Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62056.t1 | XP_024638386.1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 4.80E-212 | 746.9 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62056.t1 | Q94B38 | 77.7 | 399 | 71 | 5 | 1 | 392 | 1 | 388 | 9.0e-167 | 587.8 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62056.t1 | A0A396IJA1 | 97.7 | 392 | 9 | 0 | 1 | 392 | 1 | 392 | 3.5e-212 | 746.9 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|
PPI:
| Gene1 | Gene2 | Type |
|---|---|---|
| MS.gene62056 | MS.gene02045 | PPI |
| MS.gene62056 | MS.gene003243 | PPI |
| MS.gene62056 | MS.gene74587 | PPI |
| MS.gene62056 | MS.gene03172 | PPI |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62056.t1 | MTR_4g131800 | 90.097 | 414 | 18 | 1 | 1 | 391 | 1 | 414 | 0.0 | 701 |
| MS.gene62056.t1 | MTR_2g022700 | 87.332 | 371 | 47 | 0 | 22 | 392 | 25 | 395 | 0.0 | 639 |
| MS.gene62056.t1 | MTR_3g049400 | 78.261 | 368 | 66 | 5 | 36 | 392 | 37 | 401 | 0.0 | 556 |
| MS.gene62056.t1 | MTR_2g029180 | 51.613 | 341 | 150 | 8 | 62 | 389 | 54 | 392 | 1.02e-98 | 300 |
| MS.gene62056.t1 | MTR_4g088350 | 44.781 | 297 | 155 | 4 | 99 | 391 | 97 | 388 | 5.07e-81 | 254 |
| MS.gene62056.t1 | MTR_5g044220 | 41.159 | 328 | 174 | 5 | 75 | 391 | 74 | 393 | 5.88e-78 | 246 |
| MS.gene62056.t1 | MTR_6g005480 | 46.774 | 310 | 154 | 5 | 92 | 392 | 101 | 408 | 1.10e-75 | 241 |
| MS.gene62056.t1 | MTR_4g105630 | 41.946 | 298 | 170 | 2 | 97 | 392 | 81 | 377 | 6.06e-72 | 230 |
| MS.gene62056.t1 | MTR_4g105630 | 40.893 | 291 | 169 | 2 | 97 | 385 | 81 | 370 | 4.87e-67 | 217 |
| MS.gene62056.t1 | MTR_3g077640 | 41.049 | 324 | 181 | 4 | 78 | 392 | 80 | 402 | 5.89e-67 | 218 |
| MS.gene62056.t1 | MTR_4g088350 | 42.910 | 268 | 144 | 4 | 128 | 391 | 15 | 277 | 6.20e-66 | 211 |
| MS.gene62056.t1 | MTR_4g105630 | 38.174 | 241 | 146 | 2 | 97 | 335 | 81 | 320 | 3.66e-46 | 162 |
| MS.gene62056.t1 | MTR_4g105630 | 40.000 | 215 | 127 | 1 | 97 | 309 | 81 | 295 | 7.60e-44 | 155 |
| MS.gene62056.t1 | MTR_1g030320 | 26.557 | 305 | 185 | 7 | 108 | 392 | 21 | 306 | 6.73e-24 | 101 |
| MS.gene62056.t1 | MTR_3g072380 | 26.230 | 305 | 186 | 7 | 108 | 392 | 22 | 307 | 3.83e-23 | 99.4 |
| MS.gene62056.t1 | MTR_3g072380 | 30.357 | 168 | 107 | 3 | 108 | 268 | 22 | 186 | 6.23e-17 | 80.1 |
| MS.gene62056.t1 | MTR_3g070000 | 22.531 | 324 | 228 | 11 | 84 | 392 | 4 | 319 | 1.43e-16 | 80.5 |
| MS.gene62056.t1 | MTR_5g081710 | 22.727 | 308 | 224 | 9 | 93 | 392 | 2 | 303 | 4.93e-15 | 75.5 |
| MS.gene62056.t1 | MTR_3g462070 | 21.918 | 292 | 217 | 6 | 108 | 392 | 17 | 304 | 1.82e-14 | 73.9 |
| MS.gene62056.t1 | MTR_4g018760 | 22.526 | 293 | 216 | 6 | 107 | 392 | 19 | 307 | 2.50e-13 | 70.5 |
| MS.gene62056.t1 | MTR_4g101860 | 21.839 | 348 | 241 | 8 | 67 | 392 | 9 | 347 | 3.81e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62056.t1 | AT1G61800 | 82.500 | 360 | 50 | 2 | 38 | 392 | 37 | 388 | 0.0 | 591 |
| MS.gene62056.t1 | AT1G61800 | 81.667 | 360 | 53 | 2 | 38 | 392 | 37 | 388 | 0.0 | 585 |
| MS.gene62056.t1 | AT5G54800 | 79.539 | 347 | 60 | 2 | 49 | 391 | 48 | 387 | 0.0 | 544 |
| MS.gene62056.t1 | AT5G17630 | 50.136 | 367 | 167 | 9 | 34 | 390 | 42 | 402 | 2.06e-112 | 335 |
| MS.gene62056.t1 | AT4G03950 | 56.997 | 293 | 69 | 6 | 101 | 392 | 18 | 254 | 2.64e-92 | 279 |
| MS.gene62056.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 9.02e-81 | 254 |
| MS.gene62056.t1 | AT5G46110 | 38.211 | 369 | 204 | 6 | 33 | 391 | 43 | 397 | 9.49e-81 | 254 |
| MS.gene62056.t1 | AT5G46110 | 44.444 | 288 | 151 | 4 | 108 | 391 | 2 | 284 | 1.05e-79 | 247 |
| MS.gene62056.t1 | AT5G46110 | 37.127 | 369 | 197 | 7 | 33 | 391 | 43 | 386 | 1.20e-75 | 240 |
| MS.gene62056.t1 | AT3G01550 | 42.345 | 307 | 174 | 2 | 89 | 392 | 67 | 373 | 1.52e-68 | 221 |
| MS.gene62056.t1 | AT3G01550 | 41.368 | 307 | 172 | 3 | 89 | 392 | 67 | 368 | 1.99e-64 | 210 |
| MS.gene62056.t1 | AT5G33320 | 38.650 | 326 | 191 | 3 | 74 | 391 | 75 | 399 | 5.83e-63 | 207 |
| MS.gene62056.t1 | AT1G77610 | 25.503 | 298 | 197 | 5 | 108 | 392 | 16 | 301 | 2.46e-23 | 100 |
| MS.gene62056.t1 | AT1G21870 | 25.503 | 298 | 197 | 6 | 108 | 392 | 22 | 307 | 9.72e-23 | 98.6 |
| MS.gene62056.t1 | AT5G05820 | 24.000 | 300 | 214 | 9 | 101 | 392 | 12 | 305 | 6.00e-18 | 84.3 |
| MS.gene62056.t1 | AT3G11320 | 23.333 | 300 | 216 | 9 | 101 | 392 | 12 | 305 | 3.32e-16 | 79.0 |
| MS.gene62056.t1 | AT1G12500 | 23.729 | 295 | 212 | 7 | 106 | 392 | 64 | 353 | 4.69e-14 | 73.2 |
Find 98 sgRNAs with CRISPR-Local
Find 170 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTATATGTTTCAGGGTTTA+TGG | 0.101964 | 8.2:-3344966 | MS.gene62056:intron |
| CTTTCATTGCTGCCAATTAT+TGG | 0.180449 | 8.2:-3345300 | MS.gene62056:CDS |
| TTAAGCTTACCATACAAAAT+TGG | 0.184444 | 8.2:+3344742 | None:intergenic |
| GAGAAGCAGTAGAGATAATA+TGG | 0.194779 | 8.2:+3344841 | None:intergenic |
| CAGCCAGCAGCCCACATCTT+TGG | 0.196761 | 8.2:+3344791 | None:intergenic |
| TTCCCTATGCTAAATGTTAA+TGG | 0.247165 | 8.2:+3344088 | None:intergenic |
| TGAGGCCCCTAAAGTTAATT+TGG | 0.255186 | 8.2:-3345777 | MS.gene62056:CDS |
| CCAATGTGGCCTTTGTGTTT+AGG | 0.259810 | 8.2:-3344931 | MS.gene62056:CDS |
| AGCCAGCAGCCCACATCTTT+GGG | 0.269548 | 8.2:+3344792 | None:intergenic |
| AGTTTCCCTCCTTGTGAGTT+TGG | 0.275392 | 8.2:+3346045 | None:intergenic |
| GCAGCTCAGAAACTCAAAAT+TGG | 0.310246 | 8.2:-3345953 | MS.gene62056:CDS |
| AGGGCATTGTTTGGCTGAAT+TGG | 0.315373 | 8.2:+3344013 | None:intergenic |
| CTTTCCAACAGGGTGAATAA+TGG | 0.322181 | 8.2:+3346144 | None:intergenic |
| GTATATGTTTCAGGGTTTAT+GGG | 0.323201 | 8.2:-3344965 | MS.gene62056:intron |
| CTAAAATACACATTACTGTT+TGG | 0.328456 | 8.2:+3343771 | None:intergenic |
| AGTGCACAACCTCCAATAAT+TGG | 0.333090 | 8.2:+3345288 | None:intergenic |
| TGTTAATCTCATGGGCTACT+AGG | 0.338741 | 8.2:-3345805 | MS.gene62056:CDS |
| TTATTTGTGTTCTTTCCAAC+AGG | 0.349705 | 8.2:+3346133 | None:intergenic |
| GAACTTAATTTCAATATGAT+TGG | 0.357019 | 8.2:-3345252 | MS.gene62056:intron |
| TGTAAATGAAACTGCAACTT+TGG | 0.364668 | 8.2:+3345407 | None:intergenic |
| TTTCCAACAGGGTGAATAAT+GGG | 0.368520 | 8.2:+3346145 | None:intergenic |
| CTGTGACCTATCTGCTTCAT+AGG | 0.377418 | 8.2:+3346012 | None:intergenic |
| TCCACTTTGTCCCTTGCTGC+TGG | 0.380408 | 8.2:-3345839 | MS.gene62056:CDS |
| TAAGCTTACCATACAAAATT+GGG | 0.391221 | 8.2:+3344743 | None:intergenic |
| GTTGCAGTGGCACATACAAT+TGG | 0.392389 | 8.2:-3345456 | MS.gene62056:CDS |
| TTCTGAGCTGCTTGTTCACC+TGG | 0.392509 | 8.2:+3345965 | None:intergenic |
| GGTGCTGCCATTGCAATCCT+TGG | 0.398279 | 8.2:-3343989 | MS.gene62056:CDS |
| CTCTCATCATGTTAATCTCA+TGG | 0.398591 | 8.2:-3345814 | MS.gene62056:CDS |
| TCATTACCCTTTACCAACTT+TGG | 0.400604 | 8.2:-3346208 | MS.gene62056:CDS |
| GGCCCAAAGATGTGGGCTGC+TGG | 0.405747 | 8.2:-3344794 | MS.gene62056:CDS |
| TAGGAATATATTCTCAAAGA+AGG | 0.412057 | 8.2:-3344912 | MS.gene62056:CDS |
| CAAAGATGTGGGCTGCTGGC+TGG | 0.414219 | 8.2:-3344790 | MS.gene62056:CDS |
| ATGGGTAATGTGCATAGTTT+AGG | 0.414988 | 8.2:+3346163 | None:intergenic |
| GATGAACCAAAGTTGGTAAA+GGG | 0.421343 | 8.2:+3346202 | None:intergenic |
| GCAGCACCAAGGGCATTGTT+TGG | 0.422130 | 8.2:+3344004 | None:intergenic |
| TACAAAATTGGGACCAATCT+GGG | 0.424232 | 8.2:+3344754 | None:intergenic |
| ATACAAAATTGGGACCAATC+TGG | 0.428493 | 8.2:+3344753 | None:intergenic |
| CTCCATTAACATTTAGCATA+GGG | 0.437899 | 8.2:-3344090 | MS.gene62056:CDS |
| CCTTCCACAGCAATAGCAAA+AGG | 0.450440 | 8.2:+3344815 | None:intergenic |
| AATGTGCATAGTTTAGGCCT+TGG | 0.452348 | 8.2:+3346169 | None:intergenic |
| ATGAAAGGTAAACTTGTAAA+GGG | 0.453481 | 8.2:+3345316 | None:intergenic |
| AATGAAAGGTAAACTTGTAA+AGG | 0.460416 | 8.2:+3345315 | None:intergenic |
| TGATGAACCAAAGTTGGTAA+AGG | 0.462222 | 8.2:+3346201 | None:intergenic |
| TCATTGCTGCCAATTATTGG+AGG | 0.465645 | 8.2:-3345297 | MS.gene62056:CDS |
| TATATGTTTCAGGGTTTATG+GGG | 0.470350 | 8.2:-3344964 | MS.gene62056:intron |
| TTACCCATTATTCACCCTGT+TGG | 0.474011 | 8.2:-3346148 | MS.gene62056:CDS |
| TTTACACACATAATCAAAAG+TGG | 0.474109 | 8.2:-3345390 | MS.gene62056:CDS |
| AGCAGATAGGTCACAGCCAT+TGG | 0.485312 | 8.2:-3346005 | MS.gene62056:CDS |
| TTTCAATATTTACAACAAGA+AGG | 0.489567 | 8.2:-3345894 | MS.gene62056:CDS |
| GTTAATCTCATGGGCTACTA+GGG | 0.492852 | 8.2:-3345804 | MS.gene62056:CDS |
| AGAGTTTGATGAACCAAAGT+TGG | 0.496961 | 8.2:+3346195 | None:intergenic |
| GTGGAAGTAAGCCAAGGATA+AGG | 0.497515 | 8.2:+3345857 | None:intergenic |
| TGGCACCTTCCTCTATTCAC+AGG | 0.498982 | 8.2:-3343969 | MS.gene62056:intron |
| ATGAAAGGAATGTCTGTTAG+TGG | 0.500986 | 8.2:-3344887 | MS.gene62056:CDS |
| TTGCAGTGGCACATACAATT+GGG | 0.501192 | 8.2:-3345455 | MS.gene62056:CDS |
| TCTCCATTAACATTTAGCAT+AGG | 0.504196 | 8.2:-3344091 | MS.gene62056:CDS |
| GGGAATGGACCTGTGAATAG+AGG | 0.507084 | 8.2:+3343960 | None:intergenic |
| CTTCCACAGCAATAGCAAAA+GGG | 0.507964 | 8.2:+3344816 | None:intergenic |
| TCAGTGGATGATATGTAAAG+AGG | 0.515667 | 8.2:+3346088 | None:intergenic |
| GAGCTGCTTGTTCACCTGGT+AGG | 0.516916 | 8.2:+3345969 | None:intergenic |
| GTTCATCAAACTCTATTCCA+AGG | 0.531276 | 8.2:-3346186 | MS.gene62056:CDS |
| CAAACAGCAGTGTCCCAGAT+TGG | 0.535343 | 8.2:-3344767 | MS.gene62056:CDS |
| TTCTCAAAGAAGGGAATGAA+AGG | 0.535780 | 8.2:-3344902 | MS.gene62056:CDS |
| ACCAGCAGCAAGGGACAAAG+TGG | 0.537499 | 8.2:+3345838 | None:intergenic |
| AGGAATATATTCTCAAAGAA+GGG | 0.541673 | 8.2:-3344911 | MS.gene62056:CDS |
| CCTAAACACAAAGGCCACAT+TGG | 0.548843 | 8.2:+3344931 | None:intergenic |
| CAATAATTGGCAGCAATGAA+AGG | 0.550796 | 8.2:+3345301 | None:intergenic |
| ATTCAGCCAAACAATGCCCT+TGG | 0.558227 | 8.2:-3344010 | MS.gene62056:CDS |
| TCTCATCATGTTAATCTCAT+GGG | 0.562801 | 8.2:-3345813 | MS.gene62056:CDS |
| GTTTGAGAGAAGACAAAGAG+AGG | 0.565693 | 8.2:+3346110 | None:intergenic |
| AAAATCCAAATTAACTTTAG+GGG | 0.568648 | 8.2:+3345772 | None:intergenic |
| GATGAGAGAACCAGCAGCAA+GGG | 0.572112 | 8.2:+3345829 | None:intergenic |
| ATTTAAACTGCAGGTTGCAG+TGG | 0.576270 | 8.2:-3345469 | MS.gene62056:intron |
| ATGGGCTACTAGGGTTGCTG+AGG | 0.583408 | 8.2:-3345795 | MS.gene62056:CDS |
| AGGTCAATATTAATCTCCAA+TGG | 0.584548 | 8.2:+3345989 | None:intergenic |
| AACATGGTGGGCTTTGAATG+TGG | 0.587072 | 8.2:-3345918 | MS.gene62056:CDS |
| GATTGCAATGGCAGCACCAA+GGG | 0.590233 | 8.2:+3343994 | None:intergenic |
| GATACAAGAACACTGAAAGC+AGG | 0.598642 | 8.2:+3345363 | None:intergenic |
| TTGCATGCTTACAGGAAACA+AGG | 0.604931 | 8.2:+3345742 | None:intergenic |
| CTGTGGAAGGCCCAAAGATG+TGG | 0.607847 | 8.2:-3344802 | MS.gene62056:CDS |
| GTGAATAGAGGAAGGTGCCA+AGG | 0.609003 | 8.2:+3343972 | None:intergenic |
| TTCCACAGCAATAGCAAAAG+GGG | 0.609710 | 8.2:+3344817 | None:intergenic |
| GTCATGCCTATGAAGCAGAT+AGG | 0.618296 | 8.2:-3346018 | MS.gene62056:CDS |
| AACAACCAAACTCACAAGGA+GGG | 0.622699 | 8.2:-3346050 | MS.gene62056:CDS |
| ATATGTTTCAGGGTTTATGG+GGG | 0.623221 | 8.2:-3344963 | MS.gene62056:intron |
| TGATGAGAGAACCAGCAGCA+AGG | 0.629327 | 8.2:+3345828 | None:intergenic |
| GACAAAGTGGAAGTAAGCCA+AGG | 0.631812 | 8.2:+3345851 | None:intergenic |
| GAAGGTGCCAAGGATTGCAA+TGG | 0.634289 | 8.2:+3343982 | None:intergenic |
| GAACACGATGAAGAGAATCT+CGG | 0.638378 | 8.2:-3344068 | MS.gene62056:CDS |
| ATGGACCTGTGAATAGAGGA+AGG | 0.642169 | 8.2:+3343964 | None:intergenic |
| GAGATTAATATTGACCTACC+AGG | 0.648457 | 8.2:-3345983 | MS.gene62056:CDS |
| GGATTGCAATGGCAGCACCA+AGG | 0.661338 | 8.2:+3343993 | None:intergenic |
| TATTTGTGTTCTTTCCAACA+GGG | 0.663249 | 8.2:+3346134 | None:intergenic |
| GCAGTAGAGATAATATGGAG+AGG | 0.668394 | 8.2:+3344846 | None:intergenic |
| TGTGGAAGGCCCAAAGATGT+GGG | 0.679025 | 8.2:-3344801 | MS.gene62056:CDS |
| GAATATATTCCTAAACACAA+AGG | 0.680902 | 8.2:+3344922 | None:intergenic |
| CAACAACCAAACTCACAAGG+AGG | 0.683879 | 8.2:-3346051 | MS.gene62056:CDS |
| TCTCAACAACCAAACTCACA+AGG | 0.695316 | 8.2:-3346054 | MS.gene62056:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAATCCAAATTAACTTTA+GGG | + | chr8.2:3344250-3344269 | None:intergenic | 15.0% |
| !! | AAGCAATAAAATTAAGAAAA+AGG | + | chr8.2:3344315-3344334 | None:intergenic | 15.0% |
| !! | ACATGTATATATAAAATGAA+CGG | + | chr8.2:3346138-3346157 | None:intergenic | 15.0% |
| !!! | AAAATTGATTTTGAATGAAT+TGG | - | chr8.2:3344424-3344443 | MS.gene62056:intron | 15.0% |
| !!! | TACATAAAAACTTTTATGAT+TGG | + | chr8.2:3345407-3345426 | None:intergenic | 15.0% |
| !!! | TTTCTTTTTATTTATTTCAC+AGG | - | chr8.2:3346224-3346243 | MS.gene62056:CDS | 15.0% |
| !! | AAAAGACCTTAGAAATATAA+TGG | + | chr8.2:3345344-3345363 | None:intergenic | 20.0% |
| !! | AAAATCCAAATTAACTTTAG+GGG | + | chr8.2:3344249-3344268 | None:intergenic | 20.0% |
| !! | AATAAGAAAGCAAAAATAGA+AGG | + | chr8.2:3346087-3346106 | None:intergenic | 20.0% |
| !! | ACTATATTCACTTATTTACA+TGG | - | chr8.2:3344793-3344812 | MS.gene62056:CDS | 20.0% |
| !! | CAAAAATCCAAATTAACTTT+AGG | + | chr8.2:3344251-3344270 | None:intergenic | 20.0% |
| !! | GAACTTAATTTCAATATGAT+TGG | - | chr8.2:3344766-3344785 | MS.gene62056:CDS | 20.0% |
| !! | TTTCAATATTTACAACAAGA+AGG | - | chr8.2:3344124-3344143 | MS.gene62056:CDS | 20.0% |
| !!! | AATATTGATTTAGTACTGAA+TGG | - | chr8.2:3344523-3344542 | MS.gene62056:intron | 20.0% |
| !!! | ATATTGATTTAGTACTGAAT+GGG | - | chr8.2:3344524-3344543 | MS.gene62056:intron | 20.0% |
| !!! | CTAAAGTTAATTTGGATTTT+TGG | - | chr8.2:3344249-3344268 | MS.gene62056:intron | 20.0% |
| !!! | TCATATCCATTATATTTCTA+AGG | - | chr8.2:3345335-3345354 | MS.gene62056:CDS | 20.0% |
| ! | AAAGCAAAAATAGAAGGAAA+GGG | + | chr8.2:3346081-3346100 | None:intergenic | 25.0% |
| ! | AATGAAAGGTAAACTTGTAA+AGG | + | chr8.2:3344706-3344725 | None:intergenic | 25.0% |
| ! | AGGAATATATTCTCAAAGAA+GGG | - | chr8.2:3345107-3345126 | MS.gene62056:intron | 25.0% |
| ! | ATATGTCTTGTATATGTTTC+AGG | - | chr8.2:3345044-3345063 | MS.gene62056:intron | 25.0% |
| ! | ATGAAAGGTAAACTTGTAAA+GGG | + | chr8.2:3344705-3344724 | None:intergenic | 25.0% |
| ! | ATGAAATAGTACACAACAAT+GGG | + | chr8.2:3345319-3345338 | None:intergenic | 25.0% |
| ! | ATGTTCTGTTTATAGTAGAT+TGG | - | chr8.2:3344836-3344855 | MS.gene62056:CDS | 25.0% |
| ! | ATTATCAATATTCATGGTCA+AGG | + | chr8.2:3345737-3345756 | None:intergenic | 25.0% |
| ! | CATTTGACTAATGAACTTAT+GGG | - | chr8.2:3345819-3345838 | MS.gene62056:CDS | 25.0% |
| ! | GAATATATTCCTAAACACAA+AGG | + | chr8.2:3345099-3345118 | None:intergenic | 25.0% |
| ! | TAAGCTTACCATACAAAATT+GGG | + | chr8.2:3345278-3345297 | None:intergenic | 25.0% |
| ! | TAGGAATATATTCTCAAAGA+AGG | - | chr8.2:3345106-3345125 | MS.gene62056:intron | 25.0% |
| ! | TATGAAATAGTACACAACAA+TGG | + | chr8.2:3345320-3345339 | None:intergenic | 25.0% |
| ! | TATGTCTTGTATATGTTTCA+GGG | - | chr8.2:3345045-3345064 | MS.gene62056:intron | 25.0% |
| ! | TATTCACTTATTTACATGGT+TGG | - | chr8.2:3344797-3344816 | MS.gene62056:CDS | 25.0% |
| ! | TCATTTGACTAATGAACTTA+TGG | - | chr8.2:3345818-3345837 | MS.gene62056:CDS | 25.0% |
| ! | TGTTCTGTTTATAGTAGATT+GGG | - | chr8.2:3344837-3344856 | MS.gene62056:CDS | 25.0% |
| ! | TTAAGCTTACCATACAAAAT+TGG | + | chr8.2:3345279-3345298 | None:intergenic | 25.0% |
| ! | TTTACACACATAATCAAAAG+TGG | - | chr8.2:3344628-3344647 | MS.gene62056:intron | 25.0% |
| !! | TAATTTTATTGTTGACACAC+AGG | + | chr8.2:3346168-3346187 | None:intergenic | 25.0% |
| !!! | AATTCTGAAGTCAAAATTAC+AGG | - | chr8.2:3344466-3344485 | MS.gene62056:intron | 25.0% |
| !!! | AGAAGCATTATCAATATTCA+TGG | + | chr8.2:3345743-3345762 | None:intergenic | 25.0% |
| !!! | AGTTAATTTGGATTTTTGGA+AGG | - | chr8.2:3344253-3344272 | MS.gene62056:intron | 25.0% |
| !!! | ATATTTCTAAGGTCTTTTTG+TGG | - | chr8.2:3345346-3345365 | MS.gene62056:CDS | 25.0% |
| !!! | ATTGATAATGCTTCTTCAAA+AGG | - | chr8.2:3345748-3345767 | MS.gene62056:intron | 25.0% |
| !!! | TATTGATTTAGTACTGAATG+GGG | - | chr8.2:3344525-3344544 | MS.gene62056:intron | 25.0% |
| !!! | TTATGGGTAGTAATTTTTTC+AGG | - | chr8.2:3345835-3345854 | MS.gene62056:CDS | 25.0% |
| !!! | TTATTTACATGGTTGGTTTT+CGG | - | chr8.2:3344804-3344823 | MS.gene62056:CDS | 25.0% |
| !!! | TTGATAATGCTTCTTCAAAA+GGG | - | chr8.2:3345749-3345768 | MS.gene62056:intron | 25.0% |
| AAAAATAGAAGGAAAGGGAA+TGG | + | chr8.2:3346076-3346095 | None:intergenic | 30.0% | |
| AGGTCAATATTAATCTCCAA+TGG | + | chr8.2:3344032-3344051 | None:intergenic | 30.0% | |
| ATATATGTCAGTGTCTATGT+CGG | + | chr8.2:3344924-3344943 | None:intergenic | 30.0% | |
| CGGACATAAAAAATAGTGAA+TGG | + | chr8.2:3346118-3346137 | None:intergenic | 30.0% | |
| CTCCATTAACATTTAGCATA+GGG | - | chr8.2:3345928-3345947 | MS.gene62056:CDS | 30.0% | |
| GAAAGCAAAAATAGAAGGAA+AGG | + | chr8.2:3346082-3346101 | None:intergenic | 30.0% | |
| GTATATGTTTCAGGGTTTAT+GGG | - | chr8.2:3345053-3345072 | MS.gene62056:intron | 30.0% | |
| TATATGTTTCAGGGTTTATG+GGG | - | chr8.2:3345054-3345073 | MS.gene62056:intron | 30.0% | |
| TATTTGTGTTCTTTCCAACA+GGG | + | chr8.2:3343887-3343906 | None:intergenic | 30.0% | |
| TCTCATCATGTTAATCTCAT+GGG | - | chr8.2:3344205-3344224 | MS.gene62056:intron | 30.0% | |
| TCTCCATTAACATTTAGCAT+AGG | - | chr8.2:3345927-3345946 | MS.gene62056:CDS | 30.0% | |
| TGTAAATGAAACTGCAACTT+TGG | + | chr8.2:3344614-3344633 | None:intergenic | 30.0% | |
| TGTATATGTTTCAGGGTTTA+TGG | - | chr8.2:3345052-3345071 | MS.gene62056:intron | 30.0% | |
| TTATTTGTGTTCTTTCCAAC+AGG | + | chr8.2:3343888-3343907 | None:intergenic | 30.0% | |
| TTCCCTATGCTAAATGTTAA+TGG | + | chr8.2:3345933-3345952 | None:intergenic | 30.0% | |
| TTTCTATAAGCTCTCTCATA+GGG | - | chr8.2:3345557-3345576 | MS.gene62056:intron | 30.0% | |
| ! | CTTGTATCAAGATTTTTGCT+TGG | - | chr8.2:3344670-3344689 | MS.gene62056:intron | 30.0% |
| ! | TTTGTATTTTGCAACATGGT+GGG | - | chr8.2:3344088-3344107 | MS.gene62056:CDS | 30.0% |
| !! | TAGTAGATTGGGTTGATAAT+AGG | - | chr8.2:3344848-3344867 | MS.gene62056:CDS | 30.0% |
| !!! | TTGGTTTGTATTTTGCAACA+TGG | - | chr8.2:3344084-3344103 | MS.gene62056:CDS | 30.0% |
| AAAAGAGTTTGCATGCTTAC+AGG | + | chr8.2:3344287-3344306 | None:intergenic | 35.0% | |
| AAGCTATCCTAAAGAGCTTA+TGG | - | chr8.2:3345495-3345514 | MS.gene62056:intron | 35.0% | |
| ACACTAACACTTCCAATTGA+AGG | - | chr8.2:3344886-3344905 | MS.gene62056:CDS | 35.0% | |
| ACTGTAAAACAGTTCGACTA+AGG | + | chr8.2:3345614-3345633 | None:intergenic | 35.0% | |
| AGAGTTTGATGAACCAAAGT+TGG | + | chr8.2:3343826-3343845 | None:intergenic | 35.0% | |
| AGATTCTTGCTTTCGAAGTA+CGG | - | chr8.2:3344500-3344519 | MS.gene62056:intron | 35.0% | |
| ATACAAAATTGGGACCAATC+TGG | + | chr8.2:3345268-3345287 | None:intergenic | 35.0% | |
| ATACCTAACACACCTTCAAT+TGG | + | chr8.2:3344901-3344920 | None:intergenic | 35.0% | |
| ATATGTTTCAGGGTTTATGG+GGG | - | chr8.2:3345055-3345074 | MS.gene62056:intron | 35.0% | |
| ATGAAAGGAATGTCTGTTAG+TGG | - | chr8.2:3345131-3345150 | MS.gene62056:intron | 35.0% | |
| ATGGGTAATGTGCATAGTTT+AGG | + | chr8.2:3343858-3343877 | None:intergenic | 35.0% | |
| CAATAATTGGCAGCAATGAA+AGG | + | chr8.2:3344720-3344739 | None:intergenic | 35.0% | |
| CTCATATCCATAAGCTCTTT+AGG | + | chr8.2:3345505-3345524 | None:intergenic | 35.0% | |
| CTCTCATCATGTTAATCTCA+TGG | - | chr8.2:3344204-3344223 | MS.gene62056:intron | 35.0% | |
| CTGTAAAACAGTTCGACTAA+GGG | + | chr8.2:3345613-3345632 | None:intergenic | 35.0% | |
| CTTTCATTGCTGCCAATTAT+TGG | - | chr8.2:3344718-3344737 | MS.gene62056:intron | 35.0% | |
| GAGAAGCAGTAGAGATAATA+TGG | + | chr8.2:3345180-3345199 | None:intergenic | 35.0% | |
| GAGATTAATATTGACCTACC+AGG | - | chr8.2:3344035-3344054 | MS.gene62056:CDS | 35.0% | |
| GTTCATCAAACTCTATTCCA+AGG | - | chr8.2:3343832-3343851 | MS.gene62056:intron | 35.0% | |
| GTTTCTATAAGCTCTCTCAT+AGG | - | chr8.2:3345556-3345575 | MS.gene62056:intron | 35.0% | |
| TACAAAATTGGGACCAATCT+GGG | + | chr8.2:3345267-3345286 | None:intergenic | 35.0% | |
| TCAGTGGATGATATGTAAAG+AGG | + | chr8.2:3343933-3343952 | None:intergenic | 35.0% | |
| TCATTACCCTTTACCAACTT+TGG | - | chr8.2:3343810-3343829 | MS.gene62056:intron | 35.0% | |
| TTCTCAAAGAAGGGAATGAA+AGG | - | chr8.2:3345116-3345135 | MS.gene62056:intron | 35.0% | |
| TTTCCAACAGGGTGAATAAT+GGG | + | chr8.2:3343876-3343895 | None:intergenic | 35.0% | |
| ! | GTTTGTATTTTGCAACATGG+TGG | - | chr8.2:3344087-3344106 | MS.gene62056:CDS | 35.0% |
| ! | TGAATGCTTTTCCTTATCCT+TGG | - | chr8.2:3344150-3344169 | MS.gene62056:CDS | 35.0% |
| ! | TGAGAAACTGAAGTTTTCAG+TGG | + | chr8.2:3343949-3343968 | None:intergenic | 35.0% |
| ! | TGTAAGCATGCAAACTCTTT+TGG | - | chr8.2:3344286-3344305 | MS.gene62056:intron | 35.0% |
| !! | AGATTGGTCCCAATTTTGTA+TGG | - | chr8.2:3345267-3345286 | MS.gene62056:CDS | 35.0% |
| !! | GATGAACCAAAGTTGGTAAA+GGG | + | chr8.2:3343819-3343838 | None:intergenic | 35.0% |
| !! | TGATGAACCAAAGTTGGTAA+AGG | + | chr8.2:3343820-3343839 | None:intergenic | 35.0% |
| !!! | GGGTAGTAATTTTTTCAGGT+GGG | - | chr8.2:3345839-3345858 | MS.gene62056:CDS | 35.0% |
| !!! | TGGGTAGTAATTTTTTCAGG+TGG | - | chr8.2:3345838-3345857 | MS.gene62056:CDS | 35.0% |
| AACAACCAAACTCACAAGGA+GGG | - | chr8.2:3343968-3343987 | MS.gene62056:intron | 40.0% | |
| AATGTGCATAGTTTAGGCCT+TGG | + | chr8.2:3343852-3343871 | None:intergenic | 40.0% | |
| AGTGCACAACCTCCAATAAT+TGG | + | chr8.2:3344733-3344752 | None:intergenic | 40.0% | |
| ATACTAGTGTGTGGAGATCA+TGG | - | chr8.2:3345677-3345696 | MS.gene62056:intron | 40.0% | |
| ATGATCTCCACACACTAGTA+TGG | + | chr8.2:3345678-3345697 | None:intergenic | 40.0% | |
| ATTTAAACTGCAGGTTGCAG+TGG | - | chr8.2:3344549-3344568 | MS.gene62056:intron | 40.0% | |
| CTTCCACAGCAATAGCAAAA+GGG | + | chr8.2:3345205-3345224 | None:intergenic | 40.0% | |
| CTTTCCAACAGGGTGAATAA+TGG | + | chr8.2:3343877-3343896 | None:intergenic | 40.0% | |
| GAACACGATGAAGAGAATCT+CGG | - | chr8.2:3345950-3345969 | MS.gene62056:CDS | 40.0% | |
| GAATGGGGAATTTAAACTGC+AGG | - | chr8.2:3344540-3344559 | MS.gene62056:intron | 40.0% | |
| GATACAAGAACACTGAAAGC+AGG | + | chr8.2:3344658-3344677 | None:intergenic | 40.0% | |
| GCAGCTCAGAAACTCAAAAT+TGG | - | chr8.2:3344065-3344084 | MS.gene62056:CDS | 40.0% | |
| GCAGTAGAGATAATATGGAG+AGG | + | chr8.2:3345175-3345194 | None:intergenic | 40.0% | |
| GTTTGAGAGAAGACAAAGAG+AGG | + | chr8.2:3343911-3343930 | None:intergenic | 40.0% | |
| TCATTGCTGCCAATTATTGG+AGG | - | chr8.2:3344721-3344740 | MS.gene62056:intron | 40.0% | |
| TCTCAACAACCAAACTCACA+AGG | - | chr8.2:3343964-3343983 | MS.gene62056:intron | 40.0% | |
| TGAGGCCCCTAAAGTTAATT+TGG | - | chr8.2:3344241-3344260 | MS.gene62056:intron | 40.0% | |
| TGCTTCTTCAAAAGGGTCTA+TGG | - | chr8.2:3345756-3345775 | MS.gene62056:CDS | 40.0% | |
| TTACCCATTATTCACCCTGT+TGG | - | chr8.2:3343870-3343889 | MS.gene62056:intron | 40.0% | |
| TTCCACAGCAATAGCAAAAG+GGG | + | chr8.2:3345204-3345223 | None:intergenic | 40.0% | |
| TTGCAGTGGCACATACAATT+GGG | - | chr8.2:3344563-3344582 | MS.gene62056:intron | 40.0% | |
| TTGCATGCTTACAGGAAACA+AGG | + | chr8.2:3344279-3344298 | None:intergenic | 40.0% | |
| ! | CTTCCAATTGAAGGTGTGTT+AGG | - | chr8.2:3344895-3344914 | MS.gene62056:CDS | 40.0% |
| ! | GTTAATCTCATGGGCTACTA+GGG | - | chr8.2:3344214-3344233 | MS.gene62056:intron | 40.0% |
| ! | TGTTAATCTCATGGGCTACT+AGG | - | chr8.2:3344213-3344232 | MS.gene62056:intron | 40.0% |
| AGGGTCTAACAAATGCACTG+TGG | - | chr8.2:3345576-3345595 | MS.gene62056:intron | 45.0% | |
| AGTTCGACTAAGGGTCTGTT+TGG | + | chr8.2:3345604-3345623 | None:intergenic | 45.0% | |
| AGTTTCCCTCCTTGTGAGTT+TGG | + | chr8.2:3343976-3343995 | None:intergenic | 45.0% | |
| ATGGACCTGTGAATAGAGGA+AGG | + | chr8.2:3346057-3346076 | None:intergenic | 45.0% | |
| ATTCAGCCAAACAATGCCCT+TGG | - | chr8.2:3346008-3346027 | MS.gene62056:CDS | 45.0% | |
| CAACAACCAAACTCACAAGG+AGG | - | chr8.2:3343967-3343986 | MS.gene62056:intron | 45.0% | |
| CCAATGTGGCCTTTGTGTTT+AGG | - | chr8.2:3345087-3345106 | MS.gene62056:intron | 45.0% | |
| CCTAAACACAAAGGCCACAT+TGG | + | chr8.2:3345090-3345109 | None:intergenic | 45.0% | |
| CCTTCCACAGCAATAGCAAA+AGG | + | chr8.2:3345206-3345225 | None:intergenic | 45.0% | |
| CTGTGACCTATCTGCTTCAT+AGG | + | chr8.2:3344009-3344028 | None:intergenic | 45.0% | |
| GACAAAGTGGAAGTAAGCCA+AGG | + | chr8.2:3344170-3344189 | None:intergenic | 45.0% | |
| GGGTCTAACAAATGCACTGT+GGG | - | chr8.2:3345577-3345596 | MS.gene62056:intron | 45.0% | |
| GTCATGCCTATGAAGCAGAT+AGG | - | chr8.2:3344000-3344019 | MS.gene62056:CDS | 45.0% | |
| GTGGAAGTAAGCCAAGGATA+AGG | + | chr8.2:3344164-3344183 | None:intergenic | 45.0% | |
| GTTGCAGTGGCACATACAAT+TGG | - | chr8.2:3344562-3344581 | MS.gene62056:intron | 45.0% | |
| TGACACTGATATGTCGACAC+TGG | + | chr8.2:3344983-3345002 | None:intergenic | 45.0% | |
| !! | AACATGGTGGGCTTTGAATG+TGG | - | chr8.2:3344100-3344119 | MS.gene62056:CDS | 45.0% |
| !! | AGGGCATTGTTTGGCTGAAT+TGG | + | chr8.2:3346008-3346027 | None:intergenic | 45.0% |
| !!! | CCTTTTGCTATTGCTGTGGA+AGG | - | chr8.2:3345203-3345222 | MS.gene62056:intron | 45.0% |
| AGCAGATAGGTCACAGCCAT+TGG | - | chr8.2:3344013-3344032 | MS.gene62056:CDS | 50.0% | |
| CAAACAGCAGTGTCCCAGAT+TGG | - | chr8.2:3345251-3345270 | MS.gene62056:intron | 50.0% | |
| GATGAGAGAACCAGCAGCAA+GGG | + | chr8.2:3344192-3344211 | None:intergenic | 50.0% | |
| GATTGCAATGGCAGCACCAA+GGG | + | chr8.2:3346027-3346046 | None:intergenic | 50.0% | |
| GCGCAAACCATACTAGTGTG+TGG | - | chr8.2:3345668-3345687 | MS.gene62056:intron | 50.0% | |
| GGGAATGGACCTGTGAATAG+AGG | + | chr8.2:3346061-3346080 | None:intergenic | 50.0% | |
| GGGGGCTATGATATCCAATG+TGG | - | chr8.2:3345073-3345092 | MS.gene62056:intron | 50.0% | |
| TGATGAGAGAACCAGCAGCA+AGG | + | chr8.2:3344193-3344212 | None:intergenic | 50.0% | |
| TGGCACCTTCCTCTATTCAC+AGG | - | chr8.2:3346049-3346068 | MS.gene62056:CDS | 50.0% | |
| TGTGGAAGGCCCAAAGATGT+GGG | - | chr8.2:3345217-3345236 | MS.gene62056:intron | 50.0% | |
| TTCTGAGCTGCTTGTTCACC+TGG | + | chr8.2:3344056-3344075 | None:intergenic | 50.0% | |
| !! | GAAGGTGCCAAGGATTGCAA+TGG | + | chr8.2:3346039-3346058 | None:intergenic | 50.0% |
| !! | GTGAATAGAGGAAGGTGCCA+AGG | + | chr8.2:3346049-3346068 | None:intergenic | 50.0% |
| !!! | CACCCCTTTTGCTATTGCTG+TGG | - | chr8.2:3345199-3345218 | MS.gene62056:intron | 50.0% |
| ACCAGCAGCAAGGGACAAAG+TGG | + | chr8.2:3344183-3344202 | None:intergenic | 55.0% | |
| AGCCAGCAGCCCACATCTTT+GGG | + | chr8.2:3345229-3345248 | None:intergenic | 55.0% | |
| CTGTGGAAGGCCCAAAGATG+TGG | - | chr8.2:3345216-3345235 | MS.gene62056:intron | 55.0% | |
| GAGCTGCTTGTTCACCTGGT+AGG | + | chr8.2:3344052-3344071 | None:intergenic | 55.0% | |
| GGATTGCAATGGCAGCACCA+AGG | + | chr8.2:3346028-3346047 | None:intergenic | 55.0% | |
| TCCACTTTGTCCCTTGCTGC+TGG | - | chr8.2:3344179-3344198 | MS.gene62056:intron | 55.0% | |
| ! | ATGGGCTACTAGGGTTGCTG+AGG | - | chr8.2:3344223-3344242 | MS.gene62056:intron | 55.0% |
| ! | GGTGCTGCCATTGCAATCCT+TGG | - | chr8.2:3346029-3346048 | MS.gene62056:CDS | 55.0% |
| !! | GCAGCACCAAGGGCATTGTT+TGG | + | chr8.2:3346017-3346036 | None:intergenic | 55.0% |
| CAGCCAGCAGCCCACATCTT+TGG | + | chr8.2:3345230-3345249 | None:intergenic | 60.0% | |
| ! | CAAAGATGTGGGCTGCTGGC+TGG | - | chr8.2:3345228-3345247 | MS.gene62056:intron | 60.0% |
| ! | GGCCCAAAGATGTGGGCTGC+TGG | - | chr8.2:3345224-3345243 | MS.gene62056:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 3343783 | 3346257 | 3343783 | ID=MS.gene62056 |
| chr8.2 | mRNA | 3343783 | 3346257 | 3343783 | ID=MS.gene62056.t1;Parent=MS.gene62056 |
| chr8.2 | exon | 3345754 | 3346257 | 3345754 | ID=MS.gene62056.t1.exon1;Parent=MS.gene62056.t1 |
| chr8.2 | CDS | 3345754 | 3346257 | 3345754 | ID=cds.MS.gene62056.t1;Parent=MS.gene62056.t1 |
| chr8.2 | exon | 3345253 | 3345478 | 3345253 | ID=MS.gene62056.t1.exon2;Parent=MS.gene62056.t1 |
| chr8.2 | CDS | 3345253 | 3345478 | 3345253 | ID=cds.MS.gene62056.t1;Parent=MS.gene62056.t1 |
| chr8.2 | exon | 3344752 | 3344974 | 3344752 | ID=MS.gene62056.t1.exon3;Parent=MS.gene62056.t1 |
| chr8.2 | CDS | 3344752 | 3344974 | 3344752 | ID=cds.MS.gene62056.t1;Parent=MS.gene62056.t1 |
| chr8.2 | exon | 3343970 | 3344183 | 3343970 | ID=MS.gene62056.t1.exon4;Parent=MS.gene62056.t1 |
| chr8.2 | CDS | 3343970 | 3344183 | 3343970 | ID=cds.MS.gene62056.t1;Parent=MS.gene62056.t1 |
| chr8.2 | exon | 3343783 | 3343794 | 3343783 | ID=MS.gene62056.t1.exon5;Parent=MS.gene62056.t1 |
| chr8.2 | CDS | 3343783 | 3343794 | 3343783 | ID=cds.MS.gene62056.t1;Parent=MS.gene62056.t1 |
| Gene Sequence |
| Protein sequence |
