Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
Nr:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62436.t1 | AES79080.2 | 70.8 | 236 | 28 | 4 | 1 | 217 | 166 | 379 | 6.20E-76 | 294.3 |
Swissprot:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62436.t1 | Q9C7R6 | 67.9 | 109 | 30 | 2 | 166 | 274 | 621 | 724 | 2.0e-30 | 134.4 |
Trembl:
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62436.t1 | G7L051 | 70.8 | 236 | 28 | 4 | 1 | 217 | 166 | 379 | 4.5e-76 | 294.3 |
TFs/TRs:
| Gene ID | Type | Classification |
|---|
Protein Kinases:
| Gene ID | Type | Classification |
|---|
Network:
Co-expression Network:
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| MS.gene049972 | MS.gene62436 | 0.841347 | 5.02E-58 | -1.69E-46 |
PPI:
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62436.t1 | MTR_7g055620 | 71.610 | 236 | 26 | 5 | 1 | 217 | 166 | 379 | 1.47e-107 | 317 |
| MS.gene62436.t1 | MTR_2g018010 | 92.727 | 110 | 8 | 0 | 166 | 275 | 609 | 718 | 7.91e-62 | 207 |
| MS.gene62436.t1 | MTR_8g096950 | 84.685 | 111 | 17 | 0 | 1 | 111 | 1 | 111 | 1.30e-61 | 196 |
| MS.gene62436.t1 | MTR_3g109972 | 90.625 | 96 | 9 | 0 | 168 | 263 | 1 | 96 | 1.48e-54 | 172 |
| MS.gene62436.t1 | MTR_3g110015 | 92.941 | 85 | 5 | 1 | 1 | 84 | 1 | 85 | 4.86e-49 | 157 |
| MS.gene62436.t1 | MTR_3g109978 | 92.941 | 85 | 5 | 1 | 1 | 84 | 92 | 176 | 1.20e-48 | 160 |
| MS.gene62436.t1 | MTR_5g010620 | 60.360 | 111 | 31 | 2 | 1 | 111 | 1 | 98 | 3.31e-32 | 120 |
| MS.gene62436.t1 | MTR_5g010620 | 60.360 | 111 | 31 | 2 | 1 | 111 | 33 | 130 | 8.56e-32 | 119 |
| MS.gene62436.t1 | MTR_5g096820 | 88.679 | 53 | 3 | 1 | 112 | 164 | 137 | 186 | 3.85e-24 | 102 |
| MS.gene62436.t1 | MTR_5g096820 | 88.679 | 53 | 3 | 1 | 112 | 164 | 137 | 186 | 4.17e-24 | 102 |
| MS.gene62436.t1 | MTR_1g052515 | 57.143 | 56 | 21 | 1 | 112 | 167 | 125 | 177 | 2.28e-12 | 67.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| MS.gene62436.t1 | AT1G29340 | 67.890 | 109 | 30 | 2 | 166 | 274 | 621 | 724 | 1.64e-38 | 144 |
| MS.gene62436.t1 | AT4G20330 | 57.658 | 111 | 47 | 0 | 1 | 111 | 1 | 111 | 2.49e-30 | 115 |
| MS.gene62436.t1 | AT4G21010 | 52.252 | 111 | 49 | 2 | 1 | 111 | 1 | 107 | 3.56e-21 | 90.9 |
| MS.gene62436.t1 | AT1G55740 | 57.143 | 56 | 21 | 1 | 112 | 167 | 130 | 182 | 2.62e-14 | 73.6 |
Find 71 sgRNAs with CRISPR-Local
Find 161 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGGACTCATTTGGTGTTTAT+TGG | 0.178805 | 8.2:+14341467 | MS.gene62436:CDS |
| GGACTCATTTGGTGTTTATT+GGG | 0.187135 | 8.2:+14341468 | MS.gene62436:CDS |
| AGATTTCAGGGTTGTTCTTC+AGG | 0.236845 | 8.2:+14341221 | MS.gene62436:intron |
| TCTCTACATTATGGTGTATT+AGG | 0.247651 | 8.2:+14342032 | MS.gene62436:CDS |
| GCAGCCACCACCGGAGTATT+AGG | 0.268237 | 8.2:-14340282 | None:intergenic |
| AGAATTGCGTCGAGCAAAAT+TGG | 0.283843 | 8.2:+14340249 | MS.gene62436:CDS |
| CTTCAAACCCTACTATTTAC+CGG | 0.331149 | 8.2:+14341945 | MS.gene62436:CDS |
| CGCTCCATCTGAGCACCAAC+GGG | 0.368841 | 8.2:-14340399 | None:intergenic |
| CATTTGGTGTTTATTGGGGC+TGG | 0.372723 | 8.2:+14341473 | MS.gene62436:CDS |
| CATACTTCATTTATTTGCTC+TGG | 0.378031 | 8.2:-14340937 | None:intergenic |
| GCTTTGTCCCGGTAAATAGT+AGG | 0.385439 | 8.2:-14341953 | None:intergenic |
| TGCAATTGAAAGGGCGGTTA+AGG | 0.401505 | 8.2:+14341902 | MS.gene62436:CDS |
| GCATTTGTTATAACTTCATA+AGG | 0.409589 | 8.2:-14341503 | None:intergenic |
| GAAAATGCATCTCTACATTA+TGG | 0.412312 | 8.2:+14342023 | MS.gene62436:CDS |
| CTAGCAATTCAGCTCAAACT+AGG | 0.421052 | 8.2:+14342072 | MS.gene62436:CDS |
| GGAATTTGATGGGACTCATT+TGG | 0.432327 | 8.2:+14341457 | MS.gene62436:CDS |
| ATGCGTTGTGGAACACCAAC+GGG | 0.433508 | 8.2:+14341825 | MS.gene62436:CDS |
| GTTAAGGCACCAACTATTGC+CGG | 0.433899 | 8.2:+14341918 | MS.gene62436:CDS |
| GCTGCAAATGCTTCATCAAA+TGG | 0.435679 | 8.2:+14340300 | MS.gene62436:CDS |
| GATTTCAGGGTTGTTCTTCA+GGG | 0.445461 | 8.2:+14341222 | MS.gene62436:intron |
| CCTGATGTGGAGGAATTTGA+TGG | 0.448561 | 8.2:+14341446 | MS.gene62436:CDS |
| TAGTAGGGTTTGAAGTAATC+CGG | 0.457922 | 8.2:-14341937 | None:intergenic |
| TTGTGGCGGAAAAGCTAGAT+AGG | 0.459328 | 8.2:+14340187 | MS.gene62436:CDS |
| CAGCATTGCTTGAGTTATGC+CGG | 0.474845 | 8.2:+14341865 | MS.gene62436:CDS |
| CCATCAAATTCCTCCACATC+AGG | 0.481977 | 8.2:-14341446 | None:intergenic |
| AGGGATTCAAGCTTTGCTGC+AGG | 0.485529 | 8.2:+14342092 | MS.gene62436:CDS |
| TTTGTTCAGGACTATTGAGT+CGG | 0.492898 | 8.2:+14341732 | MS.gene62436:intron |
| CTTTGTCCCGGTAAATAGTA+GGG | 0.497495 | 8.2:-14341952 | None:intergenic |
| TTCAAACCCTACTATTTACC+GGG | 0.497622 | 8.2:+14341946 | MS.gene62436:CDS |
| TGAAGTAATCCGGCAATAGT+TGG | 0.499205 | 8.2:-14341927 | None:intergenic |
| TTGTTCAGGACTATTGAGTC+GGG | 0.501991 | 8.2:+14341733 | MS.gene62436:intron |
| ATTGAGATTTGTGTTGAAAG+TGG | 0.506532 | 8.2:+14341261 | MS.gene62436:CDS |
| GAAGCACATTTGAATGTTTG+TGG | 0.508080 | 8.2:+14340170 | None:intergenic |
| GACTCATTTGGTGTTTATTG+GGG | 0.511611 | 8.2:+14341469 | MS.gene62436:CDS |
| GAGGTTCAGCTGCAATTGAA+AGG | 0.514449 | 8.2:+14341892 | MS.gene62436:CDS |
| GGATTCAAGCTTTGCTGCAG+GGG | 0.516848 | 8.2:+14342094 | MS.gene62436:CDS |
| GGGATTCAAGCTTTGCTGCA+GGG | 0.523093 | 8.2:+14342093 | MS.gene62436:CDS |
| TTGTGGAACACCAACGGGTA+AGG | 0.525498 | 8.2:+14341830 | MS.gene62436:CDS |
| GAAGCATTTGCAGCCACCAC+CGG | 0.530483 | 8.2:-14340291 | None:intergenic |
| ACGTCTAGATCGCTTTGTCC+CGG | 0.534083 | 8.2:-14341964 | None:intergenic |
| TAGCAATTCAGCTCAAACTA+GGG | 0.535704 | 8.2:+14342073 | MS.gene62436:CDS |
| GATTGTAGGTTGTCCTGATG+TGG | 0.550970 | 8.2:+14341433 | MS.gene62436:intron |
| CATTATGGTGTATTAGGTGT+AGG | 0.552166 | 8.2:+14342038 | MS.gene62436:CDS |
| TGTTATTGATCTATTGCTTG+AGG | 0.558507 | 8.2:+14340422 | MS.gene62436:CDS |
| ACGCTCCATCTGAGCACCAA+CGG | 0.570793 | 8.2:-14340400 | None:intergenic |
| GTTCAGAAGACAAGAAGCAT+AGG | 0.574424 | 8.2:-14342731 | None:intergenic |
| ACTGCATTCTCCTTACCCGT+TGG | 0.580022 | 8.2:-14341840 | None:intergenic |
| AAAACCTAATACTCCGGTGG+TGG | 0.582600 | 8.2:+14340278 | MS.gene62436:CDS |
| TGTCAAACTCACTTGATCAA+AGG | 0.583358 | 8.2:-14341530 | None:intergenic |
| AGGTTCAGCTGCAATTGAAA+GGG | 0.584279 | 8.2:+14341893 | MS.gene62436:CDS |
| TAGCAGAAAACCTAATACTC+CGG | 0.589094 | 8.2:+14340272 | MS.gene62436:CDS |
| ATTTCAGGGTTGTTCTTCAG+GGG | 0.591206 | 8.2:+14341223 | MS.gene62436:intron |
| GATGCGTTGTGGAACACCAA+CGG | 0.591442 | 8.2:+14341824 | MS.gene62436:CDS |
| CTTGAGTTATGCCGGAGTGG+AGG | 0.594920 | 8.2:+14341873 | MS.gene62436:CDS |
| AAGTATGCTATGTTGATATG+AGG | 0.595797 | 8.2:+14340953 | MS.gene62436:CDS |
| ATTAGGTGTAGGCTATGCAT+TGG | 0.596170 | 8.2:+14342049 | MS.gene62436:CDS |
| TTCAGAAGACAAGAAGCATA+GGG | 0.597818 | 8.2:-14342730 | None:intergenic |
| TTCAGCTGCAATTGAAAGGG+CGG | 0.609680 | 8.2:+14341896 | MS.gene62436:CDS |
| CTATATTACAGGTACAGAGA+TGG | 0.627725 | 8.2:-14342135 | None:intergenic |
| ACAGGTACAGAGATGGACAT+TGG | 0.635671 | 8.2:-14342128 | None:intergenic |
| TTGCTTGAGTTATGCCGGAG+TGG | 0.637884 | 8.2:+14341870 | MS.gene62436:CDS |
| CTGATGTGGAGGAATTTGAT+GGG | 0.644921 | 8.2:+14341447 | MS.gene62436:CDS |
| AAACACTATAGCAAGTGAAG+CGG | 0.655689 | 8.2:-14341991 | None:intergenic |
| GCACATTTGAATGTTTGTGG+CGG | 0.660752 | 8.2:+14340173 | None:intergenic |
| TGTAGGTTGTCCTGATGTGG+AGG | 0.666082 | 8.2:+14341436 | MS.gene62436:intron |
| AATTCTCAAATGATACTGAG+AGG | 0.667400 | 8.2:+14340346 | MS.gene62436:CDS |
| TTGCAGCTGAACCTCCACTC+CGG | 0.668193 | 8.2:-14341884 | None:intergenic |
| CTCCATCTGAGCACCAACGG+GGG | 0.668583 | 8.2:-14340397 | None:intergenic |
| TTGATAGGAATGATGCGTTG+TGG | 0.684688 | 8.2:+14341813 | MS.gene62436:intron |
| GCTCCATCTGAGCACCAACG+GGG | 0.691668 | 8.2:-14340398 | None:intergenic |
| CAGAAAACCTAATACTCCGG+TGG | 0.697637 | 8.2:+14340275 | MS.gene62436:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTCTTCTACATTATTTTAA+TGG | + | chr8.2:14341154-14341173 | MS.gene62436:intron | 15.0% |
| !! | CAAATTGAAACTAATATGTT+TGG | + | chr8.2:14340658-14340677 | MS.gene62436:intron | 20.0% |
| !! | CAACATTGTTTATGAATTTA+TGG | - | chr8.2:14342674-14342693 | None:intergenic | 20.0% |
| !! | TGAACAAAGAAAAAAATTGA+TGG | - | chr8.2:14341720-14341739 | None:intergenic | 20.0% |
| !! | TTTACATTCAAATGAAATGA+TGG | - | chr8.2:14342555-14342574 | None:intergenic | 20.0% |
| !!! | ATCAATTTTTTTCTTTGTTC+AGG | + | chr8.2:14341719-14341738 | MS.gene62436:intron | 20.0% |
| !!! | GTTATGTTCACAATTTTTAT+TGG | + | chr8.2:14342188-14342207 | MS.gene62436:intron | 20.0% |
| !!! | TATGCACTATTCTTTTTTTT+AGG | + | chr8.2:14342697-14342716 | MS.gene62436:intron | 20.0% |
| !!! | TATTAGTTTCAATTTGCAAT+TGG | - | chr8.2:14340654-14340673 | None:intergenic | 20.0% |
| !!! | TTTTAATTATTGTTAGTGAC+TGG | + | chr8.2:14340487-14340506 | MS.gene62436:intron | 20.0% |
| ! | AAAGTTTATCACTGCAAATT+AGG | - | chr8.2:14341664-14341683 | None:intergenic | 25.0% |
| ! | AATGGAAGAAATTCAAAAAC+TGG | + | chr8.2:14340318-14340337 | MS.gene62436:CDS | 25.0% |
| ! | AGAAAATAAAAAATGCAAGC+AGG | - | chr8.2:14342582-14342601 | None:intergenic | 25.0% |
| ! | ATCAATTGTGAACATTAAGT+GGG | - | chr8.2:14342503-14342522 | None:intergenic | 25.0% |
| ! | CTCTTACAAGATAATCTTTA+CGG | + | chr8.2:14341040-14341059 | MS.gene62436:intron | 25.0% |
| ! | GTATTATACCACTATATTAC+AGG | - | chr8.2:14342149-14342168 | None:intergenic | 25.0% |
| ! | TCTTACAAGATAATCTTTAC+GGG | + | chr8.2:14341041-14341060 | MS.gene62436:intron | 25.0% |
| !! | AATTTCTCAATATGTTTTGC+TGG | - | chr8.2:14340763-14340782 | None:intergenic | 25.0% |
| !! | ATGAAGAAGTTATTTGCTAA+AGG | - | chr8.2:14341101-14341120 | None:intergenic | 25.0% |
| !! | ATTTCTCAATATGTTTTGCT+GGG | - | chr8.2:14340762-14340781 | None:intergenic | 25.0% |
| !! | TCGTTAAAACCATATTGATT+TGG | + | chr8.2:14340877-14340896 | MS.gene62436:intron | 25.0% |
| !! | TTCAGAAGAGTATATTGAAA+AGG | - | chr8.2:14341568-14341587 | None:intergenic | 25.0% |
| !!! | ACATTATTTTAATGGCAAGA+TGG | + | chr8.2:14341162-14341181 | MS.gene62436:intron | 25.0% |
| !!! | ATCTTTTTGTTTGCTTTGTT+TGG | + | chr8.2:14341789-14341808 | MS.gene62436:intron | 25.0% |
| !!! | ATTTTCTTGCATTGATTAGA+TGG | + | chr8.2:14342595-14342614 | MS.gene62436:intron | 25.0% |
| !!! | GCATTTGTTATAACTTCATA+AGG | - | chr8.2:14341506-14341525 | None:intergenic | 25.0% |
| AACAACATTCATGTATCTCT+TGG | - | chr8.2:14342290-14342309 | None:intergenic | 30.0% | |
| AACCAAATATGCACAAGAAA+TGG | - | chr8.2:14342393-14342412 | None:intergenic | 30.0% | |
| AACGAATCAATTCCTAATTG+TGG | - | chr8.2:14340862-14340881 | None:intergenic | 30.0% | |
| AAGTATGCTATGTTGATATG+AGG | + | chr8.2:14340953-14340972 | MS.gene62436:CDS | 30.0% | |
| AATTCTCAAATGATACTGAG+AGG | + | chr8.2:14340346-14340365 | MS.gene62436:CDS | 30.0% | |
| ACCAAAACACCAAATCAATA+TGG | - | chr8.2:14340889-14340908 | None:intergenic | 30.0% | |
| ATGAATGTTGTTGACAAGTT+AGG | + | chr8.2:14342298-14342317 | MS.gene62436:intron | 30.0% | |
| ATTGAGATTTGTGTTGAAAG+TGG | + | chr8.2:14341261-14341280 | MS.gene62436:CDS | 30.0% | |
| CATACTTCATTTATTTGCTC+TGG | - | chr8.2:14340940-14340959 | None:intergenic | 30.0% | |
| CATCAATTGTGAACATTAAG+TGG | - | chr8.2:14342504-14342523 | None:intergenic | 30.0% | |
| CCACTGCATATTAATCTTAA+TGG | + | chr8.2:14342441-14342460 | MS.gene62436:intron | 30.0% | |
| CCATTAAGATTAATATGCAG+TGG | - | chr8.2:14342444-14342463 | None:intergenic | 30.0% | |
| GAAAATGCATCTCTACATTA+TGG | + | chr8.2:14342023-14342042 | MS.gene62436:CDS | 30.0% | |
| GAAGAGAAAACATATGGTAT+TGG | - | chr8.2:14342268-14342287 | None:intergenic | 30.0% | |
| TAATTATTGTTAGTGACTGG+CGG | + | chr8.2:14340490-14340509 | MS.gene62436:intron | 30.0% | |
| TCTCTACATTATGGTGTATT+AGG | + | chr8.2:14342032-14342051 | MS.gene62436:CDS | 30.0% | |
| TGTGTGTTATGTATGATTGT+AGG | + | chr8.2:14341419-14341438 | MS.gene62436:intron | 30.0% | |
| TGTTATTGATCTATTGCTTG+AGG | + | chr8.2:14340422-14340441 | MS.gene62436:CDS | 30.0% | |
| TTAAGATTAATATGCAGTGG+TGG | - | chr8.2:14342441-14342460 | None:intergenic | 30.0% | |
| ! | CACAATTGATGATTACAATG+AGG | + | chr8.2:14342513-14342532 | MS.gene62436:intron | 30.0% |
| ! | GGTGACTTTTAAGCTATAAT+GGG | - | chr8.2:14340633-14340652 | None:intergenic | 30.0% |
| ! | TACATAACACACATTAGTCT+CGG | - | chr8.2:14341412-14341431 | None:intergenic | 30.0% |
| ! | TCTATTGCTTGAGGTAATTT+TGG | + | chr8.2:14340431-14340450 | MS.gene62436:intron | 30.0% |
| ! | TGGTGACTTTTAAGCTATAA+TGG | - | chr8.2:14340634-14340653 | None:intergenic | 30.0% |
| !! | AAACTAATATGTTTGGCTTG+TGG | + | chr8.2:14340665-14340684 | MS.gene62436:intron | 30.0% |
| !! | TTTGCTTTGTTTGGATTGAT+AGG | + | chr8.2:14341798-14341817 | MS.gene62436:intron | 30.0% |
| !!! | ACCATATTGATTTGGTGTTT+TGG | + | chr8.2:14340885-14340904 | MS.gene62436:intron | 30.0% |
| AAACACTATAGCAAGTGAAG+CGG | - | chr8.2:14341994-14342013 | None:intergenic | 35.0% | |
| AAGTCCTAATACTGCACTAA+TGG | - | chr8.2:14341613-14341632 | None:intergenic | 35.0% | |
| ACCAATGAAAGTCCACAATT+AGG | + | chr8.2:14340847-14340866 | MS.gene62436:intron | 35.0% | |
| CATTATGGTGTATTAGGTGT+AGG | + | chr8.2:14342038-14342057 | MS.gene62436:CDS | 35.0% | |
| CTATATTACAGGTACAGAGA+TGG | - | chr8.2:14342138-14342157 | None:intergenic | 35.0% | |
| CTCTTGGAAGAGAAAACATA+TGG | - | chr8.2:14342274-14342293 | None:intergenic | 35.0% | |
| CTTAATGGTCCCAATTGAAA+GGG | + | chr8.2:14342456-14342475 | MS.gene62436:intron | 35.0% | |
| CTTCAAACCCTACTATTTAC+CGG | + | chr8.2:14341945-14341964 | MS.gene62436:CDS | 35.0% | |
| GACCATTTCTTGTGCATATT+TGG | + | chr8.2:14342388-14342407 | MS.gene62436:intron | 35.0% | |
| TAACCTCAAACTTAACAGCT+AGG | - | chr8.2:14340605-14340624 | None:intergenic | 35.0% | |
| TAGCAATTCAGCTCAAACTA+GGG | + | chr8.2:14342073-14342092 | MS.gene62436:CDS | 35.0% | |
| TAGCAGAAAACCTAATACTC+CGG | + | chr8.2:14340272-14340291 | MS.gene62436:CDS | 35.0% | |
| TAGGGAAAACCCTTTCAATT+GGG | - | chr8.2:14342468-14342487 | None:intergenic | 35.0% | |
| TCCTAATTGTGGACTTTCAT+TGG | - | chr8.2:14340851-14340870 | None:intergenic | 35.0% | |
| TCTCTGTACCTGTAATATAG+TGG | + | chr8.2:14342138-14342157 | MS.gene62436:intron | 35.0% | |
| TCTTAATGGTCCCAATTGAA+AGG | + | chr8.2:14342455-14342474 | MS.gene62436:intron | 35.0% | |
| TGAAGCTTCAACAAAATCAC+AGG | - | chr8.2:14340692-14340711 | None:intergenic | 35.0% | |
| TGCTATTGGAGACATTTATG+CGG | + | chr8.2:14342627-14342646 | MS.gene62436:intron | 35.0% | |
| TGTCAAACTCACTTGATCAA+AGG | - | chr8.2:14341533-14341552 | None:intergenic | 35.0% | |
| TGTTCCATTAGTGCAGTATT+AGG | + | chr8.2:14341606-14341625 | MS.gene62436:intron | 35.0% | |
| TTCAAACCCTACTATTTACC+GGG | + | chr8.2:14341946-14341965 | MS.gene62436:CDS | 35.0% | |
| TTTGTTCAGGACTATTGAGT+CGG | + | chr8.2:14341732-14341751 | MS.gene62436:intron | 35.0% | |
| ! | AAGTGGGATTTTACTACTCT+AGG | - | chr8.2:14342487-14342506 | None:intergenic | 35.0% |
| ! | AGTGGGATTTTACTACTCTA+GGG | - | chr8.2:14342486-14342505 | None:intergenic | 35.0% |
| ! | TAGTAGGGTTTGAAGTAATC+CGG | - | chr8.2:14341940-14341959 | None:intergenic | 35.0% |
| !! | ACTTTTGGAAGGAGATTTCA+GGG | + | chr8.2:14341209-14341228 | MS.gene62436:intron | 35.0% |
| !! | GACTCATTTGGTGTTTATTG+GGG | + | chr8.2:14341469-14341488 | MS.gene62436:CDS | 35.0% |
| !! | GATTTTGATGCATGAGATGA+GGG | + | chr8.2:14340525-14340544 | MS.gene62436:intron | 35.0% |
| !! | GGACTCATTTGGTGTTTATT+GGG | + | chr8.2:14341468-14341487 | MS.gene62436:CDS | 35.0% |
| !! | GTTTTGTTACCACTTTTGGA+AGG | + | chr8.2:14341198-14341217 | MS.gene62436:intron | 35.0% |
| !! | TGATTTTGATGCATGAGATG+AGG | + | chr8.2:14340524-14340543 | MS.gene62436:intron | 35.0% |
| AAACCAAACGTAGCATACGA+CGG | + | chr8.2:14341008-14341027 | MS.gene62436:intron | 40.0% | |
| AAGCCTAGCTGTTAAGTTTG+AGG | + | chr8.2:14340599-14340618 | MS.gene62436:intron | 40.0% | |
| AAGTGGTAACAAAACCACGT+AGG | - | chr8.2:14341193-14341212 | None:intergenic | 40.0% | |
| AGAATTGCGTCGAGCAAAAT+TGG | + | chr8.2:14340249-14340268 | MS.gene62436:CDS | 40.0% | |
| AGATTTCAGGGTTGTTCTTC+AGG | + | chr8.2:14341221-14341240 | MS.gene62436:intron | 40.0% | |
| AGGTTCAGCTGCAATTGAAA+GGG | + | chr8.2:14341893-14341912 | MS.gene62436:CDS | 40.0% | |
| ATTAGGTGTAGGCTATGCAT+TGG | + | chr8.2:14342049-14342068 | MS.gene62436:CDS | 40.0% | |
| ATTTCAGGGTTGTTCTTCAG+GGG | + | chr8.2:14341223-14341242 | MS.gene62436:intron | 40.0% | |
| CAATGGTAGAAACAAATCCC+CGG | + | chr8.2:14341366-14341385 | MS.gene62436:intron | 40.0% | |
| CTAGCAATTCAGCTCAAACT+AGG | + | chr8.2:14342072-14342091 | MS.gene62436:CDS | 40.0% | |
| CTAGGGAAAACCCTTTCAAT+TGG | - | chr8.2:14342469-14342488 | None:intergenic | 40.0% | |
| CTGAAATCTCCTTCCAAAAG+TGG | - | chr8.2:14341210-14341229 | None:intergenic | 40.0% | |
| CTGATGTGGAGGAATTTGAT+GGG | + | chr8.2:14341447-14341466 | MS.gene62436:CDS | 40.0% | |
| CTTTGTCCCGGTAAATAGTA+GGG | - | chr8.2:14341955-14341974 | None:intergenic | 40.0% | |
| GATTTCAGGGTTGTTCTTCA+GGG | + | chr8.2:14341222-14341241 | MS.gene62436:intron | 40.0% | |
| GCTATTGGAGACATTTATGC+GGG | + | chr8.2:14342628-14342647 | MS.gene62436:intron | 40.0% | |
| GCTGCAAATGCTTCATCAAA+TGG | + | chr8.2:14340300-14340319 | MS.gene62436:CDS | 40.0% | |
| GGAATTTGATGGGACTCATT+TGG | + | chr8.2:14341457-14341476 | MS.gene62436:CDS | 40.0% | |
| TGAAGTAATCCGGCAATAGT+TGG | - | chr8.2:14341930-14341949 | None:intergenic | 40.0% | |
| TTGATAGGAATGATGCGTTG+TGG | + | chr8.2:14341813-14341832 | MS.gene62436:intron | 40.0% | |
| TTGTTCAGGACTATTGAGTC+GGG | + | chr8.2:14341733-14341752 | MS.gene62436:intron | 40.0% | |
| ! | AAGATGTTTCTGAGAGTCTG+AGG | + | chr8.2:14340982-14341001 | MS.gene62436:intron | 40.0% |
| ! | TCTCAATATGTTTTGCTGGG+CGG | - | chr8.2:14340759-14340778 | None:intergenic | 40.0% |
| !! | CACTTTTGGAAGGAGATTTC+AGG | + | chr8.2:14341208-14341227 | MS.gene62436:intron | 40.0% |
| !! | GGGACTCATTTGGTGTTTAT+TGG | + | chr8.2:14341467-14341486 | MS.gene62436:CDS | 40.0% |
| !!! | CGTGGTTTTGTTACCACTTT+TGG | + | chr8.2:14341194-14341213 | MS.gene62436:intron | 40.0% |
| !!! | TGGTGTTTTGGTTTGCTGAT+AGG | + | chr8.2:14340897-14340916 | MS.gene62436:intron | 40.0% |
| !!! | TTTTGGTTTGCTGATAGGCA+CGG | + | chr8.2:14340902-14340921 | MS.gene62436:intron | 40.0% |
| AAAACCTAATACTCCGGTGG+TGG | + | chr8.2:14340278-14340297 | MS.gene62436:CDS | 45.0% | |
| AACCAAACGTAGCATACGAC+GGG | + | chr8.2:14341009-14341028 | MS.gene62436:intron | 45.0% | |
| AATATACGTAAAGCCCCCGT+TGG | + | chr8.2:14340384-14340403 | MS.gene62436:CDS | 45.0% | |
| ACAGGTACAGAGATGGACAT+TGG | - | chr8.2:14342131-14342150 | None:intergenic | 45.0% | |
| AGAAACAAATCCCCGGAGTT+GGG | + | chr8.2:14341373-14341392 | MS.gene62436:intron | 45.0% | |
| ATGATGGCATGAGCACAGTT+AGG | - | chr8.2:14342539-14342558 | None:intergenic | 45.0% | |
| CAGAAAACCTAATACTCCGG+TGG | + | chr8.2:14340275-14340294 | MS.gene62436:CDS | 45.0% | |
| CAGCATTGCTTGAGTTATGC+CGG | + | chr8.2:14341865-14341884 | MS.gene62436:CDS | 45.0% | |
| CCATCAAATTCCTCCACATC+AGG | - | chr8.2:14341449-14341468 | None:intergenic | 45.0% | |
| CCTGATGTGGAGGAATTTGA+TGG | + | chr8.2:14341446-14341465 | MS.gene62436:CDS | 45.0% | |
| CGTGTATTCTCTGCTCACAA+TGG | + | chr8.2:14341349-14341368 | MS.gene62436:intron | 45.0% | |
| GAGGTTCAGCTGCAATTGAA+AGG | + | chr8.2:14341892-14341911 | MS.gene62436:CDS | 45.0% | |
| GATGGAGACTTGTGTGCTAT+TGG | + | chr8.2:14342613-14342632 | MS.gene62436:intron | 45.0% | |
| GATTGTAGGTTGTCCTGATG+TGG | + | chr8.2:14341433-14341452 | MS.gene62436:intron | 45.0% | |
| GCTTTGTCCCGGTAAATAGT+AGG | - | chr8.2:14341956-14341975 | None:intergenic | 45.0% | |
| TAGAAACAAATCCCCGGAGT+TGG | + | chr8.2:14341372-14341391 | MS.gene62436:intron | 45.0% | |
| TATGCAGTGGTGGCAAAGAA+AGG | - | chr8.2:14342431-14342450 | None:intergenic | 45.0% | |
| TGCAATTGAAAGGGCGGTTA+AGG | + | chr8.2:14341902-14341921 | MS.gene62436:CDS | 45.0% | |
| TTCAGCTGCAATTGAAAGGG+CGG | + | chr8.2:14341896-14341915 | MS.gene62436:CDS | 45.0% | |
| ! | ACACATTAGTCTCGGCATTG+TGG | - | chr8.2:14341404-14341423 | None:intergenic | 45.0% |
| ! | GTTAAGGCACCAACTATTGC+CGG | + | chr8.2:14341918-14341937 | MS.gene62436:CDS | 45.0% |
| ! | TTGTGGCGGAAAAGCTAGAT+AGG | + | chr8.2:14340187-14340206 | MS.gene62436:CDS | 45.0% |
| !! | CATTTGGTGTTTATTGGGGC+TGG | + | chr8.2:14341473-14341492 | MS.gene62436:CDS | 45.0% |
| ACGTCTAGATCGCTTTGTCC+CGG | - | chr8.2:14341967-14341986 | None:intergenic | 50.0% | |
| ACTGCATTCTCCTTACCCGT+TGG | - | chr8.2:14341843-14341862 | None:intergenic | 50.0% | |
| AGGGATTCAAGCTTTGCTGC+AGG | + | chr8.2:14342092-14342111 | MS.gene62436:CDS | 50.0% | |
| ATGCGTTGTGGAACACCAAC+GGG | + | chr8.2:14341825-14341844 | MS.gene62436:CDS | 50.0% | |
| ATTGTGGTCCTACCCAACTC+CGG | - | chr8.2:14341388-14341407 | None:intergenic | 50.0% | |
| GATGCGTTGTGGAACACCAA+CGG | + | chr8.2:14341824-14341843 | MS.gene62436:CDS | 50.0% | |
| GGATTCAAGCTTTGCTGCAG+GGG | + | chr8.2:14342094-14342113 | MS.gene62436:CDS | 50.0% | |
| GGGATTCAAGCTTTGCTGCA+GGG | + | chr8.2:14342093-14342112 | MS.gene62436:CDS | 50.0% | |
| TGTAGGTTGTCCTGATGTGG+AGG | + | chr8.2:14341436-14341455 | MS.gene62436:intron | 50.0% | |
| TTGCTTGAGTTATGCCGGAG+TGG | + | chr8.2:14341870-14341889 | MS.gene62436:CDS | 50.0% | |
| TTGTGGAACACCAACGGGTA+AGG | + | chr8.2:14341830-14341849 | MS.gene62436:CDS | 50.0% | |
| ! | GCAAGATGGTTCTACCTACG+TGG | + | chr8.2:14341176-14341195 | MS.gene62436:intron | 50.0% |
| ACAAATCCCCGGAGTTGGGT+AGG | + | chr8.2:14341377-14341396 | MS.gene62436:intron | 55.0% | |
| ACGCTCCATCTGAGCACCAA+CGG | - | chr8.2:14340403-14340422 | None:intergenic | 55.0% | |
| ACGTAGCATACGACGGGCAA+CGG | + | chr8.2:14341015-14341034 | MS.gene62436:intron | 55.0% | |
| CTTGAGTTATGCCGGAGTGG+AGG | + | chr8.2:14341873-14341892 | MS.gene62436:CDS | 55.0% | |
| TGCCCGTCGTATGCTACGTT+TGG | - | chr8.2:14341014-14341033 | None:intergenic | 55.0% | |
| TTGCAGCTGAACCTCCACTC+CGG | - | chr8.2:14341887-14341906 | None:intergenic | 55.0% | |
| TTGTGGTCCTACCCAACTCC+GGG | - | chr8.2:14341387-14341406 | None:intergenic | 55.0% | |
| ! | GAAGCATTTGCAGCCACCAC+CGG | - | chr8.2:14340294-14340313 | None:intergenic | 55.0% |
| CGCTCCATCTGAGCACCAAC+GGG | - | chr8.2:14340402-14340421 | None:intergenic | 60.0% | |
| CTCCATCTGAGCACCAACGG+GGG | - | chr8.2:14340400-14340419 | None:intergenic | 60.0% | |
| GCTCCATCTGAGCACCAACG+GGG | - | chr8.2:14340401-14340420 | None:intergenic | 60.0% | |
| TGTGGTCCTACCCAACTCCG+GGG | - | chr8.2:14341386-14341405 | None:intergenic | 60.0% | |
| ! | GCAGCCACCACCGGAGTATT+AGG | - | chr8.2:14340285-14340304 | None:intergenic | 60.0% |
| ! | AGCCCCCGTTGGTGCTCAGA+TGG | + | chr8.2:14340395-14340414 | MS.gene62436:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8.2 | gene | 14340183 | 14342751 | 14340183 | ID=MS.gene62436 |
| chr8.2 | mRNA | 14340183 | 14342751 | 14340183 | ID=MS.gene62436.t1;Parent=MS.gene62436 |
| chr8.2 | exon | 14340183 | 14340443 | 14340183 | ID=MS.gene62436.t1.exon1;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14340183 | 14340443 | 14340183 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| chr8.2 | exon | 14340919 | 14340986 | 14340919 | ID=MS.gene62436.t1.exon2;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14340919 | 14340986 | 14340919 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| chr8.2 | exon | 14341230 | 14341282 | 14341230 | ID=MS.gene62436.t1.exon3;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14341230 | 14341282 | 14341230 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| chr8.2 | exon | 14341441 | 14341540 | 14341441 | ID=MS.gene62436.t1.exon4;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14341441 | 14341540 | 14341441 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| chr8.2 | exon | 14341741 | 14341754 | 14341741 | ID=MS.gene62436.t1.exon5;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14341741 | 14341754 | 14341741 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| chr8.2 | exon | 14341820 | 14342148 | 14341820 | ID=MS.gene62436.t1.exon6;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14341820 | 14342148 | 14341820 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| chr8.2 | exon | 14342719 | 14342751 | 14342719 | ID=MS.gene62436.t1.exon7;Parent=MS.gene62436.t1 |
| chr8.2 | CDS | 14342719 | 14342751 | 14342719 | ID=cds.MS.gene62436.t1;Parent=MS.gene62436.t1 |
| Gene Sequence |
| Protein sequence |
