGG + chr3.1:22018253-22018272 MS.gene61879:CDS 40.0%
! GGGTTTTGCCACTAGAATTT+TGG - chr3.1:22017948-22017967 None:intergenic 40.0%
! TGAAAGGAAATGGTTTGGGT+GGG - chr3.1:22017990-22018009 None:intergenic 40.0%
! TTGAAAGGAAATGGTTTGGG+TGG - chr3.1:22017991-22018010 None:intergenic 40.0%
!! CCAGTTTTGTCTACCAGATA+AGG - chr3.1:22018282-22018301 None:intergenic 40.0%
!! CCGTTGTAACATTTTAACCC+TGG + chr3.1:22017789-22017808 MS.gene61879:CDS 40.0%
!!! ACAGTACTGGTTTTGAGGTA+CGG - chr3.1:22018179-22018198 None:intergenic 40.0%
!!! GTGCAAGGGTTCTTTTTTGT+CGG - chr3.1:22018073-22018092 None:intergenic 40.0%
!!! TGCAAGGGTTCTTTTTTGTC+GGG - chr3.1:22018072-22018091 None:intergenic 40.0%
CAGATTCTCCCTCCTTCATT+TGG + chr3.1:22018029-22018048 MS.gene61879:CDS 45.0%
CGAATGGGTATCTGAGTAGT+GGG - chr3.1:22017819-22017838 None:intergenic 45.0%
CTAAGTGTGCCGAGTATGAT+AGG - chr3.1:22018150-22018169 None:intergenic 45.0%
GATAAGGCGACCCATTGAAA+AGG - chr3.1:22018266-22018285 None:intergenic 45.0%
GGGTGAAGTTGGCGAATTTA+GGG + chr3.1:22018520-22018539 MS.gene61879:CDS 45.0%
GGTGAAGTTGGCGAATTTAG+GGG + chr3.1:22018521-22018540 MS.gene61879:CDS 45.0%
TCGAATGGGTATCTGAGTAG+TGG - chr3.1:22017820-22017839 None:intergenic 45.0%
TGAAATGCGGCGATGAGAAT+TGG + chr3.1:22018199-22018218 MS.gene61879:CDS 45.0%
TGGGTGAAGTTGGCGAATTT+AGG + chr3.1:22018519-22018538 MS.gene61879:CDS 45.0%
TTTCAATGGGTCGCCTTATC+TGG + chr3.1:22018266-22018285 MS.gene61879:CDS 45.0%
! AATGGTTTGGGTGGGAGATA+TGG - chr3.1:22017982-22018001 None:intergenic 45.0%
! ACAACGGTGATTTGGGATTG+AGG - chr3.1:22017776-22017795 None:intergenic 45.0%
! GGAGACATCTGCCTTTTCAA+TGG + chr3.1:22018252-22018271 MS.gene61879:CDS 45.0%
!!! TGACAGCCACGACTTTTTCA+GGG - chr3.1:22018110-22018129 None:intergenic 45.0%
!!! TGGGAGCTGTTTTTTGGACT+TGG + chr3.1:22018659-22018678 MS.gene61879:CDS 45.0%
ACGGACGGTTACTGTTAGAC+CGG + chr3.1:22018302-22018321 MS.gene61879:CDS 50.0%
ATCAACCAAGGACGGTGATG+TGG - chr3.1:22017916-22017935 None:intergenic 50.0%
ATGCGGCGATGAGAATTGGA+AGG + chr3.1:22018203-22018222 MS.gene61879:CDS 50.0%
CCAAAGGTTCAGCCACTAAC+TGG - chr3.1:22018341-22018360 None:intergenic 50.0%
CCAGTTAGTGGCTGAACCTT+TGG + chr3.1:22018338-22018357 MS.gene61879:CDS 50.0%
GGAGAAGAAGTGGGTGAAGT+TGG + chr3.1:22018509-22018528 MS.gene61879:CDS 50.0%
GGTAGACAAAACTGGACGGA+CGG + chr3.1:22018287-22018306 MS.gene61879:CDS 50.0%
GTGGCTGAACCTTTGGTTGA+TGG + chr3.1:22018345-22018364 MS.gene61879:CDS 50.0%
TCGCCGCATTTCAACAGTAC+TGG - chr3.1:22018192-22018211 None:intergenic 50.0%
TTCAGCCACTAACTGGACAG+TGG - chr3.1:22018334-22018353 None:intergenic 50.0%
! CTTCTTTTGGCGATCCACTC+TGG - chr3.1:22018747-22018766 None:intergenic 50.0%
!! AACCTTTGGTTGATGGTGGC+GGG + chr3.1:22018352-22018371 MS.gene61879:CDS 50.0%
!! ATCTGAGTAGTGGGTACTCC+AGG - chr3.1:22017810-22017829 None:intergenic 50.0%
!! GAACCTTTGGTTGATGGTGG+CGG + chr3.1:22018351-22018370 MS.gene61879:CDS 50.0%
!! GATGTGGTGGTGGTTTGATG+AGG - chr3.1:22017900-22017919 None:intergenic 50.0%
!! GATTGAGGAAGAGCGCCAAT+TGG - chr3.1:22017761-22017780 None:intergenic 50.0%
!! GCTGAACCTTTGGTTGATGG+TGG + chr3.1:22018348-22018367 MS.gene61879:CDS 50.0%
!! GTGACAGCCACGACTTTTTC+AGG - chr3.1:22018111-22018130 None:intergenic 50.0%
!! TCTGAGTAGTGGGTACTCCA+GGG - chr3.1:22017809-22017828 None:intergenic 50.0%
AACCAAGGACGGTGATGTGG+TGG - chr3.1:22017913-22017932 None:intergenic 55.0%
AACTGGACAGTGGAGTCGTC+CGG - chr3.1:22018324-22018343 None:intergenic 55.0%
CGACTCCACTGTCCAGTTAG+TGG + chr3.1:22018326-22018345 MS.gene61879:CDS 55.0%
TCCTGACATGTCGCCTTGCT+CGG + chr3.1:22018230-22018249 MS.gene61879:CDS 55.0%
TGTTATGGCCACCTCCAGAG+TGG + chr3.1:22018730-22018749 MS.gene61879:CDS 55.0%
TTCCCGCCACCATCAACCAA+AGG - chr3.1:22018357-22018376 None:intergenic 55.0%
! CTTTTGGCGATCCACTCTGG+AGG - chr3.1:22018744-22018763 None:intergenic 55.0%
!! AGACTGGTCTCAACTGCCGA+AGG + chr3.1:22017666-22017685 MS.gene61879:CDS 55.0%
AGGCAGATGTCTCCCGAGCA+AGG - chr3.1:22018246-22018265 None:intergenic 60.0%
CAAGGACGGTGATGTGGTGG+TGG - chr3.1:22017910-22017929 None:intergenic 60.0%
CACCACCACATCACCGTCCT+TGG + chr3.1:22017908-22017927 MS.gene61879:CDS 60.0%
CCTGACATGTCGCCTTGCTC+GGG + chr3.1:22018231-22018250 MS.gene61879:CDS 60.0%
! TTGGCGATCCACTCTGGAGG+TGG - chr3.1:22018741-22018760 None:intergenic 60.0%
CCCGAGCAAGGCGACATGTC+AGG - chr3.1:22018234-22018253 None:intergenic 65.0%
TGGCGACGGCAGAGGCAGAC+TGG + chr3.1:22017650-22017669 MS.gene61879:CDS 70.0%


Chromosome Type Strat End Strand Name
chr3.1 gene 22017649 22018770 22017649 ID=MS.gene61879
chr3.1 mRNA 22017649 22018770 22017649 ID=MS.gene61879.t1;Parent=MS.gene61879
chr3.1 exon 22017649 22018770 22017649 ID=MS.gene61879.t1.exon1;Parent=MS.gene61879.t1
chr3.1 CDS 22017649 22018770 22017649 ID=cds.MS.gene61879.t1;Parent=MS.gene61879.t1
Gene Sequence

>MS.gene61879

ATGGCGACGGCAGAGGCAGACTGGTCTCAACTGCCGAAGGATCTTCTTCATCTGATATCACAACGAATGGACAACGAAATCGATCTTATTCGTTTTCGATCAATTTGTTCCAATTGGCGCTCTTCCTCAATCCCAAATCACCGTTGTAACATTTTAACCCTGGAGTACCCACTACTCAGATACCCATTCGAAATTGATTCCCTCAACAACAATACTTCATTCTCTTACCTTTCCAAACACAGTTTCTTCCTCATCAAACCACCACCACATCACCGTCCTTGGTTGATCAGAATTACCCAAAATTCTAGTGGCAAAACCCAACTCTTACATCCATATCTCCCACCCAAACCATTTCCTTTCAATCCTGTGCTCAATTTTAACAGATTCTCCCTCCTTCATTTGGTAACTAACTTCATCATTCCCGACAAAAAAGAACCCTTGCACTATACCGAAATGTACCCTGAAAAAGTCGTGGCTGTCACGTGTCATGACAAAAAACCTATCATACTCGGCACACTTAGCTTTAGCCGTACCTCAAAACCAGTACTGTTGAAATGCGGCGATGAGAATTGGAAGGCTATTCCTGACATGTCGCCTTGCTCGGGAGACATCTGCCTTTTCAATGGGTCGCCTTATCTGGTAGACAAAACTGGACGGACGGTTACTGTTAGACCGGACGACTCCACTGTCCAGTTAGTGGCTGAACCTTTGGTTGATGGTGGCGGGAAAAGAAAATTCTTGGTGGAGAGTGAGGGTGAGTTATTGCTAACGGACTTTTATGAGTCTTTAGAGTTCGATGGTGATGATCTTGCAAGTATTAATTTCTTGGTACGGATTCATGTGTTTAAGCTTAATGAAAAGGAGAAGAAGTGGGTGAAGTTGGCGAATTTAGGGGATAGAGTTTTGTTTTTGGGATCGCTGTGTTCATTCTCTGCTTCTGCTTCTGCTTCAGATTTGTGTGTTGCTAAAGGGAATTGTGTGATCATTATGGATAATATATCCACTTTATGTGGGAGCTGTTTTTTGGACTTGGATGATGGTCAGCTTTCGCTTTTATCCAAATATCCTGAATATTCTAAATTGTTATGGCCACCTCCAGAGTGGATCGCCAAAAGAAGCTGA
Protein sequence

>MS.gene61879.t1

MATAEADWSQLPKDLLHLISQRMDNEIDLIRFRSICSNWRSSSIPNHRCNILTLEYPLLRYPFEIDSLNNNTSFSYLSKHSFFLIKPPPHHRPWLIRITQNSSGKTQLLHPYLPPKPFPFNPVLNFNRFSLLHLVTNFIIPDKKEPLHYTEMYPEKVVAVTCHDKKPIILGTLSFSRTSKPVLLKCGDENWKAIPDMSPCSGDICLFNGSPYLVDKTGRTVTVRPDDSTVQLVAEPLVDGGGKRKFLVESEGELLLTDFYESLEFDGDDLASINFLVRIHVFKLNEKEKKWVKLANLGDRVLFLGSLCSFSASASASDLCVAKGNCVIIMDNISTLCGSCFLDLDDGQLSLLSKYPEYSKLLWPPPEWIAKRS