AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar XinJiangDaYe / MS.gene62083

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 63 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGCTTTGTTGTTATGTATT+TGG 0.132518 6.1:+28830395 MS.gene62083:CDS
TCCTGAAGAGTTTGCTGGCT+TGG 0.242918 6.1:+28832022 MS.gene62083:CDS
TAGCTCCTACTCCTGAATTA+TGG 0.261887 6.1:+28830325 MS.gene62083:CDS
TTCTAATTCTTCTTCTGTTA+TGG 0.267894 6.1:+28832475 MS.gene62083:CDS
AACAATTAGTAACGGTGATT+TGG 0.271982 6.1:+28830146 MS.gene62083:CDS
GGTTGTGTCGTTCTTGAATC+TGG 0.284355 6.1:+28830429 MS.gene62083:CDS
CGAAGTTCGAGAAGGGAAAA+TGG 0.297664 6.1:+28832361 MS.gene62083:CDS
GTCTAAAGTATTCAACAATA+AGG 0.308450 6.1:+28830284 MS.gene62083:CDS
TTGTTTATGTGAAAGATATA+AGG 0.311677 6.1:+28832312 MS.gene62083:intron
GATTGGATAGGAAAGTCATT+TGG 0.331486 6.1:+28830261 MS.gene62083:CDS
AAAACTAAAGTCCATAATTC+AGG 0.343342 6.1:-28830336 None:intergenic
CTTGAATCTGGCACTGGAAG+TGG 0.346516 6.1:+28830441 MS.gene62083:CDS
GCCAAGCCAGCAAACTCTTC+AGG 0.354828 6.1:-28832023 None:intergenic
ATGTATTTGGAGATTGTTCC+TGG 0.385811 6.1:+28830408 MS.gene62083:CDS
GACGGTAATGACGGCTCTAA+TGG 0.408113 6.1:+28832398 MS.gene62083:CDS
GATCCCTCAGATACTGTTAC+TGG 0.419969 6.1:-28830201 None:intergenic
ATTGGATAGGAAAGTCATTT+GGG 0.422230 6.1:+28830262 MS.gene62083:CDS
CGGGAAAGTACCGGTGAAGT+TGG 0.459909 6.1:-28832183 None:intergenic
TCTAAAGTATTCAACAATAA+GGG 0.468151 6.1:+28830285 MS.gene62083:CDS
TTGAATCTGGCACTGGAAGT+GGG 0.495210 6.1:+28830442 MS.gene62083:CDS
GTTGTACTTGTTCAATGCAC+GGG 0.495893 6.1:-28832139 None:intergenic
GTCGTTCTTGAATCTGGCAC+TGG 0.503209 6.1:+28830435 MS.gene62083:CDS
CTTTAACTACTTCACTTGCA+AGG 0.505822 6.1:+28830466 MS.gene62083:CDS
ATTTGGCAATTGTTTATGAA+AGG 0.507354 6.1:+28830163 MS.gene62083:CDS
ATGGAAAGCTCTGAGATTGA+CGG 0.512304 6.1:+28832380 MS.gene62083:CDS
TTTAAACATTCAGATTGGAT+AGG 0.513874 6.1:+28830249 MS.gene62083:CDS
GCAAGGGCAGTTGCTCCTAC+AGG 0.518867 6.1:+28830483 MS.gene62083:CDS
TACTTGTTTATTGAAAATGT+TGG 0.523271 6.1:+28830089 MS.gene62083:CDS
CGTTGTACTTGTTCAATGCA+CGG 0.540755 6.1:-28832140 None:intergenic
AAAGTCCATAATTCAGGAGT+AGG 0.545264 6.1:-28830330 None:intergenic
ATAAGCAGCTTAGTAACTGC+AGG 0.549586 6.1:+28831972 MS.gene62083:CDS
GCAGGAGTGAGGGACATTCA+AGG 0.551907 6.1:+28831990 MS.gene62083:CDS
GCTTAGTAACTGCAGGAGTG+AGG 0.562608 6.1:+28831979 MS.gene62083:CDS
GAACGTTGCCTCCTCTTGCA+AGG 0.567462 6.1:-28832428 None:intergenic
GGAATAGCTAGCCAAGGTTG+AGG 0.572196 6.1:-28832068 None:intergenic
GTGAGGGACATTCAAGGTGA+GGG 0.573477 6.1:+28831996 MS.gene62083:CDS
ATGGTTCTCTTCCTTGCAAG+AGG 0.575002 6.1:+28832417 MS.gene62083:CDS
TTTAACTACTTCACTTGCAA+GGG 0.578833 6.1:+28830467 MS.gene62083:CDS
GAAGCCAGTAACAGTATCTG+AGG 0.579372 6.1:+28830197 MS.gene62083:CDS
ACAATGCAATCCAACTTCAC+CGG 0.584109 6.1:+28832173 MS.gene62083:CDS
GTTCTCTTCCTTGCAAGAGG+AGG 0.584259 6.1:+28832420 MS.gene62083:CDS
GATTCAAGAACGACACAACC+AGG 0.585429 6.1:-28830426 None:intergenic
AGTAACAGTATCTGAGGGAT+CGG 0.586054 6.1:+28830203 MS.gene62083:CDS
TCTGAGATTGACGGTAATGA+CGG 0.588128 6.1:+28832389 MS.gene62083:CDS
CTTAGTAACTGCAGGAGTGA+GGG 0.595594 6.1:+28831980 MS.gene62083:CDS
TTTAATAGAACAATTAGTAA+CGG 0.596180 6.1:+28830138 MS.gene62083:CDS
AAGAGGAGGCAACGTTCAGA+TGG 0.606722 6.1:+28832434 MS.gene62083:CDS
AACGTATAAACATGTCCTGT+AGG 0.611682 6.1:-28830498 None:intergenic
CGGACATACGAAGTTCGAGA+AGG 0.611846 6.1:+28832353 MS.gene62083:CDS
CTCGAACTTCGTATGTCCGT+AGG 0.612530 6.1:-28832349 None:intergenic
TGACCTCTAGCTTCACCACA+TGG 0.618356 6.1:-28832503 None:intergenic
ACGTTCAGATGGAGCTAGCG+TGG 0.623569 6.1:+28832445 MS.gene62083:CDS
AGTGAGGGACATTCAAGGTG+AGG 0.624772 6.1:+28831995 MS.gene62083:CDS
GGACATACGAAGTTCGAGAA+GGG 0.625372 6.1:+28832354 MS.gene62083:CDS
TCTGTTATGGCTAGACCATG+TGG 0.628693 6.1:+28832488 MS.gene62083:CDS
AACAAAGATCTGGATCAGCT+AGG 0.636973 6.1:+28830532 MS.gene62083:CDS
AGACCATGTGGTGAAGCTAG+AGG 0.638065 6.1:+28832500 MS.gene62083:CDS
AAAGTATTCAACAATAAGGG+CGG 0.646223 6.1:+28830288 MS.gene62083:CDS
TATATAGAATCTGTGTCCTG+TGG 0.646737 6.1:-28830362 None:intergenic
GCTGAAGGAATAGCTAGCCA+AGG 0.647664 6.1:-28832074 None:intergenic
AAGCCAGTAACAGTATCTGA+GGG 0.661239 6.1:+28830198 MS.gene62083:CDS
TTGTACTTGTTCAATGCACG+GGG 0.675813 6.1:-28832138 None:intergenic
GGTGAAGCTAGAGGTCACAC+TGG 0.683965 6.1:+28832509 MS.gene62083:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AGTCAATTATATATAAAACA+AGG - chr6.1:28831608-28831627 None:intergenic 15.0%
!! GTAACTTATATATTGTATTA+CGG - chr6.1:28831547-28831566 None:intergenic 15.0%
!! TTTAATAGAACAATTAGTAA+CGG + chr6.1:28830138-28830157 MS.gene62083:CDS 15.0%
!!! TTTTTACAATGAAAAAACTT+AGG + chr6.1:28831494-28831513 MS.gene62083:intron 15.0%
!! AAATAAGATACGTATAAAAG+AGG - chr6.1:28832214-28832233 None:intergenic 20.0%
!! ACATAAACAAACATTTACAA+AGG - chr6.1:28832302-28832321 None:intergenic 20.0%
!! TACTTGTTTATTGAAAATGT+TGG + chr6.1:28830089-28830108 MS.gene62083:CDS 20.0%
!! TTGTTTATGTGAAAGATATA+AGG + chr6.1:28832312-28832331 MS.gene62083:intron 20.0%
!!! TCTAAAGTATTCAACAATAA+GGG + chr6.1:28830285-28830304 MS.gene62083:CDS 20.0%
! AAAACTAAAGTCCATAATTC+AGG - chr6.1:28830339-28830358 None:intergenic 25.0%
! ATATACATGTGCTTATCTTT+AGG + chr6.1:28830589-28830608 MS.gene62083:intron 25.0%
! ATTTGGCAATTGTTTATGAA+AGG + chr6.1:28830163-28830182 MS.gene62083:CDS 25.0%
! CTACCAAAAAACTAGAATAA+CGG - chr6.1:28830719-28830738 None:intergenic 25.0%
! TACGTATAAAAGAGGAAAAT+CGG - chr6.1:28832206-28832225 None:intergenic 25.0%
! TTCTAATTCTTCTTCTGTTA+TGG + chr6.1:28832475-28832494 MS.gene62083:CDS 25.0%
! TTTAAACATTCAGATTGGAT+AGG + chr6.1:28830249-28830268 MS.gene62083:CDS 25.0%
! TTTCTGTAATATGCTATTGA+TGG + chr6.1:28831693-28831712 MS.gene62083:intron 25.0%
!! GTCTAAAGTATTCAACAATA+AGG + chr6.1:28830284-28830303 MS.gene62083:CDS 25.0%
!! TAATTGTACTCAACTTTTGT+TGG + chr6.1:28831826-28831845 MS.gene62083:intron 25.0%
!!! GAGAATGATTTTTTCAATAG+CGG + chr6.1:28831276-28831295 MS.gene62083:intron 25.0%
!!! GTGTTTTTAAACATTCAGAT+TGG + chr6.1:28830244-28830263 MS.gene62083:CDS 25.0%
AAAATCACGATCAAACTGAT+GGG - chr6.1:28831032-28831051 None:intergenic 30.0%
AACAATTAGTAACGGTGATT+TGG + chr6.1:28830146-28830165 MS.gene62083:CDS 30.0%
ACGTATAAAAGAGGAAAATC+GGG - chr6.1:28832205-28832224 None:intergenic 30.0%
ACTGTAATGGTGTGTTTATA+TGG - chr6.1:28830814-28830833 None:intergenic 30.0%
ATTGGATAGGAAAGTCATTT+GGG + chr6.1:28830262-28830281 MS.gene62083:CDS 30.0%
ATTGTAAAAATAAGCCACGT+TGG - chr6.1:28831484-28831503 None:intergenic 30.0%
CTATCTTCTATTTCACATAG+CGG + chr6.1:28831668-28831687 MS.gene62083:intron 30.0%
GACTTATTTCAACTGTTATG+CGG + chr6.1:28831624-28831643 MS.gene62083:intron 30.0%
GCAAAAATGTTACGATATGA+CGG + chr6.1:28832098-28832117 MS.gene62083:CDS 30.0%
GCTGATATAGGAACTATATT+GGG + chr6.1:28831407-28831426 MS.gene62083:intron 30.0%
TATGTAATATTGCATCAGCT+AGG + chr6.1:28831195-28831214 MS.gene62083:intron 30.0%
TATTGTATTACGGTGAATAC+AGG - chr6.1:28831537-28831556 None:intergenic 30.0%
TGAAATAGAAGATAGTGTTG+CGG - chr6.1:28831663-28831682 None:intergenic 30.0%
TTGTAAAAATAAGCCACGTT+GGG - chr6.1:28831483-28831502 None:intergenic 30.0%
TTTAACTACTTCACTTGCAA+GGG + chr6.1:28830467-28830486 MS.gene62083:CDS 30.0%
TTTCTCGTTCTAGTAATTGT+AGG + chr6.1:28831743-28831762 MS.gene62083:intron 30.0%
! AAAGTATTCAACAATAAGGG+CGG + chr6.1:28830288-28830307 MS.gene62083:CDS 30.0%
! AGACAAAAGAGAATTTTAGG+CGG + chr6.1:28830758-28830777 MS.gene62083:intron 30.0%
! AGCAGACAAAAGAGAATTTT+AGG + chr6.1:28830755-28830774 MS.gene62083:intron 30.0%
! ATACGATTTTCAGACTGTAA+TGG - chr6.1:28830827-28830846 None:intergenic 30.0%
! ATTTGATTTCCATGAGCATA+GGG + chr6.1:28831162-28831181 MS.gene62083:intron 30.0%
! CAGTCTGAAAATCGTATTTT+TGG + chr6.1:28830830-28830849 MS.gene62083:intron 30.0%
! GAAAGATATAAGGACTTTTG+AGG + chr6.1:28832322-28832341 MS.gene62083:intron 30.0%
! TTTCTAGTGTTGTCAACTAT+TGG + chr6.1:28830630-28830649 MS.gene62083:intron 30.0%
!! ATACTTGTTTTTCTCCTTGT+AGG + chr6.1:28831928-28831947 MS.gene62083:intron 30.0%
!! ATCTTGCAATTCATTGATTC+AGG - chr6.1:28830908-28830927 None:intergenic 30.0%
!! CAGCTTTGTTGTTATGTATT+TGG + chr6.1:28830395-28830414 MS.gene62083:CDS 30.0%
!! TACTTGTTTTTCTCCTTGTA+GGG + chr6.1:28831929-28831948 MS.gene62083:intron 30.0%
!!! AGTGTTGCAGTTTTTTTTAG+CGG - chr6.1:28830684-28830703 None:intergenic 30.0%
!!! TTGCCGTTATTCTAGTTTTT+TGG + chr6.1:28830713-28830732 MS.gene62083:intron 30.0%
AAAGTCCATAATTCAGGAGT+AGG - chr6.1:28830333-28830352 None:intergenic 35.0%
AACGTATAAACATGTCCTGT+AGG - chr6.1:28830501-28830520 None:intergenic 35.0%
ACACATGTATCAAACATCAG+AGG - chr6.1:28831236-28831255 None:intergenic 35.0%
ACCCTGCATGCAAATAAAAA+GGG - chr6.1:28831584-28831603 None:intergenic 35.0%
ACTTGAGATGTTCAATGCAA+AGG + chr6.1:28831889-28831908 MS.gene62083:intron 35.0%
ATAAACATGCCCTTCACAAA+TGG - chr6.1:28831140-28831159 None:intergenic 35.0%
ATCCCTTCATAAATTGGCTA+TGG + chr6.1:28831074-28831093 MS.gene62083:intron 35.0%
ATGTATTTGGAGATTGTTCC+TGG + chr6.1:28830408-28830427 MS.gene62083:CDS 35.0%
CAAAATCACGATCAAACTGA+TGG - chr6.1:28831033-28831052 None:intergenic 35.0%
CGTAGTAGTTATGCAACTAA+TGG + chr6.1:28832249-28832268 MS.gene62083:intron 35.0%
CTTTAACTACTTCACTTGCA+AGG + chr6.1:28830466-28830485 MS.gene62083:CDS 35.0%
GAAATAGAAGATAGTGTTGC+GGG - chr6.1:28831662-28831681 None:intergenic 35.0%
GATTGGATAGGAAAGTCATT+TGG + chr6.1:28830261-28830280 MS.gene62083:CDS 35.0%
GCATGCAAATAAAAAGGGAA+TGG - chr6.1:28831579-28831598 None:intergenic 35.0%
GGCTGATATAGGAACTATAT+TGG + chr6.1:28831406-28831425 MS.gene62083:intron 35.0%
GGTTATCTTCCTTGAAATTC+CGG - chr6.1:28830887-28830906 None:intergenic 35.0%
GTATGGTCGGAATCAAAATT+TGG - chr6.1:28830975-28830994 None:intergenic 35.0%
GTTATCTTCCTTGAAATTCC+GGG - chr6.1:28830886-28830905 None:intergenic 35.0%
TATATAGAATCTGTGTCCTG+TGG - chr6.1:28830365-28830384 None:intergenic 35.0%
TTCTCAAAATCATCCCTACA+AGG - chr6.1:28831945-28831964 None:intergenic 35.0%
! CATTTGATTTCCATGAGCAT+AGG + chr6.1:28831161-28831180 MS.gene62083:intron 35.0%
! GATTTTCACGAACAAAGATC+TGG + chr6.1:28830522-28830541 MS.gene62083:CDS 35.0%
! TCGGTTTTACAGAATCGATT+CGG + chr6.1:28830222-28830241 MS.gene62083:CDS 35.0%
!! AGGGATGATTTTGAGAAGAT+TGG + chr6.1:28831948-28831967 MS.gene62083:intron 35.0%
!! TCCCTTTTTATTTGCATGCA+GGG + chr6.1:28831580-28831599 MS.gene62083:intron 35.0%
!! TTCCCTTTTTATTTGCATGC+AGG + chr6.1:28831579-28831598 MS.gene62083:intron 35.0%
!!! ATCGTATTTTTGGTGAAACG+TGG + chr6.1:28830840-28830859 MS.gene62083:intron 35.0%
AACAAAGATCTGGATCAGCT+AGG + chr6.1:28830532-28830551 MS.gene62083:CDS 40.0%
AAGCCAGTAACAGTATCTGA+GGG + chr6.1:28830198-28830217 MS.gene62083:CDS 40.0%
ACAATGCAATCCAACTTCAC+CGG + chr6.1:28832173-28832192 MS.gene62083:CDS 40.0%
ACCGCAGAAAATTGTAGGTA+CGG - chr6.1:28830935-28830954 None:intergenic 40.0%
ACTATAGTGCTATCACATGG+TGG + chr6.1:28831300-28831319 MS.gene62083:intron 40.0%
AGTAACAGTATCTGAGGGAT+CGG + chr6.1:28830203-28830222 MS.gene62083:CDS 40.0%
ATAAGCAGCTTAGTAACTGC+AGG + chr6.1:28831972-28831991 MS.gene62083:CDS 40.0%
ATCAAACATCAGAGGAAGTC+AGG - chr6.1:28831228-28831247 None:intergenic 40.0%
CACCCTGCATGCAAATAAAA+AGG - chr6.1:28831585-28831604 None:intergenic 40.0%
CCTTCATAAATTGGCTATGG+CGG + chr6.1:28831077-28831096 MS.gene62083:intron 40.0%
CGCCATAGCCAATTTATGAA+GGG - chr6.1:28831079-28831098 None:intergenic 40.0%
CGTTGTACTTGTTCAATGCA+CGG - chr6.1:28832143-28832162 None:intergenic 40.0%
CTTCATAAATTGGCTATGGC+GGG + chr6.1:28831078-28831097 MS.gene62083:intron 40.0%
GGTCGGAATCAAAATTTGGT+GGG - chr6.1:28830971-28830990 None:intergenic 40.0%
GTTGTACTTGTTCAATGCAC+GGG - chr6.1:28832142-28832161 None:intergenic 40.0%
TAGCTCCTACTCCTGAATTA+TGG + chr6.1:28830325-28830344 MS.gene62083:CDS 40.0%
TGGTCGGAATCAAAATTTGG+TGG - chr6.1:28830972-28830991 None:intergenic 40.0%
TTGTACTTGTTCAATGCACG+GGG - chr6.1:28832141-28832160 None:intergenic 40.0%
! ACCGTACCTACAATTTTCTG+CGG + chr6.1:28830931-28830950 MS.gene62083:intron 40.0%
! CGTAACATTTTTGCAGCTGA+AGG - chr6.1:28832092-28832111 None:intergenic 40.0%
! TCTGAGATTGACGGTAATGA+CGG + chr6.1:28832389-28832408 MS.gene62083:CDS 40.0%
! TGCTATTGATGGCACTTTCA+TGG + chr6.1:28831704-28831723 MS.gene62083:intron 40.0%
! TTTTGGATCTACCTCAACCT+TGG + chr6.1:28832057-28832076 MS.gene62083:CDS 40.0%
!! ATGGAAAGCTCTGAGATTGA+CGG + chr6.1:28832380-28832399 MS.gene62083:CDS 40.0%
!! CGTATGATTTTGATACCCCT+TGG - chr6.1:28831007-28831026 None:intergenic 40.0%
!! CTATTGGCTCTATAGCATAG+CGG + chr6.1:28830646-28830665 MS.gene62083:intron 40.0%
!! GAAGTTTTGCTGGCTGATAT+AGG + chr6.1:28831395-28831414 MS.gene62083:intron 40.0%
!! TTTTTGGTGAAACGTGGTCA+TGG + chr6.1:28830846-28830865 MS.gene62083:intron 40.0%
!!! ATTTTAGGCGGTGTTGTCAA+TGG + chr6.1:28830770-28830789 MS.gene62083:intron 40.0%
!!! CTTGGCTGATGCAGTTTTTT+TGG + chr6.1:28832040-28832059 MS.gene62083:CDS 40.0%
!!! GATCGTGATTTTGACTTCCT+TGG + chr6.1:28831040-28831059 MS.gene62083:intron 40.0%
!!! GGACTTTAGTTTTAAGCCAC+AGG + chr6.1:28830346-28830365 MS.gene62083:CDS 40.0%
AACATGCCCTTCACAAATGG+TGG - chr6.1:28831137-28831156 None:intergenic 45.0%
ATGGTTCTCTTCCTTGCAAG+AGG + chr6.1:28832417-28832436 MS.gene62083:CDS 45.0%
CCGCCATAGCCAATTTATGA+AGG - chr6.1:28831080-28831099 None:intergenic 45.0%
CGAAGTTCGAGAAGGGAAAA+TGG + chr6.1:28832361-28832380 MS.gene62083:CDS 45.0%
CTTAGTAACTGCAGGAGTGA+GGG + chr6.1:28831980-28831999 MS.gene62083:CDS 45.0%
GAAGCCAGTAACAGTATCTG+AGG + chr6.1:28830197-28830216 MS.gene62083:CDS 45.0%
GATCCCTCAGATACTGTTAC+TGG - chr6.1:28830204-28830223 None:intergenic 45.0%
GATTCAAGAACGACACAACC+AGG - chr6.1:28830429-28830448 None:intergenic 45.0%
GCAGAAAATTGTAGGTACGG+TGG - chr6.1:28830932-28830951 None:intergenic 45.0%
GGACATACGAAGTTCGAGAA+GGG + chr6.1:28832354-28832373 MS.gene62083:CDS 45.0%
GGATCACCGCAGAAAATTGT+AGG - chr6.1:28830940-28830959 None:intergenic 45.0%
GGCACTATAGTGCTATCACA+TGG + chr6.1:28831297-28831316 MS.gene62083:intron 45.0%
TCCTTGAAATTCCGGGTTCA+CGG - chr6.1:28830879-28830898 None:intergenic 45.0%
TCTGTTATGGCTAGACCATG+TGG + chr6.1:28832488-28832507 MS.gene62083:CDS 45.0%
TGAGTCCACTATGAAAACCG+TGG + chr6.1:28831330-28831349 MS.gene62083:intron 45.0%
TGCTTGTATACACGTGTGTG+CGG + chr6.1:28831860-28831879 MS.gene62083:intron 45.0%
TTTCGCTATCAGGACAGTAG+CGG + chr6.1:28831364-28831383 MS.gene62083:intron 45.0%
! ACAATTTTCTGCGGTGATCC+TGG + chr6.1:28830940-28830959 MS.gene62083:intron 45.0%
! ACTGTCCTGATAGCGAAACT+GGG - chr6.1:28831362-28831381 None:intergenic 45.0%
! GAGGAAAATCGGGAAAGTAC+CGG - chr6.1:28832195-28832214 None:intergenic 45.0%
! GGCTGCTATTGAAGTTTTGC+TGG + chr6.1:28831385-28831404 MS.gene62083:intron 45.0%
! GGTTGTGTCGTTCTTGAATC+TGG + chr6.1:28830429-28830448 MS.gene62083:CDS 45.0%
! GGTTTTCCTGAAGAGTTTGC+TGG + chr6.1:28832017-28832036 MS.gene62083:CDS 45.0%
! TACTGTCCTGATAGCGAAAC+TGG - chr6.1:28831363-28831382 None:intergenic 45.0%
! TTGAATCTGGCACTGGAAGT+GGG + chr6.1:28830442-28830461 MS.gene62083:CDS 45.0%
!!! GATTTTGACTTCCTTGGCCA+TGG + chr6.1:28831046-28831065 MS.gene62083:intron 45.0%
!!! GGACTTTTGAGGTACTCCTA+CGG + chr6.1:28832333-28832352 MS.gene62083:CDS 45.0%
AAATTCCGGGTTCACGGGTT+GGG - chr6.1:28830873-28830892 None:intergenic 50.0%
AAGAGGAGGCAACGTTCAGA+TGG + chr6.1:28832434-28832453 MS.gene62083:CDS 50.0%
ACCATACTCCAGCATGCCAA+GGG + chr6.1:28830988-28831007 MS.gene62083:intron 50.0%
AGACCATGTGGTGAAGCTAG+AGG + chr6.1:28832500-28832519 MS.gene62083:CDS 50.0%
AGTGAGGGACATTCAAGGTG+AGG + chr6.1:28831995-28832014 MS.gene62083:CDS 50.0%
CCTTGAAATTCCGGGTTCAC+GGG - chr6.1:28830878-28830897 None:intergenic 50.0%
CGGACATACGAAGTTCGAGA+AGG + chr6.1:28832353-28832372 MS.gene62083:CDS 50.0%
CTCGAACTTCGTATGTCCGT+AGG - chr6.1:28832352-28832371 None:intergenic 50.0%
GATTTCCATGAGCATAGGGC+TGG + chr6.1:28831166-28831185 MS.gene62083:intron 50.0%
GCGGGCATCCCTTCATAAAT+TGG + chr6.1:28831068-28831087 MS.gene62083:intron 50.0%
GCTATCCCAGTTTCGCTATC+AGG + chr6.1:28831354-28831373 MS.gene62083:intron 50.0%
GCTGAAGGAATAGCTAGCCA+AGG - chr6.1:28832077-28832096 None:intergenic 50.0%
GCTTAGTAACTGCAGGAGTG+AGG + chr6.1:28831979-28831998 MS.gene62083:CDS 50.0%
GGAATAGCTAGCCAAGGTTG+AGG - chr6.1:28832071-28832090 None:intergenic 50.0%
GTCGTTCTTGAATCTGGCAC+TGG + chr6.1:28830435-28830454 MS.gene62083:CDS 50.0%
GTGAGGGACATTCAAGGTGA+GGG + chr6.1:28831996-28832015 MS.gene62083:CDS 50.0%
GTTCTCTTCCTTGCAAGAGG+AGG + chr6.1:28832420-28832439 MS.gene62083:CDS 50.0%
TTGGCATGCTGGAGTATGGT+CGG - chr6.1:28830988-28831007 None:intergenic 50.0%
TTTGATACCCCTTGGCATGC+TGG - chr6.1:28830999-28831018 None:intergenic 50.0%
! AAAATTTGGTGGGTGCAGCC+AGG - chr6.1:28830961-28830980 None:intergenic 50.0%
! CTTGAATCTGGCACTGGAAG+TGG + chr6.1:28830441-28830460 MS.gene62083:CDS 50.0%
! GACGGTAATGACGGCTCTAA+TGG + chr6.1:28832398-28832417 MS.gene62083:CDS 50.0%
! TAGCGCCACGGTTTTCATAG+TGG - chr6.1:28831338-28831357 None:intergenic 50.0%
! TGACCTCTAGCTTCACCACA+TGG - chr6.1:28832506-28832525 None:intergenic 50.0%
! TTTGACTTCCTTGGCCATGG+CGG + chr6.1:28831049-28831068 MS.gene62083:intron 50.0%
!! TCCTGAAGAGTTTGCTGGCT+TGG + chr6.1:28832022-28832041 MS.gene62083:CDS 50.0%
!! TTAGGCGGTGTTGTCAATGG+TGG + chr6.1:28830773-28830792 MS.gene62083:intron 50.0%
ACCGTGGCCACCATTTGTGA+AGG + chr6.1:28831127-28831146 MS.gene62083:intron 55.0%
ACGTTCAGATGGAGCTAGCG+TGG + chr6.1:28832445-28832464 MS.gene62083:CDS 55.0%
ATCTGCATGTGTGCCCAACG+TGG + chr6.1:28831467-28831486 MS.gene62083:intron 55.0%
CCATACTCCAGCATGCCAAG+GGG + chr6.1:28830989-28831008 MS.gene62083:intron 55.0%
CCCGTGAACCCGGAATTTCA+AGG + chr6.1:28830875-28830894 MS.gene62083:intron 55.0%
CCCTTCACAAATGGTGGCCA+CGG - chr6.1:28831131-28831150 None:intergenic 55.0%
CCGTGGCCACCATTTGTGAA+GGG + chr6.1:28831128-28831147 MS.gene62083:intron 55.0%
CTGATCCAGCCCTATGCTCA+TGG - chr6.1:28831174-28831193 None:intergenic 55.0%
GAAATTCCGGGTTCACGGGT+TGG - chr6.1:28830874-28830893 None:intergenic 55.0%
GAACGTTGCCTCCTCTTGCA+AGG - chr6.1:28832431-28832450 None:intergenic 55.0%
GACCATACTCCAGCATGCCA+AGG + chr6.1:28830987-28831006 MS.gene62083:intron 55.0%
GCAGGAGTGAGGGACATTCA+AGG + chr6.1:28831990-28832009 MS.gene62083:CDS 55.0%
GCCAAGCCAGCAAACTCTTC+AGG - chr6.1:28832026-28832045 None:intergenic 55.0%
GGTGAAGCTAGAGGTCACAC+TGG + chr6.1:28832509-28832528 MS.gene62083:CDS 55.0%
TCTGCCTCACAATTCCACCG+TGG + chr6.1:28831111-28831130 MS.gene62083:intron 55.0%
TTATGAAGGGATGCCCGCCA+TGG - chr6.1:28831066-28831085 None:intergenic 55.0%
TTCACAAATGGTGGCCACGG+TGG - chr6.1:28831128-28831147 None:intergenic 55.0%
TTGACTTCCTTGGCCATGGC+GGG + chr6.1:28831050-28831069 MS.gene62083:intron 55.0%
!! CGGGAAAGTACCGGTGAAGT+TGG - chr6.1:28832186-28832205 None:intergenic 55.0%
!! GCGGTGTTGTCAATGGTGGA+AGG + chr6.1:28830777-28830796 MS.gene62083:intron 55.0%
ATGGACCCAACCCGTGAACC+CGG + chr6.1:28830865-28830884 MS.gene62083:intron 60.0%
CCCCTTGGCATGCTGGAGTA+TGG - chr6.1:28830992-28831011 None:intergenic 60.0%
GCAAGGGCAGTTGCTCCTAC+AGG + chr6.1:28830483-28830502 MS.gene62083:CDS 60.0%
GCGAAACTGGGATAGCGCCA+CGG - chr6.1:28831350-28831369 None:intergenic 60.0%
GTGGCCACGGTGGAATTGTG+AGG - chr6.1:28831118-28831137 None:intergenic 60.0%
AGGGATGCCCGCCATGGCCA+AGG - chr6.1:28831060-28831079 None:intergenic 70.0%


Chromosome Type Strat End Strand Name
chr6.1 gene 28830088 28832559 28830088 ID=MS.gene62083
chr6.1 mRNA 28830088 28832559 28830088 ID=MS.gene62083.t1;Parent=MS.gene62083
chr6.1 exon 28830088 28830553 28830088 ID=MS.gene62083.t1.exon1;Parent=MS.gene62083.t1
chr6.1 CDS 28830088 28830553 28830088 ID=cds.MS.gene62083.t1;Parent=MS.gene62083.t1
chr6.1 exon 28831950 28832194 28831950 ID=MS.gene62083.t1.exon2;Parent=MS.gene62083.t1
chr6.1 CDS 28831950 28832194 28831950 ID=cds.MS.gene62083.t1;Parent=MS.gene62083.t1
chr6.1 exon 28832327 28832559 28832327 ID=MS.gene62083.t1.exon3;Parent=MS.gene62083.t1
chr6.1 CDS 28832327 28832559 28832327 ID=cds.MS.gene62083.t1;Parent=MS.gene62083.t1
Gene Sequence

>MS.gene62083

GTACTTGTTTATTGAAAATGTTGGCTATCGATTCTACAAGAAAGATATCATTTAATAGAACAATTAGTAACGGTGATTTGGCAATTGTTTATGAAAGGCATGATAGCATGAAGCCAGTAACAGTATCTGAGGGATCGGTTTTACAGAATCGATTCGGTGTTTTTAAACATTCAGATTGGATAGGAAAGTCATTTGGGTCTAAAGTATTCAACAATAAGGGCGGTTTTGTTTACTTATTAGCTCCTACTCCTGAATTATGGACTTTAGTTTTAAGCCACAGGACACAGATTCTATATATTGCAGATATCAGCTTTGTTGTTATGTATTTGGAGATTGTTCCTGGTTGTGTCGTTCTTGAATCTGGCACTGGAAGTGGGTCTTTAACTACTTCACTTGCAAGGGCAGTTGCTCCTACAGGACATGTTTATACGTTTGATTTTCACGAACAAAGATCTGGATCAGCTAGGTAATACTGCACTTGTCTTTCTCTGACGATATTTGATATACATGTGCTTATCTTTAGGCAATGTTGTATGTGTTATTTTCTAGTGTTGTCAACTATTGGCTCTATAGCATAGCGGATTTTGATGAATCCGCTAAAAAAAACTGCAACACTATCATAGTTTTGCCGTTATTCTAGTTTTTTGGTAGTTGATGTAGCAACAATAGCAGACAAAAGAGAATTTTAGGCGGTGTTGTCAATGGTGGAAGGCTAAAAATCTGCCATATAAACACACCATTACAGTCTGAAAATCGTATTTTTGGTGAAACGTGGTCATGGACCCAACCCGTGAACCCGGAATTTCAAGGAAGATAACCTGAATCAATGAATTGCAAGATTCCACCGTACCTACAATTTTCTGCGGTGATCCTGGCTGCACCCACCAAATTTTGATTCCGACCATACTCCAGCATGCCAAGGGGTATCAAAATCATACGATCCCATCAGTTTGATCGTGATTTTGACTTCCTTGGCCATGGCGGGCATCCCTTCATAAATTGGCTATGGCGGGCGTAAAAAAATCTGCCTCACAATTCCACCGTGGCCACCATTTGTGAAGGGCATGTTTATACATTTGATTTCCATGAGCATAGGGCTGGATCAGCTATGTAATATTGCATCAGCTAGGTGCTGCACCTGACTTCCTCTGATGTTTGATACATGTGTGTTTATCTTTAGCAAATGTCGAGAATGATTTTTTCAATAGCGGCACTATAGTGCTATCACATGGTGGATTTTGATGAGTCCACTATGAAAACCGTGGCGCTATCCCAGTTTCGCTATCAGGACAGTAGCGGCTGCTATTGAAGTTTTGCTGGCTGATATAGGAACTATATTGGGACTTTTTTTCATTTTTTTTAAAATAATAAAATTGAAGATCTGCATGTGTGCCCAACGTGGCTTATTTTTACAATGAAAAAACTTAGGAGTCAGTGAATATTACTCCTGTATTCACCGTAATACAATATATAAGTTACGTTCTGCTTCCATTCCCTTTTTATTTGCATGCAGGGTGCCTTGTTTTATATATAATTGACTTATTTCAACTGTTATGCGGTTTCTGCTATTGCCCGCAACACTATCTTCTATTTCACATAGCGGATTTTCTGTAATATGCTATTGATGGCACTTTCATGGCTTTGCATTATATTTTTTTCTCGTTCTAGTAATTGTAGGTAATATTTTATGTGATCTAATACTACTTTCAGAATGTCAGTGCTTAAGTGCAAATTTATTTAATTGTACTCAACTTTTGTTGGATTCATTTATGTGCTTGTATACACGTGTGTGCGGTGATAAACTTGAGATGTTCAATGCAAAGGTGAATTAGAAATATGAATACTTGTTTTTCTCCTTGTAGGGATGATTTTGAGAAGATTGGCATAAGCAGCTTAGTAACTGCAGGAGTGAGGGACATTCAAGGTGAGGGTTTTCCTGAAGAGTTTGCTGGCTTGGCTGATGCAGTTTTTTTGGATCTACCTCAACCTTGGCTAGCTATTCCTTCAGCTGCAAAAATGTTACGATATGACGGCACTTTATGTTCTTTCTCCCCGTGCATTGAACAAGTACAACGATCATGTGAAACAATGCAATCCAACTTCACCGGTACTTTCCCGATTTTCCTCTTTTATACGTATCTTATTTTTGCTCTCTCTCACACGTAGTAGTTATGCAACTAATGGTAATTTTATTCAAGCACTGACAAAACTCCTTTGTAAATGTTTGTTTATGTGAAAGATATAAGGACTTTTGAGGTACTCCTACGGACATACGAAGTTCGAGAAGGGAAAATGGAAAGCTCTGAGATTGACGGTAATGACGGCTCTAATGGTTCTCTTCCTTGCAAGAGGAGGCAACGTTCAGATGGAGCTAGCGTGGTGAGCTATTCTAATTCTTCTTCTGTTATGGCTAGACCATGTGGTGAAGCTAGAGGTCACACTGGTTATTTGACATTTGCAAGACTTAATTAA
Protein sequence

>MS.gene62083.t1

VLVYUKCWLSILQERYHLIEQLVTVIWQLFMKGMIAUSQUQYLRDRFYRIDSVFLNIQIGUESHLGLKYSTIRAVLFTYULLLLNYGLUFUATGHRFYILQISALLLCIWRLFLVVSFLNLALEVGLULLHLQGQLLLQDMFIRLIFTNKDLDQLGMILRRLAUAAUULQEUGTFKVRVFLKSLLAWLMQFFWIYLNLGULFLQLQKCYDMTALYVLSPRALNKYNDHVKQCNPTSPIUGLLRYSYGHTKFEKGKWKALRLTVMTALMVLFLARGGNVQMELAWUAILILLLLWLDHVVKLEVTLVIUHLQDLI