Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62247.t1 | XP_013460645.1 | 97.7 | 1111 | 25 | 0 | 1 | 1111 | 1 | 1111 | 0.00E+00 | 2186 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62247.t1 | Q8RY22 | 75.0 | 1106 | 266 | 5 | 1 | 1106 | 1 | 1096 | 0.0e+00 | 1676.0 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62247.t1 | A0A072UXY7 | 97.7 | 1111 | 25 | 0 | 1 | 1111 | 1 | 1111 | 0.0e+00 | 2186.0 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene051859 | MS.gene62247 | 0.804027 | 2.63E-49 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62247.t1 | MTR_3g067690 | 97.750 | 1111 | 25 | 0 | 1 | 1111 | 1 | 1111 | 0.0 | 2244 |
| MS.gene62247.t1 | MTR_3g067695 | 86.331 | 1112 | 146 | 3 | 1 | 1111 | 1 | 1107 | 0.0 | 1945 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62247.t1 | AT3G03380 | 74.932 | 1109 | 264 | 6 | 1 | 1107 | 1 | 1097 | 0.0 | 1676 |
| MS.gene62247.t1 | AT3G03380 | 74.031 | 1109 | 241 | 5 | 1 | 1107 | 1 | 1064 | 0.0 | 1662 |
Find 292 sgRNAs with CRISPR-Local
Find 0 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTCTGCAGGTACATGATTT+TGG | 0.110519 | 3.2:+61990617 | MS.gene62247:intron |
| CGCAAAACCTGTCGCCTTAT+TGG | 0.141830 | 3.2:-62006810 | None:intergenic |
| ACTAACTTGTAAGAAATAAT+TGG | 0.166372 | 3.2:-61994784 | None:intergenic |
| ATCAAAGAGTTTAACTCTTT+TGG | 0.214898 | 3.2:+61994012 | MS.gene62247:CDS |
| TGAAGCAAGATTTACATTAT+TGG | 0.215192 | 3.2:+62009112 | MS.gene62247:CDS |
| GGAAATTGATCCACCGTTTC+AGG | 0.227919 | 3.2:+61988857 | MS.gene62247:CDS |
| AAGGAAGGGTCCAAGCTTTA+TGG | 0.235947 | 3.2:+62003115 | MS.gene62247:CDS |
| CTTTCAAAGGCTCGCAGTTT+TGG | 0.236510 | 3.2:+62005064 | MS.gene62247:CDS |
| TTACTGCCAGGTTTCAATTT+TGG | 0.247111 | 3.2:+61991289 | MS.gene62247:intron |
| ATTAAGTGATGTTTGGATTC+AGG | 0.252836 | 3.2:+62005087 | MS.gene62247:CDS |
| TTGTCTTGCTCCCGGCATTC+AGG | 0.255148 | 3.2:-61991949 | None:intergenic |
| TTAATCCAGACACTGGAATT+TGG | 0.255950 | 3.2:+62009154 | MS.gene62247:CDS |
| GATTCCCCTTATTTATCATC+TGG | 0.256203 | 3.2:+62001304 | MS.gene62247:CDS |
| GAGTCTCGTCAAACCCTTTA+TGG | 0.262867 | 3.2:-61992845 | None:intergenic |
| CAAGTATAGTCTCCAGTTTC+AGG | 0.265110 | 3.2:-61993940 | None:intergenic |
| CAGTGGATAGTTGAAATTAA+TGG | 0.273425 | 3.2:+62008595 | MS.gene62247:CDS |
| CTGCCCTGCCAATCTATAAC+TGG | 0.276149 | 3.2:-61991917 | None:intergenic |
| GCTTCTCCTGCCAGTGAAAC+TGG | 0.277699 | 3.2:+61993014 | MS.gene62247:CDS |
| ACCCGGTTCTAAATGTTTAT+AGG | 0.288386 | 3.2:-61993161 | None:intergenic |
| AATATATCACACTCAAGATT+TGG | 0.288823 | 3.2:+62001909 | MS.gene62247:CDS |
| GCACAACTCGTACAATTAAT+TGG | 0.289573 | 3.2:+62007167 | MS.gene62247:CDS |
| CCTTGCGCTGCTTTAAATAT+AGG | 0.294907 | 3.2:+62002893 | MS.gene62247:CDS |
| ATCAAAGGCTGAGCATCTTT+TGG | 0.295228 | 3.2:+62006854 | MS.gene62247:CDS |
| GTGAAACTTATGTTGATAAA+TGG | 0.296158 | 3.2:+61992168 | MS.gene62247:CDS |
| CCTCCATCTTGTATGCTTGA+TGG | 0.296492 | 3.2:+62001850 | MS.gene62247:CDS |
| TTATACCCAGATGATAAATA+AGG | 0.303473 | 3.2:-62001310 | None:intergenic |
| ACCTGGCTTATTGCATAAAT+AGG | 0.315397 | 3.2:-62004932 | None:intergenic |
| CGTGCTGCAGAGTTACTTCC+AGG | 0.315859 | 3.2:+62002209 | MS.gene62247:CDS |
| TTCAGGTTGTGAGGGCATTA+AGG | 0.316252 | 3.2:+61992129 | MS.gene62247:intron |
| AATCCAACACTAGCAGCTTC+AGG | 0.320166 | 3.2:-61990701 | None:intergenic |
| TGTCGTCCCGAGTGTAAATC+TGG | 0.327044 | 3.2:-62001243 | None:intergenic |
| GCTTTCCCAGTTGAAATTCC+TGG | 0.327424 | 3.2:+62001997 | MS.gene62247:CDS |
| TTATGCAATAAGCCAGGTTC+TGG | 0.328632 | 3.2:+62004937 | MS.gene62247:CDS |
| TTTGATTTACAGGCAGCATC+TGG | 0.333651 | 3.2:+61991869 | MS.gene62247:intron |
| ACCTCTCCAGGAATTTCAAC+TGG | 0.334389 | 3.2:-62002003 | None:intergenic |
| TTGGTGTGGTTGTATAGTTC+AGG | 0.335309 | 3.2:+62007186 | MS.gene62247:CDS |
| GGAGATTCTGTTTATCTTGT+GGG | 0.336464 | 3.2:+62002821 | MS.gene62247:CDS |
| TATACCTCGTGGTACTCTTC+AGG | 0.338845 | 3.2:+61992202 | MS.gene62247:CDS |
| GGGACACCTCTTCTCATAAA+TGG | 0.342377 | 3.2:+62004983 | MS.gene62247:CDS |
| AATTATTTCTTACAAGTTAG+TGG | 0.350593 | 3.2:+61994786 | MS.gene62247:CDS |
| GCAAAACCTGTCGCCTTATT+GGG | 0.360483 | 3.2:-62006809 | None:intergenic |
| GGCATTAAGGTTTCTTCAAA+AGG | 0.361475 | 3.2:+61992142 | MS.gene62247:CDS |
| GTACTCTTGCTCGTTTAGAT+AGG | 0.368057 | 3.2:+61991315 | MS.gene62247:CDS |
| ATCATATGATCCATCTGCTT+TGG | 0.368564 | 3.2:+62002163 | MS.gene62247:CDS |
| GCAATAATTAAGAAATTTGC+TGG | 0.369760 | 3.2:+61996079 | MS.gene62247:CDS |
| CTTTGATTTGTTTAGGTGCC+AGG | 0.373312 | 3.2:+61993130 | MS.gene62247:intron |
| TTCTTGTGGGAACAGATGTT+AGG | 0.376049 | 3.2:+62007134 | MS.gene62247:CDS |
| ATATATCACACTCAAGATTT+GGG | 0.378310 | 3.2:+62001910 | MS.gene62247:CDS |
| TTAACAAAAGAATCTATATC+TGG | 0.378431 | 3.2:-62008628 | None:intergenic |
| CGATGCCAAATTCCAGTGTC+TGG | 0.379071 | 3.2:-62009159 | None:intergenic |
| GGACCCACTTGATCCTCCTT+TGG | 0.379627 | 3.2:-61991894 | None:intergenic |
| CATTACTCAATTCCTGAAAC+TGG | 0.386382 | 3.2:+61993928 | MS.gene62247:CDS |
| TATACCCAGATGATAAATAA+GGG | 0.389932 | 3.2:-62001309 | None:intergenic |
| GAAGTTATTGAGCTTGATAC+TGG | 0.392056 | 3.2:+62002953 | MS.gene62247:CDS |
| CATTCAGCGGTACGAGCTCT+TGG | 0.395312 | 3.2:+62007214 | MS.gene62247:CDS |
| TAAGAAAGATTTACCTCTCC+AGG | 0.395372 | 3.2:-62002015 | None:intergenic |
| ACAGTGAAATCGGAAGTTTC+TGG | 0.396526 | 3.2:-61995623 | None:intergenic |
| AATATTGCTAACCTGCTGAT+AGG | 0.398598 | 3.2:-61994829 | None:intergenic |
| ACTTCTAATATTCTCAGAAA+TGG | 0.398619 | 3.2:-62005022 | None:intergenic |
| TCATATGATCCATCTGCTTT+GGG | 0.398966 | 3.2:+62002164 | MS.gene62247:CDS |
| AGGGCAGTTGGCCTGAATGC+CGG | 0.401499 | 3.2:+61991938 | MS.gene62247:CDS |
| CTTACCAGATGATGGGTTAA+TGG | 0.405008 | 3.2:+62001603 | MS.gene62247:CDS |
| TTGTCAAGAAAGACCCAATA+AGG | 0.405263 | 3.2:+62006796 | MS.gene62247:CDS |
| GATGATAAATAAGGGGAATC+AGG | 0.405976 | 3.2:-62001301 | None:intergenic |
| TAAGGACAGTTCACCTCAAC+GGG | 0.406095 | 3.2:+62009070 | MS.gene62247:CDS |
| GGATTAGAAATCAGAGTTGT+TGG | 0.408848 | 3.2:+61990719 | MS.gene62247:CDS |
| AAACAAGACCACAGTGAAAT+CGG | 0.410128 | 3.2:-61995633 | None:intergenic |
| TAGAGCATGGAGAATTTGTT+CGG | 0.410379 | 3.2:+62009046 | MS.gene62247:CDS |
| CATCTGAAGCTTGCCATCAT+TGG | 0.410434 | 3.2:-62006970 | None:intergenic |
| AGCCTATAAACATTTAGAAC+CGG | 0.413448 | 3.2:+61993159 | MS.gene62247:CDS |
| ATTTACATTATTGGCCTACA+TGG | 0.417060 | 3.2:+62009121 | MS.gene62247:CDS |
| GGTTTCCTCGGGTTCATTCA+AGG | 0.417899 | 3.2:-62001560 | None:intergenic |
| GGGGAGGTGCATACCATTCA+TGG | 0.419296 | 3.2:-62001222 | None:intergenic |
| GTCTACTCTTGTGATGTTTG+AGG | 0.422231 | 3.2:+62001684 | MS.gene62247:CDS |
| CTTGTTTATGTGACAGAACC+AGG | 0.423140 | 3.2:+61995649 | MS.gene62247:CDS |
| CAGTTATAGATTGGCAGGGC+AGG | 0.424567 | 3.2:+61991918 | MS.gene62247:CDS |
| AAGATCATATCTGGTGCAAA+TGG | 0.425516 | 3.2:+62004962 | MS.gene62247:CDS |
| GGGCAGTTGGCCTGAATGCC+GGG | 0.425575 | 3.2:+61991939 | MS.gene62247:CDS |
| AGGAAGGGTCCAAGCTTTAT+GGG | 0.425827 | 3.2:+62003116 | MS.gene62247:CDS |
| ACGTTACAGAGCGACCAATA+TGG | 0.425968 | 3.2:+62002931 | MS.gene62247:CDS |
| GTTCTGGACAAGATCATATC+TGG | 0.426731 | 3.2:+62004953 | MS.gene62247:CDS |
| CTTACTGGATCTCTATATAT+CGG | 0.430813 | 3.2:-61989216 | None:intergenic |
| AAGCTCAATAACTTCCATAT+TGG | 0.431622 | 3.2:-62002945 | None:intergenic |
| TCGCCAGTCTTCGGCAGTTA+CGG | 0.434795 | 3.2:-61988886 | None:intergenic |
| CTAACTTGTAAGAAATAATT+GGG | 0.437535 | 3.2:-61994783 | None:intergenic |
| TATACACCATGACCCTCTTC+AGG | 0.438139 | 3.2:-62007244 | None:intergenic |
| ATTCCCCTTATTTATCATCT+GGG | 0.441332 | 3.2:+62001305 | MS.gene62247:CDS |
| CGTGTTAAAGGTTGTTTGGC+TGG | 0.445823 | 3.2:+62006831 | MS.gene62247:CDS |
| TATTGAATTACAAATTGAAA+GGG | 0.447762 | 3.2:+61993982 | MS.gene62247:CDS |
| GTCCCCAGTTATAGATTGGC+AGG | 0.449405 | 3.2:+61991913 | MS.gene62247:CDS |
| CCATCTGCTTTGGGACCTGT+TGG | 0.452644 | 3.2:+62002173 | MS.gene62247:CDS |
| TTTGCGTGTTAAAGGTTGTT+TGG | 0.452828 | 3.2:+62006827 | MS.gene62247:CDS |
| GTATAAAGATGTTGGAAGTC+TGG | 0.456649 | 3.2:+62001327 | MS.gene62247:CDS |
| GTACCACGAGGTATAGAAAC+TGG | 0.457062 | 3.2:-61992194 | None:intergenic |
| CAGTTATTTCTAAGCTATCA+AGG | 0.458352 | 3.2:+61996134 | MS.gene62247:CDS |
| TTCTCATAAATGGTCTCAAA+AGG | 0.462041 | 3.2:+62004993 | MS.gene62247:CDS |
| ACGCCGTAACTGCCGAAGAC+TGG | 0.470258 | 3.2:+61988883 | MS.gene62247:CDS |
| ACGAGAGCATAATTGTGAAC+AGG | 0.472971 | 3.2:-62002140 | None:intergenic |
| TATCAGATTTATCTAAAGCT+TGG | 0.474131 | 3.2:-62006947 | None:intergenic |
| ATGGGGAAGCTTCTCTACTC+AGG | 0.475203 | 3.2:+62003134 | MS.gene62247:CDS |
| AGGAGATTCTGTTTATCTTG+TGG | 0.476173 | 3.2:+62002820 | MS.gene62247:CDS |
| GTTGATGATTTATCAGCTGA+TGG | 0.478944 | 3.2:+62001520 | MS.gene62247:CDS |
| ATCCAACACTAGCAGCTTCA+GGG | 0.479736 | 3.2:-61990700 | None:intergenic |
| AACAAGCATTCCAGTTTCAC+TGG | 0.481103 | 3.2:-61993024 | None:intergenic |
| TTATCCAACATTACTTTCAA+AGG | 0.481576 | 3.2:+62005051 | MS.gene62247:CDS |
| TACTCTTGCTCGTTTAGATA+GGG | 0.483042 | 3.2:+61991316 | MS.gene62247:CDS |
| AGAGCATGGAGAATTTGTTC+GGG | 0.483059 | 3.2:+62009047 | MS.gene62247:CDS |
| ATGGAGAATTTGTTCGGGTA+AGG | 0.483956 | 3.2:+62009052 | MS.gene62247:CDS |
| TGTTTATAGGCTGGACCACC+TGG | 0.485802 | 3.2:-61993148 | None:intergenic |
| GCCCCTGAAGCTGCTAGTGT+TGG | 0.487171 | 3.2:+61990698 | MS.gene62247:CDS |
| GCATTAAGGTTTCTTCAAAA+GGG | 0.488199 | 3.2:+61992143 | MS.gene62247:CDS |
| TGCACTTGTTGTCTTGCTCC+CGG | 0.488223 | 3.2:-61991957 | None:intergenic |
| GAAGATCCATCGGAGCGGTT+AGG | 0.488908 | 3.2:+61988783 | MS.gene62247:CDS |
| AACATAGCTTCAGCAACAAC+AGG | 0.489164 | 3.2:-61989165 | None:intergenic |
| ATTGGCCTACATGGGAATTG+AGG | 0.489182 | 3.2:+62009130 | MS.gene62247:CDS |
| AGTAGCGGAGCTAGCGGAAG+CGG | 0.489426 | 3.2:-61988982 | None:intergenic |
| TAGTCCATTAACCCATCATC+TGG | 0.489512 | 3.2:-62001607 | None:intergenic |
| GGTTCTAAATGTTTATAGGC+TGG | 0.489615 | 3.2:-61993157 | None:intergenic |
| GAATCTCCTCGACGTAATGC+CGG | 0.489720 | 3.2:-62002806 | None:intergenic |
| ATTTCCTAGAGGTTGCTTGA+AGG | 0.491093 | 3.2:-62002856 | None:intergenic |
| CGAGCCTTTGAAAGTAATGT+TGG | 0.492042 | 3.2:-62005055 | None:intergenic |
| GATGTACTTGTCCGCGTCAA+TGG | 0.492181 | 3.2:+61993184 | MS.gene62247:CDS |
| AAAGAATCTATATCTGGAGT+TGG | 0.495811 | 3.2:-62008622 | None:intergenic |
| TGCTTCAATGTTAAGACTCG+TGG | 0.495889 | 3.2:-62009096 | None:intergenic |
| TCATCTGGGTATAAAGATGT+TGG | 0.495936 | 3.2:+62001319 | MS.gene62247:CDS |
| CGAGAGGTTGAACTTCTTGT+GGG | 0.496686 | 3.2:+62007121 | MS.gene62247:CDS |
| TCAGGTGCCTTACCAGATGA+TGG | 0.498142 | 3.2:+62001595 | MS.gene62247:CDS |
| ATACGAAGAACGACGACAGC+AGG | 0.498546 | 3.2:-61988930 | None:intergenic |
| CCAACCTCTTTCCTATCAGC+AGG | 0.498782 | 3.2:+61994818 | MS.gene62247:CDS |
| TCCTATTTATGCAATAAGCC+AGG | 0.500296 | 3.2:+62004931 | MS.gene62247:CDS |
| AGGTTGTTTGGCTGGATCAA+AGG | 0.500857 | 3.2:+62006839 | MS.gene62247:CDS |
| AGCATTCCAGTTTCACTGGC+AGG | 0.501597 | 3.2:-61993020 | None:intergenic |
| CTTGGATTTCTTCCTGAAGA+GGG | 0.502719 | 3.2:+62007232 | MS.gene62247:CDS |
| GGGGAATCAGGCTGAAAAGC+AGG | 0.502798 | 3.2:-62001289 | None:intergenic |
| GGGAGTCCTGTACATAGATA+TGG | 0.505764 | 3.2:+62008559 | MS.gene62247:CDS |
| TCTTGGATTTCTTCCTGAAG+AGG | 0.506242 | 3.2:+62007231 | MS.gene62247:CDS |
| GCTTCCGCTAGCTCCGCTAC+TGG | 0.507281 | 3.2:+61988984 | MS.gene62247:CDS |
| AAGGGGTGCACGAGTACCAT+TGG | 0.507706 | 3.2:+61996153 | MS.gene62247:CDS |
| TCTTGTGGGAACAGATGTTA+GGG | 0.508227 | 3.2:+62007135 | MS.gene62247:CDS |
| AATCGCCATGTTGTTAAGCC+TGG | 0.508229 | 3.2:+61989044 | MS.gene62247:CDS |
| TATTGGTCGCTCTGTAACGT+GGG | 0.509557 | 3.2:-62002928 | None:intergenic |
| CAATTCACAGGTGGTGTCAT+GGG | 0.510151 | 3.2:+62008539 | MS.gene62247:intron |
| ATATTGAATTACAAATTGAA+AGG | 0.510770 | 3.2:+61993981 | MS.gene62247:CDS |
| GATAAATCTGATACCAATGA+TGG | 0.511920 | 3.2:+62006957 | MS.gene62247:CDS |
| TACACTCGGGACGACAGTAC+TGG | 0.513948 | 3.2:+62001250 | MS.gene62247:CDS |
| TTGAGACCATTTATGAGAAG+AGG | 0.513967 | 3.2:-62004989 | None:intergenic |
| CCAATTCACAGGTGGTGTCA+TGG | 0.514670 | 3.2:+62008538 | MS.gene62247:intron |
| GTGGGTCCCCAGTTATAGAT+TGG | 0.515056 | 3.2:+61991909 | MS.gene62247:CDS |
| GGGACGACAGTACTGGCCTC+TGG | 0.515130 | 3.2:+62001257 | MS.gene62247:CDS |
| TGTTCACCAGTCAAAGAACT+TGG | 0.515909 | 3.2:-62001358 | None:intergenic |
| GATTGGCAGGGCAGGGCAGT+TGG | 0.516452 | 3.2:+61991926 | MS.gene62247:CDS |
| ACGAGAGGTTGAACTTCTTG+TGG | 0.517421 | 3.2:+62007120 | MS.gene62247:CDS |
| TTTGACGAGACTCGCCGGCT+TGG | 0.519580 | 3.2:+61992855 | MS.gene62247:CDS |
| AGAAGCTTCCCCATAAAGCT+TGG | 0.519920 | 3.2:-62003125 | None:intergenic |
| TTGGCATCGTAATGTAATCA+AGG | 0.520326 | 3.2:+62009173 | MS.gene62247:CDS |
| ATTTAAAGCAGCGCAAGGAT+TGG | 0.520476 | 3.2:-62002888 | None:intergenic |
| CCCAGTTGAAATTCCTGGAG+AGG | 0.522398 | 3.2:+62002002 | MS.gene62247:CDS |
| ATGTCATGGAAGCATGTGAC+AGG | 0.524095 | 3.2:-62006912 | None:intergenic |
| CAAATTTCTTAATTATTGCA+TGG | 0.526668 | 3.2:-61996075 | None:intergenic |
| TTGATGGCTGCAGTCGGTGT+TGG | 0.526740 | 3.2:+62001186 | MS.gene62247:intron |
| ACAGATGTTAGGGATGGAAA+TGG | 0.527100 | 3.2:+62007145 | MS.gene62247:CDS |
| TCTCACGACAATGGATCTGA+TGG | 0.530429 | 3.2:+62001478 | MS.gene62247:CDS |
| CCTCTCCAGGAATTTCAACT+GGG | 0.531113 | 3.2:-62002002 | None:intergenic |
| AGATCATATCTGGTGCAAAT+GGG | 0.532000 | 3.2:+62004963 | MS.gene62247:CDS |
| TCCGCTCCTAACCGCTCCGA+TGG | 0.532349 | 3.2:-61988789 | None:intergenic |
| AGTTATTTCTAAGCTATCAA+GGG | 0.534850 | 3.2:+61996135 | MS.gene62247:CDS |
| CGAACGACTGAAGCACCAAC+AGG | 0.535120 | 3.2:-62002188 | None:intergenic |
| TCTCTATATATCGGATGCAC+TGG | 0.538307 | 3.2:-61989207 | None:intergenic |
| TGTGTGTGAAGGTAACCATC+AGG | 0.538947 | 3.2:+62001396 | MS.gene62247:CDS |
| TGCCCTGCCAATCTATAACT+GGG | 0.539312 | 3.2:-61991916 | None:intergenic |
| AAGGGTTTGACGAGACTCGC+CGG | 0.539321 | 3.2:+61992850 | MS.gene62247:CDS |
| TACAGACCATATCTATGTAC+AGG | 0.540265 | 3.2:-62008565 | None:intergenic |
| CGACAGCAGGAACGACTTTG+CGG | 0.540830 | 3.2:-61988917 | None:intergenic |
| AGACTCGTGGCTTCCCGTTG+AGG | 0.541171 | 3.2:-62009083 | None:intergenic |
| TTTCTTCCTGAAGAGGGTCA+TGG | 0.542233 | 3.2:+62007238 | MS.gene62247:CDS |
| CATTAACCCATCATCTGGTA+AGG | 0.544338 | 3.2:-62001602 | None:intergenic |
| ATATGATCTTGTCCAGAACC+TGG | 0.546858 | 3.2:-62004949 | None:intergenic |
| AGTTATAGATTGGCAGGGCA+GGG | 0.546894 | 3.2:+61991919 | MS.gene62247:CDS |
| GAAGCCTTCAAGCAACCTCT+AGG | 0.547159 | 3.2:+62002852 | MS.gene62247:CDS |
| GTCGTCCCGAGTGTAAATCT+GGG | 0.547554 | 3.2:-62001242 | None:intergenic |
| TTGACTGGTGAACATGCTCG+TGG | 0.548503 | 3.2:+62001367 | MS.gene62247:CDS |
| CACCTCCCCAGATTTACACT+CGG | 0.550369 | 3.2:+62001236 | MS.gene62247:CDS |
| AGTCGTCCAAGTTCTTTGAC+TGG | 0.550800 | 3.2:+62001352 | MS.gene62247:CDS |
| TCGTGAGATACACACTCTAA+AGG | 0.551548 | 3.2:-62001463 | None:intergenic |
| AGATATATGCTCTTTAAAGC+AGG | 0.551939 | 3.2:+61996043 | MS.gene62247:intron |
| CCTCAGAAGTGAGACAGAGC+AGG | 0.552016 | 3.2:+61992878 | MS.gene62247:CDS |
| GAAAGACCCAATAAGGCGAC+AGG | 0.555127 | 3.2:+62006803 | MS.gene62247:CDS |
| TTCTTAATTATTGCATGGCG+AGG | 0.557029 | 3.2:-61996070 | None:intergenic |
| CTGTTCCAGCTTAAATTCAG+TGG | 0.558079 | 3.2:+62004872 | MS.gene62247:intron |
| ATCTAAACGAGCAAGAGTAC+CGG | 0.558820 | 3.2:-61991312 | None:intergenic |
| TTGAGGTTTAATCCAGACAC+TGG | 0.562805 | 3.2:+62009147 | MS.gene62247:CDS |
| AATTTCCATGGATAAGTCGT+CGG | 0.563097 | 3.2:-61988841 | None:intergenic |
| ACAACATACTTCTTATAGTG+AGG | 0.563470 | 3.2:-61991344 | None:intergenic |
| CTGATGGGATAGTCAAGAAA+CGG | 0.564999 | 3.2:+62001494 | MS.gene62247:CDS |
| AACCATCAGGAGTTGGCTGA+TGG | 0.567235 | 3.2:+62001409 | MS.gene62247:CDS |
| CCAACAGGTCCCAAAGCAGA+TGG | 0.568297 | 3.2:-62002173 | None:intergenic |
| CTAACCTGCTGATAGGAAAG+AGG | 0.568607 | 3.2:-61994822 | None:intergenic |
| TTGATTTACAGGCAGCATCT+GGG | 0.572001 | 3.2:+61991870 | MS.gene62247:intron |
| ATTGAATTACAAATTGAAAG+GGG | 0.572224 | 3.2:+61993983 | MS.gene62247:CDS |
| AGTCAAAGAACTTGGACGAC+TGG | 0.574850 | 3.2:-62001350 | None:intergenic |
| TTTACATTATTGGCCTACAT+GGG | 0.577146 | 3.2:+62009122 | MS.gene62247:CDS |
| CCTGCTGATAGGAAAGAGGT+TGG | 0.578359 | 3.2:-61994818 | None:intergenic |
| CACCATCAGCCAACTCCTGA+TGG | 0.579029 | 3.2:-62001411 | None:intergenic |
| TTTAGAAATTGTATAGCACT+AGG | 0.581734 | 3.2:-61990656 | None:intergenic |
| GGCTGATGGTGTCGCTAGCA+TGG | 0.582214 | 3.2:+62001423 | MS.gene62247:CDS |
| GAAAACCGACGACTTATCCA+TGG | 0.582980 | 3.2:+61988836 | MS.gene62247:CDS |
| CATTAAGGTTTCTTCAAAAG+GGG | 0.583184 | 3.2:+61992144 | MS.gene62247:CDS |
| CCTATATTTAAAGCAGCGCA+AGG | 0.583319 | 3.2:-62002893 | None:intergenic |
| AAACGGTGGATCAATTTCCA+TGG | 0.583469 | 3.2:-61988853 | None:intergenic |
| GATGGGTTAATGGACTATCA+AGG | 0.585317 | 3.2:+62001613 | MS.gene62247:CDS |
| ATATTGGTCGCTCTGTAACG+TGG | 0.586478 | 3.2:-62002929 | None:intergenic |
| AATATTCTCAGAAATGGCAT+AGG | 0.587167 | 3.2:-62005016 | None:intergenic |
| TGCTAACAGATGAACAAGGA+AGG | 0.588657 | 3.2:+62003100 | MS.gene62247:CDS |
| TTAAACCTCAATTCCCATGT+AGG | 0.589505 | 3.2:-62009135 | None:intergenic |
| TCTCACTTCTGAGGCCAAGC+CGG | 0.590055 | 3.2:-61992869 | None:intergenic |
| TCATTCAATGGAAGATCCAT+CGG | 0.590583 | 3.2:+61988773 | None:intergenic |
| AGAGTTGTTGGAAATGATAG+TGG | 0.591242 | 3.2:+61990731 | MS.gene62247:CDS |
| CAGGCAGCATCTGGGACCAA+AGG | 0.592331 | 3.2:+61991878 | MS.gene62247:intron |
| GGGACCAAAGGAGGATCAAG+TGG | 0.593956 | 3.2:+61991890 | MS.gene62247:CDS |
| AGAGCTCGTACCGCTGAATG+TGG | 0.595646 | 3.2:-62007211 | None:intergenic |
| CAGGTGCCTTACCAGATGAT+GGG | 0.597439 | 3.2:+62001596 | MS.gene62247:CDS |
| ATTGGAGTATATAAGCTATG+TGG | 0.598011 | 3.2:+61996171 | MS.gene62247:CDS |
| CTAGCAGCTTCAGGGGCAAG+AGG | 0.601641 | 3.2:-61990692 | None:intergenic |
| ACTCGTACAATTAATTGGTG+TGG | 0.601695 | 3.2:+62007172 | MS.gene62247:CDS |
| TGACAGTTGATCGCCATGAA+TGG | 0.603508 | 3.2:+62001209 | MS.gene62247:CDS |
| GCCTATAAACATTTAGAACC+GGG | 0.604979 | 3.2:+61993160 | MS.gene62247:CDS |
| TGACTGGTGAACATGCTCGT+GGG | 0.605031 | 3.2:+62001368 | MS.gene62247:CDS |
| CAGAAGATCATCAATTCGTG+AGG | 0.607507 | 3.2:+62004903 | MS.gene62247:CDS |
| GTAAGGACAGTTCACCTCAA+CGG | 0.607880 | 3.2:+62009069 | MS.gene62247:CDS |
| GACTGGTGAACATGCTCGTG+GGG | 0.610727 | 3.2:+62001369 | MS.gene62247:CDS |
| GTTATTTCTAAGCTATCAAG+GGG | 0.612565 | 3.2:+61996136 | MS.gene62247:CDS |
| CAAGAGCTCACCCTTTCCAA+AGG | 0.613833 | 3.2:-61991995 | None:intergenic |
| TAACTGATATTAGTTCCTCA+AGG | 0.615980 | 3.2:-61996117 | None:intergenic |
| ATCAACTACAAAACCAGTAG+CGG | 0.617971 | 3.2:-61988997 | None:intergenic |
| AAAAGATAGCAACACATCAG+AGG | 0.620185 | 3.2:-62001971 | None:intergenic |
| AGTGACTGATGCATTTGCTG+TGG | 0.620386 | 3.2:-62001647 | None:intergenic |
| GCAGCATCTGGGACCAAAGG+AGG | 0.620601 | 3.2:+61991881 | MS.gene62247:CDS |
| GAATTACAAATTGAAAGGGG+TGG | 0.622224 | 3.2:+61993986 | MS.gene62247:CDS |
| TGTGGATCGTCATCGAAGGA+AGG | 0.622458 | 3.2:+61996189 | MS.gene62247:CDS |
| CTCACGACAATGGATCTGAT+GGG | 0.623764 | 3.2:+62001479 | MS.gene62247:CDS |
| ACATAGCTTATATACTCCAA+TGG | 0.625265 | 3.2:-61996169 | None:intergenic |
| ACACCATCAAGCATACAAGA+TGG | 0.625568 | 3.2:-62001853 | None:intergenic |
| GAGTGTGTATCTCACGACAA+TGG | 0.625621 | 3.2:+62001469 | MS.gene62247:CDS |
| TCCATCGGAGCGGTTAGGAG+CGG | 0.625998 | 3.2:+61988788 | MS.gene62247:CDS |
| AGAAGATCATCAATTCGTGA+GGG | 0.627156 | 3.2:+62004904 | MS.gene62247:CDS |
| TGTTGGCAGGAACTAGAGCA+TGG | 0.627193 | 3.2:+62009033 | MS.gene62247:intron |
| CCTGCTCTGTCTCACTTCTG+AGG | 0.628127 | 3.2:-61992878 | None:intergenic |
| TCCAACACTAGCAGCTTCAG+GGG | 0.629636 | 3.2:-61990699 | None:intergenic |
| TGATTTGTTTAGGTGCCAGG+TGG | 0.631499 | 3.2:+61993133 | MS.gene62247:intron |
| GAGCATAATTGTGAACAGGA+TGG | 0.632022 | 3.2:-62002136 | None:intergenic |
| TGAAGGTAACCATCAGGAGT+TGG | 0.632098 | 3.2:+62001402 | MS.gene62247:CDS |
| AAGATCATCAATTCGTGAGG+GGG | 0.632531 | 3.2:+62004906 | MS.gene62247:CDS |
| AACTTACTTCACCATTGACG+CGG | 0.632906 | 3.2:-61993195 | None:intergenic |
| GTGGGAACAGATGTTAGGGA+TGG | 0.634758 | 3.2:+62007139 | MS.gene62247:CDS |
| ACCTCCCCAGATTTACACTC+GGG | 0.636427 | 3.2:+62001237 | MS.gene62247:CDS |
| TCGGAGCGGTTAGGAGCGGA+CGG | 0.637278 | 3.2:+61988792 | MS.gene62247:CDS |
| TGAAACTGGAATGCTTGTTG+TGG | 0.638801 | 3.2:+61993028 | MS.gene62247:CDS |
| TCCCGAGTGTAAATCTGGGG+AGG | 0.639469 | 3.2:-62001238 | None:intergenic |
| ATGGTCTGTATGCTCTTCAG+TGG | 0.643705 | 3.2:+62008578 | MS.gene62247:CDS |
| GCTATGTGGATCGTCATCGA+AGG | 0.645072 | 3.2:+61996185 | MS.gene62247:CDS |
| TGGAAATGATAGTGGTGAGA+AGG | 0.645560 | 3.2:+61990739 | MS.gene62247:CDS |
| GCTTACCAGGCTTAACAACA+TGG | 0.646259 | 3.2:-61989049 | None:intergenic |
| TCCCCAGTTATAGATTGGCA+GGG | 0.646955 | 3.2:+61991914 | MS.gene62247:CDS |
| ATACCCAGATGATAAATAAG+GGG | 0.647293 | 3.2:-62001308 | None:intergenic |
| GGAAGGGTCCAAGCTTTATG+GGG | 0.647869 | 3.2:+62003117 | MS.gene62247:CDS |
| GCCCTGCCAATCTATAACTG+GGG | 0.648189 | 3.2:-61991915 | None:intergenic |
| GTCATGGTGTATACGTGGCA+AGG | 0.651209 | 3.2:+62007254 | MS.gene62247:CDS |
| AAAACCAGTAGCGGAGCTAG+CGG | 0.653341 | 3.2:-61988988 | None:intergenic |
| GCTAACAGATGAACAAGGAA+GGG | 0.658389 | 3.2:+62003101 | MS.gene62247:CDS |
| AATGCTTGTTGTGGAATCTG+TGG | 0.658806 | 3.2:+61993037 | MS.gene62247:CDS |
| ATTGGTCGCTCTGTAACGTG+GGG | 0.662916 | 3.2:-62002927 | None:intergenic |
| GGTAACAACTGATTTCCTAG+AGG | 0.669880 | 3.2:-62002867 | None:intergenic |
| GAAGATCATCAATTCGTGAG+GGG | 0.671912 | 3.2:+62004905 | MS.gene62247:CDS |
| AGTTCAGGATCCACATTCAG+CGG | 0.672282 | 3.2:+62007201 | MS.gene62247:CDS |
| TTGTTTATGTGACAGAACCA+GGG | 0.674020 | 3.2:+61995650 | MS.gene62247:CDS |
| TATGTCCTTGAATGAACCCG+AGG | 0.680888 | 3.2:+62001555 | MS.gene62247:CDS |
| CCATCAAGCATACAAGATGG+AGG | 0.681025 | 3.2:-62001850 | None:intergenic |
| TCGTCCCGAGTGTAAATCTG+GGG | 0.682855 | 3.2:-62001241 | None:intergenic |
| TGCTCATTCATACAGAACTG+CGG | 0.688452 | 3.2:-62009203 | None:intergenic |
| AAGCAGGCTTAGCAATCCAG+AGG | 0.690606 | 3.2:-62001273 | None:intergenic |
| GGACCAAAGGAGGATCAAGT+GGG | 0.691475 | 3.2:+61991891 | MS.gene62247:CDS |
| ACGCGGACAAGTACATCACC+CGG | 0.692761 | 3.2:-61993178 | None:intergenic |
| TCAGAGCCGGCATTACGTCG+AGG | 0.694756 | 3.2:+62002800 | MS.gene62247:intron |
| TGAAGAAATATCTTGCCTTG+AGG | 0.697385 | 3.2:+61996102 | MS.gene62247:CDS |
| CGTGGGGAAGATGTGTGTGA+AGG | 0.699328 | 3.2:+62001385 | MS.gene62247:CDS |
| AGAGGGTCATGGTGTATACG+TGG | 0.702462 | 3.2:+62007249 | MS.gene62247:CDS |
| TTTGTAGTTGATAAACGACG+TGG | 0.710705 | 3.2:+61989008 | MS.gene62247:CDS |
| AGAAACTTCCGATTTCACTG+TGG | 0.714966 | 3.2:+61995625 | MS.gene62247:CDS |
| ATGCCAGTTTCTATACCTCG+TGG | 0.733202 | 3.2:+61992191 | MS.gene62247:CDS |
| CAATGGAAGATCCATCGGAG+CGG | 0.747860 | 3.2:+61988778 | None:intergenic |
| GGTGTGCTAACAGATGAACA+AGG | 0.776902 | 3.2:+62003096 | MS.gene62247:CDS |
| CAAACCTGAAGAGTACCACG+AGG | 0.796613 | 3.2:-61992206 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3.2 | gene | 61988780 | 62009218 | 61988780 | ID=MS.gene62247 |
| chr3.2 | mRNA | 61988780 | 62009218 | 61988780 | ID=MS.gene62247.t1;Parent=MS.gene62247 |
| chr3.2 | exon | 61988780 | 61989065 | 61988780 | ID=MS.gene62247.t1.exon1;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61988780 | 61989065 | 61988780 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61989163 | 61989233 | 61989163 | ID=MS.gene62247.t1.exon2;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61989163 | 61989233 | 61989163 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61990626 | 61990760 | 61990626 | ID=MS.gene62247.t1.exon3;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61990626 | 61990760 | 61990626 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61991299 | 61991357 | 61991299 | ID=MS.gene62247.t1.exon4;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61991299 | 61991357 | 61991299 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61991457 | 61991493 | 61991457 | ID=MS.gene62247.t1.exon5;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61991457 | 61991493 | 61991457 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61991881 | 61992006 | 61991881 | ID=MS.gene62247.t1.exon6;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61991881 | 61992006 | 61991881 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61992134 | 61992223 | 61992134 | ID=MS.gene62247.t1.exon7;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61992134 | 61992223 | 61992134 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61992834 | 61992899 | 61992834 | ID=MS.gene62247.t1.exon8;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61992834 | 61992899 | 61992834 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61993002 | 61993058 | 61993002 | ID=MS.gene62247.t1.exon9;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61993002 | 61993058 | 61993002 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61993145 | 61993210 | 61993145 | ID=MS.gene62247.t1.exon10;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61993145 | 61993210 | 61993145 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61993926 | 61994033 | 61993926 | ID=MS.gene62247.t1.exon11;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61993926 | 61994033 | 61993926 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61994759 | 61994839 | 61994759 | ID=MS.gene62247.t1.exon12;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61994759 | 61994839 | 61994759 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61995622 | 61995671 | 61995622 | ID=MS.gene62247.t1.exon13;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61995622 | 61995671 | 61995622 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 61996045 | 61996210 | 61996045 | ID=MS.gene62247.t1.exon14;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 61996045 | 61996210 | 61996045 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62001199 | 62001705 | 62001199 | ID=MS.gene62247.t1.exon15;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62001199 | 62001705 | 62001199 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62001841 | 62002023 | 62001841 | ID=MS.gene62247.t1.exon16;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62001841 | 62002023 | 62001841 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62002125 | 62002230 | 62002125 | ID=MS.gene62247.t1.exon17;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62002125 | 62002230 | 62002125 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62002804 | 62002974 | 62002804 | ID=MS.gene62247.t1.exon18;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62002804 | 62002974 | 62002804 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62003076 | 62003155 | 62003076 | ID=MS.gene62247.t1.exon19;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62003076 | 62003155 | 62003076 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62004881 | 62005108 | 62004881 | ID=MS.gene62247.t1.exon20;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62004881 | 62005108 | 62004881 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62006792 | 62007007 | 62006792 | ID=MS.gene62247.t1.exon21;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62006792 | 62007007 | 62006792 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62007118 | 62007275 | 62007118 | ID=MS.gene62247.t1.exon22;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62007118 | 62007275 | 62007118 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62008549 | 62008660 | 62008549 | ID=MS.gene62247.t1.exon23;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62008549 | 62008660 | 62008549 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| chr3.2 | exon | 62009042 | 62009218 | 62009042 | ID=MS.gene62247.t1.exon24;Parent=MS.gene62247.t1 |
| chr3.2 | CDS | 62009042 | 62009218 | 62009042 | ID=cds.MS.gene62247.t1;Parent=MS.gene62247.t1 |
| Gene Sequence |
| Protein sequence |
